Multiple sequence alignment - TraesCS4A01G456800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G456800 chr4A 100.000 2499 0 0 1 2499 721928770 721926272 0.000000e+00 4615.0
1 TraesCS4A01G456800 chr4A 91.883 924 51 4 914 1828 577972976 577972068 0.000000e+00 1269.0
2 TraesCS4A01G456800 chr4A 93.370 362 23 1 1862 2222 577972096 577971735 3.660000e-148 534.0
3 TraesCS4A01G456800 chr4A 90.365 301 28 1 1 300 722087619 722087319 6.480000e-106 394.0
4 TraesCS4A01G456800 chr4A 90.365 301 28 1 1 300 722105003 722104703 6.480000e-106 394.0
5 TraesCS4A01G456800 chr4A 88.629 299 16 11 599 879 577973474 577973176 5.120000e-92 348.0
6 TraesCS4A01G456800 chr4A 91.593 226 19 0 11 236 721953036 721952811 1.870000e-81 313.0
7 TraesCS4A01G456800 chr4A 95.172 145 7 0 2218 2362 577970075 577969931 1.930000e-56 230.0
8 TraesCS4A01G456800 chr2B 98.002 1902 27 3 599 2499 112470278 112472169 0.000000e+00 3291.0
9 TraesCS4A01G456800 chr2B 89.461 854 47 19 1660 2499 764414247 764415071 0.000000e+00 1038.0
10 TraesCS4A01G456800 chr5B 88.191 1846 110 45 597 2407 680539830 680541602 0.000000e+00 2102.0
11 TraesCS4A01G456800 chr5B 89.161 1633 94 35 884 2499 455801316 455799750 0.000000e+00 1958.0
12 TraesCS4A01G456800 chr5B 92.746 193 13 1 2307 2499 680541571 680541762 6.810000e-71 278.0
13 TraesCS4A01G456800 chr1B 93.757 945 40 5 597 1523 655062011 655062954 0.000000e+00 1400.0
14 TraesCS4A01G456800 chr1B 97.826 46 1 0 1548 1593 655062953 655062998 2.060000e-11 80.5
15 TraesCS4A01G456800 chr2D 90.975 964 46 8 903 1825 441853209 441854172 0.000000e+00 1260.0
16 TraesCS4A01G456800 chr2D 95.896 268 10 1 2096 2362 441863022 441863289 1.370000e-117 433.0
17 TraesCS4A01G456800 chr2D 97.095 241 7 0 1862 2102 441854147 441854387 8.320000e-110 407.0
18 TraesCS4A01G456800 chr2D 93.651 189 12 0 599 787 441852723 441852911 1.460000e-72 283.0
19 TraesCS4A01G456800 chr2D 95.789 95 2 1 2405 2499 441863283 441863375 4.310000e-33 152.0
20 TraesCS4A01G456800 chr2A 89.957 936 51 13 932 1825 707237355 707238289 0.000000e+00 1168.0
21 TraesCS4A01G456800 chr2A 94.622 502 20 3 1862 2362 707238264 707238759 0.000000e+00 771.0
22 TraesCS4A01G456800 chr2A 96.373 193 6 1 596 787 707236780 707236972 1.440000e-82 316.0
23 TraesCS4A01G456800 chr2A 94.737 95 3 1 2405 2499 707238753 707238845 2.000000e-31 147.0
24 TraesCS4A01G456800 chr5D 85.996 1014 92 26 599 1573 448810011 448809009 0.000000e+00 1040.0
25 TraesCS4A01G456800 chr5D 88.692 734 54 13 840 1569 384337368 384336660 0.000000e+00 869.0
26 TraesCS4A01G456800 chr5D 89.346 657 37 16 1859 2499 384266524 384265885 0.000000e+00 795.0
27 TraesCS4A01G456800 chr5D 89.796 294 18 6 1719 2001 448808840 448808548 1.410000e-97 366.0
28 TraesCS4A01G456800 chr5D 93.467 199 12 1 591 788 384337633 384337435 6.760000e-76 294.0
29 TraesCS4A01G456800 chr5D 76.793 237 24 12 1503 1726 489051147 489050929 1.220000e-18 104.0
30 TraesCS4A01G456800 chr5D 89.552 67 2 1 1660 1726 448808938 448808877 2.060000e-11 80.5
31 TraesCS4A01G456800 chr7D 84.111 1007 99 41 595 1568 41109174 41110152 0.000000e+00 917.0
32 TraesCS4A01G456800 chr7D 86.822 774 46 25 1732 2499 41110340 41111063 0.000000e+00 813.0
33 TraesCS4A01G456800 chr7D 80.693 202 22 9 3 188 14658999 14659199 9.320000e-30 141.0
34 TraesCS4A01G456800 chr3B 83.026 760 103 19 816 1568 485687710 485686970 0.000000e+00 665.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G456800 chr4A 721926272 721928770 2498 True 4615.00 4615 100.00000 1 2499 1 chr4A.!!$R1 2498
1 TraesCS4A01G456800 chr4A 577969931 577973474 3543 True 595.25 1269 92.26350 599 2362 4 chr4A.!!$R5 1763
2 TraesCS4A01G456800 chr2B 112470278 112472169 1891 False 3291.00 3291 98.00200 599 2499 1 chr2B.!!$F1 1900
3 TraesCS4A01G456800 chr2B 764414247 764415071 824 False 1038.00 1038 89.46100 1660 2499 1 chr2B.!!$F2 839
4 TraesCS4A01G456800 chr5B 455799750 455801316 1566 True 1958.00 1958 89.16100 884 2499 1 chr5B.!!$R1 1615
5 TraesCS4A01G456800 chr5B 680539830 680541762 1932 False 1190.00 2102 90.46850 597 2499 2 chr5B.!!$F1 1902
6 TraesCS4A01G456800 chr1B 655062011 655062998 987 False 740.25 1400 95.79150 597 1593 2 chr1B.!!$F1 996
7 TraesCS4A01G456800 chr2D 441852723 441854387 1664 False 650.00 1260 93.90700 599 2102 3 chr2D.!!$F1 1503
8 TraesCS4A01G456800 chr2A 707236780 707238845 2065 False 600.50 1168 93.92225 596 2499 4 chr2A.!!$F1 1903
9 TraesCS4A01G456800 chr5D 384265885 384266524 639 True 795.00 795 89.34600 1859 2499 1 chr5D.!!$R1 640
10 TraesCS4A01G456800 chr5D 384336660 384337633 973 True 581.50 869 91.07950 591 1569 2 chr5D.!!$R3 978
11 TraesCS4A01G456800 chr5D 448808548 448810011 1463 True 495.50 1040 88.44800 599 2001 3 chr5D.!!$R4 1402
12 TraesCS4A01G456800 chr7D 41109174 41111063 1889 False 865.00 917 85.46650 595 2499 2 chr7D.!!$F2 1904
13 TraesCS4A01G456800 chr3B 485686970 485687710 740 True 665.00 665 83.02600 816 1568 1 chr3B.!!$R1 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 583 0.031716 AGCTACATCTCCTCCCTGCA 60.032 55.0 0.00 0.00 0.0 4.41 F
583 584 0.392336 GCTACATCTCCTCCCTGCAG 59.608 60.0 6.78 6.78 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1720 1.028868 GGTCTTCACTGCATCTGCCC 61.029 60.000 0.0 0.0 41.18 5.36 R
2209 2649 1.064758 ACTTGTGGAACTGCTGGAACA 60.065 47.619 0.0 0.0 38.04 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.125978 ACATATTTGAATGTGAAGGATTGTGT 57.874 30.769 7.35 0.00 38.65 3.72
36 37 8.587608 ACATATTTGAATGTGAAGGATTGTGTT 58.412 29.630 7.35 0.00 38.65 3.32
37 38 8.865978 CATATTTGAATGTGAAGGATTGTGTTG 58.134 33.333 0.00 0.00 30.04 3.33
38 39 5.850557 TTGAATGTGAAGGATTGTGTTGT 57.149 34.783 0.00 0.00 0.00 3.32
39 40 6.951062 TTGAATGTGAAGGATTGTGTTGTA 57.049 33.333 0.00 0.00 0.00 2.41
40 41 6.312399 TGAATGTGAAGGATTGTGTTGTAC 57.688 37.500 0.00 0.00 0.00 2.90
41 42 5.240623 TGAATGTGAAGGATTGTGTTGTACC 59.759 40.000 0.00 0.00 0.00 3.34
42 43 4.431416 TGTGAAGGATTGTGTTGTACCT 57.569 40.909 0.00 0.00 0.00 3.08
43 44 5.554437 TGTGAAGGATTGTGTTGTACCTA 57.446 39.130 0.00 0.00 0.00 3.08
44 45 5.547465 TGTGAAGGATTGTGTTGTACCTAG 58.453 41.667 0.00 0.00 0.00 3.02
45 46 4.935808 GTGAAGGATTGTGTTGTACCTAGG 59.064 45.833 7.41 7.41 0.00 3.02
46 47 4.841813 TGAAGGATTGTGTTGTACCTAGGA 59.158 41.667 17.98 0.00 0.00 2.94
47 48 5.046591 TGAAGGATTGTGTTGTACCTAGGAG 60.047 44.000 17.98 0.00 0.00 3.69
48 49 4.684724 AGGATTGTGTTGTACCTAGGAGA 58.315 43.478 17.98 0.00 0.00 3.71
49 50 5.091552 AGGATTGTGTTGTACCTAGGAGAA 58.908 41.667 17.98 1.04 0.00 2.87
50 51 5.046520 AGGATTGTGTTGTACCTAGGAGAAC 60.047 44.000 17.98 13.94 0.00 3.01
51 52 5.046520 GGATTGTGTTGTACCTAGGAGAACT 60.047 44.000 17.98 0.00 0.00 3.01
52 53 5.464030 TTGTGTTGTACCTAGGAGAACTC 57.536 43.478 17.98 14.15 0.00 3.01
53 54 4.737578 TGTGTTGTACCTAGGAGAACTCT 58.262 43.478 17.98 0.00 0.00 3.24
54 55 4.765856 TGTGTTGTACCTAGGAGAACTCTC 59.234 45.833 17.98 9.26 42.14 3.20
64 65 1.828979 GAGAACTCTCCCACTCGAGT 58.171 55.000 13.58 13.58 41.97 4.18
65 66 1.470890 GAGAACTCTCCCACTCGAGTG 59.529 57.143 33.87 33.87 40.18 3.51
66 67 2.876485 GAGAACTCTCCCACTCGAGTGA 60.876 54.545 40.21 23.93 41.39 3.41
67 68 4.367707 GAGAACTCTCCCACTCGAGTGAA 61.368 52.174 40.21 27.51 41.39 3.18
68 69 6.157585 GAGAACTCTCCCACTCGAGTGAAG 62.158 54.167 40.21 33.33 41.39 3.02
79 80 4.742417 ACTCGAGTGAAGAATCAGATGTG 58.258 43.478 19.30 0.00 35.88 3.21
80 81 4.219507 ACTCGAGTGAAGAATCAGATGTGT 59.780 41.667 19.30 0.00 35.88 3.72
81 82 5.416013 ACTCGAGTGAAGAATCAGATGTGTA 59.584 40.000 19.30 0.00 35.88 2.90
82 83 6.096141 ACTCGAGTGAAGAATCAGATGTGTAT 59.904 38.462 19.30 0.00 35.88 2.29
83 84 7.283354 ACTCGAGTGAAGAATCAGATGTGTATA 59.717 37.037 19.30 0.00 35.88 1.47
84 85 8.171164 TCGAGTGAAGAATCAGATGTGTATAT 57.829 34.615 0.00 0.00 35.88 0.86
85 86 9.284968 TCGAGTGAAGAATCAGATGTGTATATA 57.715 33.333 0.00 0.00 35.88 0.86
86 87 9.899226 CGAGTGAAGAATCAGATGTGTATATAA 57.101 33.333 0.00 0.00 35.88 0.98
88 89 9.703892 AGTGAAGAATCAGATGTGTATATAAGC 57.296 33.333 0.00 0.00 35.88 3.09
89 90 9.481340 GTGAAGAATCAGATGTGTATATAAGCA 57.519 33.333 0.00 0.00 35.88 3.91
92 93 8.489990 AGAATCAGATGTGTATATAAGCATGC 57.510 34.615 10.51 10.51 0.00 4.06
93 94 8.098912 AGAATCAGATGTGTATATAAGCATGCA 58.901 33.333 21.98 0.00 0.00 3.96
94 95 7.606858 ATCAGATGTGTATATAAGCATGCAC 57.393 36.000 21.98 8.62 40.65 4.57
98 99 4.775236 TGTGTATATAAGCATGCACACCA 58.225 39.130 25.19 15.08 43.67 4.17
99 100 5.189180 TGTGTATATAAGCATGCACACCAA 58.811 37.500 25.19 11.56 43.67 3.67
100 101 5.649831 TGTGTATATAAGCATGCACACCAAA 59.350 36.000 25.19 11.01 43.67 3.28
101 102 6.320926 TGTGTATATAAGCATGCACACCAAAT 59.679 34.615 25.19 11.36 43.67 2.32
102 103 7.500559 TGTGTATATAAGCATGCACACCAAATA 59.499 33.333 25.19 10.44 43.67 1.40
103 104 8.349245 GTGTATATAAGCATGCACACCAAATAA 58.651 33.333 21.98 0.00 40.17 1.40
104 105 8.907885 TGTATATAAGCATGCACACCAAATAAA 58.092 29.630 21.98 0.77 0.00 1.40
105 106 9.398170 GTATATAAGCATGCACACCAAATAAAG 57.602 33.333 21.98 0.00 0.00 1.85
106 107 3.598019 AGCATGCACACCAAATAAAGG 57.402 42.857 21.98 0.00 0.00 3.11
107 108 3.164268 AGCATGCACACCAAATAAAGGA 58.836 40.909 21.98 0.00 0.00 3.36
108 109 3.056607 AGCATGCACACCAAATAAAGGAC 60.057 43.478 21.98 0.00 0.00 3.85
109 110 3.305950 GCATGCACACCAAATAAAGGACA 60.306 43.478 14.21 0.00 0.00 4.02
110 111 4.621274 GCATGCACACCAAATAAAGGACAT 60.621 41.667 14.21 0.00 0.00 3.06
111 112 4.517952 TGCACACCAAATAAAGGACATG 57.482 40.909 0.00 0.00 0.00 3.21
112 113 4.148079 TGCACACCAAATAAAGGACATGA 58.852 39.130 0.00 0.00 0.00 3.07
113 114 4.771577 TGCACACCAAATAAAGGACATGAT 59.228 37.500 0.00 0.00 0.00 2.45
114 115 5.948758 TGCACACCAAATAAAGGACATGATA 59.051 36.000 0.00 0.00 0.00 2.15
115 116 6.127758 TGCACACCAAATAAAGGACATGATAC 60.128 38.462 0.00 0.00 0.00 2.24
116 117 6.095440 GCACACCAAATAAAGGACATGATACT 59.905 38.462 0.00 0.00 0.00 2.12
117 118 7.475015 CACACCAAATAAAGGACATGATACTG 58.525 38.462 0.00 0.00 0.00 2.74
118 119 7.121168 CACACCAAATAAAGGACATGATACTGT 59.879 37.037 0.00 0.00 0.00 3.55
119 120 7.669722 ACACCAAATAAAGGACATGATACTGTT 59.330 33.333 0.00 0.00 0.00 3.16
120 121 7.970061 CACCAAATAAAGGACATGATACTGTTG 59.030 37.037 0.00 0.00 0.00 3.33
121 122 7.669722 ACCAAATAAAGGACATGATACTGTTGT 59.330 33.333 0.00 0.00 0.00 3.32
122 123 8.522830 CCAAATAAAGGACATGATACTGTTGTT 58.477 33.333 0.00 0.00 0.00 2.83
123 124 9.912634 CAAATAAAGGACATGATACTGTTGTTT 57.087 29.630 0.00 1.40 0.00 2.83
124 125 9.912634 AAATAAAGGACATGATACTGTTGTTTG 57.087 29.630 0.00 0.00 0.00 2.93
125 126 5.964958 AAGGACATGATACTGTTGTTTGG 57.035 39.130 0.00 0.00 0.00 3.28
126 127 5.241403 AGGACATGATACTGTTGTTTGGA 57.759 39.130 0.00 0.00 0.00 3.53
127 128 5.630121 AGGACATGATACTGTTGTTTGGAA 58.370 37.500 0.00 0.00 0.00 3.53
128 129 5.707298 AGGACATGATACTGTTGTTTGGAAG 59.293 40.000 0.00 0.00 0.00 3.46
129 130 5.473504 GGACATGATACTGTTGTTTGGAAGT 59.526 40.000 0.00 0.00 0.00 3.01
130 131 6.016276 GGACATGATACTGTTGTTTGGAAGTT 60.016 38.462 0.00 0.00 0.00 2.66
131 132 7.346751 ACATGATACTGTTGTTTGGAAGTTT 57.653 32.000 0.00 0.00 0.00 2.66
132 133 7.202526 ACATGATACTGTTGTTTGGAAGTTTG 58.797 34.615 0.00 0.00 0.00 2.93
133 134 6.767524 TGATACTGTTGTTTGGAAGTTTGT 57.232 33.333 0.00 0.00 0.00 2.83
134 135 7.164230 TGATACTGTTGTTTGGAAGTTTGTT 57.836 32.000 0.00 0.00 0.00 2.83
135 136 7.032580 TGATACTGTTGTTTGGAAGTTTGTTG 58.967 34.615 0.00 0.00 0.00 3.33
136 137 4.565022 ACTGTTGTTTGGAAGTTTGTTGG 58.435 39.130 0.00 0.00 0.00 3.77
137 138 4.282195 ACTGTTGTTTGGAAGTTTGTTGGA 59.718 37.500 0.00 0.00 0.00 3.53
138 139 5.046663 ACTGTTGTTTGGAAGTTTGTTGGAT 60.047 36.000 0.00 0.00 0.00 3.41
139 140 5.415221 TGTTGTTTGGAAGTTTGTTGGATC 58.585 37.500 0.00 0.00 0.00 3.36
140 141 5.047021 TGTTGTTTGGAAGTTTGTTGGATCA 60.047 36.000 0.00 0.00 0.00 2.92
141 142 5.867903 TGTTTGGAAGTTTGTTGGATCAT 57.132 34.783 0.00 0.00 0.00 2.45
142 143 5.841810 TGTTTGGAAGTTTGTTGGATCATC 58.158 37.500 0.00 0.00 0.00 2.92
143 144 5.362143 TGTTTGGAAGTTTGTTGGATCATCA 59.638 36.000 0.00 0.00 0.00 3.07
144 145 6.127225 TGTTTGGAAGTTTGTTGGATCATCAA 60.127 34.615 0.00 0.00 0.00 2.57
145 146 6.669125 TTGGAAGTTTGTTGGATCATCAAT 57.331 33.333 0.00 0.00 0.00 2.57
146 147 7.773489 TTGGAAGTTTGTTGGATCATCAATA 57.227 32.000 0.00 0.00 0.00 1.90
147 148 7.156876 TGGAAGTTTGTTGGATCATCAATAC 57.843 36.000 0.00 0.00 0.00 1.89
148 149 6.947733 TGGAAGTTTGTTGGATCATCAATACT 59.052 34.615 0.00 1.75 0.00 2.12
149 150 8.106462 TGGAAGTTTGTTGGATCATCAATACTA 58.894 33.333 0.00 0.00 0.00 1.82
150 151 9.125026 GGAAGTTTGTTGGATCATCAATACTAT 57.875 33.333 0.00 0.00 0.00 2.12
168 169 9.573133 CAATACTATTTTGAATTCACCTTGTCC 57.427 33.333 7.89 0.00 0.00 4.02
169 170 9.533831 AATACTATTTTGAATTCACCTTGTCCT 57.466 29.630 7.89 0.00 0.00 3.85
171 172 8.934023 ACTATTTTGAATTCACCTTGTCCTAA 57.066 30.769 7.89 0.00 0.00 2.69
172 173 8.793592 ACTATTTTGAATTCACCTTGTCCTAAC 58.206 33.333 7.89 0.00 0.00 2.34
173 174 7.595819 ATTTTGAATTCACCTTGTCCTAACA 57.404 32.000 7.89 0.00 0.00 2.41
174 175 7.595819 TTTTGAATTCACCTTGTCCTAACAT 57.404 32.000 7.89 0.00 34.73 2.71
175 176 8.698973 TTTTGAATTCACCTTGTCCTAACATA 57.301 30.769 7.89 0.00 34.73 2.29
176 177 7.681939 TTGAATTCACCTTGTCCTAACATAC 57.318 36.000 7.89 0.00 34.73 2.39
177 178 7.016153 TGAATTCACCTTGTCCTAACATACT 57.984 36.000 3.38 0.00 34.73 2.12
178 179 6.878923 TGAATTCACCTTGTCCTAACATACTG 59.121 38.462 3.38 0.00 34.73 2.74
179 180 5.818678 TTCACCTTGTCCTAACATACTGT 57.181 39.130 0.00 0.00 34.73 3.55
180 181 6.921486 TTCACCTTGTCCTAACATACTGTA 57.079 37.500 0.00 0.00 34.73 2.74
181 182 6.921486 TCACCTTGTCCTAACATACTGTAA 57.079 37.500 0.00 0.00 34.73 2.41
182 183 7.305813 TCACCTTGTCCTAACATACTGTAAA 57.694 36.000 0.00 0.00 34.73 2.01
183 184 7.156673 TCACCTTGTCCTAACATACTGTAAAC 58.843 38.462 0.00 0.00 34.73 2.01
184 185 6.932400 CACCTTGTCCTAACATACTGTAAACA 59.068 38.462 0.00 0.00 34.73 2.83
185 186 7.606456 CACCTTGTCCTAACATACTGTAAACAT 59.394 37.037 0.00 0.00 34.73 2.71
186 187 8.818860 ACCTTGTCCTAACATACTGTAAACATA 58.181 33.333 0.00 0.00 34.73 2.29
187 188 9.832445 CCTTGTCCTAACATACTGTAAACATAT 57.168 33.333 0.00 0.00 34.73 1.78
232 233 8.779354 AAAGGTTAGTAGTAAAATGCTCTCTG 57.221 34.615 0.00 0.00 0.00 3.35
233 234 7.719871 AGGTTAGTAGTAAAATGCTCTCTGA 57.280 36.000 0.00 0.00 0.00 3.27
234 235 8.135382 AGGTTAGTAGTAAAATGCTCTCTGAA 57.865 34.615 0.00 0.00 0.00 3.02
235 236 8.035984 AGGTTAGTAGTAAAATGCTCTCTGAAC 58.964 37.037 0.00 0.00 0.00 3.18
236 237 8.035984 GGTTAGTAGTAAAATGCTCTCTGAACT 58.964 37.037 0.00 0.00 0.00 3.01
237 238 9.425577 GTTAGTAGTAAAATGCTCTCTGAACTT 57.574 33.333 0.00 0.00 0.00 2.66
238 239 7.897575 AGTAGTAAAATGCTCTCTGAACTTG 57.102 36.000 0.00 0.00 0.00 3.16
239 240 7.671302 AGTAGTAAAATGCTCTCTGAACTTGA 58.329 34.615 0.00 0.00 0.00 3.02
240 241 8.150945 AGTAGTAAAATGCTCTCTGAACTTGAA 58.849 33.333 0.00 0.00 0.00 2.69
241 242 7.432350 AGTAAAATGCTCTCTGAACTTGAAG 57.568 36.000 0.00 0.00 0.00 3.02
242 243 4.762956 AAATGCTCTCTGAACTTGAAGC 57.237 40.909 0.00 0.00 0.00 3.86
243 244 1.788258 TGCTCTCTGAACTTGAAGCG 58.212 50.000 0.00 0.00 0.00 4.68
244 245 1.341209 TGCTCTCTGAACTTGAAGCGA 59.659 47.619 0.00 0.00 0.00 4.93
245 246 2.028658 TGCTCTCTGAACTTGAAGCGAT 60.029 45.455 0.00 0.00 0.00 4.58
246 247 2.348059 GCTCTCTGAACTTGAAGCGATG 59.652 50.000 0.00 0.00 0.00 3.84
247 248 3.583806 CTCTCTGAACTTGAAGCGATGT 58.416 45.455 0.00 0.00 0.00 3.06
248 249 3.579709 TCTCTGAACTTGAAGCGATGTC 58.420 45.455 0.00 0.00 0.00 3.06
249 250 3.005791 TCTCTGAACTTGAAGCGATGTCA 59.994 43.478 0.00 0.00 0.00 3.58
250 251 3.727726 TCTGAACTTGAAGCGATGTCAA 58.272 40.909 0.00 0.00 33.97 3.18
277 278 9.654663 GTATTGAATATAGAACTACATGACCCC 57.345 37.037 0.00 0.00 0.00 4.95
278 279 6.340962 TGAATATAGAACTACATGACCCCG 57.659 41.667 0.00 0.00 0.00 5.73
279 280 4.803098 ATATAGAACTACATGACCCCGC 57.197 45.455 0.00 0.00 0.00 6.13
280 281 1.855295 TAGAACTACATGACCCCGCA 58.145 50.000 0.00 0.00 0.00 5.69
281 282 0.981183 AGAACTACATGACCCCGCAA 59.019 50.000 0.00 0.00 0.00 4.85
282 283 1.349688 AGAACTACATGACCCCGCAAA 59.650 47.619 0.00 0.00 0.00 3.68
283 284 2.156098 GAACTACATGACCCCGCAAAA 58.844 47.619 0.00 0.00 0.00 2.44
284 285 2.279935 ACTACATGACCCCGCAAAAA 57.720 45.000 0.00 0.00 0.00 1.94
315 316 6.377327 AGAACTACTGTGACAAAAACATGG 57.623 37.500 0.00 0.00 0.00 3.66
316 317 5.885912 AGAACTACTGTGACAAAAACATGGT 59.114 36.000 0.00 0.00 0.00 3.55
317 318 5.499139 ACTACTGTGACAAAAACATGGTG 57.501 39.130 0.00 0.00 0.00 4.17
318 319 4.947388 ACTACTGTGACAAAAACATGGTGT 59.053 37.500 0.00 0.00 0.00 4.16
319 320 4.370364 ACTGTGACAAAAACATGGTGTC 57.630 40.909 11.84 11.84 41.66 3.67
320 321 4.016444 ACTGTGACAAAAACATGGTGTCT 58.984 39.130 16.83 1.10 41.80 3.41
321 322 4.462483 ACTGTGACAAAAACATGGTGTCTT 59.538 37.500 16.83 0.00 41.80 3.01
322 323 5.650266 ACTGTGACAAAAACATGGTGTCTTA 59.350 36.000 16.83 8.78 41.80 2.10
323 324 6.321181 ACTGTGACAAAAACATGGTGTCTTAT 59.679 34.615 16.83 3.86 41.80 1.73
324 325 7.106439 TGTGACAAAAACATGGTGTCTTATT 57.894 32.000 16.83 0.00 41.80 1.40
325 326 7.551585 TGTGACAAAAACATGGTGTCTTATTT 58.448 30.769 16.83 0.00 41.80 1.40
326 327 7.490725 TGTGACAAAAACATGGTGTCTTATTTG 59.509 33.333 16.83 10.69 41.80 2.32
327 328 7.704472 GTGACAAAAACATGGTGTCTTATTTGA 59.296 33.333 9.69 0.00 41.80 2.69
328 329 7.704472 TGACAAAAACATGGTGTCTTATTTGAC 59.296 33.333 9.69 5.02 41.80 3.18
329 330 7.781056 ACAAAAACATGGTGTCTTATTTGACT 58.219 30.769 9.69 0.00 37.79 3.41
330 331 8.257306 ACAAAAACATGGTGTCTTATTTGACTT 58.743 29.630 9.69 0.00 37.79 3.01
331 332 8.755018 CAAAAACATGGTGTCTTATTTGACTTC 58.245 33.333 0.00 0.00 37.79 3.01
332 333 7.823745 AAACATGGTGTCTTATTTGACTTCT 57.176 32.000 0.00 0.00 37.79 2.85
333 334 6.808008 ACATGGTGTCTTATTTGACTTCTG 57.192 37.500 0.00 0.00 37.79 3.02
334 335 6.299141 ACATGGTGTCTTATTTGACTTCTGT 58.701 36.000 0.00 0.00 37.79 3.41
335 336 6.428159 ACATGGTGTCTTATTTGACTTCTGTC 59.572 38.462 0.00 0.00 43.20 3.51
336 337 6.174720 TGGTGTCTTATTTGACTTCTGTCT 57.825 37.500 0.00 0.00 43.29 3.41
337 338 6.591935 TGGTGTCTTATTTGACTTCTGTCTT 58.408 36.000 0.00 0.00 43.29 3.01
338 339 7.732025 TGGTGTCTTATTTGACTTCTGTCTTA 58.268 34.615 0.00 0.00 43.29 2.10
339 340 8.208224 TGGTGTCTTATTTGACTTCTGTCTTAA 58.792 33.333 0.00 0.00 43.29 1.85
340 341 8.713271 GGTGTCTTATTTGACTTCTGTCTTAAG 58.287 37.037 0.00 0.00 43.29 1.85
341 342 9.262358 GTGTCTTATTTGACTTCTGTCTTAAGT 57.738 33.333 1.63 0.00 43.29 2.24
386 387 9.018582 AGATAGATTTGAGATACATGTCGATCA 57.981 33.333 0.00 1.85 32.55 2.92
387 388 8.978564 ATAGATTTGAGATACATGTCGATCAC 57.021 34.615 0.00 0.00 0.00 3.06
388 389 6.809869 AGATTTGAGATACATGTCGATCACA 58.190 36.000 0.00 2.96 40.18 3.58
389 390 6.699204 AGATTTGAGATACATGTCGATCACAC 59.301 38.462 0.00 0.00 38.04 3.82
390 391 5.582689 TTGAGATACATGTCGATCACACT 57.417 39.130 0.00 0.00 38.04 3.55
391 392 5.582689 TGAGATACATGTCGATCACACTT 57.417 39.130 0.00 0.00 38.04 3.16
392 393 5.965922 TGAGATACATGTCGATCACACTTT 58.034 37.500 0.00 0.00 38.04 2.66
393 394 6.036470 TGAGATACATGTCGATCACACTTTC 58.964 40.000 0.00 0.00 38.04 2.62
394 395 6.127619 TGAGATACATGTCGATCACACTTTCT 60.128 38.462 0.00 0.00 38.04 2.52
395 396 7.067008 TGAGATACATGTCGATCACACTTTCTA 59.933 37.037 0.00 0.00 38.04 2.10
396 397 7.946207 AGATACATGTCGATCACACTTTCTAT 58.054 34.615 0.00 0.00 38.04 1.98
397 398 9.067986 AGATACATGTCGATCACACTTTCTATA 57.932 33.333 0.00 0.00 38.04 1.31
398 399 9.678941 GATACATGTCGATCACACTTTCTATAA 57.321 33.333 0.00 0.00 38.04 0.98
399 400 7.757097 ACATGTCGATCACACTTTCTATAAC 57.243 36.000 0.00 0.00 38.04 1.89
400 401 7.548097 ACATGTCGATCACACTTTCTATAACT 58.452 34.615 0.00 0.00 38.04 2.24
401 402 8.035394 ACATGTCGATCACACTTTCTATAACTT 58.965 33.333 0.00 0.00 38.04 2.66
402 403 8.873830 CATGTCGATCACACTTTCTATAACTTT 58.126 33.333 0.00 0.00 38.04 2.66
403 404 8.462143 TGTCGATCACACTTTCTATAACTTTC 57.538 34.615 0.00 0.00 0.00 2.62
404 405 8.085909 TGTCGATCACACTTTCTATAACTTTCA 58.914 33.333 0.00 0.00 0.00 2.69
405 406 9.088512 GTCGATCACACTTTCTATAACTTTCAT 57.911 33.333 0.00 0.00 0.00 2.57
454 455 5.596836 TGATTTATGAATCAACCAAGGCC 57.403 39.130 10.27 0.00 46.46 5.19
455 456 5.271598 TGATTTATGAATCAACCAAGGCCT 58.728 37.500 10.27 0.00 46.46 5.19
456 457 5.721000 TGATTTATGAATCAACCAAGGCCTT 59.279 36.000 13.78 13.78 46.46 4.35
457 458 6.894654 TGATTTATGAATCAACCAAGGCCTTA 59.105 34.615 20.00 1.64 46.46 2.69
458 459 6.773976 TTTATGAATCAACCAAGGCCTTAG 57.226 37.500 20.00 14.52 0.00 2.18
459 460 4.591321 ATGAATCAACCAAGGCCTTAGA 57.409 40.909 20.00 14.10 0.00 2.10
460 461 4.591321 TGAATCAACCAAGGCCTTAGAT 57.409 40.909 20.00 15.72 0.00 1.98
461 462 4.934356 TGAATCAACCAAGGCCTTAGATT 58.066 39.130 20.00 22.37 0.00 2.40
462 463 4.706476 TGAATCAACCAAGGCCTTAGATTG 59.294 41.667 26.27 23.96 0.00 2.67
463 464 3.806949 TCAACCAAGGCCTTAGATTGT 57.193 42.857 20.00 7.78 0.00 2.71
464 465 4.112634 TCAACCAAGGCCTTAGATTGTT 57.887 40.909 20.00 13.29 0.00 2.83
465 466 4.479158 TCAACCAAGGCCTTAGATTGTTT 58.521 39.130 20.00 0.00 0.00 2.83
466 467 4.280677 TCAACCAAGGCCTTAGATTGTTTG 59.719 41.667 20.00 11.46 30.31 2.93
467 468 4.112634 ACCAAGGCCTTAGATTGTTTGA 57.887 40.909 20.00 0.00 0.00 2.69
468 469 4.479158 ACCAAGGCCTTAGATTGTTTGAA 58.521 39.130 20.00 0.00 0.00 2.69
469 470 4.898861 ACCAAGGCCTTAGATTGTTTGAAA 59.101 37.500 20.00 0.00 0.00 2.69
470 471 5.365314 ACCAAGGCCTTAGATTGTTTGAAAA 59.635 36.000 20.00 0.00 0.00 2.29
471 472 6.126911 ACCAAGGCCTTAGATTGTTTGAAAAA 60.127 34.615 20.00 0.00 0.00 1.94
472 473 6.936335 CCAAGGCCTTAGATTGTTTGAAAAAT 59.064 34.615 20.00 0.00 0.00 1.82
473 474 7.095102 CCAAGGCCTTAGATTGTTTGAAAAATG 60.095 37.037 20.00 0.00 0.00 2.32
474 475 7.301868 AGGCCTTAGATTGTTTGAAAAATGA 57.698 32.000 0.00 0.00 0.00 2.57
475 476 7.381323 AGGCCTTAGATTGTTTGAAAAATGAG 58.619 34.615 0.00 0.00 0.00 2.90
476 477 6.091305 GGCCTTAGATTGTTTGAAAAATGAGC 59.909 38.462 0.00 0.00 0.00 4.26
477 478 6.646240 GCCTTAGATTGTTTGAAAAATGAGCA 59.354 34.615 0.00 0.00 0.00 4.26
478 479 7.171337 GCCTTAGATTGTTTGAAAAATGAGCAA 59.829 33.333 0.00 0.00 0.00 3.91
479 480 8.490355 CCTTAGATTGTTTGAAAAATGAGCAAC 58.510 33.333 0.00 0.00 0.00 4.17
480 481 8.939201 TTAGATTGTTTGAAAAATGAGCAACA 57.061 26.923 0.00 0.00 0.00 3.33
481 482 9.545105 TTAGATTGTTTGAAAAATGAGCAACAT 57.455 25.926 0.00 0.00 41.45 2.71
483 484 8.339714 AGATTGTTTGAAAAATGAGCAACATTG 58.660 29.630 9.30 0.00 46.90 2.82
499 500 4.240103 TGCTGCTGCACCGTCACT 62.240 61.111 14.93 0.00 45.31 3.41
500 501 2.974698 GCTGCTGCACCGTCACTT 60.975 61.111 11.11 0.00 39.41 3.16
501 502 1.667830 GCTGCTGCACCGTCACTTA 60.668 57.895 11.11 0.00 39.41 2.24
502 503 1.021390 GCTGCTGCACCGTCACTTAT 61.021 55.000 11.11 0.00 39.41 1.73
503 504 1.002366 CTGCTGCACCGTCACTTATC 58.998 55.000 0.00 0.00 0.00 1.75
504 505 0.608130 TGCTGCACCGTCACTTATCT 59.392 50.000 0.00 0.00 0.00 1.98
505 506 1.002366 GCTGCACCGTCACTTATCTG 58.998 55.000 0.00 0.00 0.00 2.90
506 507 1.404181 GCTGCACCGTCACTTATCTGA 60.404 52.381 0.00 0.00 0.00 3.27
507 508 2.263077 CTGCACCGTCACTTATCTGAC 58.737 52.381 0.00 0.00 37.75 3.51
508 509 1.067142 TGCACCGTCACTTATCTGACC 60.067 52.381 0.00 0.00 37.83 4.02
509 510 1.909376 CACCGTCACTTATCTGACCG 58.091 55.000 0.00 0.00 37.83 4.79
510 511 0.815734 ACCGTCACTTATCTGACCGG 59.184 55.000 0.00 0.00 37.83 5.28
511 512 0.527817 CCGTCACTTATCTGACCGGC 60.528 60.000 0.00 0.00 37.83 6.13
512 513 0.527817 CGTCACTTATCTGACCGGCC 60.528 60.000 0.00 0.00 37.83 6.13
513 514 0.535335 GTCACTTATCTGACCGGCCA 59.465 55.000 0.00 0.00 35.44 5.36
514 515 0.535335 TCACTTATCTGACCGGCCAC 59.465 55.000 0.00 0.00 0.00 5.01
515 516 0.806102 CACTTATCTGACCGGCCACG 60.806 60.000 0.00 0.00 40.55 4.94
516 517 1.883084 CTTATCTGACCGGCCACGC 60.883 63.158 0.00 0.00 39.22 5.34
517 518 3.709880 TTATCTGACCGGCCACGCG 62.710 63.158 3.53 3.53 39.22 6.01
544 545 4.906792 GCTGCAGGCCGGCTCTAG 62.907 72.222 28.31 18.26 42.75 2.43
545 546 4.906792 CTGCAGGCCGGCTCTAGC 62.907 72.222 28.31 23.61 41.14 3.42
558 559 3.868888 GCTCTAGCCGATTGATCAAAC 57.131 47.619 13.09 9.07 34.31 2.93
559 560 3.198068 GCTCTAGCCGATTGATCAAACA 58.802 45.455 13.09 0.00 34.31 2.83
560 561 3.623060 GCTCTAGCCGATTGATCAAACAA 59.377 43.478 13.09 0.00 34.31 2.83
561 562 4.274459 GCTCTAGCCGATTGATCAAACAAT 59.726 41.667 13.09 0.00 37.85 2.71
562 563 5.220931 GCTCTAGCCGATTGATCAAACAATT 60.221 40.000 13.09 0.00 36.54 2.32
563 564 6.017934 GCTCTAGCCGATTGATCAAACAATTA 60.018 38.462 13.09 2.67 36.54 1.40
564 565 7.482654 TCTAGCCGATTGATCAAACAATTAG 57.517 36.000 13.09 11.62 40.03 1.73
565 566 4.925068 AGCCGATTGATCAAACAATTAGC 58.075 39.130 13.09 8.72 40.03 3.09
566 567 4.641989 AGCCGATTGATCAAACAATTAGCT 59.358 37.500 13.09 10.73 40.53 3.32
567 568 5.822519 AGCCGATTGATCAAACAATTAGCTA 59.177 36.000 13.09 0.00 41.93 3.32
568 569 5.909610 GCCGATTGATCAAACAATTAGCTAC 59.090 40.000 13.09 0.00 40.03 3.58
569 570 6.458206 GCCGATTGATCAAACAATTAGCTACA 60.458 38.462 13.09 0.00 40.03 2.74
570 571 7.642669 CCGATTGATCAAACAATTAGCTACAT 58.357 34.615 13.09 0.00 40.03 2.29
571 572 7.800380 CCGATTGATCAAACAATTAGCTACATC 59.200 37.037 13.09 0.00 40.03 3.06
572 573 8.554528 CGATTGATCAAACAATTAGCTACATCT 58.445 33.333 13.09 0.00 40.03 2.90
573 574 9.875675 GATTGATCAAACAATTAGCTACATCTC 57.124 33.333 13.09 0.00 40.03 2.75
574 575 7.792374 TGATCAAACAATTAGCTACATCTCC 57.208 36.000 0.00 0.00 0.00 3.71
575 576 7.568349 TGATCAAACAATTAGCTACATCTCCT 58.432 34.615 0.00 0.00 0.00 3.69
576 577 7.712639 TGATCAAACAATTAGCTACATCTCCTC 59.287 37.037 0.00 0.00 0.00 3.71
577 578 6.349300 TCAAACAATTAGCTACATCTCCTCC 58.651 40.000 0.00 0.00 0.00 4.30
578 579 4.965200 ACAATTAGCTACATCTCCTCCC 57.035 45.455 0.00 0.00 0.00 4.30
579 580 4.561752 ACAATTAGCTACATCTCCTCCCT 58.438 43.478 0.00 0.00 0.00 4.20
580 581 4.346418 ACAATTAGCTACATCTCCTCCCTG 59.654 45.833 0.00 0.00 0.00 4.45
581 582 2.002505 TAGCTACATCTCCTCCCTGC 57.997 55.000 0.00 0.00 0.00 4.85
582 583 0.031716 AGCTACATCTCCTCCCTGCA 60.032 55.000 0.00 0.00 0.00 4.41
583 584 0.392336 GCTACATCTCCTCCCTGCAG 59.608 60.000 6.78 6.78 0.00 4.41
584 585 1.047002 CTACATCTCCTCCCTGCAGG 58.953 60.000 26.87 26.87 34.40 4.85
585 586 1.050988 TACATCTCCTCCCTGCAGGC 61.051 60.000 28.39 0.00 32.91 4.85
586 587 2.771762 ATCTCCTCCCTGCAGGCC 60.772 66.667 28.39 0.00 32.91 5.19
591 592 3.801997 CTCCCTGCAGGCCGGAAT 61.802 66.667 28.39 0.00 34.51 3.01
592 593 3.338250 TCCCTGCAGGCCGGAATT 61.338 61.111 28.39 0.00 34.51 2.17
593 594 1.983119 CTCCCTGCAGGCCGGAATTA 61.983 60.000 28.39 3.45 34.51 1.40
659 661 2.200373 AAATGGAACCCTGAACTCCG 57.800 50.000 0.00 0.00 31.37 4.63
912 1106 2.582498 GCGATGTCGGGGTTCTCG 60.582 66.667 4.44 0.00 40.23 4.04
971 1223 0.907230 AGGAGGGAGGCTGAGACAAC 60.907 60.000 0.00 0.00 0.00 3.32
1523 1839 2.506231 TGTGGTCAGGTTGGTCTTTGTA 59.494 45.455 0.00 0.00 0.00 2.41
1524 1840 3.137544 TGTGGTCAGGTTGGTCTTTGTAT 59.862 43.478 0.00 0.00 0.00 2.29
1525 1841 3.502211 GTGGTCAGGTTGGTCTTTGTATG 59.498 47.826 0.00 0.00 0.00 2.39
1526 1842 3.081804 GGTCAGGTTGGTCTTTGTATGG 58.918 50.000 0.00 0.00 0.00 2.74
1527 1843 3.244770 GGTCAGGTTGGTCTTTGTATGGA 60.245 47.826 0.00 0.00 0.00 3.41
1528 1844 4.003648 GTCAGGTTGGTCTTTGTATGGAG 58.996 47.826 0.00 0.00 0.00 3.86
1715 2087 7.362401 CCTTGTTGGTTGATTTCCTATCTTGAG 60.362 40.741 0.00 0.00 0.00 3.02
2017 2443 6.017605 CAGTGCATACTAACAGGAAATGATCC 60.018 42.308 0.00 0.00 41.33 3.36
2122 2561 3.920231 ATAGCTTGGCAGTGAAGATGA 57.080 42.857 0.00 0.00 0.00 2.92
2160 2599 3.460103 CTTTTGTTGCCAGCAGATGTTT 58.540 40.909 0.00 0.00 0.00 2.83
2209 2649 4.542697 TGGGAGGTTTAAACTTTGAAGCT 58.457 39.130 17.50 9.75 34.17 3.74
2283 4396 1.160137 GCACTTCCAGCTTGTGTAGG 58.840 55.000 7.46 0.00 34.52 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.125978 ACACAATCCTTCACATTCAAATATGT 57.874 30.769 0.00 0.00 39.27 2.29
11 12 8.865978 CAACACAATCCTTCACATTCAAATATG 58.134 33.333 0.00 0.00 0.00 1.78
12 13 8.587608 ACAACACAATCCTTCACATTCAAATAT 58.412 29.630 0.00 0.00 0.00 1.28
13 14 7.950512 ACAACACAATCCTTCACATTCAAATA 58.049 30.769 0.00 0.00 0.00 1.40
14 15 6.819284 ACAACACAATCCTTCACATTCAAAT 58.181 32.000 0.00 0.00 0.00 2.32
15 16 6.219417 ACAACACAATCCTTCACATTCAAA 57.781 33.333 0.00 0.00 0.00 2.69
16 17 5.850557 ACAACACAATCCTTCACATTCAA 57.149 34.783 0.00 0.00 0.00 2.69
17 18 5.240623 GGTACAACACAATCCTTCACATTCA 59.759 40.000 0.00 0.00 0.00 2.57
18 19 5.473504 AGGTACAACACAATCCTTCACATTC 59.526 40.000 0.00 0.00 0.00 2.67
19 20 5.385198 AGGTACAACACAATCCTTCACATT 58.615 37.500 0.00 0.00 0.00 2.71
20 21 4.985538 AGGTACAACACAATCCTTCACAT 58.014 39.130 0.00 0.00 0.00 3.21
21 22 4.431416 AGGTACAACACAATCCTTCACA 57.569 40.909 0.00 0.00 0.00 3.58
22 23 4.935808 CCTAGGTACAACACAATCCTTCAC 59.064 45.833 0.00 0.00 0.00 3.18
23 24 4.841813 TCCTAGGTACAACACAATCCTTCA 59.158 41.667 9.08 0.00 0.00 3.02
24 25 5.187186 TCTCCTAGGTACAACACAATCCTTC 59.813 44.000 9.08 0.00 0.00 3.46
25 26 5.091552 TCTCCTAGGTACAACACAATCCTT 58.908 41.667 9.08 0.00 0.00 3.36
26 27 4.684724 TCTCCTAGGTACAACACAATCCT 58.315 43.478 9.08 0.00 0.00 3.24
27 28 5.046520 AGTTCTCCTAGGTACAACACAATCC 60.047 44.000 9.08 0.00 0.00 3.01
28 29 6.038997 AGTTCTCCTAGGTACAACACAATC 57.961 41.667 9.08 0.00 0.00 2.67
29 30 5.780793 AGAGTTCTCCTAGGTACAACACAAT 59.219 40.000 9.08 0.00 0.00 2.71
30 31 5.145564 AGAGTTCTCCTAGGTACAACACAA 58.854 41.667 9.08 0.00 0.00 3.33
31 32 4.737578 AGAGTTCTCCTAGGTACAACACA 58.262 43.478 9.08 0.00 0.00 3.72
32 33 5.313520 GAGAGTTCTCCTAGGTACAACAC 57.686 47.826 9.08 8.73 37.02 3.32
45 46 1.470890 CACTCGAGTGGGAGAGTTCTC 59.529 57.143 33.36 0.39 44.46 2.87
46 47 1.074084 TCACTCGAGTGGGAGAGTTCT 59.926 52.381 37.82 1.68 44.46 3.01
47 48 1.535833 TCACTCGAGTGGGAGAGTTC 58.464 55.000 37.82 0.00 44.46 3.01
48 49 1.889829 CTTCACTCGAGTGGGAGAGTT 59.110 52.381 37.82 3.02 44.46 3.01
50 51 1.827681 TCTTCACTCGAGTGGGAGAG 58.172 55.000 37.82 28.74 45.65 3.20
51 52 2.287977 TTCTTCACTCGAGTGGGAGA 57.712 50.000 37.82 33.99 45.65 3.71
52 53 2.493675 TGATTCTTCACTCGAGTGGGAG 59.506 50.000 37.82 32.70 45.65 4.30
53 54 2.493675 CTGATTCTTCACTCGAGTGGGA 59.506 50.000 37.82 31.37 45.65 4.37
54 55 2.493675 TCTGATTCTTCACTCGAGTGGG 59.506 50.000 37.82 29.99 45.65 4.61
55 56 3.857549 TCTGATTCTTCACTCGAGTGG 57.142 47.619 37.82 25.83 45.65 4.00
56 57 4.562000 CACATCTGATTCTTCACTCGAGTG 59.438 45.833 34.76 34.76 46.91 3.51
57 58 4.219507 ACACATCTGATTCTTCACTCGAGT 59.780 41.667 13.58 13.58 0.00 4.18
58 59 4.742417 ACACATCTGATTCTTCACTCGAG 58.258 43.478 11.84 11.84 0.00 4.04
59 60 4.790765 ACACATCTGATTCTTCACTCGA 57.209 40.909 0.00 0.00 0.00 4.04
60 61 9.899226 TTATATACACATCTGATTCTTCACTCG 57.101 33.333 0.00 0.00 0.00 4.18
62 63 9.703892 GCTTATATACACATCTGATTCTTCACT 57.296 33.333 0.00 0.00 0.00 3.41
63 64 9.481340 TGCTTATATACACATCTGATTCTTCAC 57.519 33.333 0.00 0.00 0.00 3.18
66 67 8.944029 GCATGCTTATATACACATCTGATTCTT 58.056 33.333 11.37 0.00 0.00 2.52
67 68 8.098912 TGCATGCTTATATACACATCTGATTCT 58.901 33.333 20.33 0.00 0.00 2.40
68 69 8.173775 GTGCATGCTTATATACACATCTGATTC 58.826 37.037 20.33 0.00 0.00 2.52
69 70 7.662669 TGTGCATGCTTATATACACATCTGATT 59.337 33.333 20.33 0.00 31.23 2.57
70 71 7.118825 GTGTGCATGCTTATATACACATCTGAT 59.881 37.037 24.03 0.00 36.87 2.90
71 72 6.424812 GTGTGCATGCTTATATACACATCTGA 59.575 38.462 24.03 0.00 36.87 3.27
72 73 6.347969 GGTGTGCATGCTTATATACACATCTG 60.348 42.308 27.67 0.00 36.87 2.90
73 74 5.702670 GGTGTGCATGCTTATATACACATCT 59.297 40.000 27.67 0.00 36.87 2.90
74 75 5.469760 TGGTGTGCATGCTTATATACACATC 59.530 40.000 27.67 18.41 36.87 3.06
75 76 5.375773 TGGTGTGCATGCTTATATACACAT 58.624 37.500 27.67 0.00 36.87 3.21
76 77 4.775236 TGGTGTGCATGCTTATATACACA 58.225 39.130 27.67 16.19 39.95 3.72
77 78 5.749596 TTGGTGTGCATGCTTATATACAC 57.250 39.130 22.00 22.00 38.08 2.90
78 79 6.957920 ATTTGGTGTGCATGCTTATATACA 57.042 33.333 20.33 10.77 0.00 2.29
79 80 9.398170 CTTTATTTGGTGTGCATGCTTATATAC 57.602 33.333 20.33 7.98 0.00 1.47
80 81 8.575589 CCTTTATTTGGTGTGCATGCTTATATA 58.424 33.333 20.33 5.01 0.00 0.86
81 82 7.287466 TCCTTTATTTGGTGTGCATGCTTATAT 59.713 33.333 20.33 5.93 0.00 0.86
82 83 6.605194 TCCTTTATTTGGTGTGCATGCTTATA 59.395 34.615 20.33 0.00 0.00 0.98
83 84 5.421693 TCCTTTATTTGGTGTGCATGCTTAT 59.578 36.000 20.33 4.41 0.00 1.73
84 85 4.769488 TCCTTTATTTGGTGTGCATGCTTA 59.231 37.500 20.33 4.68 0.00 3.09
85 86 3.577848 TCCTTTATTTGGTGTGCATGCTT 59.422 39.130 20.33 0.00 0.00 3.91
86 87 3.056607 GTCCTTTATTTGGTGTGCATGCT 60.057 43.478 20.33 0.00 0.00 3.79
87 88 3.253230 GTCCTTTATTTGGTGTGCATGC 58.747 45.455 11.82 11.82 0.00 4.06
88 89 4.517952 TGTCCTTTATTTGGTGTGCATG 57.482 40.909 0.00 0.00 0.00 4.06
89 90 4.771577 TCATGTCCTTTATTTGGTGTGCAT 59.228 37.500 0.00 0.00 0.00 3.96
90 91 4.148079 TCATGTCCTTTATTTGGTGTGCA 58.852 39.130 0.00 0.00 0.00 4.57
91 92 4.782019 TCATGTCCTTTATTTGGTGTGC 57.218 40.909 0.00 0.00 0.00 4.57
92 93 7.121168 ACAGTATCATGTCCTTTATTTGGTGTG 59.879 37.037 0.00 0.00 0.00 3.82
93 94 7.175104 ACAGTATCATGTCCTTTATTTGGTGT 58.825 34.615 0.00 0.00 0.00 4.16
94 95 7.630242 ACAGTATCATGTCCTTTATTTGGTG 57.370 36.000 0.00 0.00 0.00 4.17
95 96 7.669722 ACAACAGTATCATGTCCTTTATTTGGT 59.330 33.333 0.00 0.00 31.50 3.67
96 97 8.055279 ACAACAGTATCATGTCCTTTATTTGG 57.945 34.615 0.00 0.00 31.50 3.28
97 98 9.912634 AAACAACAGTATCATGTCCTTTATTTG 57.087 29.630 0.00 0.00 31.50 2.32
98 99 9.912634 CAAACAACAGTATCATGTCCTTTATTT 57.087 29.630 0.00 0.00 31.50 1.40
99 100 8.522830 CCAAACAACAGTATCATGTCCTTTATT 58.477 33.333 0.00 0.00 31.50 1.40
100 101 7.888021 TCCAAACAACAGTATCATGTCCTTTAT 59.112 33.333 0.00 0.00 31.50 1.40
101 102 7.227873 TCCAAACAACAGTATCATGTCCTTTA 58.772 34.615 0.00 0.00 31.50 1.85
102 103 6.068010 TCCAAACAACAGTATCATGTCCTTT 58.932 36.000 0.00 0.00 31.50 3.11
103 104 5.630121 TCCAAACAACAGTATCATGTCCTT 58.370 37.500 0.00 0.00 31.50 3.36
104 105 5.241403 TCCAAACAACAGTATCATGTCCT 57.759 39.130 0.00 0.00 31.50 3.85
105 106 5.473504 ACTTCCAAACAACAGTATCATGTCC 59.526 40.000 0.00 0.00 31.50 4.02
106 107 6.560253 ACTTCCAAACAACAGTATCATGTC 57.440 37.500 0.00 0.00 31.50 3.06
107 108 6.959639 AACTTCCAAACAACAGTATCATGT 57.040 33.333 0.00 0.00 33.96 3.21
108 109 7.202526 ACAAACTTCCAAACAACAGTATCATG 58.797 34.615 0.00 0.00 0.00 3.07
109 110 7.346751 ACAAACTTCCAAACAACAGTATCAT 57.653 32.000 0.00 0.00 0.00 2.45
110 111 6.767524 ACAAACTTCCAAACAACAGTATCA 57.232 33.333 0.00 0.00 0.00 2.15
111 112 6.475402 CCAACAAACTTCCAAACAACAGTATC 59.525 38.462 0.00 0.00 0.00 2.24
112 113 6.153680 TCCAACAAACTTCCAAACAACAGTAT 59.846 34.615 0.00 0.00 0.00 2.12
113 114 5.477291 TCCAACAAACTTCCAAACAACAGTA 59.523 36.000 0.00 0.00 0.00 2.74
114 115 4.282195 TCCAACAAACTTCCAAACAACAGT 59.718 37.500 0.00 0.00 0.00 3.55
115 116 4.815269 TCCAACAAACTTCCAAACAACAG 58.185 39.130 0.00 0.00 0.00 3.16
116 117 4.873746 TCCAACAAACTTCCAAACAACA 57.126 36.364 0.00 0.00 0.00 3.33
117 118 5.415221 TGATCCAACAAACTTCCAAACAAC 58.585 37.500 0.00 0.00 0.00 3.32
118 119 5.667539 TGATCCAACAAACTTCCAAACAA 57.332 34.783 0.00 0.00 0.00 2.83
119 120 5.362143 TGATGATCCAACAAACTTCCAAACA 59.638 36.000 0.00 0.00 0.00 2.83
120 121 5.841810 TGATGATCCAACAAACTTCCAAAC 58.158 37.500 0.00 0.00 0.00 2.93
121 122 6.477053 TTGATGATCCAACAAACTTCCAAA 57.523 33.333 0.00 0.00 0.00 3.28
122 123 6.669125 ATTGATGATCCAACAAACTTCCAA 57.331 33.333 0.00 0.00 30.57 3.53
123 124 6.947733 AGTATTGATGATCCAACAAACTTCCA 59.052 34.615 0.00 0.00 30.57 3.53
124 125 7.396540 AGTATTGATGATCCAACAAACTTCC 57.603 36.000 0.00 0.00 30.57 3.46
142 143 9.573133 GGACAAGGTGAATTCAAAATAGTATTG 57.427 33.333 10.35 8.67 0.00 1.90
143 144 9.533831 AGGACAAGGTGAATTCAAAATAGTATT 57.466 29.630 10.35 0.00 0.00 1.89
146 147 8.793592 GTTAGGACAAGGTGAATTCAAAATAGT 58.206 33.333 10.35 5.67 0.00 2.12
147 148 8.792633 TGTTAGGACAAGGTGAATTCAAAATAG 58.207 33.333 10.35 2.38 31.49 1.73
148 149 8.698973 TGTTAGGACAAGGTGAATTCAAAATA 57.301 30.769 10.35 0.00 31.49 1.40
149 150 7.595819 TGTTAGGACAAGGTGAATTCAAAAT 57.404 32.000 10.35 0.00 31.49 1.82
150 151 7.595819 ATGTTAGGACAAGGTGAATTCAAAA 57.404 32.000 10.35 0.00 39.66 2.44
151 152 7.942341 AGTATGTTAGGACAAGGTGAATTCAAA 59.058 33.333 10.35 0.00 39.66 2.69
152 153 7.390440 CAGTATGTTAGGACAAGGTGAATTCAA 59.610 37.037 10.35 0.00 39.66 2.69
153 154 6.878923 CAGTATGTTAGGACAAGGTGAATTCA 59.121 38.462 3.38 3.38 39.66 2.57
154 155 7.308782 CAGTATGTTAGGACAAGGTGAATTC 57.691 40.000 0.00 0.00 39.66 2.17
206 207 9.871238 CAGAGAGCATTTTACTACTAACCTTTA 57.129 33.333 0.00 0.00 0.00 1.85
207 208 8.594550 TCAGAGAGCATTTTACTACTAACCTTT 58.405 33.333 0.00 0.00 0.00 3.11
208 209 8.135382 TCAGAGAGCATTTTACTACTAACCTT 57.865 34.615 0.00 0.00 0.00 3.50
209 210 7.719871 TCAGAGAGCATTTTACTACTAACCT 57.280 36.000 0.00 0.00 0.00 3.50
210 211 8.035984 AGTTCAGAGAGCATTTTACTACTAACC 58.964 37.037 0.00 0.00 0.00 2.85
211 212 8.989653 AGTTCAGAGAGCATTTTACTACTAAC 57.010 34.615 0.00 0.00 0.00 2.34
212 213 9.424319 CAAGTTCAGAGAGCATTTTACTACTAA 57.576 33.333 0.00 0.00 0.00 2.24
213 214 8.803235 TCAAGTTCAGAGAGCATTTTACTACTA 58.197 33.333 0.00 0.00 0.00 1.82
214 215 7.671302 TCAAGTTCAGAGAGCATTTTACTACT 58.329 34.615 0.00 0.00 0.00 2.57
215 216 7.891183 TCAAGTTCAGAGAGCATTTTACTAC 57.109 36.000 0.00 0.00 0.00 2.73
216 217 7.118390 GCTTCAAGTTCAGAGAGCATTTTACTA 59.882 37.037 0.00 0.00 0.00 1.82
217 218 6.072783 GCTTCAAGTTCAGAGAGCATTTTACT 60.073 38.462 0.00 0.00 0.00 2.24
218 219 6.082984 GCTTCAAGTTCAGAGAGCATTTTAC 58.917 40.000 0.00 0.00 0.00 2.01
219 220 5.106948 CGCTTCAAGTTCAGAGAGCATTTTA 60.107 40.000 0.00 0.00 0.00 1.52
220 221 4.320057 CGCTTCAAGTTCAGAGAGCATTTT 60.320 41.667 0.00 0.00 0.00 1.82
221 222 3.188048 CGCTTCAAGTTCAGAGAGCATTT 59.812 43.478 0.00 0.00 0.00 2.32
222 223 2.740981 CGCTTCAAGTTCAGAGAGCATT 59.259 45.455 0.00 0.00 0.00 3.56
223 224 2.028658 TCGCTTCAAGTTCAGAGAGCAT 60.029 45.455 0.00 0.00 0.00 3.79
224 225 1.341209 TCGCTTCAAGTTCAGAGAGCA 59.659 47.619 0.00 0.00 0.00 4.26
225 226 2.071688 TCGCTTCAAGTTCAGAGAGC 57.928 50.000 0.00 0.00 0.00 4.09
226 227 3.583806 ACATCGCTTCAAGTTCAGAGAG 58.416 45.455 0.00 0.00 0.00 3.20
227 228 3.005791 TGACATCGCTTCAAGTTCAGAGA 59.994 43.478 0.00 0.00 0.00 3.10
228 229 3.320626 TGACATCGCTTCAAGTTCAGAG 58.679 45.455 0.00 0.00 0.00 3.35
229 230 3.385193 TGACATCGCTTCAAGTTCAGA 57.615 42.857 0.00 0.00 0.00 3.27
230 231 4.062853 CTTGACATCGCTTCAAGTTCAG 57.937 45.455 10.61 0.00 43.38 3.02
236 237 6.741992 ATTCAATACTTGACATCGCTTCAA 57.258 33.333 0.00 0.00 39.87 2.69
237 238 9.196552 CTATATTCAATACTTGACATCGCTTCA 57.803 33.333 0.00 0.00 39.87 3.02
238 239 9.411801 TCTATATTCAATACTTGACATCGCTTC 57.588 33.333 0.00 0.00 39.87 3.86
239 240 9.764363 TTCTATATTCAATACTTGACATCGCTT 57.236 29.630 0.00 0.00 39.87 4.68
240 241 9.197694 GTTCTATATTCAATACTTGACATCGCT 57.802 33.333 0.00 0.00 39.87 4.93
241 242 9.197694 AGTTCTATATTCAATACTTGACATCGC 57.802 33.333 0.00 0.00 39.87 4.58
251 252 9.654663 GGGGTCATGTAGTTCTATATTCAATAC 57.345 37.037 0.00 0.00 0.00 1.89
252 253 8.528643 CGGGGTCATGTAGTTCTATATTCAATA 58.471 37.037 0.00 0.00 0.00 1.90
253 254 7.386851 CGGGGTCATGTAGTTCTATATTCAAT 58.613 38.462 0.00 0.00 0.00 2.57
254 255 6.740401 GCGGGGTCATGTAGTTCTATATTCAA 60.740 42.308 0.00 0.00 0.00 2.69
255 256 5.279306 GCGGGGTCATGTAGTTCTATATTCA 60.279 44.000 0.00 0.00 0.00 2.57
256 257 5.169295 GCGGGGTCATGTAGTTCTATATTC 58.831 45.833 0.00 0.00 0.00 1.75
257 258 4.591498 TGCGGGGTCATGTAGTTCTATATT 59.409 41.667 0.00 0.00 0.00 1.28
258 259 4.157246 TGCGGGGTCATGTAGTTCTATAT 58.843 43.478 0.00 0.00 0.00 0.86
259 260 3.568443 TGCGGGGTCATGTAGTTCTATA 58.432 45.455 0.00 0.00 0.00 1.31
260 261 2.394632 TGCGGGGTCATGTAGTTCTAT 58.605 47.619 0.00 0.00 0.00 1.98
261 262 1.855295 TGCGGGGTCATGTAGTTCTA 58.145 50.000 0.00 0.00 0.00 2.10
262 263 0.981183 TTGCGGGGTCATGTAGTTCT 59.019 50.000 0.00 0.00 0.00 3.01
263 264 1.816074 TTTGCGGGGTCATGTAGTTC 58.184 50.000 0.00 0.00 0.00 3.01
264 265 2.279935 TTTTGCGGGGTCATGTAGTT 57.720 45.000 0.00 0.00 0.00 2.24
265 266 2.279935 TTTTTGCGGGGTCATGTAGT 57.720 45.000 0.00 0.00 0.00 2.73
289 290 9.214957 CCATGTTTTTGTCACAGTAGTTCTATA 57.785 33.333 0.00 0.00 0.00 1.31
290 291 7.719633 ACCATGTTTTTGTCACAGTAGTTCTAT 59.280 33.333 0.00 0.00 0.00 1.98
291 292 7.011950 CACCATGTTTTTGTCACAGTAGTTCTA 59.988 37.037 0.00 0.00 0.00 2.10
292 293 5.885912 ACCATGTTTTTGTCACAGTAGTTCT 59.114 36.000 0.00 0.00 0.00 3.01
293 294 5.971202 CACCATGTTTTTGTCACAGTAGTTC 59.029 40.000 0.00 0.00 0.00 3.01
294 295 5.417580 ACACCATGTTTTTGTCACAGTAGTT 59.582 36.000 0.00 0.00 0.00 2.24
295 296 4.947388 ACACCATGTTTTTGTCACAGTAGT 59.053 37.500 0.00 0.00 0.00 2.73
296 297 5.296780 AGACACCATGTTTTTGTCACAGTAG 59.703 40.000 13.40 0.00 41.83 2.57
297 298 5.189928 AGACACCATGTTTTTGTCACAGTA 58.810 37.500 13.40 0.00 41.83 2.74
298 299 4.016444 AGACACCATGTTTTTGTCACAGT 58.984 39.130 13.40 0.00 41.83 3.55
299 300 4.637483 AGACACCATGTTTTTGTCACAG 57.363 40.909 13.40 0.00 41.83 3.66
300 301 6.707440 ATAAGACACCATGTTTTTGTCACA 57.293 33.333 13.40 4.48 41.83 3.58
301 302 7.704472 TCAAATAAGACACCATGTTTTTGTCAC 59.296 33.333 13.40 0.00 41.83 3.67
302 303 7.704472 GTCAAATAAGACACCATGTTTTTGTCA 59.296 33.333 13.40 0.00 41.83 3.58
303 304 7.920682 AGTCAAATAAGACACCATGTTTTTGTC 59.079 33.333 6.08 6.08 40.98 3.18
304 305 7.781056 AGTCAAATAAGACACCATGTTTTTGT 58.219 30.769 0.00 0.00 40.98 2.83
305 306 8.647143 AAGTCAAATAAGACACCATGTTTTTG 57.353 30.769 0.00 0.00 40.98 2.44
306 307 8.695456 AGAAGTCAAATAAGACACCATGTTTTT 58.305 29.630 0.00 0.00 40.98 1.94
307 308 8.137437 CAGAAGTCAAATAAGACACCATGTTTT 58.863 33.333 0.00 0.00 40.98 2.43
308 309 7.285401 ACAGAAGTCAAATAAGACACCATGTTT 59.715 33.333 0.00 0.00 40.98 2.83
309 310 6.772716 ACAGAAGTCAAATAAGACACCATGTT 59.227 34.615 0.00 0.00 40.98 2.71
310 311 6.299141 ACAGAAGTCAAATAAGACACCATGT 58.701 36.000 0.00 0.00 40.98 3.21
311 312 6.808008 ACAGAAGTCAAATAAGACACCATG 57.192 37.500 0.00 0.00 40.98 3.66
360 361 9.018582 TGATCGACATGTATCTCAAATCTATCT 57.981 33.333 0.00 0.00 0.00 1.98
361 362 9.071221 GTGATCGACATGTATCTCAAATCTATC 57.929 37.037 0.00 0.00 0.00 2.08
362 363 8.579863 TGTGATCGACATGTATCTCAAATCTAT 58.420 33.333 0.00 0.00 0.00 1.98
363 364 7.862873 GTGTGATCGACATGTATCTCAAATCTA 59.137 37.037 12.61 0.00 36.78 1.98
364 365 6.699204 GTGTGATCGACATGTATCTCAAATCT 59.301 38.462 12.61 0.00 36.78 2.40
365 366 6.699204 AGTGTGATCGACATGTATCTCAAATC 59.301 38.462 12.61 4.33 36.78 2.17
366 367 6.577103 AGTGTGATCGACATGTATCTCAAAT 58.423 36.000 12.61 5.09 36.78 2.32
367 368 5.965922 AGTGTGATCGACATGTATCTCAAA 58.034 37.500 12.61 3.29 36.78 2.69
368 369 5.582689 AGTGTGATCGACATGTATCTCAA 57.417 39.130 12.61 0.00 36.78 3.02
369 370 5.582689 AAGTGTGATCGACATGTATCTCA 57.417 39.130 0.00 3.79 36.78 3.27
370 371 6.269315 AGAAAGTGTGATCGACATGTATCTC 58.731 40.000 0.00 0.94 36.78 2.75
371 372 6.214191 AGAAAGTGTGATCGACATGTATCT 57.786 37.500 0.00 0.00 36.78 1.98
372 373 9.678941 TTATAGAAAGTGTGATCGACATGTATC 57.321 33.333 0.00 0.00 36.78 2.24
373 374 9.464714 GTTATAGAAAGTGTGATCGACATGTAT 57.535 33.333 0.00 0.00 36.78 2.29
374 375 8.683615 AGTTATAGAAAGTGTGATCGACATGTA 58.316 33.333 0.00 0.00 36.78 2.29
375 376 7.548097 AGTTATAGAAAGTGTGATCGACATGT 58.452 34.615 0.00 0.00 36.78 3.21
376 377 7.993821 AGTTATAGAAAGTGTGATCGACATG 57.006 36.000 0.00 0.00 36.78 3.21
377 378 9.088512 GAAAGTTATAGAAAGTGTGATCGACAT 57.911 33.333 0.00 0.00 36.78 3.06
378 379 8.085909 TGAAAGTTATAGAAAGTGTGATCGACA 58.914 33.333 0.00 0.00 0.00 4.35
379 380 8.462143 TGAAAGTTATAGAAAGTGTGATCGAC 57.538 34.615 0.00 0.00 0.00 4.20
433 434 5.859205 AGGCCTTGGTTGATTCATAAATC 57.141 39.130 0.00 0.00 41.48 2.17
434 435 7.125391 TCTAAGGCCTTGGTTGATTCATAAAT 58.875 34.615 28.77 0.00 0.00 1.40
435 436 6.489603 TCTAAGGCCTTGGTTGATTCATAAA 58.510 36.000 28.77 1.06 0.00 1.40
436 437 6.073447 TCTAAGGCCTTGGTTGATTCATAA 57.927 37.500 28.77 1.62 0.00 1.90
437 438 5.708736 TCTAAGGCCTTGGTTGATTCATA 57.291 39.130 28.77 2.42 0.00 2.15
438 439 4.591321 TCTAAGGCCTTGGTTGATTCAT 57.409 40.909 28.77 0.00 0.00 2.57
439 440 4.591321 ATCTAAGGCCTTGGTTGATTCA 57.409 40.909 28.77 7.46 0.00 2.57
440 441 4.706962 ACAATCTAAGGCCTTGGTTGATTC 59.293 41.667 31.40 0.00 0.00 2.52
441 442 4.677182 ACAATCTAAGGCCTTGGTTGATT 58.323 39.130 31.40 26.54 0.00 2.57
442 443 4.322057 ACAATCTAAGGCCTTGGTTGAT 57.678 40.909 31.40 23.86 0.00 2.57
443 444 3.806949 ACAATCTAAGGCCTTGGTTGA 57.193 42.857 31.40 23.07 0.00 3.18
444 445 4.280677 TCAAACAATCTAAGGCCTTGGTTG 59.719 41.667 28.77 27.65 44.87 3.77
445 446 4.479158 TCAAACAATCTAAGGCCTTGGTT 58.521 39.130 28.77 17.38 30.16 3.67
446 447 4.112634 TCAAACAATCTAAGGCCTTGGT 57.887 40.909 28.77 14.42 0.00 3.67
447 448 5.467035 TTTCAAACAATCTAAGGCCTTGG 57.533 39.130 28.77 25.46 0.00 3.61
448 449 7.656948 TCATTTTTCAAACAATCTAAGGCCTTG 59.343 33.333 28.77 17.30 0.00 3.61
449 450 7.734942 TCATTTTTCAAACAATCTAAGGCCTT 58.265 30.769 24.18 24.18 0.00 4.35
450 451 7.301868 TCATTTTTCAAACAATCTAAGGCCT 57.698 32.000 0.00 0.00 0.00 5.19
451 452 6.091305 GCTCATTTTTCAAACAATCTAAGGCC 59.909 38.462 0.00 0.00 0.00 5.19
452 453 6.646240 TGCTCATTTTTCAAACAATCTAAGGC 59.354 34.615 0.00 0.00 0.00 4.35
453 454 8.490355 GTTGCTCATTTTTCAAACAATCTAAGG 58.510 33.333 0.00 0.00 0.00 2.69
454 455 9.033481 TGTTGCTCATTTTTCAAACAATCTAAG 57.967 29.630 0.00 0.00 0.00 2.18
455 456 8.939201 TGTTGCTCATTTTTCAAACAATCTAA 57.061 26.923 0.00 0.00 0.00 2.10
456 457 9.545105 AATGTTGCTCATTTTTCAAACAATCTA 57.455 25.926 2.73 0.00 43.33 1.98
457 458 8.339714 CAATGTTGCTCATTTTTCAAACAATCT 58.660 29.630 5.27 0.00 43.33 2.40
458 459 8.483743 CAATGTTGCTCATTTTTCAAACAATC 57.516 30.769 5.27 0.00 43.33 2.67
483 484 1.021390 ATAAGTGACGGTGCAGCAGC 61.021 55.000 17.33 14.97 42.57 5.25
484 485 1.002366 GATAAGTGACGGTGCAGCAG 58.998 55.000 17.33 11.15 0.00 4.24
485 486 0.608130 AGATAAGTGACGGTGCAGCA 59.392 50.000 17.33 0.00 0.00 4.41
486 487 1.002366 CAGATAAGTGACGGTGCAGC 58.998 55.000 5.64 5.64 0.00 5.25
487 488 2.263077 GTCAGATAAGTGACGGTGCAG 58.737 52.381 0.00 0.00 37.69 4.41
488 489 1.067142 GGTCAGATAAGTGACGGTGCA 60.067 52.381 0.00 0.00 46.72 4.57
489 490 1.641577 GGTCAGATAAGTGACGGTGC 58.358 55.000 0.00 0.00 46.72 5.01
490 491 1.469251 CCGGTCAGATAAGTGACGGTG 60.469 57.143 0.00 0.00 46.72 4.94
491 492 0.815734 CCGGTCAGATAAGTGACGGT 59.184 55.000 0.00 0.00 46.72 4.83
492 493 0.527817 GCCGGTCAGATAAGTGACGG 60.528 60.000 1.90 0.00 46.72 4.79
493 494 0.527817 GGCCGGTCAGATAAGTGACG 60.528 60.000 0.00 0.00 46.72 4.35
494 495 0.535335 TGGCCGGTCAGATAAGTGAC 59.465 55.000 3.51 0.00 45.30 3.67
495 496 0.535335 GTGGCCGGTCAGATAAGTGA 59.465 55.000 10.28 0.00 0.00 3.41
496 497 0.806102 CGTGGCCGGTCAGATAAGTG 60.806 60.000 10.28 0.00 0.00 3.16
497 498 1.515954 CGTGGCCGGTCAGATAAGT 59.484 57.895 10.28 0.00 0.00 2.24
498 499 1.883084 GCGTGGCCGGTCAGATAAG 60.883 63.158 10.28 0.00 33.68 1.73
499 500 2.185867 GCGTGGCCGGTCAGATAA 59.814 61.111 10.28 0.00 33.68 1.75
500 501 4.201679 CGCGTGGCCGGTCAGATA 62.202 66.667 10.28 0.00 33.68 1.98
527 528 4.906792 CTAGAGCCGGCCTGCAGC 62.907 72.222 26.15 12.55 42.60 5.25
528 529 4.906792 GCTAGAGCCGGCCTGCAG 62.907 72.222 26.15 16.43 34.31 4.41
537 538 6.714730 ATTGTTTGATCAATCGGCTAGAGCC 61.715 44.000 9.40 10.73 42.71 4.70
538 539 3.198068 TGTTTGATCAATCGGCTAGAGC 58.802 45.455 9.40 0.00 41.14 4.09
539 540 5.998454 ATTGTTTGATCAATCGGCTAGAG 57.002 39.130 9.40 0.00 33.43 2.43
540 541 6.017934 GCTAATTGTTTGATCAATCGGCTAGA 60.018 38.462 9.40 0.00 37.09 2.43
541 542 6.017605 AGCTAATTGTTTGATCAATCGGCTAG 60.018 38.462 9.40 10.45 40.21 3.42
542 543 5.822519 AGCTAATTGTTTGATCAATCGGCTA 59.177 36.000 9.40 0.99 40.21 3.93
543 544 4.641989 AGCTAATTGTTTGATCAATCGGCT 59.358 37.500 9.40 10.72 38.86 5.52
544 545 4.925068 AGCTAATTGTTTGATCAATCGGC 58.075 39.130 9.40 8.91 37.09 5.54
545 546 7.015226 TGTAGCTAATTGTTTGATCAATCGG 57.985 36.000 9.40 0.16 37.09 4.18
546 547 8.554528 AGATGTAGCTAATTGTTTGATCAATCG 58.445 33.333 9.40 0.00 37.09 3.34
547 548 9.875675 GAGATGTAGCTAATTGTTTGATCAATC 57.124 33.333 9.40 9.29 37.09 2.67
548 549 8.844244 GGAGATGTAGCTAATTGTTTGATCAAT 58.156 33.333 9.40 0.00 39.35 2.57
549 550 8.049117 AGGAGATGTAGCTAATTGTTTGATCAA 58.951 33.333 3.38 3.38 0.00 2.57
550 551 7.568349 AGGAGATGTAGCTAATTGTTTGATCA 58.432 34.615 0.00 0.00 0.00 2.92
551 552 7.172361 GGAGGAGATGTAGCTAATTGTTTGATC 59.828 40.741 0.00 0.00 0.00 2.92
552 553 6.995091 GGAGGAGATGTAGCTAATTGTTTGAT 59.005 38.462 0.00 0.00 0.00 2.57
553 554 6.349300 GGAGGAGATGTAGCTAATTGTTTGA 58.651 40.000 0.00 0.00 0.00 2.69
554 555 5.529060 GGGAGGAGATGTAGCTAATTGTTTG 59.471 44.000 0.00 0.00 0.00 2.93
555 556 5.430089 AGGGAGGAGATGTAGCTAATTGTTT 59.570 40.000 0.00 0.00 0.00 2.83
556 557 4.971924 AGGGAGGAGATGTAGCTAATTGTT 59.028 41.667 0.00 0.00 0.00 2.83
557 558 4.346418 CAGGGAGGAGATGTAGCTAATTGT 59.654 45.833 0.00 0.00 0.00 2.71
558 559 4.802248 GCAGGGAGGAGATGTAGCTAATTG 60.802 50.000 0.00 0.00 0.00 2.32
559 560 3.326297 GCAGGGAGGAGATGTAGCTAATT 59.674 47.826 0.00 0.00 0.00 1.40
560 561 2.903135 GCAGGGAGGAGATGTAGCTAAT 59.097 50.000 0.00 0.00 0.00 1.73
561 562 2.320781 GCAGGGAGGAGATGTAGCTAA 58.679 52.381 0.00 0.00 0.00 3.09
562 563 1.217942 TGCAGGGAGGAGATGTAGCTA 59.782 52.381 0.00 0.00 0.00 3.32
563 564 0.031716 TGCAGGGAGGAGATGTAGCT 60.032 55.000 0.00 0.00 0.00 3.32
564 565 0.392336 CTGCAGGGAGGAGATGTAGC 59.608 60.000 5.57 0.00 38.04 3.58
565 566 1.047002 CCTGCAGGGAGGAGATGTAG 58.953 60.000 26.14 0.00 38.04 2.74
566 567 1.050988 GCCTGCAGGGAGGAGATGTA 61.051 60.000 33.46 0.00 38.04 2.29
567 568 2.373707 GCCTGCAGGGAGGAGATGT 61.374 63.158 33.46 0.00 38.04 3.06
568 569 2.509916 GCCTGCAGGGAGGAGATG 59.490 66.667 33.46 5.65 38.04 2.90
569 570 2.771762 GGCCTGCAGGGAGGAGAT 60.772 66.667 33.46 0.00 38.04 2.75
574 575 1.983119 TAATTCCGGCCTGCAGGGAG 61.983 60.000 33.46 9.60 37.23 4.30
575 576 1.352622 ATAATTCCGGCCTGCAGGGA 61.353 55.000 33.46 19.72 37.23 4.20
576 577 0.468029 AATAATTCCGGCCTGCAGGG 60.468 55.000 33.46 17.98 35.18 4.45
577 578 2.270352 TAATAATTCCGGCCTGCAGG 57.730 50.000 29.34 29.34 38.53 4.85
578 579 2.554032 CCTTAATAATTCCGGCCTGCAG 59.446 50.000 6.78 6.78 0.00 4.41
579 580 2.173782 TCCTTAATAATTCCGGCCTGCA 59.826 45.455 0.00 0.00 0.00 4.41
580 581 2.858745 TCCTTAATAATTCCGGCCTGC 58.141 47.619 0.00 0.00 0.00 4.85
581 582 5.845391 TTTTCCTTAATAATTCCGGCCTG 57.155 39.130 0.00 0.00 0.00 4.85
582 583 5.955959 ACTTTTTCCTTAATAATTCCGGCCT 59.044 36.000 0.00 0.00 0.00 5.19
583 584 6.096423 AGACTTTTTCCTTAATAATTCCGGCC 59.904 38.462 0.00 0.00 0.00 6.13
584 585 7.096884 AGACTTTTTCCTTAATAATTCCGGC 57.903 36.000 0.00 0.00 0.00 6.13
613 614 0.179001 CTCCACGGGTTCAGGGTTTT 60.179 55.000 0.00 0.00 0.00 2.43
625 627 3.343617 TCCATTTAGCTTTTCTCCACGG 58.656 45.455 0.00 0.00 0.00 4.94
659 661 3.350833 AGTGTGCTCATTTCAGGGATTC 58.649 45.455 0.00 0.00 0.00 2.52
797 825 1.126488 CAGCAGCTCAGATTCCCCTA 58.874 55.000 0.00 0.00 0.00 3.53
912 1106 2.517166 GGAGCGAAAGATGCCCCC 60.517 66.667 0.00 0.00 0.00 5.40
1049 1301 0.686789 CCATGATATCCACCTCGGCA 59.313 55.000 0.00 0.00 33.14 5.69
1283 1599 8.449397 CAGTCTCCAAACTTCATCTCTTAAATG 58.551 37.037 0.00 0.00 0.00 2.32
1367 1683 0.536006 AACTGTTCCTGCAGAGCCAC 60.536 55.000 17.39 6.44 39.62 5.01
1404 1720 1.028868 GGTCTTCACTGCATCTGCCC 61.029 60.000 0.00 0.00 41.18 5.36
1523 1839 2.922283 ACCAACCATTCTCCTTCTCCAT 59.078 45.455 0.00 0.00 0.00 3.41
1524 1840 2.348472 ACCAACCATTCTCCTTCTCCA 58.652 47.619 0.00 0.00 0.00 3.86
1525 1841 3.441500 AACCAACCATTCTCCTTCTCC 57.558 47.619 0.00 0.00 0.00 3.71
1526 1842 4.938226 CACTAACCAACCATTCTCCTTCTC 59.062 45.833 0.00 0.00 0.00 2.87
1527 1843 4.351111 ACACTAACCAACCATTCTCCTTCT 59.649 41.667 0.00 0.00 0.00 2.85
1528 1844 4.652822 ACACTAACCAACCATTCTCCTTC 58.347 43.478 0.00 0.00 0.00 3.46
2122 2561 1.582389 AAGGAGGAAGAGAGCTGCAT 58.418 50.000 1.02 0.00 0.00 3.96
2160 2599 1.610038 CAACTCCAATGCACAAGCTGA 59.390 47.619 0.00 0.00 42.74 4.26
2209 2649 1.064758 ACTTGTGGAACTGCTGGAACA 60.065 47.619 0.00 0.00 38.04 3.18
2283 4396 1.339055 TGAATGTACTGCAGGCTGGTC 60.339 52.381 19.93 10.08 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.