Multiple sequence alignment - TraesCS4A01G456700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G456700 chr4A 100.000 2562 0 0 1 2562 721922753 721925314 0.000000e+00 4732.0
1 TraesCS4A01G456700 chr4A 95.636 1077 32 3 1491 2562 577897589 577898655 0.000000e+00 1714.0
2 TraesCS4A01G456700 chr4A 92.777 1066 57 9 434 1497 577896289 577897336 0.000000e+00 1524.0
3 TraesCS4A01G456700 chr2A 96.472 1077 30 3 1491 2562 707240877 707239804 0.000000e+00 1772.0
4 TraesCS4A01G456700 chr2A 93.851 1057 52 8 434 1481 707242195 707241143 0.000000e+00 1580.0
5 TraesCS4A01G456700 chr2A 85.377 212 28 2 6 214 90047794 90047583 1.540000e-52 217.0
6 TraesCS4A01G456700 chr2A 97.222 36 1 0 184 219 628522031 628521996 7.650000e-06 62.1
7 TraesCS4A01G456700 chr5B 95.915 1077 38 3 1491 2562 455768943 455770018 0.000000e+00 1740.0
8 TraesCS4A01G456700 chr5B 92.748 1048 68 7 434 1481 455767639 455768678 0.000000e+00 1507.0
9 TraesCS4A01G456700 chr5B 92.641 462 30 4 434 895 680542598 680542141 0.000000e+00 662.0
10 TraesCS4A01G456700 chr1B 95.216 1066 43 5 434 1497 655064642 655063583 0.000000e+00 1679.0
11 TraesCS4A01G456700 chr1B 83.178 214 28 5 6 216 28260906 28261114 3.370000e-44 189.0
12 TraesCS4A01G456700 chr2B 94.625 1079 51 2 1491 2562 764417113 764416035 0.000000e+00 1664.0
13 TraesCS4A01G456700 chr2B 98.926 745 8 0 1818 2562 112473873 112473129 0.000000e+00 1332.0
14 TraesCS4A01G456700 chr2B 97.600 750 16 2 748 1497 112483787 112483040 0.000000e+00 1284.0
15 TraesCS4A01G456700 chr2B 97.510 482 10 2 438 919 112484266 112483787 0.000000e+00 822.0
16 TraesCS4A01G456700 chr2B 93.609 532 30 3 958 1486 764417904 764417374 0.000000e+00 791.0
17 TraesCS4A01G456700 chr2D 94.800 1077 27 5 1491 2562 441865374 441864322 0.000000e+00 1652.0
18 TraesCS4A01G456700 chr2D 94.185 1049 55 6 434 1481 441866683 441865640 0.000000e+00 1594.0
19 TraesCS4A01G456700 chr2D 92.760 221 14 2 4 224 508068380 508068162 4.110000e-83 318.0
20 TraesCS4A01G456700 chr5D 93.222 1077 46 3 1491 2562 384263872 384264926 0.000000e+00 1559.0
21 TraesCS4A01G456700 chr5D 92.366 1048 72 7 434 1480 384262523 384263563 0.000000e+00 1485.0
22 TraesCS4A01G456700 chr5D 91.478 751 54 8 434 1183 448747462 448748203 0.000000e+00 1024.0
23 TraesCS4A01G456700 chr3B 93.180 1041 64 3 1520 2554 485684835 485685874 0.000000e+00 1522.0
24 TraesCS4A01G456700 chr3B 90.583 223 19 2 4 226 729596845 729596625 6.930000e-76 294.0
25 TraesCS4A01G456700 chr7D 94.867 974 42 1 1597 2562 41112980 41112007 0.000000e+00 1515.0
26 TraesCS4A01G456700 chr7D 92.040 892 64 6 595 1485 41119045 41118160 0.000000e+00 1247.0
27 TraesCS4A01G456700 chr7D 97.273 110 3 0 1491 1600 41117913 41117804 1.210000e-43 187.0
28 TraesCS4A01G456700 chrUn 92.056 214 15 2 1 214 112172529 112172740 1.490000e-77 300.0
29 TraesCS4A01G456700 chr1D 96.000 175 7 0 1 175 454504751 454504925 4.170000e-73 285.0
30 TraesCS4A01G456700 chr6B 81.203 133 20 4 88 216 22080465 22080334 4.510000e-18 102.0
31 TraesCS4A01G456700 chr7A 79.070 129 22 4 92 216 727826333 727826460 1.630000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G456700 chr4A 721922753 721925314 2561 False 4732.0 4732 100.0000 1 2562 1 chr4A.!!$F1 2561
1 TraesCS4A01G456700 chr4A 577896289 577898655 2366 False 1619.0 1714 94.2065 434 2562 2 chr4A.!!$F2 2128
2 TraesCS4A01G456700 chr2A 707239804 707242195 2391 True 1676.0 1772 95.1615 434 2562 2 chr2A.!!$R3 2128
3 TraesCS4A01G456700 chr5B 455767639 455770018 2379 False 1623.5 1740 94.3315 434 2562 2 chr5B.!!$F1 2128
4 TraesCS4A01G456700 chr1B 655063583 655064642 1059 True 1679.0 1679 95.2160 434 1497 1 chr1B.!!$R1 1063
5 TraesCS4A01G456700 chr2B 112473129 112473873 744 True 1332.0 1332 98.9260 1818 2562 1 chr2B.!!$R1 744
6 TraesCS4A01G456700 chr2B 764416035 764417904 1869 True 1227.5 1664 94.1170 958 2562 2 chr2B.!!$R3 1604
7 TraesCS4A01G456700 chr2B 112483040 112484266 1226 True 1053.0 1284 97.5550 438 1497 2 chr2B.!!$R2 1059
8 TraesCS4A01G456700 chr2D 441864322 441866683 2361 True 1623.0 1652 94.4925 434 2562 2 chr2D.!!$R2 2128
9 TraesCS4A01G456700 chr5D 384262523 384264926 2403 False 1522.0 1559 92.7940 434 2562 2 chr5D.!!$F2 2128
10 TraesCS4A01G456700 chr5D 448747462 448748203 741 False 1024.0 1024 91.4780 434 1183 1 chr5D.!!$F1 749
11 TraesCS4A01G456700 chr3B 485684835 485685874 1039 False 1522.0 1522 93.1800 1520 2554 1 chr3B.!!$F1 1034
12 TraesCS4A01G456700 chr7D 41112007 41112980 973 True 1515.0 1515 94.8670 1597 2562 1 chr7D.!!$R1 965
13 TraesCS4A01G456700 chr7D 41117804 41119045 1241 True 717.0 1247 94.6565 595 1600 2 chr7D.!!$R2 1005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.031817 ATGGGCTGGATTTTGGGGAG 60.032 55.0 0.0 0.00 0.0 4.30 F
287 288 0.173481 TGATATATCTCAGCGGCGCC 59.827 55.0 30.4 19.07 0.0 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 1390 2.379907 ACCCATCAACCAATTCAGTCCT 59.620 45.455 0.0 0.0 0.0 3.85 R
1675 2199 3.117663 TCCTTCTCCTCTCCTTCTAGCTC 60.118 52.174 0.0 0.0 0.0 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.974368 TTTGAACAACCACATTTCTCGT 57.026 36.364 0.00 0.00 0.00 4.18
22 23 4.545823 TTGAACAACCACATTTCTCGTC 57.454 40.909 0.00 0.00 0.00 4.20
23 24 3.536570 TGAACAACCACATTTCTCGTCA 58.463 40.909 0.00 0.00 0.00 4.35
24 25 3.942115 TGAACAACCACATTTCTCGTCAA 59.058 39.130 0.00 0.00 0.00 3.18
25 26 4.578516 TGAACAACCACATTTCTCGTCAAT 59.421 37.500 0.00 0.00 0.00 2.57
26 27 4.488126 ACAACCACATTTCTCGTCAATG 57.512 40.909 0.00 0.00 37.60 2.82
27 28 3.253188 ACAACCACATTTCTCGTCAATGG 59.747 43.478 8.24 0.00 36.15 3.16
28 29 2.436417 ACCACATTTCTCGTCAATGGG 58.564 47.619 8.24 4.74 36.15 4.00
29 30 1.133025 CCACATTTCTCGTCAATGGGC 59.867 52.381 8.24 0.00 34.20 5.36
30 31 2.086869 CACATTTCTCGTCAATGGGCT 58.913 47.619 8.24 0.00 36.15 5.19
31 32 2.086869 ACATTTCTCGTCAATGGGCTG 58.913 47.619 8.24 0.00 36.15 4.85
32 33 1.402968 CATTTCTCGTCAATGGGCTGG 59.597 52.381 0.00 0.00 0.00 4.85
33 34 0.690192 TTTCTCGTCAATGGGCTGGA 59.310 50.000 0.00 0.00 0.00 3.86
34 35 0.911769 TTCTCGTCAATGGGCTGGAT 59.088 50.000 0.00 0.00 0.00 3.41
35 36 0.911769 TCTCGTCAATGGGCTGGATT 59.088 50.000 0.00 0.00 0.00 3.01
36 37 1.281867 TCTCGTCAATGGGCTGGATTT 59.718 47.619 0.00 0.00 0.00 2.17
37 38 2.094675 CTCGTCAATGGGCTGGATTTT 58.905 47.619 0.00 0.00 0.00 1.82
38 39 1.818060 TCGTCAATGGGCTGGATTTTG 59.182 47.619 0.00 0.00 0.00 2.44
39 40 1.135024 CGTCAATGGGCTGGATTTTGG 60.135 52.381 0.00 0.00 0.00 3.28
40 41 1.207811 GTCAATGGGCTGGATTTTGGG 59.792 52.381 0.00 0.00 0.00 4.12
41 42 0.542805 CAATGGGCTGGATTTTGGGG 59.457 55.000 0.00 0.00 0.00 4.96
42 43 0.417035 AATGGGCTGGATTTTGGGGA 59.583 50.000 0.00 0.00 0.00 4.81
43 44 0.031817 ATGGGCTGGATTTTGGGGAG 60.032 55.000 0.00 0.00 0.00 4.30
44 45 1.145900 TGGGCTGGATTTTGGGGAGA 61.146 55.000 0.00 0.00 0.00 3.71
45 46 0.684479 GGGCTGGATTTTGGGGAGAC 60.684 60.000 0.00 0.00 0.00 3.36
57 58 3.827898 GGAGACCGGACCTGCGAG 61.828 72.222 9.46 0.00 0.00 5.03
58 59 2.750637 GAGACCGGACCTGCGAGA 60.751 66.667 9.46 0.00 0.00 4.04
59 60 3.053849 GAGACCGGACCTGCGAGAC 62.054 68.421 9.46 0.00 0.00 3.36
60 61 3.063084 GACCGGACCTGCGAGACT 61.063 66.667 9.46 0.00 0.00 3.24
61 62 1.748122 GACCGGACCTGCGAGACTA 60.748 63.158 9.46 0.00 0.00 2.59
62 63 1.076923 ACCGGACCTGCGAGACTAT 60.077 57.895 9.46 0.00 0.00 2.12
63 64 0.683504 ACCGGACCTGCGAGACTATT 60.684 55.000 9.46 0.00 0.00 1.73
64 65 0.249073 CCGGACCTGCGAGACTATTG 60.249 60.000 0.00 0.00 0.00 1.90
65 66 0.738975 CGGACCTGCGAGACTATTGA 59.261 55.000 0.00 0.00 0.00 2.57
66 67 1.134367 CGGACCTGCGAGACTATTGAA 59.866 52.381 0.00 0.00 0.00 2.69
67 68 2.223829 CGGACCTGCGAGACTATTGAAT 60.224 50.000 0.00 0.00 0.00 2.57
68 69 3.738281 CGGACCTGCGAGACTATTGAATT 60.738 47.826 0.00 0.00 0.00 2.17
69 70 4.192317 GGACCTGCGAGACTATTGAATTT 58.808 43.478 0.00 0.00 0.00 1.82
70 71 4.636206 GGACCTGCGAGACTATTGAATTTT 59.364 41.667 0.00 0.00 0.00 1.82
71 72 5.815740 GGACCTGCGAGACTATTGAATTTTA 59.184 40.000 0.00 0.00 0.00 1.52
72 73 6.018669 GGACCTGCGAGACTATTGAATTTTAG 60.019 42.308 0.00 0.00 0.00 1.85
73 74 5.817816 ACCTGCGAGACTATTGAATTTTAGG 59.182 40.000 0.00 0.00 0.00 2.69
74 75 5.237344 CCTGCGAGACTATTGAATTTTAGGG 59.763 44.000 0.00 0.00 0.00 3.53
75 76 5.984725 TGCGAGACTATTGAATTTTAGGGA 58.015 37.500 0.00 0.00 0.00 4.20
76 77 6.049149 TGCGAGACTATTGAATTTTAGGGAG 58.951 40.000 0.00 0.00 0.00 4.30
77 78 5.050023 GCGAGACTATTGAATTTTAGGGAGC 60.050 44.000 0.00 0.00 0.00 4.70
78 79 6.284459 CGAGACTATTGAATTTTAGGGAGCT 58.716 40.000 0.00 0.00 0.00 4.09
79 80 6.422400 CGAGACTATTGAATTTTAGGGAGCTC 59.578 42.308 4.71 4.71 0.00 4.09
80 81 7.200434 AGACTATTGAATTTTAGGGAGCTCA 57.800 36.000 17.19 0.00 0.00 4.26
81 82 7.051000 AGACTATTGAATTTTAGGGAGCTCAC 58.949 38.462 17.19 13.15 0.00 3.51
82 83 6.963322 ACTATTGAATTTTAGGGAGCTCACT 58.037 36.000 24.56 24.56 0.00 3.41
83 84 7.051000 ACTATTGAATTTTAGGGAGCTCACTC 58.949 38.462 24.92 7.83 42.66 3.51
84 85 3.861840 TGAATTTTAGGGAGCTCACTCG 58.138 45.455 24.92 0.00 44.48 4.18
90 91 4.803426 GGAGCTCACTCGCACCCG 62.803 72.222 17.19 0.00 44.48 5.28
91 92 4.057428 GAGCTCACTCGCACCCGT 62.057 66.667 9.40 0.00 32.04 5.28
92 93 3.575351 GAGCTCACTCGCACCCGTT 62.575 63.158 9.40 0.00 32.04 4.44
93 94 2.665185 GCTCACTCGCACCCGTTT 60.665 61.111 0.00 0.00 35.54 3.60
94 95 2.954753 GCTCACTCGCACCCGTTTG 61.955 63.158 0.00 0.00 35.54 2.93
95 96 1.300620 CTCACTCGCACCCGTTTGA 60.301 57.895 0.00 0.00 35.54 2.69
96 97 0.670546 CTCACTCGCACCCGTTTGAT 60.671 55.000 0.00 0.00 35.54 2.57
97 98 0.948623 TCACTCGCACCCGTTTGATG 60.949 55.000 0.00 0.00 35.54 3.07
98 99 1.070786 ACTCGCACCCGTTTGATGT 59.929 52.632 0.00 0.00 35.54 3.06
99 100 1.227999 ACTCGCACCCGTTTGATGTG 61.228 55.000 0.00 0.00 35.54 3.21
101 102 2.126888 GCACCCGTTTGATGTGCG 60.127 61.111 0.00 0.00 44.95 5.34
102 103 2.612567 GCACCCGTTTGATGTGCGA 61.613 57.895 0.00 0.00 44.95 5.10
103 104 1.945522 CACCCGTTTGATGTGCGAA 59.054 52.632 0.00 0.00 0.00 4.70
104 105 0.385473 CACCCGTTTGATGTGCGAAC 60.385 55.000 0.00 0.00 37.50 3.95
105 106 0.816018 ACCCGTTTGATGTGCGAACA 60.816 50.000 0.00 0.00 40.32 3.18
106 107 0.521291 CCCGTTTGATGTGCGAACAT 59.479 50.000 9.35 9.35 40.32 2.71
107 108 1.605500 CCGTTTGATGTGCGAACATG 58.394 50.000 15.49 0.00 40.32 3.21
108 109 0.976963 CGTTTGATGTGCGAACATGC 59.023 50.000 15.49 6.39 40.32 4.06
109 110 1.339711 GTTTGATGTGCGAACATGCC 58.660 50.000 15.49 0.27 40.10 4.40
110 111 0.243365 TTTGATGTGCGAACATGCCC 59.757 50.000 15.49 0.00 0.00 5.36
111 112 1.921045 TTGATGTGCGAACATGCCCG 61.921 55.000 15.49 0.00 0.00 6.13
112 113 2.046411 ATGTGCGAACATGCCCGA 60.046 55.556 8.66 0.00 0.00 5.14
113 114 1.439353 GATGTGCGAACATGCCCGAT 61.439 55.000 15.49 0.00 0.00 4.18
114 115 1.717791 ATGTGCGAACATGCCCGATG 61.718 55.000 8.66 0.00 38.15 3.84
116 117 1.087202 GTGCGAACATGCCCGATGTA 61.087 55.000 10.94 0.00 45.12 2.29
117 118 0.179059 TGCGAACATGCCCGATGTAT 60.179 50.000 10.94 0.00 45.12 2.29
118 119 0.235665 GCGAACATGCCCGATGTATG 59.764 55.000 10.94 2.40 45.12 2.39
119 120 1.864565 CGAACATGCCCGATGTATGA 58.135 50.000 9.29 0.00 45.12 2.15
120 121 1.794701 CGAACATGCCCGATGTATGAG 59.205 52.381 9.29 0.00 45.12 2.90
121 122 2.545742 CGAACATGCCCGATGTATGAGA 60.546 50.000 9.29 0.00 45.12 3.27
122 123 3.668447 GAACATGCCCGATGTATGAGAT 58.332 45.455 9.29 0.00 45.12 2.75
123 124 4.618227 CGAACATGCCCGATGTATGAGATA 60.618 45.833 9.29 0.00 45.12 1.98
124 125 4.890158 ACATGCCCGATGTATGAGATAA 57.110 40.909 9.29 0.00 43.96 1.75
125 126 5.227569 ACATGCCCGATGTATGAGATAAA 57.772 39.130 9.29 0.00 43.96 1.40
126 127 5.620206 ACATGCCCGATGTATGAGATAAAA 58.380 37.500 9.29 0.00 43.96 1.52
127 128 6.061441 ACATGCCCGATGTATGAGATAAAAA 58.939 36.000 9.29 0.00 43.96 1.94
128 129 6.716628 ACATGCCCGATGTATGAGATAAAAAT 59.283 34.615 9.29 0.00 43.96 1.82
129 130 7.882791 ACATGCCCGATGTATGAGATAAAAATA 59.117 33.333 9.29 0.00 43.96 1.40
130 131 8.729756 CATGCCCGATGTATGAGATAAAAATAA 58.270 33.333 0.00 0.00 39.21 1.40
131 132 8.322906 TGCCCGATGTATGAGATAAAAATAAG 57.677 34.615 0.00 0.00 0.00 1.73
132 133 7.094805 TGCCCGATGTATGAGATAAAAATAAGC 60.095 37.037 0.00 0.00 0.00 3.09
133 134 7.119846 GCCCGATGTATGAGATAAAAATAAGCT 59.880 37.037 0.00 0.00 0.00 3.74
134 135 9.003658 CCCGATGTATGAGATAAAAATAAGCTT 57.996 33.333 3.48 3.48 0.00 3.74
143 144 9.396022 TGAGATAAAAATAAGCTTAGTCCTTGG 57.604 33.333 12.54 0.00 0.00 3.61
144 145 9.614792 GAGATAAAAATAAGCTTAGTCCTTGGA 57.385 33.333 12.54 0.00 0.00 3.53
145 146 9.620259 AGATAAAAATAAGCTTAGTCCTTGGAG 57.380 33.333 12.54 0.00 0.00 3.86
146 147 9.614792 GATAAAAATAAGCTTAGTCCTTGGAGA 57.385 33.333 12.54 0.00 0.00 3.71
147 148 7.689446 AAAAATAAGCTTAGTCCTTGGAGAC 57.311 36.000 12.54 0.00 37.01 3.36
148 149 4.657436 ATAAGCTTAGTCCTTGGAGACG 57.343 45.455 12.54 0.00 41.83 4.18
149 150 2.217510 AGCTTAGTCCTTGGAGACGA 57.782 50.000 0.00 0.00 41.83 4.20
150 151 2.096248 AGCTTAGTCCTTGGAGACGAG 58.904 52.381 0.00 0.00 41.83 4.18
151 152 1.819903 GCTTAGTCCTTGGAGACGAGT 59.180 52.381 0.00 0.00 41.83 4.18
152 153 2.231721 GCTTAGTCCTTGGAGACGAGTT 59.768 50.000 0.00 0.00 41.83 3.01
153 154 3.306156 GCTTAGTCCTTGGAGACGAGTTT 60.306 47.826 0.00 0.00 41.83 2.66
154 155 4.082354 GCTTAGTCCTTGGAGACGAGTTTA 60.082 45.833 0.00 0.00 41.83 2.01
155 156 5.566230 GCTTAGTCCTTGGAGACGAGTTTAA 60.566 44.000 0.00 0.00 41.83 1.52
156 157 6.600882 TTAGTCCTTGGAGACGAGTTTAAT 57.399 37.500 0.00 0.00 41.83 1.40
157 158 5.074584 AGTCCTTGGAGACGAGTTTAATC 57.925 43.478 0.00 0.00 41.83 1.75
158 159 4.527038 AGTCCTTGGAGACGAGTTTAATCA 59.473 41.667 0.00 0.00 41.83 2.57
159 160 5.187967 AGTCCTTGGAGACGAGTTTAATCAT 59.812 40.000 0.00 0.00 41.83 2.45
160 161 5.875359 GTCCTTGGAGACGAGTTTAATCATT 59.125 40.000 0.00 0.00 40.55 2.57
161 162 6.371825 GTCCTTGGAGACGAGTTTAATCATTT 59.628 38.462 0.00 0.00 40.55 2.32
162 163 6.371548 TCCTTGGAGACGAGTTTAATCATTTG 59.628 38.462 0.00 0.00 40.55 2.32
163 164 6.149474 CCTTGGAGACGAGTTTAATCATTTGT 59.851 38.462 0.00 0.00 40.55 2.83
164 165 6.721571 TGGAGACGAGTTTAATCATTTGTC 57.278 37.500 0.00 0.00 0.00 3.18
165 166 6.464222 TGGAGACGAGTTTAATCATTTGTCT 58.536 36.000 0.00 0.00 38.09 3.41
166 167 6.368791 TGGAGACGAGTTTAATCATTTGTCTG 59.631 38.462 0.00 0.00 35.73 3.51
167 168 6.590292 GGAGACGAGTTTAATCATTTGTCTGA 59.410 38.462 0.00 0.00 35.73 3.27
168 169 7.278868 GGAGACGAGTTTAATCATTTGTCTGAT 59.721 37.037 0.00 0.00 37.47 2.90
169 170 8.553459 AGACGAGTTTAATCATTTGTCTGATT 57.447 30.769 4.85 4.85 45.44 2.57
170 171 8.660373 AGACGAGTTTAATCATTTGTCTGATTC 58.340 33.333 2.78 0.00 43.16 2.52
171 172 8.553459 ACGAGTTTAATCATTTGTCTGATTCT 57.447 30.769 2.78 0.00 43.16 2.40
172 173 9.003658 ACGAGTTTAATCATTTGTCTGATTCTT 57.996 29.630 2.78 0.00 43.16 2.52
189 190 9.121658 TCTGATTCTTATATGTACTATAGCCCG 57.878 37.037 0.00 0.00 0.00 6.13
190 191 8.818622 TGATTCTTATATGTACTATAGCCCGT 57.181 34.615 0.00 0.00 0.00 5.28
191 192 9.910267 TGATTCTTATATGTACTATAGCCCGTA 57.090 33.333 0.00 0.00 0.00 4.02
193 194 7.798596 TCTTATATGTACTATAGCCCGTAGC 57.201 40.000 0.00 0.00 44.25 3.58
205 206 3.823421 CGTAGCAACGCACGGACG 61.823 66.667 0.00 0.00 43.12 4.79
212 213 4.736165 ACGCACGGACGTTTTACT 57.264 50.000 0.00 0.00 45.75 2.24
213 214 3.863681 ACGCACGGACGTTTTACTA 57.136 47.368 0.00 0.00 45.75 1.82
214 215 1.689959 ACGCACGGACGTTTTACTAG 58.310 50.000 0.00 0.00 45.75 2.57
215 216 1.001378 ACGCACGGACGTTTTACTAGT 60.001 47.619 0.00 0.00 45.75 2.57
216 217 1.384409 CGCACGGACGTTTTACTAGTG 59.616 52.381 5.39 0.00 0.00 2.74
217 218 2.397549 GCACGGACGTTTTACTAGTGT 58.602 47.619 5.39 0.00 0.00 3.55
218 219 2.796593 GCACGGACGTTTTACTAGTGTT 59.203 45.455 5.39 0.00 0.00 3.32
219 220 3.121227 GCACGGACGTTTTACTAGTGTTC 60.121 47.826 5.39 0.00 0.00 3.18
220 221 4.293415 CACGGACGTTTTACTAGTGTTCT 58.707 43.478 5.39 0.00 0.00 3.01
221 222 4.147653 CACGGACGTTTTACTAGTGTTCTG 59.852 45.833 5.39 0.73 0.00 3.02
222 223 4.202050 ACGGACGTTTTACTAGTGTTCTGT 60.202 41.667 5.39 0.00 0.00 3.41
223 224 5.008613 ACGGACGTTTTACTAGTGTTCTGTA 59.991 40.000 5.39 0.00 0.00 2.74
224 225 5.566774 CGGACGTTTTACTAGTGTTCTGTAG 59.433 44.000 5.39 0.00 0.00 2.74
225 226 6.442112 GGACGTTTTACTAGTGTTCTGTAGT 58.558 40.000 5.39 0.00 33.92 2.73
226 227 6.361748 GGACGTTTTACTAGTGTTCTGTAGTG 59.638 42.308 5.39 0.00 31.79 2.74
227 228 6.799512 ACGTTTTACTAGTGTTCTGTAGTGT 58.200 36.000 5.39 0.00 31.79 3.55
228 229 7.930217 ACGTTTTACTAGTGTTCTGTAGTGTA 58.070 34.615 5.39 0.00 31.79 2.90
229 230 8.072567 ACGTTTTACTAGTGTTCTGTAGTGTAG 58.927 37.037 5.39 0.00 31.79 2.74
230 231 8.072567 CGTTTTACTAGTGTTCTGTAGTGTAGT 58.927 37.037 5.39 0.00 31.79 2.73
239 240 9.293404 AGTGTTCTGTAGTGTAGTAATTAGACA 57.707 33.333 0.00 0.00 0.00 3.41
240 241 9.339492 GTGTTCTGTAGTGTAGTAATTAGACAC 57.661 37.037 17.34 17.34 43.08 3.67
241 242 8.232513 TGTTCTGTAGTGTAGTAATTAGACACG 58.767 37.037 18.30 9.34 46.44 4.49
242 243 7.312657 TCTGTAGTGTAGTAATTAGACACGG 57.687 40.000 18.30 12.72 46.44 4.94
243 244 5.883661 TGTAGTGTAGTAATTAGACACGGC 58.116 41.667 18.30 15.94 46.44 5.68
244 245 5.415389 TGTAGTGTAGTAATTAGACACGGCA 59.585 40.000 18.30 17.48 46.44 5.69
245 246 5.593679 AGTGTAGTAATTAGACACGGCAT 57.406 39.130 18.30 5.23 46.44 4.40
246 247 5.589192 AGTGTAGTAATTAGACACGGCATC 58.411 41.667 18.30 2.15 46.44 3.91
247 248 5.360144 AGTGTAGTAATTAGACACGGCATCT 59.640 40.000 18.30 4.46 46.44 2.90
248 249 6.040878 GTGTAGTAATTAGACACGGCATCTT 58.959 40.000 12.50 0.00 34.64 2.40
249 250 6.019801 GTGTAGTAATTAGACACGGCATCTTG 60.020 42.308 12.50 0.00 34.64 3.02
250 251 5.086104 AGTAATTAGACACGGCATCTTGT 57.914 39.130 0.00 0.00 0.00 3.16
251 252 5.488341 AGTAATTAGACACGGCATCTTGTT 58.512 37.500 0.00 0.00 0.00 2.83
252 253 5.938125 AGTAATTAGACACGGCATCTTGTTT 59.062 36.000 0.00 0.00 0.00 2.83
253 254 7.101054 AGTAATTAGACACGGCATCTTGTTTA 58.899 34.615 0.00 0.00 0.00 2.01
254 255 6.811253 AATTAGACACGGCATCTTGTTTAA 57.189 33.333 0.00 0.00 30.44 1.52
255 256 7.391148 AATTAGACACGGCATCTTGTTTAAT 57.609 32.000 0.00 0.00 35.47 1.40
256 257 4.946784 AGACACGGCATCTTGTTTAATC 57.053 40.909 0.00 0.00 0.00 1.75
257 258 4.323417 AGACACGGCATCTTGTTTAATCA 58.677 39.130 0.00 0.00 0.00 2.57
258 259 4.393062 AGACACGGCATCTTGTTTAATCAG 59.607 41.667 0.00 0.00 0.00 2.90
259 260 4.072131 ACACGGCATCTTGTTTAATCAGT 58.928 39.130 0.00 0.00 0.00 3.41
260 261 5.242434 ACACGGCATCTTGTTTAATCAGTA 58.758 37.500 0.00 0.00 0.00 2.74
261 262 5.121768 ACACGGCATCTTGTTTAATCAGTAC 59.878 40.000 0.00 0.00 0.00 2.73
262 263 5.121611 CACGGCATCTTGTTTAATCAGTACA 59.878 40.000 0.00 0.00 0.00 2.90
263 264 5.121768 ACGGCATCTTGTTTAATCAGTACAC 59.878 40.000 0.00 0.00 0.00 2.90
264 265 5.121611 CGGCATCTTGTTTAATCAGTACACA 59.878 40.000 0.00 0.00 0.00 3.72
265 266 6.183360 CGGCATCTTGTTTAATCAGTACACAT 60.183 38.462 0.00 0.00 0.00 3.21
266 267 6.968904 GGCATCTTGTTTAATCAGTACACATG 59.031 38.462 0.00 0.00 0.00 3.21
267 268 7.148255 GGCATCTTGTTTAATCAGTACACATGA 60.148 37.037 0.00 0.00 33.52 3.07
268 269 8.400947 GCATCTTGTTTAATCAGTACACATGAT 58.599 33.333 0.00 0.00 37.58 2.45
269 270 9.712359 CATCTTGTTTAATCAGTACACATGATG 57.288 33.333 10.90 10.90 42.49 3.07
270 271 9.671279 ATCTTGTTTAATCAGTACACATGATGA 57.329 29.630 0.00 0.00 36.58 2.92
271 272 9.671279 TCTTGTTTAATCAGTACACATGATGAT 57.329 29.630 0.00 0.00 37.46 2.45
281 282 8.465201 TCAGTACACATGATGATATATCTCAGC 58.535 37.037 13.79 0.00 32.23 4.26
282 283 7.431668 CAGTACACATGATGATATATCTCAGCG 59.568 40.741 13.79 11.36 34.30 5.18
283 284 5.658468 ACACATGATGATATATCTCAGCGG 58.342 41.667 13.79 10.24 34.30 5.52
284 285 4.507021 CACATGATGATATATCTCAGCGGC 59.493 45.833 13.79 0.00 34.30 6.53
285 286 3.427161 TGATGATATATCTCAGCGGCG 57.573 47.619 13.79 0.51 34.30 6.46
286 287 2.123342 GATGATATATCTCAGCGGCGC 58.877 52.381 26.86 26.86 0.00 6.53
287 288 0.173481 TGATATATCTCAGCGGCGCC 59.827 55.000 30.40 19.07 0.00 6.53
288 289 0.867753 GATATATCTCAGCGGCGCCG 60.868 60.000 43.13 43.13 43.09 6.46
301 302 4.801624 CGCCGCTAGCTGCAGTGA 62.802 66.667 27.46 2.32 43.06 3.41
302 303 3.191539 GCCGCTAGCTGCAGTGAC 61.192 66.667 24.24 0.00 43.06 3.67
303 304 2.510238 CCGCTAGCTGCAGTGACC 60.510 66.667 16.64 0.00 43.06 4.02
304 305 2.262603 CGCTAGCTGCAGTGACCA 59.737 61.111 16.64 0.00 43.06 4.02
305 306 2.097038 CGCTAGCTGCAGTGACCAC 61.097 63.158 16.64 0.00 43.06 4.16
306 307 1.004560 GCTAGCTGCAGTGACCACA 60.005 57.895 16.64 0.00 42.31 4.17
307 308 1.294659 GCTAGCTGCAGTGACCACAC 61.295 60.000 16.64 0.00 46.24 3.82
319 320 4.939509 GTGACCACACACGCTTAATTAT 57.060 40.909 0.00 0.00 45.32 1.28
320 321 5.291293 GTGACCACACACGCTTAATTATT 57.709 39.130 0.00 0.00 45.32 1.40
321 322 5.086058 GTGACCACACACGCTTAATTATTG 58.914 41.667 0.00 0.00 45.32 1.90
322 323 4.155099 TGACCACACACGCTTAATTATTGG 59.845 41.667 0.00 0.00 0.00 3.16
323 324 3.119637 ACCACACACGCTTAATTATTGGC 60.120 43.478 0.00 0.00 0.00 4.52
324 325 3.128589 CCACACACGCTTAATTATTGGCT 59.871 43.478 0.00 0.00 0.00 4.75
325 326 4.380444 CCACACACGCTTAATTATTGGCTT 60.380 41.667 0.00 0.00 0.00 4.35
326 327 5.160641 CACACACGCTTAATTATTGGCTTT 58.839 37.500 0.00 0.00 0.00 3.51
327 328 6.318628 CACACACGCTTAATTATTGGCTTTA 58.681 36.000 0.00 0.00 0.00 1.85
328 329 6.468956 CACACACGCTTAATTATTGGCTTTAG 59.531 38.462 0.00 0.00 0.00 1.85
329 330 6.150474 ACACACGCTTAATTATTGGCTTTAGT 59.850 34.615 0.00 0.00 0.00 2.24
330 331 7.027161 CACACGCTTAATTATTGGCTTTAGTT 58.973 34.615 0.00 0.00 0.00 2.24
331 332 8.178964 CACACGCTTAATTATTGGCTTTAGTTA 58.821 33.333 0.00 0.00 0.00 2.24
332 333 8.732531 ACACGCTTAATTATTGGCTTTAGTTAA 58.267 29.630 0.00 0.00 0.00 2.01
333 334 9.006215 CACGCTTAATTATTGGCTTTAGTTAAC 57.994 33.333 0.00 0.00 0.00 2.01
334 335 8.732531 ACGCTTAATTATTGGCTTTAGTTAACA 58.267 29.630 8.61 0.00 0.00 2.41
335 336 9.562583 CGCTTAATTATTGGCTTTAGTTAACAA 57.437 29.630 8.61 0.00 0.00 2.83
342 343 9.685828 TTATTGGCTTTAGTTAACAATTGACAC 57.314 29.630 13.59 5.44 34.08 3.67
343 344 6.079424 TGGCTTTAGTTAACAATTGACACC 57.921 37.500 13.59 0.00 0.00 4.16
344 345 5.151389 GGCTTTAGTTAACAATTGACACCG 58.849 41.667 13.59 0.00 0.00 4.94
345 346 5.049267 GGCTTTAGTTAACAATTGACACCGA 60.049 40.000 13.59 0.00 0.00 4.69
346 347 6.077838 GCTTTAGTTAACAATTGACACCGAG 58.922 40.000 13.59 5.11 0.00 4.63
347 348 6.073440 GCTTTAGTTAACAATTGACACCGAGA 60.073 38.462 13.59 0.00 0.00 4.04
348 349 7.416154 TTTAGTTAACAATTGACACCGAGAG 57.584 36.000 13.59 0.00 0.00 3.20
361 362 3.487576 CGAGAGGCTGAGTAGAGGT 57.512 57.895 0.00 0.00 0.00 3.85
362 363 1.757682 CGAGAGGCTGAGTAGAGGTT 58.242 55.000 0.00 0.00 0.00 3.50
363 364 2.096248 CGAGAGGCTGAGTAGAGGTTT 58.904 52.381 0.00 0.00 0.00 3.27
364 365 3.280295 CGAGAGGCTGAGTAGAGGTTTA 58.720 50.000 0.00 0.00 0.00 2.01
365 366 3.065648 CGAGAGGCTGAGTAGAGGTTTAC 59.934 52.174 0.00 0.00 0.00 2.01
366 367 3.367321 AGAGGCTGAGTAGAGGTTTACC 58.633 50.000 0.00 0.00 0.00 2.85
367 368 3.097614 GAGGCTGAGTAGAGGTTTACCA 58.902 50.000 0.00 0.00 38.89 3.25
368 369 3.707102 GAGGCTGAGTAGAGGTTTACCAT 59.293 47.826 0.00 0.00 38.89 3.55
369 370 3.452627 AGGCTGAGTAGAGGTTTACCATG 59.547 47.826 1.13 0.00 38.89 3.66
370 371 3.451178 GGCTGAGTAGAGGTTTACCATGA 59.549 47.826 1.13 0.00 38.89 3.07
371 372 4.081087 GGCTGAGTAGAGGTTTACCATGAA 60.081 45.833 1.13 0.00 38.89 2.57
372 373 5.396884 GGCTGAGTAGAGGTTTACCATGAAT 60.397 44.000 1.13 0.00 38.89 2.57
373 374 5.525378 GCTGAGTAGAGGTTTACCATGAATG 59.475 44.000 1.13 0.00 38.89 2.67
374 375 6.630413 GCTGAGTAGAGGTTTACCATGAATGA 60.630 42.308 1.13 0.00 38.89 2.57
375 376 6.640518 TGAGTAGAGGTTTACCATGAATGAC 58.359 40.000 1.13 0.00 38.89 3.06
376 377 6.212589 TGAGTAGAGGTTTACCATGAATGACA 59.787 38.462 1.13 0.00 38.89 3.58
377 378 7.092891 TGAGTAGAGGTTTACCATGAATGACAT 60.093 37.037 1.13 0.00 40.17 3.06
378 379 7.275920 AGTAGAGGTTTACCATGAATGACATC 58.724 38.462 1.13 0.00 37.07 3.06
379 380 5.440610 AGAGGTTTACCATGAATGACATCC 58.559 41.667 1.13 0.00 37.07 3.51
380 381 4.199310 AGGTTTACCATGAATGACATCCG 58.801 43.478 1.13 0.00 37.07 4.18
381 382 3.315191 GGTTTACCATGAATGACATCCGG 59.685 47.826 0.00 0.00 37.07 5.14
382 383 3.924114 TTACCATGAATGACATCCGGT 57.076 42.857 0.00 0.00 38.36 5.28
383 384 5.120399 GTTTACCATGAATGACATCCGGTA 58.880 41.667 0.00 0.00 36.85 4.02
384 385 3.194005 ACCATGAATGACATCCGGTAC 57.806 47.619 0.00 0.00 34.75 3.34
385 386 2.135139 CCATGAATGACATCCGGTACG 58.865 52.381 0.00 0.00 45.02 3.67
386 387 2.483013 CCATGAATGACATCCGGTACGT 60.483 50.000 0.00 0.00 44.29 3.57
387 388 3.243602 CCATGAATGACATCCGGTACGTA 60.244 47.826 0.00 0.00 44.29 3.57
388 389 3.734231 CATGAATGACATCCGGTACGTAC 59.266 47.826 17.56 17.56 44.29 3.67
389 390 5.595598 CATGAATGACATCCGGTACGTACG 61.596 50.000 18.98 15.01 44.29 3.67
390 391 7.932160 CATGAATGACATCCGGTACGTACGT 62.932 48.000 25.98 25.98 44.29 3.57
406 407 4.447365 GTCCGTACGACCGAGTTG 57.553 61.111 18.76 0.00 35.23 3.16
407 408 1.799121 GTCCGTACGACCGAGTTGC 60.799 63.158 18.76 0.00 35.23 4.17
408 409 2.872925 CCGTACGACCGAGTTGCG 60.873 66.667 18.76 0.00 40.47 4.85
409 410 3.530104 CGTACGACCGAGTTGCGC 61.530 66.667 10.44 0.00 39.11 6.09
410 411 2.126580 GTACGACCGAGTTGCGCT 60.127 61.111 9.73 0.00 39.11 5.92
411 412 1.731969 GTACGACCGAGTTGCGCTT 60.732 57.895 9.73 0.00 39.11 4.68
412 413 1.731613 TACGACCGAGTTGCGCTTG 60.732 57.895 9.73 0.00 39.11 4.01
416 417 2.434185 CCGAGTTGCGCTTGGCTA 60.434 61.111 9.73 0.00 41.59 3.93
417 418 2.740714 CCGAGTTGCGCTTGGCTAC 61.741 63.158 9.73 0.00 45.98 3.58
432 433 1.486211 GCTACTTAGCTCCACCTGGA 58.514 55.000 0.00 0.00 45.62 3.86
433 434 2.043227 GCTACTTAGCTCCACCTGGAT 58.957 52.381 0.00 0.00 44.46 3.41
434 435 2.224161 GCTACTTAGCTCCACCTGGATG 60.224 54.545 0.00 0.00 44.46 3.51
435 436 2.254152 ACTTAGCTCCACCTGGATGA 57.746 50.000 0.00 0.00 44.46 2.92
436 437 1.834263 ACTTAGCTCCACCTGGATGAC 59.166 52.381 0.00 0.00 44.46 3.06
471 472 4.388577 AGCTAAATGGAACCCTGAACTT 57.611 40.909 0.00 0.00 0.00 2.66
495 496 6.240894 TCTAATTCCTGAAATGAGCACACTT 58.759 36.000 0.00 0.00 0.00 3.16
508 509 6.346477 TGAGCACACTTAACTCACTAATCT 57.654 37.500 0.00 0.00 35.58 2.40
1110 1298 1.909302 GAGGGGGTGTCAGAGATTGAA 59.091 52.381 0.00 0.00 37.61 2.69
1222 1410 3.091633 AGGACTGAATTGGTTGATGGG 57.908 47.619 0.00 0.00 0.00 4.00
1505 1997 2.352034 GCAGCTGTTCAGATGATGACAG 59.648 50.000 19.93 9.38 37.77 3.51
1585 2109 4.465305 AGCTTAGAAGGCATGCAAGAAAAT 59.535 37.500 21.36 0.60 0.00 1.82
1586 2110 5.046807 AGCTTAGAAGGCATGCAAGAAAATT 60.047 36.000 21.36 1.83 0.00 1.82
1587 2111 5.290400 GCTTAGAAGGCATGCAAGAAAATTC 59.710 40.000 21.36 10.77 0.00 2.17
1588 2112 4.877378 AGAAGGCATGCAAGAAAATTCA 57.123 36.364 21.36 0.00 0.00 2.57
1589 2113 5.217978 AGAAGGCATGCAAGAAAATTCAA 57.782 34.783 21.36 0.00 0.00 2.69
1590 2114 5.235516 AGAAGGCATGCAAGAAAATTCAAG 58.764 37.500 21.36 0.00 0.00 3.02
1591 2115 4.877378 AGGCATGCAAGAAAATTCAAGA 57.123 36.364 21.36 0.00 0.00 3.02
1592 2116 5.217978 AGGCATGCAAGAAAATTCAAGAA 57.782 34.783 21.36 0.00 0.00 2.52
1593 2117 5.613329 AGGCATGCAAGAAAATTCAAGAAA 58.387 33.333 21.36 0.00 0.00 2.52
1594 2118 6.056884 AGGCATGCAAGAAAATTCAAGAAAA 58.943 32.000 21.36 0.00 0.00 2.29
1595 2119 6.543100 AGGCATGCAAGAAAATTCAAGAAAAA 59.457 30.769 21.36 0.00 0.00 1.94
1675 2199 5.857471 TTTGATTGCAAATATGGAGGAGG 57.143 39.130 1.71 0.00 38.99 4.30
1776 2308 3.180507 AGAGGATGAAGAGCCAGTTTCT 58.819 45.455 0.00 0.00 0.00 2.52
1898 2430 5.807011 GTGACAAAAAGAAGCATTGTGTTCT 59.193 36.000 0.00 0.00 37.41 3.01
2110 2644 5.725325 TCATTCTTGCAAATCCAATGTGA 57.275 34.783 0.00 0.00 0.00 3.58
2452 2986 2.985847 GGGGAGCTGTTGTGTGCC 60.986 66.667 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.536570 TGACGAGAAATGTGGTTGTTCA 58.463 40.909 0.00 0.00 0.00 3.18
4 5 4.261572 CCATTGACGAGAAATGTGGTTGTT 60.262 41.667 0.00 0.00 33.93 2.83
5 6 3.253188 CCATTGACGAGAAATGTGGTTGT 59.747 43.478 0.00 0.00 33.93 3.32
6 7 3.366273 CCCATTGACGAGAAATGTGGTTG 60.366 47.826 0.00 0.00 33.93 3.77
7 8 2.819608 CCCATTGACGAGAAATGTGGTT 59.180 45.455 0.00 0.00 33.93 3.67
8 9 2.436417 CCCATTGACGAGAAATGTGGT 58.564 47.619 0.00 0.00 33.93 4.16
9 10 1.133025 GCCCATTGACGAGAAATGTGG 59.867 52.381 0.00 1.71 33.93 4.17
10 11 2.086869 AGCCCATTGACGAGAAATGTG 58.913 47.619 0.00 0.00 33.93 3.21
11 12 2.086869 CAGCCCATTGACGAGAAATGT 58.913 47.619 0.00 0.00 33.93 2.71
12 13 1.402968 CCAGCCCATTGACGAGAAATG 59.597 52.381 0.00 0.00 35.26 2.32
13 14 1.281867 TCCAGCCCATTGACGAGAAAT 59.718 47.619 0.00 0.00 0.00 2.17
14 15 0.690192 TCCAGCCCATTGACGAGAAA 59.310 50.000 0.00 0.00 0.00 2.52
15 16 0.911769 ATCCAGCCCATTGACGAGAA 59.088 50.000 0.00 0.00 0.00 2.87
16 17 0.911769 AATCCAGCCCATTGACGAGA 59.088 50.000 0.00 0.00 0.00 4.04
17 18 1.755179 AAATCCAGCCCATTGACGAG 58.245 50.000 0.00 0.00 0.00 4.18
18 19 1.818060 CAAAATCCAGCCCATTGACGA 59.182 47.619 0.00 0.00 0.00 4.20
19 20 1.135024 CCAAAATCCAGCCCATTGACG 60.135 52.381 0.00 0.00 0.00 4.35
20 21 1.207811 CCCAAAATCCAGCCCATTGAC 59.792 52.381 0.00 0.00 0.00 3.18
21 22 1.570803 CCCAAAATCCAGCCCATTGA 58.429 50.000 0.00 0.00 0.00 2.57
22 23 0.542805 CCCCAAAATCCAGCCCATTG 59.457 55.000 0.00 0.00 0.00 2.82
23 24 0.417035 TCCCCAAAATCCAGCCCATT 59.583 50.000 0.00 0.00 0.00 3.16
24 25 0.031817 CTCCCCAAAATCCAGCCCAT 60.032 55.000 0.00 0.00 0.00 4.00
25 26 1.145900 TCTCCCCAAAATCCAGCCCA 61.146 55.000 0.00 0.00 0.00 5.36
26 27 0.684479 GTCTCCCCAAAATCCAGCCC 60.684 60.000 0.00 0.00 0.00 5.19
27 28 0.684479 GGTCTCCCCAAAATCCAGCC 60.684 60.000 0.00 0.00 0.00 4.85
28 29 1.032114 CGGTCTCCCCAAAATCCAGC 61.032 60.000 0.00 0.00 0.00 4.85
29 30 0.394352 CCGGTCTCCCCAAAATCCAG 60.394 60.000 0.00 0.00 0.00 3.86
30 31 0.842905 TCCGGTCTCCCCAAAATCCA 60.843 55.000 0.00 0.00 0.00 3.41
31 32 0.393944 GTCCGGTCTCCCCAAAATCC 60.394 60.000 0.00 0.00 0.00 3.01
32 33 0.393944 GGTCCGGTCTCCCCAAAATC 60.394 60.000 0.00 0.00 0.00 2.17
33 34 0.845102 AGGTCCGGTCTCCCCAAAAT 60.845 55.000 0.00 0.00 0.00 1.82
34 35 1.462627 AGGTCCGGTCTCCCCAAAA 60.463 57.895 0.00 0.00 0.00 2.44
35 36 2.206036 AGGTCCGGTCTCCCCAAA 59.794 61.111 0.00 0.00 0.00 3.28
36 37 2.606519 CAGGTCCGGTCTCCCCAA 60.607 66.667 0.00 0.00 0.00 4.12
40 41 3.827898 CTCGCAGGTCCGGTCTCC 61.828 72.222 0.00 2.95 0.00 3.71
41 42 2.750637 TCTCGCAGGTCCGGTCTC 60.751 66.667 0.00 0.00 0.00 3.36
42 43 2.194388 TAGTCTCGCAGGTCCGGTCT 62.194 60.000 0.00 0.00 0.00 3.85
43 44 1.102222 ATAGTCTCGCAGGTCCGGTC 61.102 60.000 0.00 0.00 0.00 4.79
44 45 0.683504 AATAGTCTCGCAGGTCCGGT 60.684 55.000 0.00 0.00 0.00 5.28
45 46 0.249073 CAATAGTCTCGCAGGTCCGG 60.249 60.000 0.00 0.00 0.00 5.14
46 47 0.738975 TCAATAGTCTCGCAGGTCCG 59.261 55.000 0.00 0.00 0.00 4.79
47 48 2.961526 TTCAATAGTCTCGCAGGTCC 57.038 50.000 0.00 0.00 0.00 4.46
48 49 5.803020 AAAATTCAATAGTCTCGCAGGTC 57.197 39.130 0.00 0.00 0.00 3.85
49 50 5.817816 CCTAAAATTCAATAGTCTCGCAGGT 59.182 40.000 0.00 0.00 0.00 4.00
50 51 5.237344 CCCTAAAATTCAATAGTCTCGCAGG 59.763 44.000 0.00 0.00 0.00 4.85
51 52 6.049149 TCCCTAAAATTCAATAGTCTCGCAG 58.951 40.000 0.00 0.00 0.00 5.18
52 53 5.984725 TCCCTAAAATTCAATAGTCTCGCA 58.015 37.500 0.00 0.00 0.00 5.10
53 54 5.050023 GCTCCCTAAAATTCAATAGTCTCGC 60.050 44.000 0.00 0.00 0.00 5.03
54 55 6.284459 AGCTCCCTAAAATTCAATAGTCTCG 58.716 40.000 0.00 0.00 0.00 4.04
55 56 7.225734 GTGAGCTCCCTAAAATTCAATAGTCTC 59.774 40.741 12.15 0.00 0.00 3.36
56 57 7.051000 GTGAGCTCCCTAAAATTCAATAGTCT 58.949 38.462 12.15 0.00 0.00 3.24
57 58 7.051000 AGTGAGCTCCCTAAAATTCAATAGTC 58.949 38.462 12.15 0.00 0.00 2.59
58 59 6.963322 AGTGAGCTCCCTAAAATTCAATAGT 58.037 36.000 12.15 0.00 0.00 2.12
59 60 6.201806 CGAGTGAGCTCCCTAAAATTCAATAG 59.798 42.308 12.15 0.00 38.49 1.73
60 61 6.049149 CGAGTGAGCTCCCTAAAATTCAATA 58.951 40.000 12.15 0.00 38.49 1.90
61 62 4.878397 CGAGTGAGCTCCCTAAAATTCAAT 59.122 41.667 12.15 0.00 38.49 2.57
62 63 4.253685 CGAGTGAGCTCCCTAAAATTCAA 58.746 43.478 12.15 0.00 38.49 2.69
63 64 3.861840 CGAGTGAGCTCCCTAAAATTCA 58.138 45.455 12.15 0.00 38.49 2.57
64 65 2.609916 GCGAGTGAGCTCCCTAAAATTC 59.390 50.000 12.15 0.00 38.49 2.17
65 66 2.027192 TGCGAGTGAGCTCCCTAAAATT 60.027 45.455 12.15 0.00 38.49 1.82
66 67 1.555075 TGCGAGTGAGCTCCCTAAAAT 59.445 47.619 12.15 0.00 38.49 1.82
67 68 0.973632 TGCGAGTGAGCTCCCTAAAA 59.026 50.000 12.15 0.00 38.49 1.52
68 69 0.246635 GTGCGAGTGAGCTCCCTAAA 59.753 55.000 12.15 0.00 38.49 1.85
69 70 1.605058 GGTGCGAGTGAGCTCCCTAA 61.605 60.000 12.15 0.00 42.98 2.69
70 71 2.052690 GGTGCGAGTGAGCTCCCTA 61.053 63.158 12.15 0.00 42.98 3.53
71 72 3.386237 GGTGCGAGTGAGCTCCCT 61.386 66.667 12.15 4.36 42.98 4.20
73 74 4.803426 CGGGTGCGAGTGAGCTCC 62.803 72.222 12.15 2.40 46.68 4.70
74 75 3.575351 AACGGGTGCGAGTGAGCTC 62.575 63.158 6.82 6.82 38.13 4.09
75 76 3.165160 AAACGGGTGCGAGTGAGCT 62.165 57.895 0.00 0.00 38.13 4.09
76 77 2.665185 AAACGGGTGCGAGTGAGC 60.665 61.111 0.00 0.00 37.71 4.26
77 78 0.670546 ATCAAACGGGTGCGAGTGAG 60.671 55.000 0.00 0.00 0.00 3.51
78 79 0.948623 CATCAAACGGGTGCGAGTGA 60.949 55.000 0.00 0.00 0.00 3.41
79 80 1.227999 ACATCAAACGGGTGCGAGTG 61.228 55.000 0.00 0.00 0.00 3.51
80 81 1.070786 ACATCAAACGGGTGCGAGT 59.929 52.632 0.00 0.00 0.00 4.18
81 82 1.497278 CACATCAAACGGGTGCGAG 59.503 57.895 0.00 0.00 0.00 5.03
82 83 2.612567 GCACATCAAACGGGTGCGA 61.613 57.895 0.00 0.00 46.94 5.10
83 84 2.126888 GCACATCAAACGGGTGCG 60.127 61.111 0.00 0.00 46.94 5.34
85 86 0.385473 GTTCGCACATCAAACGGGTG 60.385 55.000 0.00 0.00 35.68 4.61
86 87 0.816018 TGTTCGCACATCAAACGGGT 60.816 50.000 0.00 0.00 0.00 5.28
87 88 0.521291 ATGTTCGCACATCAAACGGG 59.479 50.000 0.00 0.00 39.69 5.28
88 89 1.605500 CATGTTCGCACATCAAACGG 58.394 50.000 0.00 0.00 42.14 4.44
89 90 0.976963 GCATGTTCGCACATCAAACG 59.023 50.000 0.00 0.00 42.14 3.60
90 91 1.339711 GGCATGTTCGCACATCAAAC 58.660 50.000 0.00 0.00 42.14 2.93
91 92 0.243365 GGGCATGTTCGCACATCAAA 59.757 50.000 0.00 0.00 42.14 2.69
92 93 1.882311 GGGCATGTTCGCACATCAA 59.118 52.632 0.00 0.00 42.14 2.57
93 94 2.397754 CGGGCATGTTCGCACATCA 61.398 57.895 0.00 0.00 42.14 3.07
94 95 1.439353 ATCGGGCATGTTCGCACATC 61.439 55.000 0.00 0.00 42.14 3.06
95 96 1.451927 ATCGGGCATGTTCGCACAT 60.452 52.632 0.00 0.00 45.18 3.21
96 97 2.046411 ATCGGGCATGTTCGCACA 60.046 55.556 0.00 0.00 33.79 4.57
97 98 1.087202 TACATCGGGCATGTTCGCAC 61.087 55.000 0.00 0.00 43.89 5.34
98 99 0.179059 ATACATCGGGCATGTTCGCA 60.179 50.000 0.00 0.00 43.89 5.10
99 100 0.235665 CATACATCGGGCATGTTCGC 59.764 55.000 0.00 0.00 43.89 4.70
100 101 1.794701 CTCATACATCGGGCATGTTCG 59.205 52.381 0.00 0.00 43.89 3.95
101 102 3.111853 TCTCATACATCGGGCATGTTC 57.888 47.619 0.00 0.00 43.89 3.18
102 103 3.777106 ATCTCATACATCGGGCATGTT 57.223 42.857 0.00 0.00 43.89 2.71
104 105 6.558771 TTTTTATCTCATACATCGGGCATG 57.441 37.500 0.00 0.00 38.64 4.06
105 106 8.862325 TTATTTTTATCTCATACATCGGGCAT 57.138 30.769 0.00 0.00 0.00 4.40
106 107 7.094805 GCTTATTTTTATCTCATACATCGGGCA 60.095 37.037 0.00 0.00 0.00 5.36
107 108 7.119846 AGCTTATTTTTATCTCATACATCGGGC 59.880 37.037 0.00 0.00 0.00 6.13
108 109 8.553459 AGCTTATTTTTATCTCATACATCGGG 57.447 34.615 0.00 0.00 0.00 5.14
117 118 9.396022 CCAAGGACTAAGCTTATTTTTATCTCA 57.604 33.333 6.64 0.00 0.00 3.27
118 119 9.614792 TCCAAGGACTAAGCTTATTTTTATCTC 57.385 33.333 6.64 0.00 0.00 2.75
119 120 9.620259 CTCCAAGGACTAAGCTTATTTTTATCT 57.380 33.333 6.64 0.00 0.00 1.98
120 121 9.614792 TCTCCAAGGACTAAGCTTATTTTTATC 57.385 33.333 6.64 0.00 0.00 1.75
121 122 9.397280 GTCTCCAAGGACTAAGCTTATTTTTAT 57.603 33.333 6.64 0.00 33.81 1.40
122 123 7.548075 CGTCTCCAAGGACTAAGCTTATTTTTA 59.452 37.037 6.64 0.00 34.38 1.52
123 124 6.371825 CGTCTCCAAGGACTAAGCTTATTTTT 59.628 38.462 6.64 0.00 34.38 1.94
124 125 5.875359 CGTCTCCAAGGACTAAGCTTATTTT 59.125 40.000 6.64 0.00 34.38 1.82
125 126 5.187186 TCGTCTCCAAGGACTAAGCTTATTT 59.813 40.000 6.64 0.00 34.38 1.40
126 127 4.710375 TCGTCTCCAAGGACTAAGCTTATT 59.290 41.667 6.64 0.41 34.38 1.40
127 128 4.279145 TCGTCTCCAAGGACTAAGCTTAT 58.721 43.478 6.64 0.00 34.38 1.73
128 129 3.693807 TCGTCTCCAAGGACTAAGCTTA 58.306 45.455 5.94 5.94 34.38 3.09
129 130 2.494073 CTCGTCTCCAAGGACTAAGCTT 59.506 50.000 3.48 3.48 34.38 3.74
130 131 2.096248 CTCGTCTCCAAGGACTAAGCT 58.904 52.381 0.00 0.00 34.38 3.74
131 132 1.819903 ACTCGTCTCCAAGGACTAAGC 59.180 52.381 0.00 0.00 34.38 3.09
132 133 4.522722 AAACTCGTCTCCAAGGACTAAG 57.477 45.455 0.00 0.00 34.38 2.18
133 134 6.209986 TGATTAAACTCGTCTCCAAGGACTAA 59.790 38.462 0.00 0.00 34.38 2.24
134 135 5.713389 TGATTAAACTCGTCTCCAAGGACTA 59.287 40.000 0.00 0.00 34.38 2.59
135 136 4.527038 TGATTAAACTCGTCTCCAAGGACT 59.473 41.667 0.00 0.00 34.38 3.85
136 137 4.817517 TGATTAAACTCGTCTCCAAGGAC 58.182 43.478 0.00 0.00 0.00 3.85
137 138 5.677319 ATGATTAAACTCGTCTCCAAGGA 57.323 39.130 0.00 0.00 0.00 3.36
138 139 6.149474 ACAAATGATTAAACTCGTCTCCAAGG 59.851 38.462 0.00 0.00 0.00 3.61
139 140 7.118390 AGACAAATGATTAAACTCGTCTCCAAG 59.882 37.037 0.00 0.00 0.00 3.61
140 141 6.934645 AGACAAATGATTAAACTCGTCTCCAA 59.065 34.615 0.00 0.00 0.00 3.53
141 142 6.368791 CAGACAAATGATTAAACTCGTCTCCA 59.631 38.462 0.00 0.00 30.35 3.86
142 143 6.590292 TCAGACAAATGATTAAACTCGTCTCC 59.410 38.462 0.00 0.00 30.35 3.71
143 144 7.582435 TCAGACAAATGATTAAACTCGTCTC 57.418 36.000 0.00 0.00 30.35 3.36
144 145 8.553459 AATCAGACAAATGATTAAACTCGTCT 57.447 30.769 0.25 0.00 45.75 4.18
163 164 9.121658 CGGGCTATAGTACATATAAGAATCAGA 57.878 37.037 0.84 0.00 0.00 3.27
164 165 8.904834 ACGGGCTATAGTACATATAAGAATCAG 58.095 37.037 0.84 0.00 0.00 2.90
165 166 8.818622 ACGGGCTATAGTACATATAAGAATCA 57.181 34.615 0.84 0.00 0.00 2.57
167 168 8.848182 GCTACGGGCTATAGTACATATAAGAAT 58.152 37.037 0.84 0.00 38.06 2.40
168 169 7.830697 TGCTACGGGCTATAGTACATATAAGAA 59.169 37.037 0.84 0.00 42.39 2.52
169 170 7.341030 TGCTACGGGCTATAGTACATATAAGA 58.659 38.462 0.84 0.00 42.39 2.10
170 171 7.563888 TGCTACGGGCTATAGTACATATAAG 57.436 40.000 0.84 0.00 42.39 1.73
171 172 7.414429 CGTTGCTACGGGCTATAGTACATATAA 60.414 40.741 13.04 0.00 43.94 0.98
172 173 6.037500 CGTTGCTACGGGCTATAGTACATATA 59.962 42.308 13.04 0.00 43.94 0.86
173 174 5.163683 CGTTGCTACGGGCTATAGTACATAT 60.164 44.000 13.04 0.00 43.94 1.78
174 175 4.154737 CGTTGCTACGGGCTATAGTACATA 59.845 45.833 13.04 0.00 43.94 2.29
175 176 3.057736 CGTTGCTACGGGCTATAGTACAT 60.058 47.826 13.04 0.00 43.94 2.29
176 177 2.291465 CGTTGCTACGGGCTATAGTACA 59.709 50.000 13.04 0.00 43.94 2.90
177 178 2.926165 CGTTGCTACGGGCTATAGTAC 58.074 52.381 13.04 0.00 43.94 2.73
189 190 2.732094 ACGTCCGTGCGTTGCTAC 60.732 61.111 0.00 0.00 43.04 3.58
196 197 1.384409 CACTAGTAAAACGTCCGTGCG 59.616 52.381 0.00 0.00 37.94 5.34
197 198 2.397549 ACACTAGTAAAACGTCCGTGC 58.602 47.619 0.00 0.00 0.00 5.34
198 199 4.147653 CAGAACACTAGTAAAACGTCCGTG 59.852 45.833 0.00 0.00 0.00 4.94
199 200 4.202050 ACAGAACACTAGTAAAACGTCCGT 60.202 41.667 0.00 0.00 0.00 4.69
200 201 4.293415 ACAGAACACTAGTAAAACGTCCG 58.707 43.478 0.00 0.00 0.00 4.79
201 202 6.361748 CACTACAGAACACTAGTAAAACGTCC 59.638 42.308 0.00 0.00 0.00 4.79
202 203 6.914757 ACACTACAGAACACTAGTAAAACGTC 59.085 38.462 0.00 0.00 0.00 4.34
203 204 6.799512 ACACTACAGAACACTAGTAAAACGT 58.200 36.000 0.00 0.00 0.00 3.99
204 205 8.072567 ACTACACTACAGAACACTAGTAAAACG 58.927 37.037 0.00 0.00 0.00 3.60
213 214 9.293404 TGTCTAATTACTACACTACAGAACACT 57.707 33.333 0.00 0.00 0.00 3.55
214 215 9.339492 GTGTCTAATTACTACACTACAGAACAC 57.661 37.037 14.82 0.00 40.25 3.32
215 216 8.232513 CGTGTCTAATTACTACACTACAGAACA 58.767 37.037 17.81 0.00 41.03 3.18
216 217 7.695618 CCGTGTCTAATTACTACACTACAGAAC 59.304 40.741 17.81 0.52 41.03 3.01
217 218 7.627088 GCCGTGTCTAATTACTACACTACAGAA 60.627 40.741 17.81 0.00 41.03 3.02
218 219 6.183360 GCCGTGTCTAATTACTACACTACAGA 60.183 42.308 17.81 0.00 41.03 3.41
219 220 5.970023 GCCGTGTCTAATTACTACACTACAG 59.030 44.000 17.81 9.46 41.03 2.74
220 221 5.415389 TGCCGTGTCTAATTACTACACTACA 59.585 40.000 17.81 14.13 41.03 2.74
221 222 5.883661 TGCCGTGTCTAATTACTACACTAC 58.116 41.667 17.81 12.54 41.03 2.73
222 223 6.544931 AGATGCCGTGTCTAATTACTACACTA 59.455 38.462 17.81 9.27 41.03 2.74
223 224 5.360144 AGATGCCGTGTCTAATTACTACACT 59.640 40.000 17.81 5.64 41.03 3.55
224 225 5.589192 AGATGCCGTGTCTAATTACTACAC 58.411 41.667 13.07 13.07 40.05 2.90
225 226 5.847111 AGATGCCGTGTCTAATTACTACA 57.153 39.130 0.00 0.00 0.00 2.74
226 227 6.040878 ACAAGATGCCGTGTCTAATTACTAC 58.959 40.000 0.00 0.00 28.93 2.73
227 228 6.216801 ACAAGATGCCGTGTCTAATTACTA 57.783 37.500 0.00 0.00 28.93 1.82
228 229 5.086104 ACAAGATGCCGTGTCTAATTACT 57.914 39.130 0.00 0.00 28.93 2.24
229 230 5.796350 AACAAGATGCCGTGTCTAATTAC 57.204 39.130 0.00 0.00 33.95 1.89
230 231 7.908827 TTAAACAAGATGCCGTGTCTAATTA 57.091 32.000 0.00 0.00 33.95 1.40
231 232 6.811253 TTAAACAAGATGCCGTGTCTAATT 57.189 33.333 0.00 0.00 33.95 1.40
232 233 6.597672 TGATTAAACAAGATGCCGTGTCTAAT 59.402 34.615 0.00 0.00 32.99 1.73
233 234 5.935206 TGATTAAACAAGATGCCGTGTCTAA 59.065 36.000 0.00 0.00 33.95 2.10
234 235 5.483811 TGATTAAACAAGATGCCGTGTCTA 58.516 37.500 0.00 0.00 33.95 2.59
235 236 4.323417 TGATTAAACAAGATGCCGTGTCT 58.677 39.130 0.00 0.00 33.95 3.41
236 237 4.154195 ACTGATTAAACAAGATGCCGTGTC 59.846 41.667 0.00 0.00 33.95 3.67
237 238 4.072131 ACTGATTAAACAAGATGCCGTGT 58.928 39.130 0.00 0.00 36.57 4.49
238 239 4.685169 ACTGATTAAACAAGATGCCGTG 57.315 40.909 0.00 0.00 0.00 4.94
239 240 5.121768 GTGTACTGATTAAACAAGATGCCGT 59.878 40.000 0.00 0.00 0.00 5.68
240 241 5.121611 TGTGTACTGATTAAACAAGATGCCG 59.878 40.000 0.00 0.00 0.00 5.69
241 242 6.494893 TGTGTACTGATTAAACAAGATGCC 57.505 37.500 0.00 0.00 0.00 4.40
242 243 7.751732 TCATGTGTACTGATTAAACAAGATGC 58.248 34.615 0.00 0.00 31.24 3.91
243 244 9.712359 CATCATGTGTACTGATTAAACAAGATG 57.288 33.333 9.57 9.57 43.07 2.90
244 245 9.671279 TCATCATGTGTACTGATTAAACAAGAT 57.329 29.630 0.00 0.00 36.98 2.40
245 246 9.671279 ATCATCATGTGTACTGATTAAACAAGA 57.329 29.630 0.00 0.00 31.24 3.02
255 256 8.465201 GCTGAGATATATCATCATGTGTACTGA 58.535 37.037 15.08 0.00 0.00 3.41
256 257 7.431668 CGCTGAGATATATCATCATGTGTACTG 59.568 40.741 15.08 3.57 0.00 2.74
257 258 7.416101 CCGCTGAGATATATCATCATGTGTACT 60.416 40.741 15.08 0.00 0.00 2.73
258 259 6.694844 CCGCTGAGATATATCATCATGTGTAC 59.305 42.308 15.08 0.00 0.00 2.90
259 260 6.681368 GCCGCTGAGATATATCATCATGTGTA 60.681 42.308 15.08 0.00 0.00 2.90
260 261 5.658468 CCGCTGAGATATATCATCATGTGT 58.342 41.667 15.08 0.00 0.00 3.72
261 262 4.507021 GCCGCTGAGATATATCATCATGTG 59.493 45.833 15.08 13.08 0.00 3.21
262 263 4.691175 GCCGCTGAGATATATCATCATGT 58.309 43.478 15.08 0.00 0.00 3.21
263 264 3.734735 CGCCGCTGAGATATATCATCATG 59.265 47.826 15.08 10.01 0.00 3.07
264 265 3.798206 GCGCCGCTGAGATATATCATCAT 60.798 47.826 15.08 0.00 0.00 2.45
265 266 2.480244 GCGCCGCTGAGATATATCATCA 60.480 50.000 15.08 13.11 0.00 3.07
266 267 2.123342 GCGCCGCTGAGATATATCATC 58.877 52.381 15.08 9.64 0.00 2.92
267 268 1.202463 GGCGCCGCTGAGATATATCAT 60.202 52.381 12.58 0.33 0.00 2.45
268 269 0.173481 GGCGCCGCTGAGATATATCA 59.827 55.000 12.58 0.00 0.00 2.15
269 270 0.867753 CGGCGCCGCTGAGATATATC 60.868 60.000 38.48 4.42 37.02 1.63
270 271 1.139734 CGGCGCCGCTGAGATATAT 59.860 57.895 38.48 0.00 37.02 0.86
271 272 2.566529 CGGCGCCGCTGAGATATA 59.433 61.111 38.48 0.00 37.02 0.86
288 289 1.004560 TGTGGTCACTGCAGCTAGC 60.005 57.895 15.27 6.62 45.96 3.42
289 290 0.033920 TGTGTGGTCACTGCAGCTAG 59.966 55.000 15.27 4.15 44.14 3.42
290 291 0.249868 GTGTGTGGTCACTGCAGCTA 60.250 55.000 15.27 0.00 44.14 3.32
291 292 1.524621 GTGTGTGGTCACTGCAGCT 60.525 57.895 15.27 0.00 44.14 4.24
292 293 2.885676 CGTGTGTGGTCACTGCAGC 61.886 63.158 15.27 0.00 44.14 5.25
293 294 2.885676 GCGTGTGTGGTCACTGCAG 61.886 63.158 13.48 13.48 44.14 4.41
294 295 2.867793 AAGCGTGTGTGGTCACTGCA 62.868 55.000 14.42 0.00 43.53 4.41
295 296 0.878523 TAAGCGTGTGTGGTCACTGC 60.879 55.000 2.66 7.61 44.14 4.40
296 297 1.577468 TTAAGCGTGTGTGGTCACTG 58.423 50.000 2.66 0.00 44.14 3.66
297 298 2.543777 ATTAAGCGTGTGTGGTCACT 57.456 45.000 2.66 0.00 44.14 3.41
298 299 4.939509 ATAATTAAGCGTGTGTGGTCAC 57.060 40.909 0.00 0.00 44.08 3.67
299 300 4.155099 CCAATAATTAAGCGTGTGTGGTCA 59.845 41.667 0.00 0.00 0.00 4.02
300 301 4.658071 CCAATAATTAAGCGTGTGTGGTC 58.342 43.478 0.00 0.00 0.00 4.02
301 302 3.119637 GCCAATAATTAAGCGTGTGTGGT 60.120 43.478 0.00 0.00 0.00 4.16
302 303 3.128589 AGCCAATAATTAAGCGTGTGTGG 59.871 43.478 0.00 0.00 0.00 4.17
303 304 4.355543 AGCCAATAATTAAGCGTGTGTG 57.644 40.909 0.00 0.00 0.00 3.82
304 305 5.385509 AAAGCCAATAATTAAGCGTGTGT 57.614 34.783 0.00 0.00 0.00 3.72
305 306 6.551736 ACTAAAGCCAATAATTAAGCGTGTG 58.448 36.000 0.00 0.00 0.00 3.82
306 307 6.753107 ACTAAAGCCAATAATTAAGCGTGT 57.247 33.333 0.00 0.00 0.00 4.49
307 308 9.006215 GTTAACTAAAGCCAATAATTAAGCGTG 57.994 33.333 0.00 0.00 0.00 5.34
308 309 8.732531 TGTTAACTAAAGCCAATAATTAAGCGT 58.267 29.630 7.22 0.00 0.00 5.07
309 310 9.562583 TTGTTAACTAAAGCCAATAATTAAGCG 57.437 29.630 7.22 0.00 0.00 4.68
316 317 9.685828 GTGTCAATTGTTAACTAAAGCCAATAA 57.314 29.630 7.22 0.00 0.00 1.40
317 318 8.301002 GGTGTCAATTGTTAACTAAAGCCAATA 58.699 33.333 7.22 0.00 0.00 1.90
318 319 7.151976 GGTGTCAATTGTTAACTAAAGCCAAT 58.848 34.615 7.22 0.00 0.00 3.16
319 320 6.508777 GGTGTCAATTGTTAACTAAAGCCAA 58.491 36.000 7.22 0.00 0.00 4.52
320 321 5.278071 CGGTGTCAATTGTTAACTAAAGCCA 60.278 40.000 7.22 0.00 0.00 4.75
321 322 5.049267 TCGGTGTCAATTGTTAACTAAAGCC 60.049 40.000 7.22 0.00 0.00 4.35
322 323 5.992729 TCGGTGTCAATTGTTAACTAAAGC 58.007 37.500 7.22 0.00 0.00 3.51
323 324 7.360101 CCTCTCGGTGTCAATTGTTAACTAAAG 60.360 40.741 7.22 0.00 0.00 1.85
324 325 6.425721 CCTCTCGGTGTCAATTGTTAACTAAA 59.574 38.462 7.22 0.00 0.00 1.85
325 326 5.929992 CCTCTCGGTGTCAATTGTTAACTAA 59.070 40.000 7.22 0.27 0.00 2.24
326 327 5.475719 CCTCTCGGTGTCAATTGTTAACTA 58.524 41.667 7.22 0.00 0.00 2.24
327 328 4.315803 CCTCTCGGTGTCAATTGTTAACT 58.684 43.478 7.22 0.00 0.00 2.24
328 329 3.120304 GCCTCTCGGTGTCAATTGTTAAC 60.120 47.826 5.13 0.00 0.00 2.01
329 330 3.071479 GCCTCTCGGTGTCAATTGTTAA 58.929 45.455 5.13 0.00 0.00 2.01
330 331 2.301870 AGCCTCTCGGTGTCAATTGTTA 59.698 45.455 5.13 0.00 0.00 2.41
331 332 1.072331 AGCCTCTCGGTGTCAATTGTT 59.928 47.619 5.13 0.00 0.00 2.83
332 333 0.687354 AGCCTCTCGGTGTCAATTGT 59.313 50.000 5.13 0.00 0.00 2.71
333 334 1.081892 CAGCCTCTCGGTGTCAATTG 58.918 55.000 0.00 0.00 35.15 2.32
334 335 0.976641 TCAGCCTCTCGGTGTCAATT 59.023 50.000 0.00 0.00 40.98 2.32
335 336 0.534412 CTCAGCCTCTCGGTGTCAAT 59.466 55.000 0.00 0.00 40.98 2.57
336 337 0.827925 ACTCAGCCTCTCGGTGTCAA 60.828 55.000 0.00 0.00 40.98 3.18
337 338 0.037734 TACTCAGCCTCTCGGTGTCA 59.962 55.000 0.00 0.00 40.98 3.58
338 339 0.736053 CTACTCAGCCTCTCGGTGTC 59.264 60.000 0.00 0.00 40.98 3.67
339 340 0.328592 TCTACTCAGCCTCTCGGTGT 59.671 55.000 0.00 0.00 40.98 4.16
340 341 1.021202 CTCTACTCAGCCTCTCGGTG 58.979 60.000 0.00 0.00 41.57 4.94
341 342 0.106918 CCTCTACTCAGCCTCTCGGT 60.107 60.000 0.00 0.00 0.00 4.69
342 343 0.106918 ACCTCTACTCAGCCTCTCGG 60.107 60.000 0.00 0.00 0.00 4.63
343 344 1.757682 AACCTCTACTCAGCCTCTCG 58.242 55.000 0.00 0.00 0.00 4.04
344 345 3.382227 GGTAAACCTCTACTCAGCCTCTC 59.618 52.174 0.00 0.00 0.00 3.20
345 346 3.245658 TGGTAAACCTCTACTCAGCCTCT 60.246 47.826 0.02 0.00 36.82 3.69
346 347 3.097614 TGGTAAACCTCTACTCAGCCTC 58.902 50.000 0.02 0.00 36.82 4.70
347 348 3.185880 TGGTAAACCTCTACTCAGCCT 57.814 47.619 0.02 0.00 36.82 4.58
348 349 3.451178 TCATGGTAAACCTCTACTCAGCC 59.549 47.826 0.02 0.00 36.82 4.85
349 350 4.737855 TCATGGTAAACCTCTACTCAGC 57.262 45.455 0.02 0.00 36.82 4.26
350 351 6.758886 GTCATTCATGGTAAACCTCTACTCAG 59.241 42.308 0.02 0.00 36.82 3.35
351 352 6.212589 TGTCATTCATGGTAAACCTCTACTCA 59.787 38.462 0.02 0.00 36.82 3.41
352 353 6.640518 TGTCATTCATGGTAAACCTCTACTC 58.359 40.000 0.02 0.00 36.82 2.59
353 354 6.620877 TGTCATTCATGGTAAACCTCTACT 57.379 37.500 0.02 0.00 36.82 2.57
354 355 6.483640 GGATGTCATTCATGGTAAACCTCTAC 59.516 42.308 0.02 0.00 36.83 2.59
355 356 6.591935 GGATGTCATTCATGGTAAACCTCTA 58.408 40.000 0.02 0.00 36.83 2.43
356 357 5.440610 GGATGTCATTCATGGTAAACCTCT 58.559 41.667 0.02 0.00 36.83 3.69
357 358 4.273480 CGGATGTCATTCATGGTAAACCTC 59.727 45.833 0.02 0.00 36.83 3.85
358 359 4.199310 CGGATGTCATTCATGGTAAACCT 58.801 43.478 0.02 0.00 36.83 3.50
359 360 3.315191 CCGGATGTCATTCATGGTAAACC 59.685 47.826 0.00 0.00 36.83 3.27
360 361 3.945285 ACCGGATGTCATTCATGGTAAAC 59.055 43.478 9.46 0.00 36.83 2.01
361 362 4.229304 ACCGGATGTCATTCATGGTAAA 57.771 40.909 9.46 0.00 36.83 2.01
362 363 3.924114 ACCGGATGTCATTCATGGTAA 57.076 42.857 9.46 0.00 36.83 2.85
363 364 3.243602 CGTACCGGATGTCATTCATGGTA 60.244 47.826 9.46 0.00 35.41 3.25
364 365 2.483013 CGTACCGGATGTCATTCATGGT 60.483 50.000 9.46 0.00 36.92 3.55
365 366 2.135139 CGTACCGGATGTCATTCATGG 58.865 52.381 9.46 0.00 36.83 3.66
366 367 2.821546 ACGTACCGGATGTCATTCATG 58.178 47.619 9.46 0.00 36.83 3.07
367 368 3.549423 CGTACGTACCGGATGTCATTCAT 60.549 47.826 19.67 0.00 39.77 2.57
368 369 2.223317 CGTACGTACCGGATGTCATTCA 60.223 50.000 19.67 0.00 0.00 2.57
369 370 2.223340 ACGTACGTACCGGATGTCATTC 60.223 50.000 21.41 0.00 34.58 2.67
370 371 1.745087 ACGTACGTACCGGATGTCATT 59.255 47.619 21.41 0.00 34.58 2.57
371 372 1.382522 ACGTACGTACCGGATGTCAT 58.617 50.000 21.41 0.00 34.58 3.06
372 373 2.853159 ACGTACGTACCGGATGTCA 58.147 52.632 21.41 0.00 34.58 3.58
373 374 3.516263 GACGTACGTACCGGATGTC 57.484 57.895 22.87 15.74 46.95 3.06
374 375 1.705337 CGGACGTACGTACCGGATGT 61.705 60.000 32.86 11.17 43.10 3.06
375 376 1.010797 CGGACGTACGTACCGGATG 60.011 63.158 32.86 16.43 42.48 3.51
376 377 3.409856 CGGACGTACGTACCGGAT 58.590 61.111 32.86 10.83 42.48 4.18
389 390 1.799121 GCAACTCGGTCGTACGGAC 60.799 63.158 16.52 11.89 45.31 4.79
390 391 2.562912 GCAACTCGGTCGTACGGA 59.437 61.111 16.52 3.88 0.00 4.69
391 392 2.872925 CGCAACTCGGTCGTACGG 60.873 66.667 16.52 0.68 33.78 4.02
392 393 3.530104 GCGCAACTCGGTCGTACG 61.530 66.667 9.53 9.53 38.94 3.67
399 400 2.434185 TAGCCAAGCGCAACTCGG 60.434 61.111 11.47 2.88 41.38 4.63
400 401 1.291877 AAGTAGCCAAGCGCAACTCG 61.292 55.000 11.47 0.00 41.38 4.18
401 402 1.661112 CTAAGTAGCCAAGCGCAACTC 59.339 52.381 11.47 0.00 41.38 3.01
402 403 1.726853 CTAAGTAGCCAAGCGCAACT 58.273 50.000 11.47 3.15 41.38 3.16
403 404 0.097150 GCTAAGTAGCCAAGCGCAAC 59.903 55.000 11.47 0.00 43.39 4.17
404 405 2.466867 GCTAAGTAGCCAAGCGCAA 58.533 52.632 11.47 0.00 43.39 4.85
405 406 4.201951 GCTAAGTAGCCAAGCGCA 57.798 55.556 11.47 0.00 43.39 6.09
424 425 0.390340 CACGAGTGTCATCCAGGTGG 60.390 60.000 0.00 0.00 0.00 4.61
425 426 0.390340 CCACGAGTGTCATCCAGGTG 60.390 60.000 2.36 0.00 0.00 4.00
426 427 0.541998 TCCACGAGTGTCATCCAGGT 60.542 55.000 2.36 0.00 0.00 4.00
427 428 0.174389 CTCCACGAGTGTCATCCAGG 59.826 60.000 2.36 0.00 0.00 4.45
428 429 1.177401 TCTCCACGAGTGTCATCCAG 58.823 55.000 2.36 0.00 0.00 3.86
429 430 1.627864 TTCTCCACGAGTGTCATCCA 58.372 50.000 2.36 0.00 0.00 3.41
430 431 2.743636 TTTCTCCACGAGTGTCATCC 57.256 50.000 2.36 0.00 0.00 3.51
431 432 2.413453 GCTTTTCTCCACGAGTGTCATC 59.587 50.000 2.36 0.00 0.00 2.92
432 433 2.037772 AGCTTTTCTCCACGAGTGTCAT 59.962 45.455 2.36 0.00 0.00 3.06
433 434 1.412710 AGCTTTTCTCCACGAGTGTCA 59.587 47.619 2.36 0.00 0.00 3.58
434 435 2.156343 AGCTTTTCTCCACGAGTGTC 57.844 50.000 2.36 0.00 0.00 3.67
435 436 3.746045 TTAGCTTTTCTCCACGAGTGT 57.254 42.857 0.00 0.00 0.00 3.55
436 437 4.142816 CCATTTAGCTTTTCTCCACGAGTG 60.143 45.833 0.00 0.00 0.00 3.51
471 472 5.809001 AGTGTGCTCATTTCAGGAATTAGA 58.191 37.500 0.00 0.00 0.00 2.10
508 509 5.337813 GGTCTCAGGGTTTAATTTAGACCGA 60.338 44.000 9.37 2.96 41.37 4.69
695 704 0.617249 AGCAGAGAGGAAGACAGGGG 60.617 60.000 0.00 0.00 0.00 4.79
1189 1377 8.336235 ACCAATTCAGTCCTAGGAATATGAAAA 58.664 33.333 26.73 14.19 33.57 2.29
1202 1390 2.379907 ACCCATCAACCAATTCAGTCCT 59.620 45.455 0.00 0.00 0.00 3.85
1222 1410 3.820467 TGTCATCATCCAAGAACACCAAC 59.180 43.478 0.00 0.00 0.00 3.77
1468 1656 4.039245 ACAGCTGCTAACACTTCTTCACTA 59.961 41.667 15.27 0.00 0.00 2.74
1505 1997 4.875536 TGTGTGGCATATATTCAGTGTCAC 59.124 41.667 2.65 2.65 45.87 3.67
1588 2112 9.091784 GCTTTTTGTTTCTCTCATCTTTTTCTT 57.908 29.630 0.00 0.00 0.00 2.52
1589 2113 8.473219 AGCTTTTTGTTTCTCTCATCTTTTTCT 58.527 29.630 0.00 0.00 0.00 2.52
1590 2114 8.538039 CAGCTTTTTGTTTCTCTCATCTTTTTC 58.462 33.333 0.00 0.00 0.00 2.29
1591 2115 7.493645 CCAGCTTTTTGTTTCTCTCATCTTTTT 59.506 33.333 0.00 0.00 0.00 1.94
1592 2116 6.982724 CCAGCTTTTTGTTTCTCTCATCTTTT 59.017 34.615 0.00 0.00 0.00 2.27
1593 2117 6.322201 TCCAGCTTTTTGTTTCTCTCATCTTT 59.678 34.615 0.00 0.00 0.00 2.52
1594 2118 5.829924 TCCAGCTTTTTGTTTCTCTCATCTT 59.170 36.000 0.00 0.00 0.00 2.40
1595 2119 5.380043 TCCAGCTTTTTGTTTCTCTCATCT 58.620 37.500 0.00 0.00 0.00 2.90
1675 2199 3.117663 TCCTTCTCCTCTCCTTCTAGCTC 60.118 52.174 0.00 0.00 0.00 4.09
1713 2237 3.229293 TCACCATAGGAGCTCATCAGAG 58.771 50.000 17.19 1.03 44.96 3.35
1776 2308 9.897744 GAATTTCACTGTCATTGTTGAATCTAA 57.102 29.630 0.00 0.00 32.48 2.10
2110 2644 8.317679 ACTGTTGCTTTCATACTCTCTATCTTT 58.682 33.333 0.00 0.00 0.00 2.52
2452 2986 7.692460 TTGATTATTTGCATCCCTAGCTATG 57.308 36.000 0.00 0.00 0.00 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.