Multiple sequence alignment - TraesCS4A01G457300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G457300 chr4A 100.000 2411 0 0 1 2411 722778471 722780881 0.000000e+00 4453.0
1 TraesCS4A01G457300 chr4A 88.808 411 27 4 622 1022 114912590 114912189 1.000000e-133 486.0
2 TraesCS4A01G457300 chr4A 87.295 244 29 2 136 378 722791189 722791431 6.560000e-71 278.0
3 TraesCS4A01G457300 chr4A 100.000 72 0 0 977 1048 611586855 611586926 1.500000e-27 134.0
4 TraesCS4A01G457300 chr4A 94.444 54 3 0 662 715 415997784 415997731 1.540000e-12 84.2
5 TraesCS4A01G457300 chr2D 98.056 1800 24 6 622 2411 272798429 272800227 0.000000e+00 3120.0
6 TraesCS4A01G457300 chr2D 96.094 128 5 0 8 135 10971982 10972109 2.430000e-50 209.0
7 TraesCS4A01G457300 chr2D 96.094 128 5 0 8 135 119928334 119928207 2.430000e-50 209.0
8 TraesCS4A01G457300 chr1D 98.054 1799 25 8 622 2411 144238508 144236711 0.000000e+00 3120.0
9 TraesCS4A01G457300 chr5D 97.837 1803 23 9 622 2411 560880274 560878475 0.000000e+00 3099.0
10 TraesCS4A01G457300 chr5D 93.333 135 7 1 8 142 485780287 485780419 5.260000e-47 198.0
11 TraesCS4A01G457300 chrUn 97.781 1803 25 9 622 2411 93416541 93418341 0.000000e+00 3094.0
12 TraesCS4A01G457300 chrUn 98.365 1407 17 4 1010 2411 327660468 327661873 0.000000e+00 2466.0
13 TraesCS4A01G457300 chr3B 97.225 1802 33 11 622 2411 201522479 201520683 0.000000e+00 3035.0
14 TraesCS4A01G457300 chr6A 96.990 1794 42 10 622 2411 271185244 271183459 0.000000e+00 3003.0
15 TraesCS4A01G457300 chr3A 96.884 1797 38 9 622 2411 672914536 672916321 0.000000e+00 2992.0
16 TraesCS4A01G457300 chr1A 96.036 1791 57 11 624 2411 168442827 168444606 0.000000e+00 2902.0
17 TraesCS4A01G457300 chr7A 93.969 514 27 2 622 1131 352186327 352186840 0.000000e+00 774.0
18 TraesCS4A01G457300 chr7A 91.176 204 16 2 136 338 13544524 13544322 2.360000e-70 276.0
19 TraesCS4A01G457300 chr7A 83.871 217 17 8 373 582 13542521 13542316 8.800000e-45 191.0
20 TraesCS4A01G457300 chr1B 93.147 394 21 2 698 1085 127255265 127255658 7.480000e-160 573.0
21 TraesCS4A01G457300 chr1B 83.206 262 31 7 622 878 280420414 280420667 6.710000e-56 228.0
22 TraesCS4A01G457300 chr1B 83.206 262 30 5 622 878 338893184 338893436 6.710000e-56 228.0
23 TraesCS4A01G457300 chr4B 89.552 335 26 5 622 954 432863820 432864147 1.330000e-112 416.0
24 TraesCS4A01G457300 chr4B 83.803 426 43 6 945 1370 49056838 49057237 4.860000e-102 381.0
25 TraesCS4A01G457300 chr4B 95.238 168 3 2 840 1002 431405488 431405321 6.610000e-66 261.0
26 TraesCS4A01G457300 chr6D 96.063 127 5 0 8 134 114195262 114195136 8.740000e-50 207.0
27 TraesCS4A01G457300 chr6D 94.030 134 8 0 8 141 300934001 300933868 1.130000e-48 204.0
28 TraesCS4A01G457300 chr3D 96.063 127 5 0 8 134 303775969 303776095 8.740000e-50 207.0
29 TraesCS4A01G457300 chr3D 94.615 130 7 0 8 137 495216082 495215953 4.060000e-48 202.0
30 TraesCS4A01G457300 chr2B 96.063 127 5 0 8 134 326335366 326335492 8.740000e-50 207.0
31 TraesCS4A01G457300 chr2B 96.063 127 5 0 8 134 488762119 488762245 8.740000e-50 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G457300 chr4A 722778471 722780881 2410 False 4453.0 4453 100.0000 1 2411 1 chr4A.!!$F2 2410
1 TraesCS4A01G457300 chr2D 272798429 272800227 1798 False 3120.0 3120 98.0560 622 2411 1 chr2D.!!$F2 1789
2 TraesCS4A01G457300 chr1D 144236711 144238508 1797 True 3120.0 3120 98.0540 622 2411 1 chr1D.!!$R1 1789
3 TraesCS4A01G457300 chr5D 560878475 560880274 1799 True 3099.0 3099 97.8370 622 2411 1 chr5D.!!$R1 1789
4 TraesCS4A01G457300 chrUn 93416541 93418341 1800 False 3094.0 3094 97.7810 622 2411 1 chrUn.!!$F1 1789
5 TraesCS4A01G457300 chrUn 327660468 327661873 1405 False 2466.0 2466 98.3650 1010 2411 1 chrUn.!!$F2 1401
6 TraesCS4A01G457300 chr3B 201520683 201522479 1796 True 3035.0 3035 97.2250 622 2411 1 chr3B.!!$R1 1789
7 TraesCS4A01G457300 chr6A 271183459 271185244 1785 True 3003.0 3003 96.9900 622 2411 1 chr6A.!!$R1 1789
8 TraesCS4A01G457300 chr3A 672914536 672916321 1785 False 2992.0 2992 96.8840 622 2411 1 chr3A.!!$F1 1789
9 TraesCS4A01G457300 chr1A 168442827 168444606 1779 False 2902.0 2902 96.0360 624 2411 1 chr1A.!!$F1 1787
10 TraesCS4A01G457300 chr7A 352186327 352186840 513 False 774.0 774 93.9690 622 1131 1 chr7A.!!$F1 509
11 TraesCS4A01G457300 chr7A 13542316 13544524 2208 True 233.5 276 87.5235 136 582 2 chr7A.!!$R1 446

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.034283 GGGTGCGGGTATGGGTAAAA 60.034 55.0 0.00 0.0 0.0 1.52 F
338 340 0.108567 GGAGAGTCCGGAAGCAGAAC 60.109 60.0 5.23 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 2180 4.848562 TTCTGTTTAGTCGAGCTTCTCA 57.151 40.909 0.0 0.0 0.0 3.27 R
2320 3545 5.957774 ACCCCTTTTGTTATTCTATGTGCAT 59.042 36.000 0.0 0.0 0.0 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.530265 TGCTTAAGGTATGGGTACGTG 57.470 47.619 4.29 0.00 0.00 4.49
21 22 2.833338 TGCTTAAGGTATGGGTACGTGT 59.167 45.455 4.29 0.00 0.00 4.49
22 23 4.022603 TGCTTAAGGTATGGGTACGTGTA 58.977 43.478 4.29 0.00 0.00 2.90
23 24 4.465660 TGCTTAAGGTATGGGTACGTGTAA 59.534 41.667 4.29 0.00 0.00 2.41
24 25 5.046735 TGCTTAAGGTATGGGTACGTGTAAA 60.047 40.000 4.29 0.00 0.00 2.01
25 26 5.521372 GCTTAAGGTATGGGTACGTGTAAAG 59.479 44.000 4.29 0.00 0.00 1.85
26 27 6.603940 TTAAGGTATGGGTACGTGTAAAGT 57.396 37.500 0.00 0.00 0.00 2.66
27 28 5.488262 AAGGTATGGGTACGTGTAAAGTT 57.512 39.130 0.00 0.00 0.00 2.66
28 29 5.488262 AGGTATGGGTACGTGTAAAGTTT 57.512 39.130 0.00 0.00 0.00 2.66
29 30 5.482006 AGGTATGGGTACGTGTAAAGTTTC 58.518 41.667 0.00 0.00 0.00 2.78
30 31 5.011943 AGGTATGGGTACGTGTAAAGTTTCA 59.988 40.000 0.00 0.00 0.00 2.69
31 32 5.876460 GGTATGGGTACGTGTAAAGTTTCAT 59.124 40.000 0.00 0.00 0.00 2.57
32 33 7.041107 GGTATGGGTACGTGTAAAGTTTCATA 58.959 38.462 0.00 0.00 0.00 2.15
33 34 6.973229 ATGGGTACGTGTAAAGTTTCATAC 57.027 37.500 0.00 0.00 0.00 2.39
34 35 5.237048 TGGGTACGTGTAAAGTTTCATACC 58.763 41.667 0.00 1.38 0.00 2.73
35 36 4.631377 GGGTACGTGTAAAGTTTCATACCC 59.369 45.833 0.00 14.47 42.73 3.69
36 37 4.327087 GGTACGTGTAAAGTTTCATACCCG 59.673 45.833 0.00 0.00 0.00 5.28
37 38 3.993920 ACGTGTAAAGTTTCATACCCGT 58.006 40.909 0.00 0.00 32.58 5.28
38 39 3.742369 ACGTGTAAAGTTTCATACCCGTG 59.258 43.478 0.00 0.00 35.37 4.94
39 40 3.123959 CGTGTAAAGTTTCATACCCGTGG 59.876 47.826 0.00 0.00 0.00 4.94
40 41 3.437741 GTGTAAAGTTTCATACCCGTGGG 59.562 47.826 2.58 2.58 42.03 4.61
52 53 4.849310 CGTGGGTGCGGGTATGGG 62.849 72.222 0.00 0.00 0.00 4.00
53 54 3.723922 GTGGGTGCGGGTATGGGT 61.724 66.667 0.00 0.00 0.00 4.51
54 55 2.040770 TGGGTGCGGGTATGGGTA 59.959 61.111 0.00 0.00 0.00 3.69
55 56 1.615724 TGGGTGCGGGTATGGGTAA 60.616 57.895 0.00 0.00 0.00 2.85
56 57 1.206135 TGGGTGCGGGTATGGGTAAA 61.206 55.000 0.00 0.00 0.00 2.01
57 58 0.034283 GGGTGCGGGTATGGGTAAAA 60.034 55.000 0.00 0.00 0.00 1.52
58 59 1.410507 GGGTGCGGGTATGGGTAAAAT 60.411 52.381 0.00 0.00 0.00 1.82
59 60 2.380941 GGTGCGGGTATGGGTAAAATT 58.619 47.619 0.00 0.00 0.00 1.82
60 61 2.761767 GGTGCGGGTATGGGTAAAATTT 59.238 45.455 0.00 0.00 0.00 1.82
61 62 3.196039 GGTGCGGGTATGGGTAAAATTTT 59.804 43.478 8.75 8.75 0.00 1.82
62 63 4.177783 GTGCGGGTATGGGTAAAATTTTG 58.822 43.478 13.76 0.00 0.00 2.44
63 64 3.833070 TGCGGGTATGGGTAAAATTTTGT 59.167 39.130 13.76 0.00 0.00 2.83
64 65 5.014858 TGCGGGTATGGGTAAAATTTTGTA 58.985 37.500 13.76 0.00 0.00 2.41
65 66 5.105837 TGCGGGTATGGGTAAAATTTTGTAC 60.106 40.000 13.76 4.58 0.00 2.90
66 67 5.679382 GCGGGTATGGGTAAAATTTTGTACC 60.679 44.000 13.76 13.13 39.31 3.34
76 77 8.975410 GGTAAAATTTTGTACCCATTGACTAC 57.025 34.615 13.76 0.00 34.77 2.73
77 78 8.578151 GGTAAAATTTTGTACCCATTGACTACA 58.422 33.333 13.76 0.00 34.77 2.74
78 79 9.401873 GTAAAATTTTGTACCCATTGACTACAC 57.598 33.333 13.76 0.00 0.00 2.90
79 80 5.873179 ATTTTGTACCCATTGACTACACG 57.127 39.130 0.00 0.00 0.00 4.49
80 81 3.322211 TTGTACCCATTGACTACACGG 57.678 47.619 0.00 0.00 0.00 4.94
81 82 1.551430 TGTACCCATTGACTACACGGG 59.449 52.381 0.00 0.00 43.02 5.28
82 83 2.768046 ACCCATTGACTACACGGGT 58.232 52.632 0.00 0.00 45.53 5.28
85 86 2.833794 CCCATTGACTACACGGGTATG 58.166 52.381 0.00 0.00 31.80 2.39
86 87 2.484770 CCCATTGACTACACGGGTATGG 60.485 54.545 9.23 9.23 32.36 2.74
87 88 2.484770 CCATTGACTACACGGGTATGGG 60.485 54.545 8.44 0.00 30.25 4.00
88 89 1.941377 TTGACTACACGGGTATGGGT 58.059 50.000 0.00 0.00 0.00 4.51
89 90 2.824689 TGACTACACGGGTATGGGTA 57.175 50.000 0.00 0.00 0.00 3.69
90 91 3.317455 TGACTACACGGGTATGGGTAT 57.683 47.619 0.00 0.00 0.00 2.73
91 92 2.960384 TGACTACACGGGTATGGGTATG 59.040 50.000 0.00 0.00 0.00 2.39
92 93 2.298163 GACTACACGGGTATGGGTATGG 59.702 54.545 0.00 0.00 0.00 2.74
93 94 2.322658 CTACACGGGTATGGGTATGGT 58.677 52.381 0.00 0.00 0.00 3.55
94 95 2.475339 ACACGGGTATGGGTATGGTA 57.525 50.000 0.00 0.00 0.00 3.25
95 96 2.980548 ACACGGGTATGGGTATGGTAT 58.019 47.619 0.00 0.00 0.00 2.73
96 97 3.320129 ACACGGGTATGGGTATGGTATT 58.680 45.455 0.00 0.00 0.00 1.89
97 98 3.071892 ACACGGGTATGGGTATGGTATTG 59.928 47.826 0.00 0.00 0.00 1.90
98 99 2.039348 ACGGGTATGGGTATGGTATTGC 59.961 50.000 0.00 0.00 0.00 3.56
99 100 2.304761 CGGGTATGGGTATGGTATTGCT 59.695 50.000 0.00 0.00 0.00 3.91
100 101 3.618997 CGGGTATGGGTATGGTATTGCTC 60.619 52.174 0.00 0.00 0.00 4.26
101 102 3.587506 GGGTATGGGTATGGTATTGCTCT 59.412 47.826 0.00 0.00 0.00 4.09
102 103 4.781087 GGGTATGGGTATGGTATTGCTCTA 59.219 45.833 0.00 0.00 0.00 2.43
103 104 5.338137 GGGTATGGGTATGGTATTGCTCTAC 60.338 48.000 0.00 0.00 0.00 2.59
104 105 4.910458 ATGGGTATGGTATTGCTCTACC 57.090 45.455 7.99 7.99 41.39 3.18
105 106 3.697619 GGGTATGGTATTGCTCTACCC 57.302 52.381 11.32 0.61 43.42 3.69
106 107 2.028385 GGGTATGGTATTGCTCTACCCG 60.028 54.545 11.32 0.00 41.46 5.28
107 108 2.612221 GGTATGGTATTGCTCTACCCGC 60.612 54.545 11.32 3.80 40.47 6.13
108 109 0.396811 ATGGTATTGCTCTACCCGCC 59.603 55.000 11.32 0.00 40.47 6.13
109 110 1.070957 GGTATTGCTCTACCCGCCC 59.929 63.158 4.46 0.00 36.00 6.13
110 111 1.070957 GTATTGCTCTACCCGCCCC 59.929 63.158 0.00 0.00 0.00 5.80
111 112 1.383386 TATTGCTCTACCCGCCCCA 60.383 57.895 0.00 0.00 0.00 4.96
112 113 0.766674 TATTGCTCTACCCGCCCCAT 60.767 55.000 0.00 0.00 0.00 4.00
113 114 0.766674 ATTGCTCTACCCGCCCCATA 60.767 55.000 0.00 0.00 0.00 2.74
114 115 1.692173 TTGCTCTACCCGCCCCATAC 61.692 60.000 0.00 0.00 0.00 2.39
115 116 2.880380 GCTCTACCCGCCCCATACC 61.880 68.421 0.00 0.00 0.00 2.73
116 117 2.122725 TCTACCCGCCCCATACCC 60.123 66.667 0.00 0.00 0.00 3.69
117 118 2.122547 CTACCCGCCCCATACCCT 60.123 66.667 0.00 0.00 0.00 4.34
118 119 1.156803 CTACCCGCCCCATACCCTA 59.843 63.158 0.00 0.00 0.00 3.53
119 120 1.152269 TACCCGCCCCATACCCTAC 60.152 63.158 0.00 0.00 0.00 3.18
120 121 2.677968 TACCCGCCCCATACCCTACC 62.678 65.000 0.00 0.00 0.00 3.18
121 122 3.246880 CCGCCCCATACCCTACCC 61.247 72.222 0.00 0.00 0.00 3.69
122 123 2.446994 CGCCCCATACCCTACCCA 60.447 66.667 0.00 0.00 0.00 4.51
123 124 1.846124 CGCCCCATACCCTACCCAT 60.846 63.158 0.00 0.00 0.00 4.00
124 125 1.423794 CGCCCCATACCCTACCCATT 61.424 60.000 0.00 0.00 0.00 3.16
125 126 0.112412 GCCCCATACCCTACCCATTG 59.888 60.000 0.00 0.00 0.00 2.82
126 127 0.112412 CCCCATACCCTACCCATTGC 59.888 60.000 0.00 0.00 0.00 3.56
127 128 0.112412 CCCATACCCTACCCATTGCC 59.888 60.000 0.00 0.00 0.00 4.52
128 129 0.850100 CCATACCCTACCCATTGCCA 59.150 55.000 0.00 0.00 0.00 4.92
129 130 1.428912 CCATACCCTACCCATTGCCAT 59.571 52.381 0.00 0.00 0.00 4.40
130 131 2.555227 CCATACCCTACCCATTGCCATC 60.555 54.545 0.00 0.00 0.00 3.51
131 132 1.145571 TACCCTACCCATTGCCATCC 58.854 55.000 0.00 0.00 0.00 3.51
132 133 0.627469 ACCCTACCCATTGCCATCCT 60.627 55.000 0.00 0.00 0.00 3.24
133 134 0.557729 CCCTACCCATTGCCATCCTT 59.442 55.000 0.00 0.00 0.00 3.36
134 135 1.696063 CCTACCCATTGCCATCCTTG 58.304 55.000 0.00 0.00 0.00 3.61
166 168 0.606401 CACTTGCGGTCTTCACCCAT 60.606 55.000 0.00 0.00 40.01 4.00
182 184 3.055675 CACCCATTGAATCTGCCAATGTT 60.056 43.478 12.86 0.22 45.60 2.71
194 196 0.540365 CCAATGTTGGGGTGCACTCT 60.540 55.000 18.03 0.00 44.70 3.24
214 216 1.269958 GCCCCCTCAGCTTCAATTTT 58.730 50.000 0.00 0.00 0.00 1.82
239 241 6.707440 TTTCACAAACTCTTAGAAATGCCA 57.293 33.333 0.00 0.00 0.00 4.92
313 315 2.882777 CACTACTGCTCGGCTGCG 60.883 66.667 0.00 0.00 35.36 5.18
316 318 2.432456 TACTGCTCGGCTGCGTTG 60.432 61.111 0.00 0.00 35.36 4.10
336 338 4.019983 GGAGAGTCCGGAAGCAGA 57.980 61.111 5.23 0.00 0.00 4.26
337 339 2.277858 GGAGAGTCCGGAAGCAGAA 58.722 57.895 5.23 0.00 0.00 3.02
338 340 0.108567 GGAGAGTCCGGAAGCAGAAC 60.109 60.000 5.23 0.00 0.00 3.01
339 341 0.892063 GAGAGTCCGGAAGCAGAACT 59.108 55.000 5.23 0.00 0.00 3.01
340 342 0.605589 AGAGTCCGGAAGCAGAACTG 59.394 55.000 5.23 0.00 0.00 3.16
354 356 4.590400 CAGAACTGCGAGAATAAACCTG 57.410 45.455 0.00 0.00 0.00 4.00
378 380 2.290260 TGCCTGAAATGGTCACCTACAG 60.290 50.000 0.00 0.00 31.13 2.74
380 382 3.600388 CCTGAAATGGTCACCTACAGAC 58.400 50.000 0.00 0.00 35.29 3.51
382 384 4.466370 CCTGAAATGGTCACCTACAGACTA 59.534 45.833 0.00 0.00 36.29 2.59
383 385 5.401531 TGAAATGGTCACCTACAGACTAC 57.598 43.478 0.00 0.00 36.29 2.73
384 386 4.082408 TGAAATGGTCACCTACAGACTACG 60.082 45.833 0.00 0.00 36.29 3.51
385 387 1.830279 TGGTCACCTACAGACTACGG 58.170 55.000 0.00 0.00 36.29 4.02
386 388 1.352017 TGGTCACCTACAGACTACGGA 59.648 52.381 0.00 0.00 36.29 4.69
387 389 1.742268 GGTCACCTACAGACTACGGAC 59.258 57.143 0.00 0.00 36.29 4.79
388 390 1.742268 GTCACCTACAGACTACGGACC 59.258 57.143 0.00 0.00 33.29 4.46
389 391 1.632409 TCACCTACAGACTACGGACCT 59.368 52.381 0.00 0.00 0.00 3.85
390 392 1.743958 CACCTACAGACTACGGACCTG 59.256 57.143 0.00 0.00 0.00 4.00
391 393 1.353694 ACCTACAGACTACGGACCTGT 59.646 52.381 0.00 0.00 42.94 4.00
392 394 1.743958 CCTACAGACTACGGACCTGTG 59.256 57.143 7.92 0.24 40.86 3.66
393 395 2.617276 CCTACAGACTACGGACCTGTGA 60.617 54.545 7.92 0.00 40.86 3.58
394 396 1.245732 ACAGACTACGGACCTGTGAC 58.754 55.000 0.00 0.00 39.43 3.67
395 397 1.244816 CAGACTACGGACCTGTGACA 58.755 55.000 0.00 0.00 0.00 3.58
396 398 1.611977 CAGACTACGGACCTGTGACAA 59.388 52.381 0.00 0.00 0.00 3.18
397 399 1.887198 AGACTACGGACCTGTGACAAG 59.113 52.381 0.00 0.00 0.00 3.16
398 400 0.317479 ACTACGGACCTGTGACAAGC 59.683 55.000 0.00 0.00 0.00 4.01
399 401 0.317160 CTACGGACCTGTGACAAGCA 59.683 55.000 0.00 0.00 0.00 3.91
400 402 0.973632 TACGGACCTGTGACAAGCAT 59.026 50.000 0.00 0.00 0.00 3.79
401 403 0.108585 ACGGACCTGTGACAAGCATT 59.891 50.000 0.00 0.00 0.00 3.56
402 404 0.798776 CGGACCTGTGACAAGCATTC 59.201 55.000 0.00 0.00 0.00 2.67
403 405 1.168714 GGACCTGTGACAAGCATTCC 58.831 55.000 0.00 0.00 0.00 3.01
404 406 1.271597 GGACCTGTGACAAGCATTCCT 60.272 52.381 0.00 0.00 0.00 3.36
405 407 1.808945 GACCTGTGACAAGCATTCCTG 59.191 52.381 0.00 0.00 0.00 3.86
415 417 2.892025 GCATTCCTGCCAATCCACT 58.108 52.632 0.00 0.00 42.88 4.00
416 418 2.057137 GCATTCCTGCCAATCCACTA 57.943 50.000 0.00 0.00 42.88 2.74
417 419 1.952296 GCATTCCTGCCAATCCACTAG 59.048 52.381 0.00 0.00 42.88 2.57
418 420 2.684927 GCATTCCTGCCAATCCACTAGT 60.685 50.000 0.00 0.00 42.88 2.57
419 421 3.624777 CATTCCTGCCAATCCACTAGTT 58.375 45.455 0.00 0.00 0.00 2.24
420 422 4.780815 CATTCCTGCCAATCCACTAGTTA 58.219 43.478 0.00 0.00 0.00 2.24
421 423 4.487714 TTCCTGCCAATCCACTAGTTAG 57.512 45.455 0.00 0.00 0.00 2.34
422 424 3.719871 TCCTGCCAATCCACTAGTTAGA 58.280 45.455 0.00 0.00 0.00 2.10
423 425 3.706594 TCCTGCCAATCCACTAGTTAGAG 59.293 47.826 0.00 0.00 0.00 2.43
424 426 3.706594 CCTGCCAATCCACTAGTTAGAGA 59.293 47.826 0.00 0.00 0.00 3.10
425 427 4.162320 CCTGCCAATCCACTAGTTAGAGAA 59.838 45.833 0.00 0.00 0.00 2.87
426 428 5.163258 CCTGCCAATCCACTAGTTAGAGAAT 60.163 44.000 0.00 0.00 0.00 2.40
427 429 6.313519 TGCCAATCCACTAGTTAGAGAATT 57.686 37.500 0.00 0.00 0.00 2.17
428 430 7.419057 CCTGCCAATCCACTAGTTAGAGAATTA 60.419 40.741 0.00 0.00 0.00 1.40
429 431 8.034313 TGCCAATCCACTAGTTAGAGAATTAT 57.966 34.615 0.00 0.00 0.00 1.28
430 432 8.494433 TGCCAATCCACTAGTTAGAGAATTATT 58.506 33.333 0.00 0.00 0.00 1.40
431 433 8.994170 GCCAATCCACTAGTTAGAGAATTATTC 58.006 37.037 0.00 0.00 0.00 1.75
432 434 9.495572 CCAATCCACTAGTTAGAGAATTATTCC 57.504 37.037 0.78 0.00 0.00 3.01
436 438 8.483758 TCCACTAGTTAGAGAATTATTCCAACC 58.516 37.037 0.78 0.00 0.00 3.77
437 439 8.265055 CCACTAGTTAGAGAATTATTCCAACCA 58.735 37.037 0.78 0.00 0.00 3.67
438 440 9.319143 CACTAGTTAGAGAATTATTCCAACCAG 57.681 37.037 0.78 5.31 0.00 4.00
439 441 9.268282 ACTAGTTAGAGAATTATTCCAACCAGA 57.732 33.333 12.89 2.15 0.00 3.86
442 444 9.981460 AGTTAGAGAATTATTCCAACCAGATTT 57.019 29.630 0.78 0.00 0.00 2.17
444 446 9.973661 TTAGAGAATTATTCCAACCAGATTTCA 57.026 29.630 0.78 0.00 0.00 2.69
446 448 9.129532 AGAGAATTATTCCAACCAGATTTCATC 57.870 33.333 0.78 0.00 0.00 2.92
447 449 8.827832 AGAATTATTCCAACCAGATTTCATCA 57.172 30.769 0.78 0.00 0.00 3.07
448 450 9.430399 AGAATTATTCCAACCAGATTTCATCAT 57.570 29.630 0.78 0.00 0.00 2.45
450 452 9.826574 AATTATTCCAACCAGATTTCATCATTG 57.173 29.630 0.00 0.00 0.00 2.82
451 453 5.664294 TTCCAACCAGATTTCATCATTGG 57.336 39.130 0.00 0.00 38.95 3.16
452 454 4.933134 TCCAACCAGATTTCATCATTGGA 58.067 39.130 10.71 10.71 41.60 3.53
453 455 5.331906 TCCAACCAGATTTCATCATTGGAA 58.668 37.500 11.72 0.00 41.25 3.53
454 456 5.779260 TCCAACCAGATTTCATCATTGGAAA 59.221 36.000 11.72 0.00 41.25 3.13
455 457 6.071221 TCCAACCAGATTTCATCATTGGAAAG 60.071 38.462 11.72 0.00 41.25 2.62
456 458 6.295462 CCAACCAGATTTCATCATTGGAAAGT 60.295 38.462 7.97 0.00 39.47 2.66
457 459 7.093814 CCAACCAGATTTCATCATTGGAAAGTA 60.094 37.037 7.97 0.00 39.47 2.24
458 460 7.636150 ACCAGATTTCATCATTGGAAAGTAG 57.364 36.000 0.00 0.00 37.64 2.57
459 461 6.096001 ACCAGATTTCATCATTGGAAAGTAGC 59.904 38.462 0.00 0.00 37.64 3.58
460 462 6.095860 CCAGATTTCATCATTGGAAAGTAGCA 59.904 38.462 0.00 0.00 37.64 3.49
461 463 7.194278 CAGATTTCATCATTGGAAAGTAGCAG 58.806 38.462 0.00 0.00 37.64 4.24
462 464 6.888632 AGATTTCATCATTGGAAAGTAGCAGT 59.111 34.615 0.00 0.00 37.64 4.40
463 465 8.049117 AGATTTCATCATTGGAAAGTAGCAGTA 58.951 33.333 0.00 0.00 37.64 2.74
464 466 7.615582 TTTCATCATTGGAAAGTAGCAGTAG 57.384 36.000 0.00 0.00 31.13 2.57
465 467 6.299805 TCATCATTGGAAAGTAGCAGTAGT 57.700 37.500 0.00 0.00 0.00 2.73
466 468 6.108687 TCATCATTGGAAAGTAGCAGTAGTG 58.891 40.000 0.00 0.00 0.00 2.74
467 469 5.738619 TCATTGGAAAGTAGCAGTAGTGA 57.261 39.130 0.42 0.00 0.00 3.41
468 470 6.299805 TCATTGGAAAGTAGCAGTAGTGAT 57.700 37.500 0.42 0.00 0.00 3.06
469 471 6.108687 TCATTGGAAAGTAGCAGTAGTGATG 58.891 40.000 0.42 0.00 0.00 3.07
470 472 5.483685 TTGGAAAGTAGCAGTAGTGATGT 57.516 39.130 0.42 0.00 0.00 3.06
471 473 5.483685 TGGAAAGTAGCAGTAGTGATGTT 57.516 39.130 0.42 0.00 0.00 2.71
472 474 5.479306 TGGAAAGTAGCAGTAGTGATGTTC 58.521 41.667 0.42 1.43 0.00 3.18
473 475 4.870991 GGAAAGTAGCAGTAGTGATGTTCC 59.129 45.833 0.42 6.84 0.00 3.62
474 476 5.337652 GGAAAGTAGCAGTAGTGATGTTCCT 60.338 44.000 15.27 1.16 31.27 3.36
475 477 4.727507 AGTAGCAGTAGTGATGTTCCTG 57.272 45.455 0.42 0.00 0.00 3.86
476 478 4.344978 AGTAGCAGTAGTGATGTTCCTGA 58.655 43.478 0.42 0.00 0.00 3.86
477 479 4.772624 AGTAGCAGTAGTGATGTTCCTGAA 59.227 41.667 0.42 0.00 0.00 3.02
478 480 4.623932 AGCAGTAGTGATGTTCCTGAAA 57.376 40.909 0.42 0.00 0.00 2.69
479 481 4.973168 AGCAGTAGTGATGTTCCTGAAAA 58.027 39.130 0.42 0.00 0.00 2.29
480 482 5.564550 AGCAGTAGTGATGTTCCTGAAAAT 58.435 37.500 0.42 0.00 0.00 1.82
481 483 6.711277 AGCAGTAGTGATGTTCCTGAAAATA 58.289 36.000 0.42 0.00 0.00 1.40
482 484 7.168219 AGCAGTAGTGATGTTCCTGAAAATAA 58.832 34.615 0.42 0.00 0.00 1.40
483 485 7.119846 AGCAGTAGTGATGTTCCTGAAAATAAC 59.880 37.037 0.42 0.00 0.00 1.89
484 486 7.094805 GCAGTAGTGATGTTCCTGAAAATAACA 60.095 37.037 0.42 0.00 37.51 2.41
485 487 8.950210 CAGTAGTGATGTTCCTGAAAATAACAT 58.050 33.333 0.00 0.00 44.35 2.71
495 497 9.788960 GTTCCTGAAAATAACATCATAAAGTCC 57.211 33.333 0.00 0.00 0.00 3.85
496 498 9.527157 TTCCTGAAAATAACATCATAAAGTCCA 57.473 29.630 0.00 0.00 0.00 4.02
497 499 9.527157 TCCTGAAAATAACATCATAAAGTCCAA 57.473 29.630 0.00 0.00 0.00 3.53
508 510 8.704668 ACATCATAAAGTCCAAATTAAATCCCC 58.295 33.333 0.00 0.00 0.00 4.81
509 511 7.669089 TCATAAAGTCCAAATTAAATCCCCC 57.331 36.000 0.00 0.00 0.00 5.40
524 526 3.329300 CCCCCTTATTCGCCATCAG 57.671 57.895 0.00 0.00 0.00 2.90
525 527 0.890996 CCCCCTTATTCGCCATCAGC 60.891 60.000 0.00 0.00 38.52 4.26
526 528 0.890996 CCCCTTATTCGCCATCAGCC 60.891 60.000 0.00 0.00 38.78 4.85
527 529 0.179020 CCCTTATTCGCCATCAGCCA 60.179 55.000 0.00 0.00 38.78 4.75
528 530 1.546323 CCCTTATTCGCCATCAGCCAT 60.546 52.381 0.00 0.00 38.78 4.40
529 531 2.233271 CCTTATTCGCCATCAGCCATT 58.767 47.619 0.00 0.00 38.78 3.16
530 532 3.411446 CCTTATTCGCCATCAGCCATTA 58.589 45.455 0.00 0.00 38.78 1.90
531 533 4.012374 CCTTATTCGCCATCAGCCATTAT 58.988 43.478 0.00 0.00 38.78 1.28
532 534 4.460382 CCTTATTCGCCATCAGCCATTATT 59.540 41.667 0.00 0.00 38.78 1.40
533 535 5.647658 CCTTATTCGCCATCAGCCATTATTA 59.352 40.000 0.00 0.00 38.78 0.98
534 536 6.403636 CCTTATTCGCCATCAGCCATTATTAC 60.404 42.308 0.00 0.00 38.78 1.89
535 537 2.778299 TCGCCATCAGCCATTATTACC 58.222 47.619 0.00 0.00 38.78 2.85
536 538 1.812571 CGCCATCAGCCATTATTACCC 59.187 52.381 0.00 0.00 38.78 3.69
537 539 2.171003 GCCATCAGCCATTATTACCCC 58.829 52.381 0.00 0.00 34.35 4.95
538 540 2.807676 CCATCAGCCATTATTACCCCC 58.192 52.381 0.00 0.00 0.00 5.40
539 541 2.379907 CCATCAGCCATTATTACCCCCT 59.620 50.000 0.00 0.00 0.00 4.79
540 542 3.181418 CCATCAGCCATTATTACCCCCTT 60.181 47.826 0.00 0.00 0.00 3.95
541 543 4.482990 CATCAGCCATTATTACCCCCTTT 58.517 43.478 0.00 0.00 0.00 3.11
542 544 4.178956 TCAGCCATTATTACCCCCTTTC 57.821 45.455 0.00 0.00 0.00 2.62
543 545 3.791545 TCAGCCATTATTACCCCCTTTCT 59.208 43.478 0.00 0.00 0.00 2.52
544 546 4.979039 TCAGCCATTATTACCCCCTTTCTA 59.021 41.667 0.00 0.00 0.00 2.10
545 547 5.070685 CAGCCATTATTACCCCCTTTCTAC 58.929 45.833 0.00 0.00 0.00 2.59
546 548 4.982302 AGCCATTATTACCCCCTTTCTACT 59.018 41.667 0.00 0.00 0.00 2.57
547 549 5.073280 AGCCATTATTACCCCCTTTCTACTC 59.927 44.000 0.00 0.00 0.00 2.59
548 550 5.073280 GCCATTATTACCCCCTTTCTACTCT 59.927 44.000 0.00 0.00 0.00 3.24
549 551 6.410504 GCCATTATTACCCCCTTTCTACTCTT 60.411 42.308 0.00 0.00 0.00 2.85
550 552 6.998673 CCATTATTACCCCCTTTCTACTCTTG 59.001 42.308 0.00 0.00 0.00 3.02
551 553 7.366551 CCATTATTACCCCCTTTCTACTCTTGT 60.367 40.741 0.00 0.00 0.00 3.16
552 554 8.711170 CATTATTACCCCCTTTCTACTCTTGTA 58.289 37.037 0.00 0.00 0.00 2.41
553 555 6.556974 ATTACCCCCTTTCTACTCTTGTAC 57.443 41.667 0.00 0.00 0.00 2.90
554 556 3.865571 ACCCCCTTTCTACTCTTGTACA 58.134 45.455 0.00 0.00 0.00 2.90
555 557 3.838903 ACCCCCTTTCTACTCTTGTACAG 59.161 47.826 0.00 0.00 0.00 2.74
556 558 4.094476 CCCCCTTTCTACTCTTGTACAGA 58.906 47.826 0.00 0.00 0.00 3.41
557 559 4.081586 CCCCCTTTCTACTCTTGTACAGAC 60.082 50.000 0.00 0.00 0.00 3.51
558 560 4.081586 CCCCTTTCTACTCTTGTACAGACC 60.082 50.000 0.00 0.00 0.00 3.85
559 561 4.527038 CCCTTTCTACTCTTGTACAGACCA 59.473 45.833 0.00 0.00 0.00 4.02
560 562 5.471257 CCTTTCTACTCTTGTACAGACCAC 58.529 45.833 0.00 0.00 0.00 4.16
561 563 5.244178 CCTTTCTACTCTTGTACAGACCACT 59.756 44.000 0.00 0.00 0.00 4.00
571 573 2.846371 CAGACCACTGTAAGCCTGC 58.154 57.895 0.00 0.00 37.60 4.85
572 574 0.322975 CAGACCACTGTAAGCCTGCT 59.677 55.000 0.00 0.00 37.60 4.24
573 575 1.550524 CAGACCACTGTAAGCCTGCTA 59.449 52.381 0.00 0.00 37.60 3.49
574 576 2.169352 CAGACCACTGTAAGCCTGCTAT 59.831 50.000 0.00 0.00 37.60 2.97
575 577 2.840651 AGACCACTGTAAGCCTGCTATT 59.159 45.455 0.00 0.00 37.60 1.73
576 578 3.264450 AGACCACTGTAAGCCTGCTATTT 59.736 43.478 0.00 0.00 37.60 1.40
577 579 3.610911 ACCACTGTAAGCCTGCTATTTC 58.389 45.455 0.00 0.00 37.60 2.17
578 580 3.264450 ACCACTGTAAGCCTGCTATTTCT 59.736 43.478 0.00 0.00 37.60 2.52
579 581 3.624861 CCACTGTAAGCCTGCTATTTCTG 59.375 47.826 0.00 0.00 37.60 3.02
580 582 3.064545 CACTGTAAGCCTGCTATTTCTGC 59.935 47.826 0.00 0.00 37.60 4.26
581 583 2.279741 TGTAAGCCTGCTATTTCTGCG 58.720 47.619 0.00 0.00 0.00 5.18
582 584 2.280628 GTAAGCCTGCTATTTCTGCGT 58.719 47.619 0.00 0.00 0.00 5.24
583 585 2.691409 AAGCCTGCTATTTCTGCGTA 57.309 45.000 0.00 0.00 0.00 4.42
584 586 2.918712 AGCCTGCTATTTCTGCGTAT 57.081 45.000 0.00 0.00 0.00 3.06
585 587 2.760374 AGCCTGCTATTTCTGCGTATC 58.240 47.619 0.00 0.00 0.00 2.24
586 588 1.801178 GCCTGCTATTTCTGCGTATCC 59.199 52.381 0.00 0.00 0.00 2.59
587 589 2.548920 GCCTGCTATTTCTGCGTATCCT 60.549 50.000 0.00 0.00 0.00 3.24
588 590 3.062763 CCTGCTATTTCTGCGTATCCTG 58.937 50.000 0.00 0.00 0.00 3.86
589 591 3.493350 CCTGCTATTTCTGCGTATCCTGT 60.493 47.826 0.00 0.00 0.00 4.00
590 592 4.122776 CTGCTATTTCTGCGTATCCTGTT 58.877 43.478 0.00 0.00 0.00 3.16
591 593 4.513442 TGCTATTTCTGCGTATCCTGTTT 58.487 39.130 0.00 0.00 0.00 2.83
592 594 4.941263 TGCTATTTCTGCGTATCCTGTTTT 59.059 37.500 0.00 0.00 0.00 2.43
593 595 6.110033 TGCTATTTCTGCGTATCCTGTTTTA 58.890 36.000 0.00 0.00 0.00 1.52
594 596 6.765989 TGCTATTTCTGCGTATCCTGTTTTAT 59.234 34.615 0.00 0.00 0.00 1.40
595 597 7.042051 TGCTATTTCTGCGTATCCTGTTTTATC 60.042 37.037 0.00 0.00 0.00 1.75
596 598 7.171678 GCTATTTCTGCGTATCCTGTTTTATCT 59.828 37.037 0.00 0.00 0.00 1.98
597 599 7.865706 ATTTCTGCGTATCCTGTTTTATCTT 57.134 32.000 0.00 0.00 0.00 2.40
598 600 8.958119 ATTTCTGCGTATCCTGTTTTATCTTA 57.042 30.769 0.00 0.00 0.00 2.10
599 601 8.958119 TTTCTGCGTATCCTGTTTTATCTTAT 57.042 30.769 0.00 0.00 0.00 1.73
600 602 8.958119 TTCTGCGTATCCTGTTTTATCTTATT 57.042 30.769 0.00 0.00 0.00 1.40
601 603 8.365399 TCTGCGTATCCTGTTTTATCTTATTG 57.635 34.615 0.00 0.00 0.00 1.90
602 604 7.441157 TCTGCGTATCCTGTTTTATCTTATTGG 59.559 37.037 0.00 0.00 0.00 3.16
603 605 7.051623 TGCGTATCCTGTTTTATCTTATTGGT 58.948 34.615 0.00 0.00 0.00 3.67
604 606 8.205512 TGCGTATCCTGTTTTATCTTATTGGTA 58.794 33.333 0.00 0.00 0.00 3.25
605 607 9.048446 GCGTATCCTGTTTTATCTTATTGGTAA 57.952 33.333 0.00 0.00 0.00 2.85
608 610 7.875327 TCCTGTTTTATCTTATTGGTAAGCC 57.125 36.000 0.00 0.00 37.75 4.35
609 611 7.639378 TCCTGTTTTATCTTATTGGTAAGCCT 58.361 34.615 0.00 0.00 37.75 4.58
610 612 8.774183 TCCTGTTTTATCTTATTGGTAAGCCTA 58.226 33.333 0.00 0.00 37.75 3.93
611 613 9.403583 CCTGTTTTATCTTATTGGTAAGCCTAA 57.596 33.333 0.00 0.00 37.75 2.69
613 615 9.969001 TGTTTTATCTTATTGGTAAGCCTAACT 57.031 29.630 0.00 0.00 37.75 2.24
615 617 9.623000 TTTTATCTTATTGGTAAGCCTAACTCC 57.377 33.333 0.00 0.00 37.75 3.85
616 618 5.272283 TCTTATTGGTAAGCCTAACTCCG 57.728 43.478 0.00 0.00 37.75 4.63
617 619 2.327200 ATTGGTAAGCCTAACTCCGC 57.673 50.000 0.00 0.00 35.27 5.54
618 620 0.251073 TTGGTAAGCCTAACTCCGCC 59.749 55.000 0.00 0.00 35.27 6.13
619 621 0.616679 TGGTAAGCCTAACTCCGCCT 60.617 55.000 0.00 0.00 35.27 5.52
620 622 1.342275 TGGTAAGCCTAACTCCGCCTA 60.342 52.381 0.00 0.00 35.27 3.93
673 675 6.987404 GCCTCTAGAAAGATCCGAAGTAATTT 59.013 38.462 0.00 0.00 0.00 1.82
711 713 7.724305 ACGTACATGTAAAGAGTTCAAATGT 57.276 32.000 7.25 0.00 0.00 2.71
858 860 7.337942 ACCAAAATAGTTTCATTAGCTCCTGAG 59.662 37.037 0.00 0.00 0.00 3.35
1059 1073 8.988934 TCTATAAGAAATGCGGACATGAATAAC 58.011 33.333 0.00 0.00 36.36 1.89
1139 1154 7.387122 ACTTCTACGAGAGGGTTTTATTGAAAC 59.613 37.037 0.00 0.00 45.53 2.78
1166 1181 3.495377 CGGAAACATCAGGAACGTAACAA 59.505 43.478 0.00 0.00 0.00 2.83
1357 2180 7.118496 ACTTCTCGAGGAATAATGACAGATT 57.882 36.000 13.56 0.00 33.01 2.40
2320 3545 6.680874 TGCACGTTTTAGTTTAAGGAAGAA 57.319 33.333 0.00 0.00 0.00 2.52
2326 3551 7.136119 CGTTTTAGTTTAAGGAAGAATGCACA 58.864 34.615 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.833338 ACACGTACCCATACCTTAAGCA 59.167 45.455 0.00 0.00 0.00 3.91
1 2 3.531934 ACACGTACCCATACCTTAAGC 57.468 47.619 0.00 0.00 0.00 3.09
2 3 6.633856 ACTTTACACGTACCCATACCTTAAG 58.366 40.000 0.00 0.00 0.00 1.85
3 4 6.603940 ACTTTACACGTACCCATACCTTAA 57.396 37.500 0.00 0.00 0.00 1.85
4 5 6.603940 AACTTTACACGTACCCATACCTTA 57.396 37.500 0.00 0.00 0.00 2.69
5 6 5.488262 AACTTTACACGTACCCATACCTT 57.512 39.130 0.00 0.00 0.00 3.50
6 7 5.011943 TGAAACTTTACACGTACCCATACCT 59.988 40.000 0.00 0.00 0.00 3.08
7 8 5.237048 TGAAACTTTACACGTACCCATACC 58.763 41.667 0.00 0.00 0.00 2.73
8 9 6.973229 ATGAAACTTTACACGTACCCATAC 57.027 37.500 0.00 0.00 0.00 2.39
9 10 7.041107 GGTATGAAACTTTACACGTACCCATA 58.959 38.462 0.00 0.00 38.32 2.74
10 11 5.876460 GGTATGAAACTTTACACGTACCCAT 59.124 40.000 0.00 0.00 38.32 4.00
11 12 5.237048 GGTATGAAACTTTACACGTACCCA 58.763 41.667 0.00 0.00 38.32 4.51
12 13 5.784750 GGTATGAAACTTTACACGTACCC 57.215 43.478 0.00 0.00 38.32 3.69
13 14 4.327087 CGGGTATGAAACTTTACACGTACC 59.673 45.833 0.00 0.00 39.70 3.34
14 15 5.440260 CGGGTATGAAACTTTACACGTAC 57.560 43.478 0.00 0.00 39.70 3.67
18 19 3.437741 CCCACGGGTATGAAACTTTACAC 59.562 47.826 0.00 0.00 0.00 2.90
19 20 3.677190 CCCACGGGTATGAAACTTTACA 58.323 45.455 0.00 0.00 0.00 2.41
35 36 4.849310 CCCATACCCGCACCCACG 62.849 72.222 0.00 0.00 0.00 4.94
36 37 1.912826 TTACCCATACCCGCACCCAC 61.913 60.000 0.00 0.00 0.00 4.61
37 38 1.206135 TTTACCCATACCCGCACCCA 61.206 55.000 0.00 0.00 0.00 4.51
38 39 0.034283 TTTTACCCATACCCGCACCC 60.034 55.000 0.00 0.00 0.00 4.61
39 40 2.061509 ATTTTACCCATACCCGCACC 57.938 50.000 0.00 0.00 0.00 5.01
40 41 4.177783 CAAAATTTTACCCATACCCGCAC 58.822 43.478 2.44 0.00 0.00 5.34
41 42 3.833070 ACAAAATTTTACCCATACCCGCA 59.167 39.130 2.44 0.00 0.00 5.69
42 43 4.459390 ACAAAATTTTACCCATACCCGC 57.541 40.909 2.44 0.00 0.00 6.13
43 44 5.893687 GGTACAAAATTTTACCCATACCCG 58.106 41.667 10.61 0.00 32.87 5.28
51 52 8.578151 TGTAGTCAATGGGTACAAAATTTTACC 58.422 33.333 12.64 12.64 37.60 2.85
52 53 9.401873 GTGTAGTCAATGGGTACAAAATTTTAC 57.598 33.333 2.44 0.00 0.00 2.01
53 54 8.291032 CGTGTAGTCAATGGGTACAAAATTTTA 58.709 33.333 2.44 0.00 0.00 1.52
54 55 7.142680 CGTGTAGTCAATGGGTACAAAATTTT 58.857 34.615 0.00 0.00 0.00 1.82
55 56 6.294286 CCGTGTAGTCAATGGGTACAAAATTT 60.294 38.462 0.00 0.00 0.00 1.82
56 57 5.182380 CCGTGTAGTCAATGGGTACAAAATT 59.818 40.000 0.00 0.00 0.00 1.82
57 58 4.698304 CCGTGTAGTCAATGGGTACAAAAT 59.302 41.667 0.00 0.00 0.00 1.82
58 59 4.066490 CCGTGTAGTCAATGGGTACAAAA 58.934 43.478 0.00 0.00 0.00 2.44
59 60 3.557475 CCCGTGTAGTCAATGGGTACAAA 60.557 47.826 0.00 0.00 37.00 2.83
60 61 2.027929 CCCGTGTAGTCAATGGGTACAA 60.028 50.000 0.00 0.00 37.00 2.41
61 62 1.551430 CCCGTGTAGTCAATGGGTACA 59.449 52.381 0.00 0.00 37.00 2.90
62 63 1.551883 ACCCGTGTAGTCAATGGGTAC 59.448 52.381 4.50 0.00 46.34 3.34
63 64 1.941377 ACCCGTGTAGTCAATGGGTA 58.059 50.000 4.50 0.00 46.34 3.69
64 65 2.768046 ACCCGTGTAGTCAATGGGT 58.232 52.632 0.30 0.30 44.66 4.51
65 66 2.484770 CCATACCCGTGTAGTCAATGGG 60.485 54.545 0.00 0.00 43.24 4.00
66 67 2.484770 CCCATACCCGTGTAGTCAATGG 60.485 54.545 0.00 0.00 0.00 3.16
67 68 2.169769 ACCCATACCCGTGTAGTCAATG 59.830 50.000 0.00 0.00 0.00 2.82
68 69 2.474112 ACCCATACCCGTGTAGTCAAT 58.526 47.619 0.00 0.00 0.00 2.57
69 70 1.941377 ACCCATACCCGTGTAGTCAA 58.059 50.000 0.00 0.00 0.00 3.18
70 71 2.824689 TACCCATACCCGTGTAGTCA 57.175 50.000 0.00 0.00 0.00 3.41
71 72 2.298163 CCATACCCATACCCGTGTAGTC 59.702 54.545 0.00 0.00 0.00 2.59
72 73 2.322658 CCATACCCATACCCGTGTAGT 58.677 52.381 0.00 0.00 0.00 2.73
73 74 2.322658 ACCATACCCATACCCGTGTAG 58.677 52.381 0.00 0.00 0.00 2.74
74 75 2.475339 ACCATACCCATACCCGTGTA 57.525 50.000 0.00 0.00 0.00 2.90
75 76 2.475339 TACCATACCCATACCCGTGT 57.525 50.000 0.00 0.00 0.00 4.49
76 77 3.670625 CAATACCATACCCATACCCGTG 58.329 50.000 0.00 0.00 0.00 4.94
77 78 2.039348 GCAATACCATACCCATACCCGT 59.961 50.000 0.00 0.00 0.00 5.28
78 79 2.304761 AGCAATACCATACCCATACCCG 59.695 50.000 0.00 0.00 0.00 5.28
79 80 3.587506 AGAGCAATACCATACCCATACCC 59.412 47.826 0.00 0.00 0.00 3.69
80 81 4.910458 AGAGCAATACCATACCCATACC 57.090 45.455 0.00 0.00 0.00 2.73
81 82 5.731591 GGTAGAGCAATACCATACCCATAC 58.268 45.833 11.42 0.00 44.04 2.39
83 84 4.910458 GGTAGAGCAATACCATACCCAT 57.090 45.455 11.42 0.00 44.04 4.00
85 86 3.697619 GGGTAGAGCAATACCATACCC 57.302 52.381 16.56 3.12 46.04 3.69
86 87 2.612221 GCGGGTAGAGCAATACCATACC 60.612 54.545 16.56 4.24 46.04 2.73
87 88 2.612221 GGCGGGTAGAGCAATACCATAC 60.612 54.545 16.56 7.14 46.04 2.39
88 89 1.621814 GGCGGGTAGAGCAATACCATA 59.378 52.381 16.56 0.00 46.04 2.74
89 90 0.396811 GGCGGGTAGAGCAATACCAT 59.603 55.000 16.56 0.00 46.04 3.55
90 91 1.692173 GGGCGGGTAGAGCAATACCA 61.692 60.000 16.56 0.00 46.04 3.25
91 92 1.070957 GGGCGGGTAGAGCAATACC 59.929 63.158 8.50 8.50 43.90 2.73
92 93 1.070957 GGGGCGGGTAGAGCAATAC 59.929 63.158 0.00 0.00 36.08 1.89
93 94 0.766674 ATGGGGCGGGTAGAGCAATA 60.767 55.000 0.00 0.00 36.08 1.90
94 95 0.766674 TATGGGGCGGGTAGAGCAAT 60.767 55.000 0.00 0.00 36.08 3.56
95 96 1.383386 TATGGGGCGGGTAGAGCAA 60.383 57.895 0.00 0.00 36.08 3.91
96 97 2.138179 GTATGGGGCGGGTAGAGCA 61.138 63.158 0.00 0.00 36.08 4.26
97 98 2.741747 GTATGGGGCGGGTAGAGC 59.258 66.667 0.00 0.00 0.00 4.09
98 99 2.214920 GGGTATGGGGCGGGTAGAG 61.215 68.421 0.00 0.00 0.00 2.43
99 100 1.370651 TAGGGTATGGGGCGGGTAGA 61.371 60.000 0.00 0.00 0.00 2.59
100 101 1.156803 TAGGGTATGGGGCGGGTAG 59.843 63.158 0.00 0.00 0.00 3.18
101 102 1.152269 GTAGGGTATGGGGCGGGTA 60.152 63.158 0.00 0.00 0.00 3.69
102 103 2.447186 GTAGGGTATGGGGCGGGT 60.447 66.667 0.00 0.00 0.00 5.28
103 104 3.246880 GGTAGGGTATGGGGCGGG 61.247 72.222 0.00 0.00 0.00 6.13
104 105 3.246880 GGGTAGGGTATGGGGCGG 61.247 72.222 0.00 0.00 0.00 6.13
105 106 1.423794 AATGGGTAGGGTATGGGGCG 61.424 60.000 0.00 0.00 0.00 6.13
106 107 0.112412 CAATGGGTAGGGTATGGGGC 59.888 60.000 0.00 0.00 0.00 5.80
107 108 0.112412 GCAATGGGTAGGGTATGGGG 59.888 60.000 0.00 0.00 0.00 4.96
108 109 0.112412 GGCAATGGGTAGGGTATGGG 59.888 60.000 0.00 0.00 0.00 4.00
109 110 0.850100 TGGCAATGGGTAGGGTATGG 59.150 55.000 0.00 0.00 0.00 2.74
110 111 2.555227 GGATGGCAATGGGTAGGGTATG 60.555 54.545 0.00 0.00 0.00 2.39
111 112 1.710809 GGATGGCAATGGGTAGGGTAT 59.289 52.381 0.00 0.00 0.00 2.73
112 113 1.145571 GGATGGCAATGGGTAGGGTA 58.854 55.000 0.00 0.00 0.00 3.69
113 114 0.627469 AGGATGGCAATGGGTAGGGT 60.627 55.000 0.00 0.00 0.00 4.34
114 115 0.557729 AAGGATGGCAATGGGTAGGG 59.442 55.000 0.00 0.00 0.00 3.53
115 116 1.696063 CAAGGATGGCAATGGGTAGG 58.304 55.000 0.00 0.00 0.00 3.18
116 117 1.035139 GCAAGGATGGCAATGGGTAG 58.965 55.000 0.00 0.00 32.79 3.18
117 118 0.334335 TGCAAGGATGGCAATGGGTA 59.666 50.000 0.00 0.00 46.27 3.69
118 119 1.078891 TGCAAGGATGGCAATGGGT 59.921 52.632 0.00 0.00 46.27 4.51
119 120 4.037441 TGCAAGGATGGCAATGGG 57.963 55.556 0.00 0.00 46.27 4.00
125 126 1.753073 ACTAGCAATTGCAAGGATGGC 59.247 47.619 30.89 1.63 45.16 4.40
126 127 2.480759 GCACTAGCAATTGCAAGGATGG 60.481 50.000 30.89 14.85 45.16 3.51
127 128 2.805845 GCACTAGCAATTGCAAGGATG 58.194 47.619 30.89 20.60 45.16 3.51
150 152 0.109532 TCAATGGGTGAAGACCGCAA 59.890 50.000 0.00 0.00 44.23 4.85
194 196 0.114954 AAATTGAAGCTGAGGGGGCA 59.885 50.000 0.00 0.00 0.00 5.36
214 216 7.551585 TGGCATTTCTAAGAGTTTGTGAAAAA 58.448 30.769 0.00 0.00 31.71 1.94
218 220 6.899393 ATTGGCATTTCTAAGAGTTTGTGA 57.101 33.333 0.00 0.00 0.00 3.58
237 239 3.727673 CGTGCCGACAAACTTGATATTGG 60.728 47.826 0.00 0.00 0.00 3.16
239 241 2.418628 CCGTGCCGACAAACTTGATATT 59.581 45.455 0.00 0.00 0.00 1.28
261 263 0.112995 AGGGCCTTTGTGATGAGCAA 59.887 50.000 0.00 0.00 0.00 3.91
262 264 0.112995 AAGGGCCTTTGTGATGAGCA 59.887 50.000 14.48 0.00 0.00 4.26
263 265 0.529378 CAAGGGCCTTTGTGATGAGC 59.471 55.000 18.16 0.00 0.00 4.26
320 322 0.892063 AGTTCTGCTTCCGGACTCTC 59.108 55.000 1.83 0.00 0.00 3.20
331 333 3.003480 GGTTTATTCTCGCAGTTCTGCT 58.997 45.455 20.12 6.08 0.00 4.24
335 337 3.746492 ACACAGGTTTATTCTCGCAGTTC 59.254 43.478 0.00 0.00 0.00 3.01
336 338 3.498397 CACACAGGTTTATTCTCGCAGTT 59.502 43.478 0.00 0.00 0.00 3.16
337 339 3.067106 CACACAGGTTTATTCTCGCAGT 58.933 45.455 0.00 0.00 0.00 4.40
338 340 2.159653 GCACACAGGTTTATTCTCGCAG 60.160 50.000 0.00 0.00 0.00 5.18
339 341 1.804151 GCACACAGGTTTATTCTCGCA 59.196 47.619 0.00 0.00 0.00 5.10
340 342 1.130561 GGCACACAGGTTTATTCTCGC 59.869 52.381 0.00 0.00 0.00 5.03
341 343 2.416547 CAGGCACACAGGTTTATTCTCG 59.583 50.000 0.00 0.00 0.00 4.04
342 344 3.674997 TCAGGCACACAGGTTTATTCTC 58.325 45.455 0.00 0.00 0.00 2.87
343 345 3.788227 TCAGGCACACAGGTTTATTCT 57.212 42.857 0.00 0.00 0.00 2.40
344 346 4.846779 TTTCAGGCACACAGGTTTATTC 57.153 40.909 0.00 0.00 0.00 1.75
345 347 4.021192 CCATTTCAGGCACACAGGTTTATT 60.021 41.667 0.00 0.00 0.00 1.40
346 348 3.511146 CCATTTCAGGCACACAGGTTTAT 59.489 43.478 0.00 0.00 0.00 1.40
347 349 2.890311 CCATTTCAGGCACACAGGTTTA 59.110 45.455 0.00 0.00 0.00 2.01
354 356 0.598065 GGTGACCATTTCAGGCACAC 59.402 55.000 0.00 0.00 37.40 3.82
378 380 1.669211 GCTTGTCACAGGTCCGTAGTC 60.669 57.143 0.00 0.00 0.00 2.59
380 382 0.317160 TGCTTGTCACAGGTCCGTAG 59.683 55.000 0.00 0.00 0.00 3.51
382 384 0.108585 AATGCTTGTCACAGGTCCGT 59.891 50.000 0.00 0.00 0.00 4.69
383 385 0.798776 GAATGCTTGTCACAGGTCCG 59.201 55.000 0.00 0.00 0.00 4.79
384 386 1.168714 GGAATGCTTGTCACAGGTCC 58.831 55.000 0.00 0.00 0.00 4.46
385 387 1.808945 CAGGAATGCTTGTCACAGGTC 59.191 52.381 0.00 0.00 0.00 3.85
386 388 1.901591 CAGGAATGCTTGTCACAGGT 58.098 50.000 0.00 0.00 0.00 4.00
387 389 0.524862 GCAGGAATGCTTGTCACAGG 59.475 55.000 0.00 0.00 0.00 4.00
388 390 0.524862 GGCAGGAATGCTTGTCACAG 59.475 55.000 0.00 0.00 34.73 3.66
389 391 0.178995 TGGCAGGAATGCTTGTCACA 60.179 50.000 0.00 0.00 30.12 3.58
390 392 0.961019 TTGGCAGGAATGCTTGTCAC 59.039 50.000 0.00 0.00 35.30 3.67
391 393 1.820519 GATTGGCAGGAATGCTTGTCA 59.179 47.619 0.00 0.00 33.58 3.58
392 394 1.135721 GGATTGGCAGGAATGCTTGTC 59.864 52.381 0.00 0.00 34.73 3.18
393 395 1.188863 GGATTGGCAGGAATGCTTGT 58.811 50.000 0.00 0.00 34.73 3.16
394 396 1.134907 GTGGATTGGCAGGAATGCTTG 60.135 52.381 0.00 0.00 34.73 4.01
395 397 1.188863 GTGGATTGGCAGGAATGCTT 58.811 50.000 0.00 0.00 34.73 3.91
396 398 0.333993 AGTGGATTGGCAGGAATGCT 59.666 50.000 0.00 0.00 34.73 3.79
397 399 1.952296 CTAGTGGATTGGCAGGAATGC 59.048 52.381 0.00 0.00 0.00 3.56
398 400 3.287867 ACTAGTGGATTGGCAGGAATG 57.712 47.619 0.00 0.00 0.00 2.67
399 401 4.721776 TCTAACTAGTGGATTGGCAGGAAT 59.278 41.667 0.00 0.00 0.00 3.01
400 402 4.101114 TCTAACTAGTGGATTGGCAGGAA 58.899 43.478 0.00 0.00 0.00 3.36
401 403 3.706594 CTCTAACTAGTGGATTGGCAGGA 59.293 47.826 0.00 0.00 0.00 3.86
402 404 3.706594 TCTCTAACTAGTGGATTGGCAGG 59.293 47.826 0.00 0.00 0.00 4.85
403 405 5.344743 TTCTCTAACTAGTGGATTGGCAG 57.655 43.478 0.00 0.00 0.00 4.85
404 406 5.957771 ATTCTCTAACTAGTGGATTGGCA 57.042 39.130 0.00 0.00 0.00 4.92
405 407 8.910351 AATAATTCTCTAACTAGTGGATTGGC 57.090 34.615 0.00 0.00 30.20 4.52
406 408 9.495572 GGAATAATTCTCTAACTAGTGGATTGG 57.504 37.037 0.00 0.00 30.20 3.16
410 412 8.483758 GGTTGGAATAATTCTCTAACTAGTGGA 58.516 37.037 13.14 0.00 0.00 4.02
411 413 8.265055 TGGTTGGAATAATTCTCTAACTAGTGG 58.735 37.037 13.14 0.00 0.00 4.00
412 414 9.319143 CTGGTTGGAATAATTCTCTAACTAGTG 57.681 37.037 15.60 0.00 30.48 2.74
413 415 9.268282 TCTGGTTGGAATAATTCTCTAACTAGT 57.732 33.333 19.63 0.00 33.34 2.57
416 418 9.981460 AAATCTGGTTGGAATAATTCTCTAACT 57.019 29.630 13.14 0.00 0.00 2.24
418 420 9.973661 TGAAATCTGGTTGGAATAATTCTCTAA 57.026 29.630 0.00 0.00 0.00 2.10
420 422 9.129532 GATGAAATCTGGTTGGAATAATTCTCT 57.870 33.333 0.00 0.00 41.17 3.10
421 423 8.906867 TGATGAAATCTGGTTGGAATAATTCTC 58.093 33.333 0.00 0.00 45.81 2.87
422 424 8.827832 TGATGAAATCTGGTTGGAATAATTCT 57.172 30.769 0.00 0.00 45.81 2.40
424 426 9.826574 CAATGATGAAATCTGGTTGGAATAATT 57.173 29.630 0.00 0.00 45.81 1.40
425 427 8.426489 CCAATGATGAAATCTGGTTGGAATAAT 58.574 33.333 11.08 0.00 45.33 1.28
426 428 7.618907 TCCAATGATGAAATCTGGTTGGAATAA 59.381 33.333 14.33 0.87 46.53 1.40
427 429 7.124721 TCCAATGATGAAATCTGGTTGGAATA 58.875 34.615 14.33 1.10 46.53 1.75
428 430 5.959594 TCCAATGATGAAATCTGGTTGGAAT 59.040 36.000 14.33 0.00 46.53 3.01
429 431 5.331906 TCCAATGATGAAATCTGGTTGGAA 58.668 37.500 14.33 5.00 46.53 3.53
430 432 4.933134 TCCAATGATGAAATCTGGTTGGA 58.067 39.130 13.42 13.42 46.90 3.53
431 433 5.664294 TTCCAATGATGAAATCTGGTTGG 57.336 39.130 10.62 10.62 45.81 3.77
432 434 6.694447 ACTTTCCAATGATGAAATCTGGTTG 58.306 36.000 0.00 0.00 45.81 3.77
433 435 6.923199 ACTTTCCAATGATGAAATCTGGTT 57.077 33.333 0.00 0.00 45.81 3.67
434 436 6.096001 GCTACTTTCCAATGATGAAATCTGGT 59.904 38.462 0.00 0.00 45.81 4.00
435 437 6.095860 TGCTACTTTCCAATGATGAAATCTGG 59.904 38.462 0.00 0.00 45.81 3.86
436 438 7.092137 TGCTACTTTCCAATGATGAAATCTG 57.908 36.000 0.00 0.00 45.81 2.90
437 439 6.888632 ACTGCTACTTTCCAATGATGAAATCT 59.111 34.615 0.00 0.00 45.81 2.40
438 440 7.093322 ACTGCTACTTTCCAATGATGAAATC 57.907 36.000 0.00 0.00 45.83 2.17
439 441 7.831193 ACTACTGCTACTTTCCAATGATGAAAT 59.169 33.333 0.00 0.00 31.75 2.17
440 442 7.119699 CACTACTGCTACTTTCCAATGATGAAA 59.880 37.037 0.00 0.00 0.00 2.69
441 443 6.595326 CACTACTGCTACTTTCCAATGATGAA 59.405 38.462 0.00 0.00 0.00 2.57
442 444 6.070824 TCACTACTGCTACTTTCCAATGATGA 60.071 38.462 0.00 0.00 0.00 2.92
443 445 6.108687 TCACTACTGCTACTTTCCAATGATG 58.891 40.000 0.00 0.00 0.00 3.07
444 446 6.299805 TCACTACTGCTACTTTCCAATGAT 57.700 37.500 0.00 0.00 0.00 2.45
445 447 5.738619 TCACTACTGCTACTTTCCAATGA 57.261 39.130 0.00 0.00 0.00 2.57
446 448 5.877012 ACATCACTACTGCTACTTTCCAATG 59.123 40.000 0.00 0.00 0.00 2.82
447 449 6.054860 ACATCACTACTGCTACTTTCCAAT 57.945 37.500 0.00 0.00 0.00 3.16
448 450 5.483685 ACATCACTACTGCTACTTTCCAA 57.516 39.130 0.00 0.00 0.00 3.53
449 451 5.479306 GAACATCACTACTGCTACTTTCCA 58.521 41.667 0.00 0.00 0.00 3.53
450 452 4.870991 GGAACATCACTACTGCTACTTTCC 59.129 45.833 0.00 0.00 0.00 3.13
451 453 5.578727 CAGGAACATCACTACTGCTACTTTC 59.421 44.000 0.00 0.00 0.00 2.62
452 454 5.246203 TCAGGAACATCACTACTGCTACTTT 59.754 40.000 0.00 0.00 0.00 2.66
453 455 4.772624 TCAGGAACATCACTACTGCTACTT 59.227 41.667 0.00 0.00 0.00 2.24
454 456 4.344978 TCAGGAACATCACTACTGCTACT 58.655 43.478 0.00 0.00 0.00 2.57
455 457 4.720649 TCAGGAACATCACTACTGCTAC 57.279 45.455 0.00 0.00 0.00 3.58
456 458 5.738619 TTTCAGGAACATCACTACTGCTA 57.261 39.130 0.00 0.00 0.00 3.49
457 459 4.623932 TTTCAGGAACATCACTACTGCT 57.376 40.909 0.00 0.00 0.00 4.24
458 460 5.886960 ATTTTCAGGAACATCACTACTGC 57.113 39.130 0.00 0.00 0.00 4.40
459 461 8.322906 TGTTATTTTCAGGAACATCACTACTG 57.677 34.615 0.00 0.00 0.00 2.74
469 471 9.788960 GGACTTTATGATGTTATTTTCAGGAAC 57.211 33.333 0.00 0.00 0.00 3.62
470 472 9.527157 TGGACTTTATGATGTTATTTTCAGGAA 57.473 29.630 0.00 0.00 0.00 3.36
471 473 9.527157 TTGGACTTTATGATGTTATTTTCAGGA 57.473 29.630 0.00 0.00 0.00 3.86
482 484 8.704668 GGGGATTTAATTTGGACTTTATGATGT 58.295 33.333 0.00 0.00 0.00 3.06
483 485 8.150296 GGGGGATTTAATTTGGACTTTATGATG 58.850 37.037 0.00 0.00 0.00 3.07
484 486 8.262601 GGGGGATTTAATTTGGACTTTATGAT 57.737 34.615 0.00 0.00 0.00 2.45
485 487 7.669089 GGGGGATTTAATTTGGACTTTATGA 57.331 36.000 0.00 0.00 0.00 2.15
506 508 0.890996 GCTGATGGCGAATAAGGGGG 60.891 60.000 0.00 0.00 0.00 5.40
507 509 0.890996 GGCTGATGGCGAATAAGGGG 60.891 60.000 0.00 0.00 42.94 4.79
508 510 0.179020 TGGCTGATGGCGAATAAGGG 60.179 55.000 0.00 0.00 42.94 3.95
509 511 1.901591 ATGGCTGATGGCGAATAAGG 58.098 50.000 0.00 0.00 42.94 2.69
510 512 5.633830 AATAATGGCTGATGGCGAATAAG 57.366 39.130 0.00 0.00 42.94 1.73
511 513 5.414454 GGTAATAATGGCTGATGGCGAATAA 59.586 40.000 0.00 0.00 42.94 1.40
512 514 4.941263 GGTAATAATGGCTGATGGCGAATA 59.059 41.667 0.00 0.00 42.94 1.75
513 515 3.758554 GGTAATAATGGCTGATGGCGAAT 59.241 43.478 0.00 0.00 42.94 3.34
514 516 3.146066 GGTAATAATGGCTGATGGCGAA 58.854 45.455 0.00 0.00 42.94 4.70
515 517 2.552155 GGGTAATAATGGCTGATGGCGA 60.552 50.000 0.00 0.00 42.94 5.54
516 518 1.812571 GGGTAATAATGGCTGATGGCG 59.187 52.381 0.00 0.00 42.94 5.69
517 519 2.171003 GGGGTAATAATGGCTGATGGC 58.829 52.381 0.00 0.00 40.90 4.40
518 520 2.379907 AGGGGGTAATAATGGCTGATGG 59.620 50.000 0.00 0.00 0.00 3.51
519 521 3.814504 AGGGGGTAATAATGGCTGATG 57.185 47.619 0.00 0.00 0.00 3.07
520 522 4.420214 AGAAAGGGGGTAATAATGGCTGAT 59.580 41.667 0.00 0.00 0.00 2.90
521 523 3.791545 AGAAAGGGGGTAATAATGGCTGA 59.208 43.478 0.00 0.00 0.00 4.26
522 524 4.184649 AGAAAGGGGGTAATAATGGCTG 57.815 45.455 0.00 0.00 0.00 4.85
523 525 4.982302 AGTAGAAAGGGGGTAATAATGGCT 59.018 41.667 0.00 0.00 0.00 4.75
524 526 5.073280 AGAGTAGAAAGGGGGTAATAATGGC 59.927 44.000 0.00 0.00 0.00 4.40
525 527 6.765355 AGAGTAGAAAGGGGGTAATAATGG 57.235 41.667 0.00 0.00 0.00 3.16
526 528 7.574607 ACAAGAGTAGAAAGGGGGTAATAATG 58.425 38.462 0.00 0.00 0.00 1.90
527 529 7.766736 ACAAGAGTAGAAAGGGGGTAATAAT 57.233 36.000 0.00 0.00 0.00 1.28
528 530 7.679453 TGTACAAGAGTAGAAAGGGGGTAATAA 59.321 37.037 0.00 0.00 0.00 1.40
529 531 7.191210 TGTACAAGAGTAGAAAGGGGGTAATA 58.809 38.462 0.00 0.00 0.00 0.98
530 532 6.027482 TGTACAAGAGTAGAAAGGGGGTAAT 58.973 40.000 0.00 0.00 0.00 1.89
531 533 5.405279 TGTACAAGAGTAGAAAGGGGGTAA 58.595 41.667 0.00 0.00 0.00 2.85
532 534 5.014534 TGTACAAGAGTAGAAAGGGGGTA 57.985 43.478 0.00 0.00 0.00 3.69
533 535 3.838903 CTGTACAAGAGTAGAAAGGGGGT 59.161 47.826 0.00 0.00 0.00 4.95
534 536 4.081586 GTCTGTACAAGAGTAGAAAGGGGG 60.082 50.000 0.00 0.00 34.84 5.40
535 537 4.081586 GGTCTGTACAAGAGTAGAAAGGGG 60.082 50.000 0.00 0.00 34.84 4.79
536 538 4.527038 TGGTCTGTACAAGAGTAGAAAGGG 59.473 45.833 0.00 0.00 34.84 3.95
537 539 5.244178 AGTGGTCTGTACAAGAGTAGAAAGG 59.756 44.000 0.00 0.00 34.84 3.11
538 540 6.153067 CAGTGGTCTGTACAAGAGTAGAAAG 58.847 44.000 0.00 0.00 34.84 2.62
539 541 6.085555 CAGTGGTCTGTACAAGAGTAGAAA 57.914 41.667 0.00 0.00 34.84 2.52
540 542 5.707242 CAGTGGTCTGTACAAGAGTAGAA 57.293 43.478 0.00 0.00 34.84 2.10
553 555 0.322975 AGCAGGCTTACAGTGGTCTG 59.677 55.000 0.00 5.82 46.18 3.51
554 556 1.938585 TAGCAGGCTTACAGTGGTCT 58.061 50.000 0.00 0.00 0.00 3.85
555 557 2.990066 ATAGCAGGCTTACAGTGGTC 57.010 50.000 0.00 0.00 0.00 4.02
556 558 3.264450 AGAAATAGCAGGCTTACAGTGGT 59.736 43.478 0.00 0.00 0.00 4.16
557 559 3.624861 CAGAAATAGCAGGCTTACAGTGG 59.375 47.826 0.00 0.00 0.00 4.00
558 560 3.064545 GCAGAAATAGCAGGCTTACAGTG 59.935 47.826 0.00 0.00 0.00 3.66
559 561 3.274288 GCAGAAATAGCAGGCTTACAGT 58.726 45.455 0.00 0.00 0.00 3.55
560 562 2.286294 CGCAGAAATAGCAGGCTTACAG 59.714 50.000 0.00 0.00 0.00 2.74
561 563 2.279741 CGCAGAAATAGCAGGCTTACA 58.720 47.619 0.00 0.00 0.00 2.41
562 564 2.280628 ACGCAGAAATAGCAGGCTTAC 58.719 47.619 0.00 0.00 0.00 2.34
563 565 2.691409 ACGCAGAAATAGCAGGCTTA 57.309 45.000 0.00 0.00 0.00 3.09
564 566 2.691409 TACGCAGAAATAGCAGGCTT 57.309 45.000 0.00 0.00 0.00 4.35
565 567 2.548920 GGATACGCAGAAATAGCAGGCT 60.549 50.000 0.00 0.00 0.00 4.58
566 568 1.801178 GGATACGCAGAAATAGCAGGC 59.199 52.381 0.00 0.00 0.00 4.85
567 569 3.062763 CAGGATACGCAGAAATAGCAGG 58.937 50.000 0.00 0.00 46.39 4.85
568 570 3.722147 ACAGGATACGCAGAAATAGCAG 58.278 45.455 0.00 0.00 46.39 4.24
569 571 3.819564 ACAGGATACGCAGAAATAGCA 57.180 42.857 0.00 0.00 46.39 3.49
570 572 5.485662 AAAACAGGATACGCAGAAATAGC 57.514 39.130 0.00 0.00 46.39 2.97
571 573 8.594881 AGATAAAACAGGATACGCAGAAATAG 57.405 34.615 0.00 0.00 46.39 1.73
572 574 8.958119 AAGATAAAACAGGATACGCAGAAATA 57.042 30.769 0.00 0.00 46.39 1.40
573 575 7.865706 AAGATAAAACAGGATACGCAGAAAT 57.134 32.000 0.00 0.00 46.39 2.17
574 576 8.958119 ATAAGATAAAACAGGATACGCAGAAA 57.042 30.769 0.00 0.00 46.39 2.52
575 577 8.826710 CAATAAGATAAAACAGGATACGCAGAA 58.173 33.333 0.00 0.00 46.39 3.02
576 578 7.441157 CCAATAAGATAAAACAGGATACGCAGA 59.559 37.037 0.00 0.00 46.39 4.26
577 579 7.226720 ACCAATAAGATAAAACAGGATACGCAG 59.773 37.037 0.00 0.00 46.39 5.18
578 580 7.051623 ACCAATAAGATAAAACAGGATACGCA 58.948 34.615 0.00 0.00 46.39 5.24
579 581 7.492352 ACCAATAAGATAAAACAGGATACGC 57.508 36.000 0.00 0.00 46.39 4.42
582 584 9.569122 GGCTTACCAATAAGATAAAACAGGATA 57.431 33.333 0.00 0.00 40.38 2.59
583 585 8.282256 AGGCTTACCAATAAGATAAAACAGGAT 58.718 33.333 0.00 0.00 40.38 3.24
584 586 7.639378 AGGCTTACCAATAAGATAAAACAGGA 58.361 34.615 0.00 0.00 40.38 3.86
585 587 7.881775 AGGCTTACCAATAAGATAAAACAGG 57.118 36.000 0.00 0.00 40.38 4.00
587 589 9.969001 AGTTAGGCTTACCAATAAGATAAAACA 57.031 29.630 0.00 0.00 40.38 2.83
589 591 9.623000 GGAGTTAGGCTTACCAATAAGATAAAA 57.377 33.333 0.00 0.00 40.38 1.52
590 592 7.929785 CGGAGTTAGGCTTACCAATAAGATAAA 59.070 37.037 0.00 0.00 40.38 1.40
591 593 7.439381 CGGAGTTAGGCTTACCAATAAGATAA 58.561 38.462 0.00 0.00 40.38 1.75
592 594 6.517864 GCGGAGTTAGGCTTACCAATAAGATA 60.518 42.308 0.00 0.00 40.38 1.98
593 595 5.742255 GCGGAGTTAGGCTTACCAATAAGAT 60.742 44.000 0.00 0.00 40.38 2.40
594 596 4.442472 GCGGAGTTAGGCTTACCAATAAGA 60.442 45.833 0.00 0.00 40.38 2.10
595 597 3.808174 GCGGAGTTAGGCTTACCAATAAG 59.192 47.826 0.00 0.00 40.83 1.73
596 598 3.432608 GGCGGAGTTAGGCTTACCAATAA 60.433 47.826 0.00 0.00 39.06 1.40
597 599 2.103601 GGCGGAGTTAGGCTTACCAATA 59.896 50.000 0.00 0.00 39.06 1.90
598 600 1.134189 GGCGGAGTTAGGCTTACCAAT 60.134 52.381 0.00 0.00 39.06 3.16
599 601 0.251073 GGCGGAGTTAGGCTTACCAA 59.749 55.000 0.00 0.00 39.06 3.67
600 602 0.616679 AGGCGGAGTTAGGCTTACCA 60.617 55.000 0.00 0.00 42.06 3.25
601 603 1.406903 TAGGCGGAGTTAGGCTTACC 58.593 55.000 0.00 0.00 44.32 2.85
602 604 2.364647 ACATAGGCGGAGTTAGGCTTAC 59.635 50.000 0.00 0.00 44.32 2.34
603 605 2.674420 ACATAGGCGGAGTTAGGCTTA 58.326 47.619 0.00 0.00 44.32 3.09
604 606 1.497161 ACATAGGCGGAGTTAGGCTT 58.503 50.000 0.00 0.00 44.32 4.35
605 607 2.376695 TACATAGGCGGAGTTAGGCT 57.623 50.000 0.00 0.00 46.54 4.58
606 608 3.006537 TGATTACATAGGCGGAGTTAGGC 59.993 47.826 0.00 0.00 0.00 3.93
607 609 4.866508 TGATTACATAGGCGGAGTTAGG 57.133 45.455 0.00 0.00 0.00 2.69
608 610 6.421202 GTCTTTGATTACATAGGCGGAGTTAG 59.579 42.308 0.00 0.00 0.00 2.34
609 611 6.278363 GTCTTTGATTACATAGGCGGAGTTA 58.722 40.000 0.00 0.00 0.00 2.24
610 612 5.116882 GTCTTTGATTACATAGGCGGAGTT 58.883 41.667 0.00 0.00 0.00 3.01
611 613 4.694339 GTCTTTGATTACATAGGCGGAGT 58.306 43.478 0.00 0.00 0.00 3.85
612 614 3.736252 CGTCTTTGATTACATAGGCGGAG 59.264 47.826 0.00 0.00 44.67 4.63
613 615 3.713288 CGTCTTTGATTACATAGGCGGA 58.287 45.455 0.00 0.00 44.67 5.54
614 616 2.221055 GCGTCTTTGATTACATAGGCGG 59.779 50.000 13.90 0.69 46.95 6.13
616 618 5.207768 CAATGCGTCTTTGATTACATAGGC 58.792 41.667 0.00 0.00 0.00 3.93
617 619 5.207768 GCAATGCGTCTTTGATTACATAGG 58.792 41.667 0.00 0.00 0.00 2.57
618 620 5.207768 GGCAATGCGTCTTTGATTACATAG 58.792 41.667 0.00 0.00 0.00 2.23
619 621 4.036262 GGGCAATGCGTCTTTGATTACATA 59.964 41.667 0.00 0.00 0.00 2.29
620 622 3.181487 GGGCAATGCGTCTTTGATTACAT 60.181 43.478 0.00 0.00 0.00 2.29
673 675 5.716094 ACATGTACGTACAATTACAGCTCA 58.284 37.500 30.46 4.57 39.99 4.26
711 713 5.717078 AGCGGATTATTATACCGTCTTCA 57.283 39.130 0.00 0.00 46.95 3.02
1059 1073 6.622549 AGATACTACTCGAACTGTTCCTTTG 58.377 40.000 14.48 1.27 0.00 2.77
1166 1181 7.169140 GTCGCAAAGTTGAAACCAAGAAATATT 59.831 33.333 0.00 0.00 0.00 1.28
1357 2180 4.848562 TTCTGTTTAGTCGAGCTTCTCA 57.151 40.909 0.00 0.00 0.00 3.27
1774 2990 8.830580 CAAATCTTCGCTATCCTTCAAATCTTA 58.169 33.333 0.00 0.00 0.00 2.10
2320 3545 5.957774 ACCCCTTTTGTTATTCTATGTGCAT 59.042 36.000 0.00 0.00 0.00 3.96
2352 3577 7.202016 TGGTATTGTTGAAACTAGCTTGAAG 57.798 36.000 1.04 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.