Multiple sequence alignment - TraesCS4A01G455900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G455900 chr4A 100.000 3515 0 0 1 3515 719177222 719180736 0.000000e+00 6492.0
1 TraesCS4A01G455900 chr4A 88.539 890 43 23 2416 3259 719205742 719206618 0.000000e+00 1024.0
2 TraesCS4A01G455900 chr4A 96.471 595 21 0 1830 2424 719204667 719205261 0.000000e+00 983.0
3 TraesCS4A01G455900 chr4A 80.491 774 74 28 2199 2928 719094459 719093719 4.020000e-144 521.0
4 TraesCS4A01G455900 chr4A 96.610 59 2 0 3283 3341 719206616 719206674 8.030000e-17 99.0
5 TraesCS4A01G455900 chr4A 88.235 68 2 2 3454 3515 719206698 719206765 3.760000e-10 76.8
6 TraesCS4A01G455900 chr7A 93.256 2313 96 17 1046 3309 56153820 56151519 0.000000e+00 3352.0
7 TraesCS4A01G455900 chr7A 92.613 2017 100 16 941 2928 5200310 5202306 0.000000e+00 2854.0
8 TraesCS4A01G455900 chr7A 94.856 1458 70 4 941 2396 5194481 5195935 0.000000e+00 2272.0
9 TraesCS4A01G455900 chr7A 92.255 581 27 7 2008 2577 14795804 14796377 0.000000e+00 808.0
10 TraesCS4A01G455900 chr7A 90.328 610 41 10 941 1548 5222578 5223171 0.000000e+00 784.0
11 TraesCS4A01G455900 chr7A 91.892 222 14 2 2517 2734 56117842 56117621 1.230000e-79 307.0
12 TraesCS4A01G455900 chr7A 79.274 468 51 22 2506 2928 5099484 5099018 5.740000e-73 285.0
13 TraesCS4A01G455900 chr7A 89.216 204 17 3 2730 2928 14796521 14796724 2.090000e-62 250.0
14 TraesCS4A01G455900 chr7A 92.486 173 8 3 774 945 431989274 431989106 3.510000e-60 243.0
15 TraesCS4A01G455900 chr7A 88.679 159 11 1 2731 2889 56117594 56117443 1.670000e-43 187.0
16 TraesCS4A01G455900 chr7A 94.872 117 3 2 2612 2728 14796376 14796489 2.790000e-41 180.0
17 TraesCS4A01G455900 chr7A 85.586 111 13 2 3394 3504 5207078 5207185 2.870000e-21 113.0
18 TraesCS4A01G455900 chr7A 95.122 41 2 0 139 179 5191996 5192036 8.140000e-07 65.8
19 TraesCS4A01G455900 chr3D 94.342 1944 90 10 941 2873 585084789 585086723 0.000000e+00 2963.0
20 TraesCS4A01G455900 chr7D 94.329 1922 80 9 1046 2938 15782542 15780621 0.000000e+00 2918.0
21 TraesCS4A01G455900 chr7D 92.557 309 23 0 3033 3341 15780572 15780264 8.950000e-121 444.0
22 TraesCS4A01G455900 chr7D 93.684 190 5 3 3333 3515 15780229 15780040 9.610000e-71 278.0
23 TraesCS4A01G455900 chr7D 93.373 166 8 1 774 939 459391926 459392088 3.510000e-60 243.0
24 TraesCS4A01G455900 chr7D 88.119 202 21 2 2730 2928 15860781 15860982 1.630000e-58 237.0
25 TraesCS4A01G455900 chr7D 94.118 51 2 1 2958 3008 15780619 15780570 3.760000e-10 76.8
26 TraesCS4A01G455900 chr3A 94.185 1479 85 1 1046 2524 725267977 725266500 0.000000e+00 2254.0
27 TraesCS4A01G455900 chr3B 94.266 1465 84 0 1060 2524 798166034 798164570 0.000000e+00 2241.0
28 TraesCS4A01G455900 chrUn 87.550 996 95 9 1218 2197 51176104 51175122 0.000000e+00 1125.0
29 TraesCS4A01G455900 chr2B 85.512 283 29 5 941 1222 452383708 452383437 5.740000e-73 285.0
30 TraesCS4A01G455900 chr2B 93.413 167 8 1 774 940 719520507 719520670 9.750000e-61 244.0
31 TraesCS4A01G455900 chr1B 91.713 181 12 1 774 954 476874905 476874728 7.530000e-62 248.0
32 TraesCS4A01G455900 chr4D 93.373 166 8 1 774 939 404108740 404108578 3.510000e-60 243.0
33 TraesCS4A01G455900 chr4B 91.525 177 11 2 774 950 551080077 551079905 1.260000e-59 241.0
34 TraesCS4A01G455900 chr1D 90.761 184 9 6 774 955 178466308 178466485 4.530000e-59 239.0
35 TraesCS4A01G455900 chr1A 91.525 177 10 3 774 950 452455249 452455078 4.530000e-59 239.0
36 TraesCS4A01G455900 chr1A 89.005 191 13 4 774 963 393948616 393948433 2.730000e-56 230.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G455900 chr4A 719177222 719180736 3514 False 6492.000000 6492 100.000000 1 3515 1 chr4A.!!$F1 3514
1 TraesCS4A01G455900 chr4A 719204667 719206765 2098 False 545.700000 1024 92.463750 1830 3515 4 chr4A.!!$F2 1685
2 TraesCS4A01G455900 chr4A 719093719 719094459 740 True 521.000000 521 80.491000 2199 2928 1 chr4A.!!$R1 729
3 TraesCS4A01G455900 chr7A 56151519 56153820 2301 True 3352.000000 3352 93.256000 1046 3309 1 chr7A.!!$R2 2263
4 TraesCS4A01G455900 chr7A 5200310 5202306 1996 False 2854.000000 2854 92.613000 941 2928 1 chr7A.!!$F1 1987
5 TraesCS4A01G455900 chr7A 5191996 5195935 3939 False 1168.900000 2272 94.989000 139 2396 2 chr7A.!!$F4 2257
6 TraesCS4A01G455900 chr7A 5222578 5223171 593 False 784.000000 784 90.328000 941 1548 1 chr7A.!!$F3 607
7 TraesCS4A01G455900 chr7A 14795804 14796724 920 False 412.666667 808 92.114333 2008 2928 3 chr7A.!!$F5 920
8 TraesCS4A01G455900 chr3D 585084789 585086723 1934 False 2963.000000 2963 94.342000 941 2873 1 chr3D.!!$F1 1932
9 TraesCS4A01G455900 chr7D 15780040 15782542 2502 True 929.200000 2918 93.672000 1046 3515 4 chr7D.!!$R1 2469
10 TraesCS4A01G455900 chr3A 725266500 725267977 1477 True 2254.000000 2254 94.185000 1046 2524 1 chr3A.!!$R1 1478
11 TraesCS4A01G455900 chr3B 798164570 798166034 1464 True 2241.000000 2241 94.266000 1060 2524 1 chr3B.!!$R1 1464
12 TraesCS4A01G455900 chrUn 51175122 51176104 982 True 1125.000000 1125 87.550000 1218 2197 1 chrUn.!!$R1 979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 2683 0.032416 CTCCCTCCCTCCGTTCCTAA 60.032 60.000 0.0 0.0 0.00 2.69 F
1057 2956 0.380378 ACATGACGTGTTTGGTGCAC 59.620 50.000 8.8 8.8 38.01 4.57 F
2241 4157 1.006102 CGACAGGAACGGTGAGCTT 60.006 57.895 0.0 0.0 36.51 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 4042 0.252239 GGTTGAGGCCCCATCCTTTT 60.252 55.0 7.1 0.0 36.38 2.27 R
2271 4191 0.835941 GCCTGTCCATGATCTCCTGT 59.164 55.0 0.0 0.0 0.00 4.00 R
3223 5745 0.033504 TCGGCAGTCAAGGACAGTTC 59.966 55.0 0.0 0.0 34.60 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.217017 CCGGCGAGGCAGTAGCTA 61.217 66.667 9.30 0.00 41.70 3.32
68 69 2.333225 CGGCGAGGCAGTAGCTAG 59.667 66.667 0.00 0.00 41.70 3.42
69 70 2.028337 GGCGAGGCAGTAGCTAGC 59.972 66.667 6.62 6.62 41.70 3.42
70 71 2.494530 GGCGAGGCAGTAGCTAGCT 61.495 63.158 23.12 23.12 41.70 3.32
71 72 1.173444 GGCGAGGCAGTAGCTAGCTA 61.173 60.000 20.67 20.67 41.70 3.32
72 73 0.885196 GCGAGGCAGTAGCTAGCTAT 59.115 55.000 26.59 11.06 41.70 2.97
73 74 1.271102 GCGAGGCAGTAGCTAGCTATT 59.729 52.381 26.59 20.14 41.70 1.73
74 75 2.669950 GCGAGGCAGTAGCTAGCTATTC 60.670 54.545 26.59 15.12 41.70 1.75
75 76 2.817258 CGAGGCAGTAGCTAGCTATTCT 59.183 50.000 26.59 17.11 41.70 2.40
76 77 4.004314 CGAGGCAGTAGCTAGCTATTCTA 58.996 47.826 26.59 3.63 41.70 2.10
77 78 4.638421 CGAGGCAGTAGCTAGCTATTCTAT 59.362 45.833 26.59 13.50 41.70 1.98
78 79 5.124776 CGAGGCAGTAGCTAGCTATTCTATT 59.875 44.000 26.59 11.64 41.70 1.73
79 80 6.524101 AGGCAGTAGCTAGCTATTCTATTC 57.476 41.667 26.59 12.30 41.70 1.75
80 81 6.252995 AGGCAGTAGCTAGCTATTCTATTCT 58.747 40.000 26.59 14.32 41.70 2.40
81 82 7.406916 AGGCAGTAGCTAGCTATTCTATTCTA 58.593 38.462 26.59 0.00 41.70 2.10
82 83 7.556275 AGGCAGTAGCTAGCTATTCTATTCTAG 59.444 40.741 26.59 9.66 41.70 2.43
83 84 7.201785 GGCAGTAGCTAGCTATTCTATTCTAGG 60.202 44.444 26.59 9.00 41.70 3.02
84 85 7.338449 GCAGTAGCTAGCTATTCTATTCTAGGT 59.662 40.741 26.59 0.00 41.18 3.08
85 86 8.673711 CAGTAGCTAGCTATTCTATTCTAGGTG 58.326 40.741 26.59 3.44 39.37 4.00
86 87 7.832187 AGTAGCTAGCTATTCTATTCTAGGTGG 59.168 40.741 26.59 0.00 39.37 4.61
87 88 5.955355 AGCTAGCTATTCTATTCTAGGTGGG 59.045 44.000 17.69 0.00 38.13 4.61
88 89 5.394773 GCTAGCTATTCTATTCTAGGTGGGC 60.395 48.000 7.70 0.00 31.61 5.36
89 90 3.511934 AGCTATTCTATTCTAGGTGGGCG 59.488 47.826 0.00 0.00 0.00 6.13
90 91 3.368531 GCTATTCTATTCTAGGTGGGCGG 60.369 52.174 0.00 0.00 0.00 6.13
91 92 1.420430 TTCTATTCTAGGTGGGCGGG 58.580 55.000 0.00 0.00 0.00 6.13
92 93 1.119574 TCTATTCTAGGTGGGCGGGC 61.120 60.000 0.00 0.00 0.00 6.13
93 94 2.436087 CTATTCTAGGTGGGCGGGCG 62.436 65.000 0.00 0.00 0.00 6.13
112 113 4.176752 GCGGGCGGATTTCCTCCT 62.177 66.667 5.64 0.00 42.47 3.69
113 114 2.203070 CGGGCGGATTTCCTCCTG 60.203 66.667 5.64 2.95 42.47 3.86
114 115 2.517166 GGGCGGATTTCCTCCTGC 60.517 66.667 5.64 0.00 42.47 4.85
115 116 2.592308 GGCGGATTTCCTCCTGCT 59.408 61.111 0.00 0.00 42.47 4.24
116 117 1.524849 GGCGGATTTCCTCCTGCTC 60.525 63.158 0.00 0.00 42.47 4.26
117 118 1.524482 GCGGATTTCCTCCTGCTCT 59.476 57.895 0.00 0.00 42.47 4.09
118 119 0.531753 GCGGATTTCCTCCTGCTCTC 60.532 60.000 0.00 0.00 42.47 3.20
119 120 0.105778 CGGATTTCCTCCTGCTCTCC 59.894 60.000 0.00 0.00 42.47 3.71
120 121 0.105778 GGATTTCCTCCTGCTCTCCG 59.894 60.000 0.00 0.00 41.29 4.63
121 122 0.105778 GATTTCCTCCTGCTCTCCGG 59.894 60.000 0.00 0.00 0.00 5.14
122 123 1.977293 ATTTCCTCCTGCTCTCCGGC 61.977 60.000 0.00 0.00 0.00 6.13
143 144 0.525029 GCGCGTGTTCCTACTCCTAC 60.525 60.000 8.43 0.00 0.00 3.18
182 183 4.039092 GGGGGCTCAAGCTGCTCA 62.039 66.667 1.00 0.00 41.70 4.26
183 184 2.438075 GGGGCTCAAGCTGCTCAG 60.438 66.667 1.00 3.24 41.70 3.35
184 185 2.667418 GGGCTCAAGCTGCTCAGA 59.333 61.111 1.00 3.48 41.70 3.27
195 216 1.413445 GCTGCTCAGAGTCAGATCCAT 59.587 52.381 20.03 0.00 32.26 3.41
199 220 1.693062 CTCAGAGTCAGATCCATGGGG 59.307 57.143 13.02 0.00 0.00 4.96
201 222 1.059006 AGAGTCAGATCCATGGGGGC 61.059 60.000 13.02 1.34 36.21 5.80
202 223 2.111878 GTCAGATCCATGGGGGCG 59.888 66.667 13.02 0.00 36.21 6.13
203 224 2.366837 TCAGATCCATGGGGGCGT 60.367 61.111 13.02 0.00 36.21 5.68
232 1889 1.801395 CGCGATGGTTGACCGAGTAAT 60.801 52.381 0.00 0.00 39.43 1.89
234 1891 1.593006 CGATGGTTGACCGAGTAATGC 59.407 52.381 0.00 0.00 39.43 3.56
237 1894 1.072489 TGGTTGACCGAGTAATGCCAA 59.928 47.619 0.00 0.00 39.43 4.52
244 1901 2.222027 CCGAGTAATGCCAAGGAATCC 58.778 52.381 0.00 0.00 0.00 3.01
247 1904 1.564348 AGTAATGCCAAGGAATCCCGT 59.436 47.619 0.00 0.00 37.58 5.28
248 1905 1.947456 GTAATGCCAAGGAATCCCGTC 59.053 52.381 0.00 0.00 37.58 4.79
252 1909 2.666098 CCAAGGAATCCCGTCCCGT 61.666 63.158 0.00 0.00 38.59 5.28
253 1910 1.153429 CAAGGAATCCCGTCCCGTC 60.153 63.158 0.00 0.00 38.59 4.79
254 1911 2.364780 AAGGAATCCCGTCCCGTCC 61.365 63.158 0.00 0.00 38.59 4.79
255 1912 3.078836 GGAATCCCGTCCCGTCCA 61.079 66.667 0.00 0.00 0.00 4.02
257 1914 2.038329 AATCCCGTCCCGTCCAGA 59.962 61.111 0.00 0.00 0.00 3.86
259 1916 0.105862 AATCCCGTCCCGTCCAGATA 60.106 55.000 0.00 0.00 0.00 1.98
261 1918 2.201022 CCCGTCCCGTCCAGATAGG 61.201 68.421 0.00 0.00 39.47 2.57
264 1921 1.742768 GTCCCGTCCAGATAGGCTG 59.257 63.158 0.00 0.00 44.49 4.85
277 1934 4.828296 GGCTGGATGGCTGGGTGG 62.828 72.222 0.00 0.00 38.32 4.61
288 2114 1.905512 CTGGGTGGCCCTGTACTAC 59.094 63.158 0.00 0.00 45.70 2.73
291 2117 1.117994 GGGTGGCCCTGTACTACTAC 58.882 60.000 0.00 0.00 41.34 2.73
301 2127 5.187381 GCCCTGTACTACTACTTCCTTTTCT 59.813 44.000 0.00 0.00 0.00 2.52
302 2128 6.627731 GCCCTGTACTACTACTTCCTTTTCTC 60.628 46.154 0.00 0.00 0.00 2.87
357 2183 3.069980 GCCGTCCGTCTCTGATGCT 62.070 63.158 0.00 0.00 0.00 3.79
359 2185 1.875813 CGTCCGTCTCTGATGCTGC 60.876 63.158 0.00 0.00 0.00 5.25
361 2187 0.390340 GTCCGTCTCTGATGCTGCAA 60.390 55.000 6.36 0.00 0.00 4.08
375 2201 2.556534 CTGCAAGCCAATTCTACTGC 57.443 50.000 0.00 0.00 0.00 4.40
381 2207 3.831715 AGCCAATTCTACTGCGTTTTC 57.168 42.857 0.00 0.00 0.00 2.29
393 2219 1.215014 GCGTTTTCTGCACTTTGGGC 61.215 55.000 0.00 0.00 0.00 5.36
396 2222 1.134848 GTTTTCTGCACTTTGGGCACA 60.135 47.619 0.00 0.00 36.11 4.57
397 2223 1.189752 TTTCTGCACTTTGGGCACAA 58.810 45.000 0.00 0.00 36.11 3.33
398 2224 0.459489 TTCTGCACTTTGGGCACAAC 59.541 50.000 0.00 0.00 36.06 3.32
399 2225 1.067916 CTGCACTTTGGGCACAACC 59.932 57.895 0.00 0.00 36.06 3.77
400 2226 1.674764 CTGCACTTTGGGCACAACCA 61.675 55.000 0.00 0.00 42.05 3.67
409 2235 1.064314 TGGGCACAACCAAACACTACT 60.064 47.619 0.00 0.00 42.05 2.57
414 2240 4.083484 GGCACAACCAAACACTACTATGTC 60.083 45.833 0.00 0.00 38.86 3.06
417 2243 3.994931 ACCAAACACTACTATGTCCCC 57.005 47.619 0.00 0.00 30.55 4.81
446 2272 5.058149 CTAGCACAGCATACTAGGATCTG 57.942 47.826 10.96 10.96 31.65 2.90
447 2273 3.303938 AGCACAGCATACTAGGATCTGT 58.696 45.455 11.95 11.95 38.40 3.41
449 2275 3.388308 CACAGCATACTAGGATCTGTGC 58.612 50.000 23.23 11.08 45.08 4.57
453 2279 3.573538 AGCATACTAGGATCTGTGCTCTG 59.426 47.826 0.00 0.00 38.43 3.35
463 2289 0.250209 CTGTGCTCTGCTGTCTTGGT 60.250 55.000 0.00 0.00 0.00 3.67
474 2300 1.905215 CTGTCTTGGTCTCATGGGACT 59.095 52.381 24.63 0.00 36.55 3.85
497 2323 3.637998 GCTGATTGCCCACATAATCTG 57.362 47.619 0.00 0.00 35.02 2.90
498 2324 3.216800 GCTGATTGCCCACATAATCTGA 58.783 45.455 0.00 0.00 35.51 3.27
499 2325 3.633525 GCTGATTGCCCACATAATCTGAA 59.366 43.478 0.00 0.00 35.51 3.02
500 2326 4.280174 GCTGATTGCCCACATAATCTGAAT 59.720 41.667 0.00 0.00 35.51 2.57
510 2336 8.015658 GCCCACATAATCTGAATAATTACGTTC 58.984 37.037 0.00 0.00 0.00 3.95
519 2345 4.393680 TGAATAATTACGTTCCAGCACACC 59.606 41.667 0.00 0.00 0.00 4.16
534 2429 2.086869 CACACCATCGCTGATTTCCTT 58.913 47.619 0.00 0.00 0.00 3.36
539 2434 1.945394 CATCGCTGATTTCCTTCCCAG 59.055 52.381 0.00 0.00 0.00 4.45
542 2437 1.387539 GCTGATTTCCTTCCCAGCTC 58.612 55.000 0.00 0.00 46.04 4.09
584 2479 2.989166 GGTTGAATTAGCTGCAACTTGC 59.011 45.455 17.21 6.82 45.29 4.01
585 2480 3.305608 GGTTGAATTAGCTGCAACTTGCT 60.306 43.478 14.78 3.49 45.31 3.91
586 2481 4.301628 GTTGAATTAGCTGCAACTTGCTT 58.698 39.130 14.78 0.00 45.31 3.91
587 2482 3.904571 TGAATTAGCTGCAACTTGCTTG 58.095 40.909 14.78 8.73 45.31 4.01
602 2497 5.965922 ACTTGCTTGCTTATGGGTTTAATC 58.034 37.500 0.00 0.00 0.00 1.75
620 2515 2.299993 TCTGTCATCTCAACCGCATC 57.700 50.000 0.00 0.00 0.00 3.91
621 2516 1.134699 TCTGTCATCTCAACCGCATCC 60.135 52.381 0.00 0.00 0.00 3.51
622 2517 0.460109 TGTCATCTCAACCGCATCCG 60.460 55.000 0.00 0.00 0.00 4.18
623 2518 1.521457 TCATCTCAACCGCATCCGC 60.521 57.895 0.00 0.00 0.00 5.54
624 2519 2.203070 ATCTCAACCGCATCCGCC 60.203 61.111 0.00 0.00 33.11 6.13
625 2520 3.757248 ATCTCAACCGCATCCGCCC 62.757 63.158 0.00 0.00 33.11 6.13
651 2546 3.244009 GGCAGAGCATTGCATCTACTCTA 60.244 47.826 11.91 0.00 45.86 2.43
652 2547 4.375272 GCAGAGCATTGCATCTACTCTAA 58.625 43.478 11.91 0.00 43.53 2.10
655 2550 6.347563 GCAGAGCATTGCATCTACTCTAATTC 60.348 42.308 11.91 0.00 43.53 2.17
663 2558 7.558161 TGCATCTACTCTAATTCACATTTGG 57.442 36.000 0.00 0.00 0.00 3.28
667 2562 8.616076 CATCTACTCTAATTCACATTTGGAACC 58.384 37.037 0.00 0.00 0.00 3.62
668 2563 7.918076 TCTACTCTAATTCACATTTGGAACCT 58.082 34.615 0.00 0.00 0.00 3.50
669 2564 8.041323 TCTACTCTAATTCACATTTGGAACCTC 58.959 37.037 0.00 0.00 0.00 3.85
670 2565 6.542821 ACTCTAATTCACATTTGGAACCTCA 58.457 36.000 0.00 0.00 0.00 3.86
672 2567 7.671398 ACTCTAATTCACATTTGGAACCTCATT 59.329 33.333 0.00 0.00 0.00 2.57
673 2568 8.055279 TCTAATTCACATTTGGAACCTCATTC 57.945 34.615 0.00 0.00 36.48 2.67
674 2569 6.669125 AATTCACATTTGGAACCTCATTCA 57.331 33.333 0.00 0.00 39.30 2.57
675 2570 6.862469 ATTCACATTTGGAACCTCATTCAT 57.138 33.333 0.00 0.00 39.30 2.57
677 2572 6.757897 TCACATTTGGAACCTCATTCATAC 57.242 37.500 0.00 0.00 39.30 2.39
679 2574 6.599244 TCACATTTGGAACCTCATTCATACTC 59.401 38.462 0.00 0.00 39.30 2.59
680 2575 5.586243 ACATTTGGAACCTCATTCATACTCG 59.414 40.000 0.00 0.00 39.30 4.18
681 2576 3.819564 TGGAACCTCATTCATACTCGG 57.180 47.619 0.00 0.00 39.30 4.63
683 2578 3.517901 TGGAACCTCATTCATACTCGGTT 59.482 43.478 0.00 0.00 39.30 4.44
684 2579 4.712829 TGGAACCTCATTCATACTCGGTTA 59.287 41.667 0.00 0.00 39.30 2.85
685 2580 5.365605 TGGAACCTCATTCATACTCGGTTAT 59.634 40.000 0.00 0.00 39.30 1.89
686 2581 6.126883 TGGAACCTCATTCATACTCGGTTATT 60.127 38.462 0.00 0.00 39.30 1.40
687 2582 7.070198 TGGAACCTCATTCATACTCGGTTATTA 59.930 37.037 0.00 0.00 39.30 0.98
688 2583 7.929785 GGAACCTCATTCATACTCGGTTATTAA 59.070 37.037 0.00 0.00 39.30 1.40
713 2608 4.081531 TGGCTGCTTTGGGATAAATTTCTG 60.082 41.667 0.00 0.00 0.00 3.02
724 2619 7.734942 TGGGATAAATTTCTGAAACTTTTGCT 58.265 30.769 4.73 0.00 0.00 3.91
726 2621 7.062255 GGGATAAATTTCTGAAACTTTTGCTCG 59.938 37.037 4.73 0.00 0.00 5.03
757 2652 5.049129 ACAATTGCTCAAGAGTCAAGCTTAC 60.049 40.000 5.05 0.00 36.96 2.34
765 2660 3.982127 GAGTCAAGCTTACTCTTTCGC 57.018 47.619 20.02 3.33 40.21 4.70
767 2662 2.300437 AGTCAAGCTTACTCTTTCGCCT 59.700 45.455 0.00 0.00 0.00 5.52
768 2663 3.510360 AGTCAAGCTTACTCTTTCGCCTA 59.490 43.478 0.00 0.00 0.00 3.93
769 2664 3.613299 GTCAAGCTTACTCTTTCGCCTAC 59.387 47.826 0.00 0.00 0.00 3.18
770 2665 3.510360 TCAAGCTTACTCTTTCGCCTACT 59.490 43.478 0.00 0.00 0.00 2.57
771 2666 3.786516 AGCTTACTCTTTCGCCTACTC 57.213 47.619 0.00 0.00 0.00 2.59
772 2667 2.427812 AGCTTACTCTTTCGCCTACTCC 59.572 50.000 0.00 0.00 0.00 3.85
773 2668 2.481622 GCTTACTCTTTCGCCTACTCCC 60.482 54.545 0.00 0.00 0.00 4.30
774 2669 2.822707 TACTCTTTCGCCTACTCCCT 57.177 50.000 0.00 0.00 0.00 4.20
775 2670 1.476477 ACTCTTTCGCCTACTCCCTC 58.524 55.000 0.00 0.00 0.00 4.30
776 2671 0.747852 CTCTTTCGCCTACTCCCTCC 59.252 60.000 0.00 0.00 0.00 4.30
777 2672 0.686769 TCTTTCGCCTACTCCCTCCC 60.687 60.000 0.00 0.00 0.00 4.30
778 2673 0.688087 CTTTCGCCTACTCCCTCCCT 60.688 60.000 0.00 0.00 0.00 4.20
779 2674 0.686769 TTTCGCCTACTCCCTCCCTC 60.687 60.000 0.00 0.00 0.00 4.30
780 2675 2.522193 CGCCTACTCCCTCCCTCC 60.522 72.222 0.00 0.00 0.00 4.30
781 2676 2.522193 GCCTACTCCCTCCCTCCG 60.522 72.222 0.00 0.00 0.00 4.63
782 2677 3.017139 CCTACTCCCTCCCTCCGT 58.983 66.667 0.00 0.00 0.00 4.69
783 2678 1.310373 CCTACTCCCTCCCTCCGTT 59.690 63.158 0.00 0.00 0.00 4.44
784 2679 0.756070 CCTACTCCCTCCCTCCGTTC 60.756 65.000 0.00 0.00 0.00 3.95
785 2680 0.756070 CTACTCCCTCCCTCCGTTCC 60.756 65.000 0.00 0.00 0.00 3.62
786 2681 1.219824 TACTCCCTCCCTCCGTTCCT 61.220 60.000 0.00 0.00 0.00 3.36
787 2682 1.219824 ACTCCCTCCCTCCGTTCCTA 61.220 60.000 0.00 0.00 0.00 2.94
788 2683 0.032416 CTCCCTCCCTCCGTTCCTAA 60.032 60.000 0.00 0.00 0.00 2.69
789 2684 0.414629 TCCCTCCCTCCGTTCCTAAA 59.585 55.000 0.00 0.00 0.00 1.85
790 2685 1.009183 TCCCTCCCTCCGTTCCTAAAT 59.991 52.381 0.00 0.00 0.00 1.40
791 2686 2.248160 TCCCTCCCTCCGTTCCTAAATA 59.752 50.000 0.00 0.00 0.00 1.40
792 2687 3.116473 TCCCTCCCTCCGTTCCTAAATAT 60.116 47.826 0.00 0.00 0.00 1.28
793 2688 3.651423 CCCTCCCTCCGTTCCTAAATATT 59.349 47.826 0.00 0.00 0.00 1.28
794 2689 4.104261 CCCTCCCTCCGTTCCTAAATATTT 59.896 45.833 5.89 5.89 0.00 1.40
795 2690 5.063880 CCTCCCTCCGTTCCTAAATATTTG 58.936 45.833 11.05 1.40 0.00 2.32
796 2691 5.397559 CCTCCCTCCGTTCCTAAATATTTGT 60.398 44.000 11.05 0.00 0.00 2.83
797 2692 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
798 2693 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
799 2694 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
800 2695 6.260271 CCCTCCGTTCCTAAATATTTGTCTTC 59.740 42.308 11.05 0.00 0.00 2.87
801 2696 7.048512 CCTCCGTTCCTAAATATTTGTCTTCT 58.951 38.462 11.05 0.00 0.00 2.85
802 2697 7.553044 CCTCCGTTCCTAAATATTTGTCTTCTT 59.447 37.037 11.05 0.00 0.00 2.52
803 2698 9.595823 CTCCGTTCCTAAATATTTGTCTTCTTA 57.404 33.333 11.05 0.00 0.00 2.10
804 2699 9.595823 TCCGTTCCTAAATATTTGTCTTCTTAG 57.404 33.333 11.05 0.00 0.00 2.18
805 2700 9.595823 CCGTTCCTAAATATTTGTCTTCTTAGA 57.404 33.333 11.05 0.00 0.00 2.10
818 2713 7.928307 TGTCTTCTTAGAGATTTCAAATGGG 57.072 36.000 0.00 0.00 0.00 4.00
819 2714 6.375455 TGTCTTCTTAGAGATTTCAAATGGGC 59.625 38.462 0.00 0.00 0.00 5.36
820 2715 6.601217 GTCTTCTTAGAGATTTCAAATGGGCT 59.399 38.462 0.00 0.00 0.00 5.19
821 2716 7.770897 GTCTTCTTAGAGATTTCAAATGGGCTA 59.229 37.037 0.00 0.00 0.00 3.93
822 2717 8.497745 TCTTCTTAGAGATTTCAAATGGGCTAT 58.502 33.333 0.00 0.00 0.00 2.97
823 2718 8.682936 TTCTTAGAGATTTCAAATGGGCTATC 57.317 34.615 0.00 0.00 0.00 2.08
824 2719 7.805163 TCTTAGAGATTTCAAATGGGCTATCA 58.195 34.615 0.00 0.00 0.00 2.15
825 2720 7.716998 TCTTAGAGATTTCAAATGGGCTATCAC 59.283 37.037 0.00 0.00 0.00 3.06
826 2721 5.759059 AGAGATTTCAAATGGGCTATCACA 58.241 37.500 0.00 0.00 0.00 3.58
827 2722 6.371278 AGAGATTTCAAATGGGCTATCACAT 58.629 36.000 0.00 0.00 0.00 3.21
828 2723 7.520798 AGAGATTTCAAATGGGCTATCACATA 58.479 34.615 0.00 0.00 0.00 2.29
829 2724 7.446625 AGAGATTTCAAATGGGCTATCACATAC 59.553 37.037 0.00 0.00 0.00 2.39
830 2725 5.749596 TTTCAAATGGGCTATCACATACG 57.250 39.130 0.00 0.00 0.00 3.06
831 2726 3.138304 TCAAATGGGCTATCACATACGC 58.862 45.455 0.00 0.00 0.00 4.42
832 2727 2.877786 CAAATGGGCTATCACATACGCA 59.122 45.455 0.00 0.00 0.00 5.24
833 2728 3.423539 AATGGGCTATCACATACGCAT 57.576 42.857 0.00 0.00 37.29 4.73
834 2729 2.168326 TGGGCTATCACATACGCATG 57.832 50.000 0.00 0.00 38.21 4.06
835 2730 1.416030 TGGGCTATCACATACGCATGT 59.584 47.619 0.00 0.00 46.58 3.21
836 2731 2.630580 TGGGCTATCACATACGCATGTA 59.369 45.455 0.00 0.00 43.73 2.29
837 2732 3.260632 TGGGCTATCACATACGCATGTAT 59.739 43.478 0.00 0.00 43.73 2.29
838 2733 4.464597 TGGGCTATCACATACGCATGTATA 59.535 41.667 0.00 0.51 43.73 1.47
839 2734 5.128663 TGGGCTATCACATACGCATGTATAT 59.871 40.000 0.00 1.40 43.73 0.86
840 2735 5.463392 GGGCTATCACATACGCATGTATATG 59.537 44.000 0.00 13.67 43.73 1.78
841 2736 5.463392 GGCTATCACATACGCATGTATATGG 59.537 44.000 17.45 2.18 43.73 2.74
842 2737 6.042777 GCTATCACATACGCATGTATATGGT 58.957 40.000 17.45 0.99 43.73 3.55
843 2738 7.200455 GCTATCACATACGCATGTATATGGTA 58.800 38.462 17.45 3.06 43.73 3.25
844 2739 7.704899 GCTATCACATACGCATGTATATGGTAA 59.295 37.037 17.45 7.29 43.73 2.85
845 2740 9.581099 CTATCACATACGCATGTATATGGTAAA 57.419 33.333 17.45 5.58 43.73 2.01
846 2741 7.646446 TCACATACGCATGTATATGGTAAAC 57.354 36.000 17.45 0.00 43.73 2.01
847 2742 7.210873 TCACATACGCATGTATATGGTAAACA 58.789 34.615 17.45 0.00 43.73 2.83
848 2743 7.875554 TCACATACGCATGTATATGGTAAACAT 59.124 33.333 17.45 0.00 43.73 2.71
849 2744 9.145865 CACATACGCATGTATATGGTAAACATA 57.854 33.333 17.45 0.00 43.73 2.29
850 2745 9.884636 ACATACGCATGTATATGGTAAACATAT 57.115 29.630 17.45 5.09 43.74 1.78
864 2759 9.920946 ATGGTAAACATATTTTAGAGTGTGGAT 57.079 29.630 0.00 0.00 38.26 3.41
865 2760 9.747898 TGGTAAACATATTTTAGAGTGTGGATT 57.252 29.630 0.00 0.00 0.00 3.01
877 2772 4.510038 AGTGTGGATTCACTCATTTTGC 57.490 40.909 5.55 0.00 44.07 3.68
878 2773 4.147321 AGTGTGGATTCACTCATTTTGCT 58.853 39.130 5.55 0.00 44.07 3.91
879 2774 4.217118 AGTGTGGATTCACTCATTTTGCTC 59.783 41.667 5.55 0.00 44.07 4.26
880 2775 3.507233 TGTGGATTCACTCATTTTGCTCC 59.493 43.478 5.55 0.00 43.94 4.70
881 2776 2.749076 TGGATTCACTCATTTTGCTCCG 59.251 45.455 0.00 0.00 0.00 4.63
882 2777 2.749621 GGATTCACTCATTTTGCTCCGT 59.250 45.455 0.00 0.00 0.00 4.69
883 2778 3.938963 GGATTCACTCATTTTGCTCCGTA 59.061 43.478 0.00 0.00 0.00 4.02
884 2779 4.576463 GGATTCACTCATTTTGCTCCGTAT 59.424 41.667 0.00 0.00 0.00 3.06
885 2780 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
886 2781 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
887 2782 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
888 2783 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
889 2784 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
890 2785 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
891 2786 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
892 2787 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
893 2788 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
894 2789 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
895 2790 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
896 2791 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
897 2792 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
898 2793 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
899 2794 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
900 2795 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
901 2796 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
902 2797 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
903 2798 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
904 2799 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
905 2800 7.758076 CCGTATGTAGTCACTTGTTGAAATCTA 59.242 37.037 0.00 0.00 35.39 1.98
906 2801 9.302345 CGTATGTAGTCACTTGTTGAAATCTAT 57.698 33.333 0.00 0.00 35.39 1.98
915 2810 9.140286 TCACTTGTTGAAATCTATAGAAAGACG 57.860 33.333 6.52 2.27 0.00 4.18
916 2811 9.140286 CACTTGTTGAAATCTATAGAAAGACGA 57.860 33.333 6.52 1.63 0.00 4.20
917 2812 9.706691 ACTTGTTGAAATCTATAGAAAGACGAA 57.293 29.630 6.52 0.00 0.00 3.85
920 2815 9.653287 TGTTGAAATCTATAGAAAGACGAATGT 57.347 29.630 6.52 0.00 0.00 2.71
928 2823 9.798994 TCTATAGAAAGACGAATGTTTAGGAAC 57.201 33.333 0.00 0.00 36.29 3.62
929 2824 5.840940 AGAAAGACGAATGTTTAGGAACG 57.159 39.130 0.00 0.00 38.65 3.95
930 2825 4.689345 AGAAAGACGAATGTTTAGGAACGG 59.311 41.667 0.00 0.00 38.65 4.44
931 2826 3.947910 AGACGAATGTTTAGGAACGGA 57.052 42.857 0.00 0.00 38.65 4.69
932 2827 3.846360 AGACGAATGTTTAGGAACGGAG 58.154 45.455 0.00 0.00 38.65 4.63
933 2828 2.928116 GACGAATGTTTAGGAACGGAGG 59.072 50.000 0.00 0.00 38.65 4.30
934 2829 2.277084 CGAATGTTTAGGAACGGAGGG 58.723 52.381 0.00 0.00 38.65 4.30
935 2830 2.093869 CGAATGTTTAGGAACGGAGGGA 60.094 50.000 0.00 0.00 38.65 4.20
936 2831 3.532542 GAATGTTTAGGAACGGAGGGAG 58.467 50.000 0.00 0.00 38.65 4.30
937 2832 2.019807 TGTTTAGGAACGGAGGGAGT 57.980 50.000 0.00 0.00 38.65 3.85
938 2833 3.173953 TGTTTAGGAACGGAGGGAGTA 57.826 47.619 0.00 0.00 38.65 2.59
939 2834 3.094572 TGTTTAGGAACGGAGGGAGTAG 58.905 50.000 0.00 0.00 38.65 2.57
1057 2956 0.380378 ACATGACGTGTTTGGTGCAC 59.620 50.000 8.80 8.80 38.01 4.57
1092 2992 3.204526 CAAGATGGCTCTCACCAGAATC 58.795 50.000 0.00 0.00 44.71 2.52
1257 3157 2.398554 CGGTTTCCATGACCCTGCG 61.399 63.158 0.00 0.00 33.49 5.18
1470 3370 2.044352 GGGATGGGTGTTTCCGGG 60.044 66.667 0.00 0.00 37.00 5.73
1779 3679 2.224378 TGAGCTCCTCAGTTTCTTGGTG 60.224 50.000 12.15 0.00 35.39 4.17
2127 4042 1.600636 CAAGGCCAAGAGCACGGAA 60.601 57.895 5.01 0.00 46.50 4.30
2241 4157 1.006102 CGACAGGAACGGTGAGCTT 60.006 57.895 0.00 0.00 36.51 3.74
2334 4254 1.671054 CCTCGCCATCAACAACGGT 60.671 57.895 0.00 0.00 0.00 4.83
2424 4833 2.363018 CTCGTCCAGGCCCAGAGA 60.363 66.667 0.00 0.00 0.00 3.10
2577 4999 2.284754 TGGTATCCTTTGTTGCTGCA 57.715 45.000 0.00 0.00 0.00 4.41
2630 5052 7.221259 AGCAACCGCCGTTTAATTTTTATTATC 59.779 33.333 0.00 0.00 39.83 1.75
2701 5133 4.229812 TCTCCAGTCTCCACTACTTCCATA 59.770 45.833 0.00 0.00 0.00 2.74
2889 5360 7.834068 TTTGTTGCTATCTCTTGTGTCTATC 57.166 36.000 0.00 0.00 0.00 2.08
2890 5361 5.907207 TGTTGCTATCTCTTGTGTCTATCC 58.093 41.667 0.00 0.00 0.00 2.59
3030 5548 8.648557 TCATATTTAGTTCAAAGATCAGACGG 57.351 34.615 0.00 0.00 0.00 4.79
3031 5549 8.258007 TCATATTTAGTTCAAAGATCAGACGGT 58.742 33.333 0.00 0.00 0.00 4.83
3072 5592 4.696479 ACTCTGTTTGACTGACTGGAAT 57.304 40.909 0.00 0.00 0.00 3.01
3098 5619 3.546271 GTCCAAGTTTTGTCGAACTTTGC 59.454 43.478 0.00 0.00 45.05 3.68
3130 5651 7.120579 ACTGGCTCATTTCGACAAAATATTACA 59.879 33.333 0.00 0.00 35.77 2.41
3157 5678 3.737559 ATAGCACCCAAGTTTCATCCA 57.262 42.857 0.00 0.00 0.00 3.41
3221 5743 4.592778 TGCTGGAGTGTATATATGCTGGAA 59.407 41.667 2.37 0.00 0.00 3.53
3223 5745 5.583854 GCTGGAGTGTATATATGCTGGAATG 59.416 44.000 2.37 0.00 0.00 2.67
3236 5758 2.485814 GCTGGAATGAACTGTCCTTGAC 59.514 50.000 0.00 0.00 34.77 3.18
3403 5968 1.527844 GAGGAGCCATGGTGCATCC 60.528 63.158 14.67 15.23 0.00 3.51
3485 6051 2.363306 TGTGGCCATGAAACTGAAGT 57.637 45.000 9.72 0.00 0.00 3.01
3491 6057 2.555757 GCCATGAAACTGAAGTTGCTCT 59.444 45.455 2.90 0.00 38.44 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.200887 CTAGCTACTGCCTCGCCGG 62.201 68.421 0.00 0.00 40.80 6.13
51 52 2.333225 CTAGCTACTGCCTCGCCG 59.667 66.667 0.00 0.00 40.80 6.46
52 53 1.173444 TAGCTAGCTACTGCCTCGCC 61.173 60.000 20.67 0.00 40.80 5.54
53 54 0.885196 ATAGCTAGCTACTGCCTCGC 59.115 55.000 26.41 0.00 40.80 5.03
54 55 2.817258 AGAATAGCTAGCTACTGCCTCG 59.183 50.000 26.41 0.00 40.80 4.63
55 56 6.377146 AGAATAGAATAGCTAGCTACTGCCTC 59.623 42.308 26.41 17.17 40.80 4.70
56 57 6.252995 AGAATAGAATAGCTAGCTACTGCCT 58.747 40.000 26.41 20.15 40.80 4.75
57 58 6.524101 AGAATAGAATAGCTAGCTACTGCC 57.476 41.667 26.41 14.78 40.80 4.85
58 59 7.338449 ACCTAGAATAGAATAGCTAGCTACTGC 59.662 40.741 26.41 17.37 42.77 4.40
59 60 8.673711 CACCTAGAATAGAATAGCTAGCTACTG 58.326 40.741 26.41 8.84 42.77 2.74
60 61 7.832187 CCACCTAGAATAGAATAGCTAGCTACT 59.168 40.741 26.41 20.76 42.77 2.57
61 62 7.067737 CCCACCTAGAATAGAATAGCTAGCTAC 59.932 44.444 26.41 14.79 42.77 3.58
62 63 7.120051 CCCACCTAGAATAGAATAGCTAGCTA 58.880 42.308 26.09 26.09 42.77 3.32
63 64 5.955355 CCCACCTAGAATAGAATAGCTAGCT 59.045 44.000 23.12 23.12 42.77 3.32
64 65 5.394773 GCCCACCTAGAATAGAATAGCTAGC 60.395 48.000 6.62 6.62 42.77 3.42
65 66 5.163602 CGCCCACCTAGAATAGAATAGCTAG 60.164 48.000 0.00 0.00 42.77 3.42
66 67 4.705507 CGCCCACCTAGAATAGAATAGCTA 59.294 45.833 0.00 0.00 42.77 3.32
67 68 3.511934 CGCCCACCTAGAATAGAATAGCT 59.488 47.826 0.00 0.00 42.77 3.32
68 69 3.368531 CCGCCCACCTAGAATAGAATAGC 60.369 52.174 0.00 0.00 42.77 2.97
69 70 3.195825 CCCGCCCACCTAGAATAGAATAG 59.804 52.174 0.00 0.00 42.77 1.73
70 71 3.170717 CCCGCCCACCTAGAATAGAATA 58.829 50.000 0.00 0.00 42.77 1.75
71 72 1.978580 CCCGCCCACCTAGAATAGAAT 59.021 52.381 0.00 0.00 42.77 2.40
72 73 1.420430 CCCGCCCACCTAGAATAGAA 58.580 55.000 0.00 0.00 42.77 2.10
73 74 1.119574 GCCCGCCCACCTAGAATAGA 61.120 60.000 0.00 0.00 42.77 1.98
74 75 1.371558 GCCCGCCCACCTAGAATAG 59.628 63.158 0.00 0.00 38.80 1.73
75 76 2.504274 CGCCCGCCCACCTAGAATA 61.504 63.158 0.00 0.00 0.00 1.75
76 77 3.861797 CGCCCGCCCACCTAGAAT 61.862 66.667 0.00 0.00 0.00 2.40
102 103 0.105778 CCGGAGAGCAGGAGGAAATC 59.894 60.000 0.00 0.00 0.00 2.17
103 104 1.977293 GCCGGAGAGCAGGAGGAAAT 61.977 60.000 5.05 0.00 0.00 2.17
104 105 2.660064 GCCGGAGAGCAGGAGGAAA 61.660 63.158 5.05 0.00 0.00 3.13
105 106 3.077556 GCCGGAGAGCAGGAGGAA 61.078 66.667 5.05 0.00 0.00 3.36
122 123 2.879462 GAGTAGGAACACGCGCCG 60.879 66.667 5.73 0.00 0.00 6.46
123 124 1.660560 TAGGAGTAGGAACACGCGCC 61.661 60.000 5.73 0.00 0.00 6.53
124 125 0.525029 GTAGGAGTAGGAACACGCGC 60.525 60.000 5.73 0.00 0.00 6.86
125 126 1.063764 GAGTAGGAGTAGGAACACGCG 59.936 57.143 3.53 3.53 0.00 6.01
126 127 1.404748 GGAGTAGGAGTAGGAACACGC 59.595 57.143 0.00 0.00 0.00 5.34
127 128 3.002038 AGGAGTAGGAGTAGGAACACG 57.998 52.381 0.00 0.00 0.00 4.49
128 129 5.114764 ACTAGGAGTAGGAGTAGGAACAC 57.885 47.826 0.00 0.00 0.00 3.32
129 130 4.165758 GGACTAGGAGTAGGAGTAGGAACA 59.834 50.000 0.00 0.00 0.00 3.18
130 131 4.413189 AGGACTAGGAGTAGGAGTAGGAAC 59.587 50.000 0.00 0.00 0.00 3.62
131 132 4.644010 AGGACTAGGAGTAGGAGTAGGAA 58.356 47.826 0.00 0.00 0.00 3.36
132 133 4.298951 AGGACTAGGAGTAGGAGTAGGA 57.701 50.000 0.00 0.00 0.00 2.94
133 134 5.750352 CTAGGACTAGGAGTAGGAGTAGG 57.250 52.174 0.00 0.00 0.00 3.18
172 173 2.542597 GATCTGACTCTGAGCAGCTTG 58.457 52.381 18.29 0.00 32.27 4.01
179 180 1.693062 CCCCATGGATCTGACTCTGAG 59.307 57.143 15.22 2.45 0.00 3.35
180 181 1.693726 CCCCCATGGATCTGACTCTGA 60.694 57.143 15.22 0.00 35.39 3.27
182 183 1.059006 GCCCCCATGGATCTGACTCT 61.059 60.000 15.22 0.00 35.39 3.24
183 184 1.453669 GCCCCCATGGATCTGACTC 59.546 63.158 15.22 0.00 35.39 3.36
184 185 2.446848 CGCCCCCATGGATCTGACT 61.447 63.158 15.22 0.00 35.39 3.41
211 1868 2.877360 TACTCGGTCAACCATCGCGC 62.877 60.000 0.00 0.00 35.14 6.86
217 1874 0.687920 TGGCATTACTCGGTCAACCA 59.312 50.000 0.00 0.00 35.14 3.67
218 1875 1.737793 CTTGGCATTACTCGGTCAACC 59.262 52.381 0.00 0.00 0.00 3.77
232 1889 2.674754 GGACGGGATTCCTTGGCA 59.325 61.111 2.01 0.00 32.24 4.92
247 1904 4.277552 CAGCCTATCTGGACGGGA 57.722 61.111 0.00 0.00 39.15 5.14
254 1911 0.036448 CCAGCCATCCAGCCTATCTG 59.964 60.000 0.00 0.00 42.49 2.90
255 1912 1.132554 CCCAGCCATCCAGCCTATCT 61.133 60.000 0.00 0.00 0.00 1.98
257 1914 1.386485 ACCCAGCCATCCAGCCTAT 60.386 57.895 0.00 0.00 0.00 2.57
259 1916 3.736224 CACCCAGCCATCCAGCCT 61.736 66.667 0.00 0.00 0.00 4.58
272 1929 1.117994 GTAGTAGTACAGGGCCACCC 58.882 60.000 6.18 0.00 45.90 4.61
273 1930 2.156102 AGTAGTAGTACAGGGCCACC 57.844 55.000 6.18 0.00 0.00 4.61
274 1931 2.429971 GGAAGTAGTAGTACAGGGCCAC 59.570 54.545 6.18 0.00 0.00 5.01
275 1932 2.313945 AGGAAGTAGTAGTACAGGGCCA 59.686 50.000 6.18 0.00 0.00 5.36
276 1933 3.029483 AGGAAGTAGTAGTACAGGGCC 57.971 52.381 10.33 0.00 0.00 5.80
277 1934 5.187381 AGAAAAGGAAGTAGTAGTACAGGGC 59.813 44.000 10.33 0.00 0.00 5.19
278 1935 6.664384 AGAGAAAAGGAAGTAGTAGTACAGGG 59.336 42.308 10.33 0.00 0.00 4.45
279 1936 7.706100 AGAGAAAAGGAAGTAGTAGTACAGG 57.294 40.000 10.33 0.00 0.00 4.00
281 1938 8.921205 ACAAAGAGAAAAGGAAGTAGTAGTACA 58.079 33.333 10.33 0.00 0.00 2.90
312 2138 3.871006 CCTGAGCGTAACTGATATGCAAA 59.129 43.478 11.08 0.00 46.98 3.68
314 2140 2.803133 GCCTGAGCGTAACTGATATGCA 60.803 50.000 11.08 0.00 46.98 3.96
315 2141 1.795286 GCCTGAGCGTAACTGATATGC 59.205 52.381 1.28 1.28 45.27 3.14
316 2142 2.408050 GGCCTGAGCGTAACTGATATG 58.592 52.381 0.00 0.00 41.24 1.78
317 2143 1.000163 CGGCCTGAGCGTAACTGATAT 60.000 52.381 0.00 0.00 41.24 1.63
318 2144 0.384309 CGGCCTGAGCGTAACTGATA 59.616 55.000 0.00 0.00 41.24 2.15
322 2148 2.261671 CACGGCCTGAGCGTAACT 59.738 61.111 0.00 0.00 41.24 2.24
341 2167 1.875813 GCAGCATCAGAGACGGACG 60.876 63.158 0.00 0.00 0.00 4.79
345 2171 1.703438 GGCTTGCAGCATCAGAGACG 61.703 60.000 0.00 0.00 44.75 4.18
346 2172 0.675837 TGGCTTGCAGCATCAGAGAC 60.676 55.000 0.00 0.00 44.75 3.36
347 2173 0.037160 TTGGCTTGCAGCATCAGAGA 59.963 50.000 0.00 0.00 44.75 3.10
348 2174 1.103803 ATTGGCTTGCAGCATCAGAG 58.896 50.000 0.00 0.00 44.75 3.35
349 2175 1.475280 GAATTGGCTTGCAGCATCAGA 59.525 47.619 0.00 0.00 44.75 3.27
350 2176 1.476891 AGAATTGGCTTGCAGCATCAG 59.523 47.619 0.00 0.00 44.75 2.90
351 2177 1.552578 AGAATTGGCTTGCAGCATCA 58.447 45.000 0.00 0.00 44.75 3.07
357 2183 0.804364 CGCAGTAGAATTGGCTTGCA 59.196 50.000 0.00 0.00 0.00 4.08
359 2185 3.559238 AAACGCAGTAGAATTGGCTTG 57.441 42.857 0.00 0.00 45.00 4.01
361 2187 3.189287 CAGAAAACGCAGTAGAATTGGCT 59.811 43.478 0.00 0.00 45.00 4.75
364 2190 3.908382 GTGCAGAAAACGCAGTAGAATTG 59.092 43.478 0.00 0.00 45.00 2.32
369 2195 3.291585 CAAAGTGCAGAAAACGCAGTAG 58.708 45.455 0.00 0.00 45.00 2.57
375 2201 0.102120 TGCCCAAAGTGCAGAAAACG 59.898 50.000 0.00 0.00 34.05 3.60
381 2207 1.067916 GGTTGTGCCCAAAGTGCAG 59.932 57.895 0.00 0.00 39.87 4.41
393 2219 4.454504 GGGACATAGTAGTGTTTGGTTGTG 59.545 45.833 0.00 0.00 31.16 3.33
396 2222 3.307199 CGGGGACATAGTAGTGTTTGGTT 60.307 47.826 0.00 0.00 31.16 3.67
397 2223 2.235402 CGGGGACATAGTAGTGTTTGGT 59.765 50.000 0.00 0.00 31.16 3.67
398 2224 2.498481 TCGGGGACATAGTAGTGTTTGG 59.502 50.000 0.00 0.00 31.16 3.28
399 2225 3.782046 CTCGGGGACATAGTAGTGTTTG 58.218 50.000 0.00 0.00 31.16 2.93
400 2226 2.167900 GCTCGGGGACATAGTAGTGTTT 59.832 50.000 0.00 0.00 31.16 2.83
401 2227 1.755380 GCTCGGGGACATAGTAGTGTT 59.245 52.381 0.00 0.00 31.16 3.32
402 2228 1.341679 TGCTCGGGGACATAGTAGTGT 60.342 52.381 0.00 0.00 34.39 3.55
405 2231 0.315568 GCTGCTCGGGGACATAGTAG 59.684 60.000 0.00 0.00 0.00 2.57
409 2235 1.464376 GCTAGCTGCTCGGGGACATA 61.464 60.000 4.91 0.00 38.95 2.29
414 2240 3.729965 CTGTGCTAGCTGCTCGGGG 62.730 68.421 17.23 0.00 43.37 5.73
430 2256 3.573538 AGAGCACAGATCCTAGTATGCTG 59.426 47.826 0.52 0.00 43.20 4.41
432 2258 3.860378 GCAGAGCACAGATCCTAGTATGC 60.860 52.174 0.00 0.00 0.00 3.14
433 2259 3.573538 AGCAGAGCACAGATCCTAGTATG 59.426 47.826 0.00 0.00 0.00 2.39
435 2261 2.954989 CAGCAGAGCACAGATCCTAGTA 59.045 50.000 0.00 0.00 0.00 1.82
436 2262 1.755959 CAGCAGAGCACAGATCCTAGT 59.244 52.381 0.00 0.00 0.00 2.57
437 2263 1.755959 ACAGCAGAGCACAGATCCTAG 59.244 52.381 0.00 0.00 0.00 3.02
438 2264 1.753649 GACAGCAGAGCACAGATCCTA 59.246 52.381 0.00 0.00 0.00 2.94
439 2265 0.536260 GACAGCAGAGCACAGATCCT 59.464 55.000 0.00 0.00 0.00 3.24
440 2266 0.536260 AGACAGCAGAGCACAGATCC 59.464 55.000 0.00 0.00 0.00 3.36
441 2267 2.001159 CAAGACAGCAGAGCACAGATC 58.999 52.381 0.00 0.00 0.00 2.75
442 2268 1.338864 CCAAGACAGCAGAGCACAGAT 60.339 52.381 0.00 0.00 0.00 2.90
443 2269 0.034476 CCAAGACAGCAGAGCACAGA 59.966 55.000 0.00 0.00 0.00 3.41
444 2270 0.250209 ACCAAGACAGCAGAGCACAG 60.250 55.000 0.00 0.00 0.00 3.66
445 2271 0.250038 GACCAAGACAGCAGAGCACA 60.250 55.000 0.00 0.00 0.00 4.57
446 2272 0.034616 AGACCAAGACAGCAGAGCAC 59.965 55.000 0.00 0.00 0.00 4.40
447 2273 0.319728 GAGACCAAGACAGCAGAGCA 59.680 55.000 0.00 0.00 0.00 4.26
448 2274 0.319728 TGAGACCAAGACAGCAGAGC 59.680 55.000 0.00 0.00 0.00 4.09
449 2275 2.619147 CATGAGACCAAGACAGCAGAG 58.381 52.381 0.00 0.00 0.00 3.35
453 2279 0.615331 TCCCATGAGACCAAGACAGC 59.385 55.000 0.00 0.00 0.00 4.40
463 2289 1.588239 ATCAGCCAAGTCCCATGAGA 58.412 50.000 0.00 0.00 0.00 3.27
488 2314 8.774586 GCTGGAACGTAATTATTCAGATTATGT 58.225 33.333 0.00 0.00 39.60 2.29
489 2315 8.773645 TGCTGGAACGTAATTATTCAGATTATG 58.226 33.333 0.00 0.00 33.97 1.90
490 2316 8.774586 GTGCTGGAACGTAATTATTCAGATTAT 58.225 33.333 0.00 0.00 0.00 1.28
491 2317 7.766738 TGTGCTGGAACGTAATTATTCAGATTA 59.233 33.333 0.00 0.00 0.00 1.75
493 2319 6.037172 GTGTGCTGGAACGTAATTATTCAGAT 59.963 38.462 0.00 0.00 0.00 2.90
494 2320 5.350365 GTGTGCTGGAACGTAATTATTCAGA 59.650 40.000 0.00 0.00 0.00 3.27
495 2321 5.447279 GGTGTGCTGGAACGTAATTATTCAG 60.447 44.000 0.00 0.00 0.00 3.02
496 2322 4.393680 GGTGTGCTGGAACGTAATTATTCA 59.606 41.667 0.00 0.00 0.00 2.57
497 2323 4.393680 TGGTGTGCTGGAACGTAATTATTC 59.606 41.667 0.00 0.00 0.00 1.75
498 2324 4.328536 TGGTGTGCTGGAACGTAATTATT 58.671 39.130 0.00 0.00 0.00 1.40
499 2325 3.945346 TGGTGTGCTGGAACGTAATTAT 58.055 40.909 0.00 0.00 0.00 1.28
500 2326 3.404224 TGGTGTGCTGGAACGTAATTA 57.596 42.857 0.00 0.00 0.00 1.40
519 2345 1.945394 CTGGGAAGGAAATCAGCGATG 59.055 52.381 0.00 0.00 0.00 3.84
526 2352 3.802866 CAGTAGAGCTGGGAAGGAAATC 58.197 50.000 0.00 0.00 41.42 2.17
527 2353 2.092699 GCAGTAGAGCTGGGAAGGAAAT 60.093 50.000 0.00 0.00 45.14 2.17
555 2450 3.120792 CAGCTAATTCAACCATGCATGC 58.879 45.455 21.69 11.82 0.00 4.06
556 2451 3.120792 GCAGCTAATTCAACCATGCATG 58.879 45.455 20.19 20.19 32.58 4.06
557 2452 2.761767 TGCAGCTAATTCAACCATGCAT 59.238 40.909 0.00 0.00 37.28 3.96
558 2453 2.169330 TGCAGCTAATTCAACCATGCA 58.831 42.857 0.00 0.00 39.67 3.96
559 2454 2.925563 GTTGCAGCTAATTCAACCATGC 59.074 45.455 0.00 0.00 35.36 4.06
560 2455 4.445452 AGTTGCAGCTAATTCAACCATG 57.555 40.909 0.00 0.00 40.51 3.66
584 2479 6.757897 TGACAGATTAAACCCATAAGCAAG 57.242 37.500 0.00 0.00 0.00 4.01
585 2480 7.118723 AGATGACAGATTAAACCCATAAGCAA 58.881 34.615 0.00 0.00 0.00 3.91
586 2481 6.662755 AGATGACAGATTAAACCCATAAGCA 58.337 36.000 0.00 0.00 0.00 3.91
587 2482 6.767902 TGAGATGACAGATTAAACCCATAAGC 59.232 38.462 0.00 0.00 0.00 3.09
588 2483 8.616076 GTTGAGATGACAGATTAAACCCATAAG 58.384 37.037 0.00 0.00 0.00 1.73
602 2497 1.293924 GGATGCGGTTGAGATGACAG 58.706 55.000 0.00 0.00 0.00 3.51
629 2524 1.872313 GAGTAGATGCAATGCTCTGCC 59.128 52.381 6.82 3.14 41.90 4.85
630 2525 2.836262 AGAGTAGATGCAATGCTCTGC 58.164 47.619 18.04 10.23 42.95 4.26
632 2527 6.705381 GTGAATTAGAGTAGATGCAATGCTCT 59.295 38.462 21.01 21.01 39.52 4.09
633 2528 6.481313 TGTGAATTAGAGTAGATGCAATGCTC 59.519 38.462 6.82 11.02 0.00 4.26
634 2529 6.351711 TGTGAATTAGAGTAGATGCAATGCT 58.648 36.000 6.82 0.00 0.00 3.79
635 2530 6.609237 TGTGAATTAGAGTAGATGCAATGC 57.391 37.500 0.00 0.00 0.00 3.56
636 2531 9.447040 CAAATGTGAATTAGAGTAGATGCAATG 57.553 33.333 0.00 0.00 0.00 2.82
637 2532 8.627403 CCAAATGTGAATTAGAGTAGATGCAAT 58.373 33.333 0.00 0.00 0.00 3.56
639 2534 7.337938 TCCAAATGTGAATTAGAGTAGATGCA 58.662 34.615 0.00 0.00 0.00 3.96
651 2546 6.669125 TGAATGAGGTTCCAAATGTGAATT 57.331 33.333 0.00 0.00 35.91 2.17
652 2547 6.862469 ATGAATGAGGTTCCAAATGTGAAT 57.138 33.333 0.00 0.00 35.91 2.57
655 2550 6.457392 CGAGTATGAATGAGGTTCCAAATGTG 60.457 42.308 0.00 0.00 35.91 3.21
663 2558 8.882415 TTAATAACCGAGTATGAATGAGGTTC 57.118 34.615 0.61 0.00 41.55 3.62
667 2562 8.230486 GCCAATTAATAACCGAGTATGAATGAG 58.770 37.037 0.00 0.00 0.00 2.90
668 2563 7.936847 AGCCAATTAATAACCGAGTATGAATGA 59.063 33.333 0.00 0.00 0.00 2.57
669 2564 8.017373 CAGCCAATTAATAACCGAGTATGAATG 58.983 37.037 0.00 0.00 0.00 2.67
670 2565 7.308589 GCAGCCAATTAATAACCGAGTATGAAT 60.309 37.037 0.00 0.00 0.00 2.57
672 2567 5.468746 GCAGCCAATTAATAACCGAGTATGA 59.531 40.000 0.00 0.00 0.00 2.15
673 2568 5.470098 AGCAGCCAATTAATAACCGAGTATG 59.530 40.000 0.00 0.00 0.00 2.39
674 2569 5.621193 AGCAGCCAATTAATAACCGAGTAT 58.379 37.500 0.00 0.00 0.00 2.12
675 2570 5.031066 AGCAGCCAATTAATAACCGAGTA 57.969 39.130 0.00 0.00 0.00 2.59
677 2572 4.900635 AAGCAGCCAATTAATAACCGAG 57.099 40.909 0.00 0.00 0.00 4.63
679 2574 4.111916 CCAAAGCAGCCAATTAATAACCG 58.888 43.478 0.00 0.00 0.00 4.44
680 2575 4.161377 TCCCAAAGCAGCCAATTAATAACC 59.839 41.667 0.00 0.00 0.00 2.85
681 2576 5.337578 TCCCAAAGCAGCCAATTAATAAC 57.662 39.130 0.00 0.00 0.00 1.89
683 2578 7.667575 TTTATCCCAAAGCAGCCAATTAATA 57.332 32.000 0.00 0.00 0.00 0.98
684 2579 6.558488 TTTATCCCAAAGCAGCCAATTAAT 57.442 33.333 0.00 0.00 0.00 1.40
685 2580 6.558488 ATTTATCCCAAAGCAGCCAATTAA 57.442 33.333 0.00 0.00 0.00 1.40
686 2581 6.558488 AATTTATCCCAAAGCAGCCAATTA 57.442 33.333 0.00 0.00 0.00 1.40
687 2582 5.440207 AATTTATCCCAAAGCAGCCAATT 57.560 34.783 0.00 0.00 0.00 2.32
688 2583 5.190330 AGAAATTTATCCCAAAGCAGCCAAT 59.810 36.000 0.00 0.00 0.00 3.16
749 2644 3.851098 AGTAGGCGAAAGAGTAAGCTTG 58.149 45.455 9.86 0.00 0.00 4.01
757 2652 0.747852 GGAGGGAGTAGGCGAAAGAG 59.252 60.000 0.00 0.00 0.00 2.85
765 2660 0.756070 GAACGGAGGGAGGGAGTAGG 60.756 65.000 0.00 0.00 0.00 3.18
767 2662 1.219824 AGGAACGGAGGGAGGGAGTA 61.220 60.000 0.00 0.00 0.00 2.59
768 2663 1.219824 TAGGAACGGAGGGAGGGAGT 61.220 60.000 0.00 0.00 0.00 3.85
769 2664 0.032416 TTAGGAACGGAGGGAGGGAG 60.032 60.000 0.00 0.00 0.00 4.30
770 2665 0.414629 TTTAGGAACGGAGGGAGGGA 59.585 55.000 0.00 0.00 0.00 4.20
771 2666 1.508256 ATTTAGGAACGGAGGGAGGG 58.492 55.000 0.00 0.00 0.00 4.30
772 2667 4.976540 AATATTTAGGAACGGAGGGAGG 57.023 45.455 0.00 0.00 0.00 4.30
773 2668 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
774 2669 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
775 2670 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
776 2671 7.048512 AGAAGACAAATATTTAGGAACGGAGG 58.951 38.462 0.00 0.00 0.00 4.30
777 2672 8.494016 AAGAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
778 2673 9.595823 CTAAGAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
779 2674 9.595823 TCTAAGAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
792 2687 8.796475 CCCATTTGAAATCTCTAAGAAGACAAA 58.204 33.333 0.00 0.00 32.63 2.83
793 2688 7.094205 GCCCATTTGAAATCTCTAAGAAGACAA 60.094 37.037 0.00 0.00 0.00 3.18
794 2689 6.375455 GCCCATTTGAAATCTCTAAGAAGACA 59.625 38.462 0.00 0.00 0.00 3.41
795 2690 6.601217 AGCCCATTTGAAATCTCTAAGAAGAC 59.399 38.462 0.00 0.00 0.00 3.01
796 2691 6.725364 AGCCCATTTGAAATCTCTAAGAAGA 58.275 36.000 0.00 0.00 0.00 2.87
797 2692 8.688747 ATAGCCCATTTGAAATCTCTAAGAAG 57.311 34.615 0.00 0.00 0.00 2.85
798 2693 8.274322 TGATAGCCCATTTGAAATCTCTAAGAA 58.726 33.333 0.00 0.00 0.00 2.52
799 2694 7.716998 GTGATAGCCCATTTGAAATCTCTAAGA 59.283 37.037 0.00 0.00 0.00 2.10
800 2695 7.500227 TGTGATAGCCCATTTGAAATCTCTAAG 59.500 37.037 0.00 0.00 0.00 2.18
801 2696 7.345691 TGTGATAGCCCATTTGAAATCTCTAA 58.654 34.615 0.00 0.00 0.00 2.10
802 2697 6.899089 TGTGATAGCCCATTTGAAATCTCTA 58.101 36.000 0.00 0.00 0.00 2.43
803 2698 5.759059 TGTGATAGCCCATTTGAAATCTCT 58.241 37.500 0.00 0.00 0.00 3.10
804 2699 6.645790 ATGTGATAGCCCATTTGAAATCTC 57.354 37.500 0.00 0.00 0.00 2.75
805 2700 6.205464 CGTATGTGATAGCCCATTTGAAATCT 59.795 38.462 0.00 0.00 0.00 2.40
806 2701 6.373779 CGTATGTGATAGCCCATTTGAAATC 58.626 40.000 0.00 0.00 0.00 2.17
807 2702 5.278463 GCGTATGTGATAGCCCATTTGAAAT 60.278 40.000 0.00 0.00 0.00 2.17
808 2703 4.036262 GCGTATGTGATAGCCCATTTGAAA 59.964 41.667 0.00 0.00 0.00 2.69
809 2704 3.563808 GCGTATGTGATAGCCCATTTGAA 59.436 43.478 0.00 0.00 0.00 2.69
810 2705 3.138304 GCGTATGTGATAGCCCATTTGA 58.862 45.455 0.00 0.00 0.00 2.69
811 2706 2.877786 TGCGTATGTGATAGCCCATTTG 59.122 45.455 0.00 0.00 0.00 2.32
812 2707 3.207265 TGCGTATGTGATAGCCCATTT 57.793 42.857 0.00 0.00 0.00 2.32
813 2708 2.928801 TGCGTATGTGATAGCCCATT 57.071 45.000 0.00 0.00 0.00 3.16
814 2709 2.038952 ACATGCGTATGTGATAGCCCAT 59.961 45.455 18.78 0.00 45.54 4.00
815 2710 1.416030 ACATGCGTATGTGATAGCCCA 59.584 47.619 18.78 0.00 45.54 5.36
816 2711 2.169832 ACATGCGTATGTGATAGCCC 57.830 50.000 18.78 0.00 45.54 5.19
817 2712 5.463392 CCATATACATGCGTATGTGATAGCC 59.537 44.000 26.72 0.00 45.31 3.93
818 2713 6.042777 ACCATATACATGCGTATGTGATAGC 58.957 40.000 26.72 0.00 45.31 2.97
819 2714 9.581099 TTTACCATATACATGCGTATGTGATAG 57.419 33.333 26.72 15.54 45.31 2.08
820 2715 9.361315 GTTTACCATATACATGCGTATGTGATA 57.639 33.333 26.72 18.95 45.31 2.15
821 2716 7.875554 TGTTTACCATATACATGCGTATGTGAT 59.124 33.333 26.72 17.20 45.31 3.06
822 2717 7.210873 TGTTTACCATATACATGCGTATGTGA 58.789 34.615 26.72 15.80 45.31 3.58
823 2718 7.414814 TGTTTACCATATACATGCGTATGTG 57.585 36.000 26.72 13.34 46.63 3.21
824 2719 9.884636 ATATGTTTACCATATACATGCGTATGT 57.115 29.630 22.72 22.72 43.47 2.29
838 2733 9.920946 ATCCACACTCTAAAATATGTTTACCAT 57.079 29.630 0.00 0.00 37.58 3.55
839 2734 9.747898 AATCCACACTCTAAAATATGTTTACCA 57.252 29.630 0.00 0.00 0.00 3.25
843 2738 9.520515 AGTGAATCCACACTCTAAAATATGTTT 57.479 29.630 0.00 0.00 46.36 2.83
857 2752 4.479619 GAGCAAAATGAGTGAATCCACAC 58.520 43.478 0.00 0.00 45.54 3.82
858 2753 3.507233 GGAGCAAAATGAGTGAATCCACA 59.493 43.478 0.00 0.00 45.54 4.17
859 2754 3.426695 CGGAGCAAAATGAGTGAATCCAC 60.427 47.826 0.00 0.00 43.50 4.02
860 2755 2.749076 CGGAGCAAAATGAGTGAATCCA 59.251 45.455 0.00 0.00 0.00 3.41
861 2756 2.749621 ACGGAGCAAAATGAGTGAATCC 59.250 45.455 0.00 0.00 0.00 3.01
862 2757 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
863 2758 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
864 2759 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
865 2760 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
866 2761 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
867 2762 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
868 2763 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
869 2764 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
870 2765 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
871 2766 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
872 2767 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
873 2768 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
874 2769 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
875 2770 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
876 2771 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
877 2772 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
878 2773 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
879 2774 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
880 2775 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
889 2784 9.140286 CGTCTTTCTATAGATTTCAACAAGTGA 57.860 33.333 2.58 0.00 0.00 3.41
890 2785 9.140286 TCGTCTTTCTATAGATTTCAACAAGTG 57.860 33.333 2.58 1.28 0.00 3.16
891 2786 9.706691 TTCGTCTTTCTATAGATTTCAACAAGT 57.293 29.630 2.58 0.00 0.00 3.16
894 2789 9.653287 ACATTCGTCTTTCTATAGATTTCAACA 57.347 29.630 2.58 0.00 0.00 3.33
902 2797 9.798994 GTTCCTAAACATTCGTCTTTCTATAGA 57.201 33.333 0.00 0.00 35.36 1.98
903 2798 8.744011 CGTTCCTAAACATTCGTCTTTCTATAG 58.256 37.037 0.00 0.00 34.93 1.31
904 2799 7.703621 CCGTTCCTAAACATTCGTCTTTCTATA 59.296 37.037 0.00 0.00 34.93 1.31
905 2800 6.534079 CCGTTCCTAAACATTCGTCTTTCTAT 59.466 38.462 0.00 0.00 34.93 1.98
906 2801 5.865552 CCGTTCCTAAACATTCGTCTTTCTA 59.134 40.000 0.00 0.00 34.93 2.10
907 2802 4.689345 CCGTTCCTAAACATTCGTCTTTCT 59.311 41.667 0.00 0.00 34.93 2.52
908 2803 4.687483 TCCGTTCCTAAACATTCGTCTTTC 59.313 41.667 0.00 0.00 34.93 2.62
909 2804 4.634199 TCCGTTCCTAAACATTCGTCTTT 58.366 39.130 0.00 0.00 34.93 2.52
910 2805 4.243270 CTCCGTTCCTAAACATTCGTCTT 58.757 43.478 0.00 0.00 34.93 3.01
911 2806 3.368116 CCTCCGTTCCTAAACATTCGTCT 60.368 47.826 0.00 0.00 34.93 4.18
912 2807 2.928116 CCTCCGTTCCTAAACATTCGTC 59.072 50.000 0.00 0.00 34.93 4.20
913 2808 2.354403 CCCTCCGTTCCTAAACATTCGT 60.354 50.000 0.00 0.00 34.93 3.85
914 2809 2.093869 TCCCTCCGTTCCTAAACATTCG 60.094 50.000 0.00 0.00 34.93 3.34
915 2810 3.055312 ACTCCCTCCGTTCCTAAACATTC 60.055 47.826 0.00 0.00 34.93 2.67
916 2811 2.910977 ACTCCCTCCGTTCCTAAACATT 59.089 45.455 0.00 0.00 34.93 2.71
917 2812 2.547990 ACTCCCTCCGTTCCTAAACAT 58.452 47.619 0.00 0.00 34.93 2.71
918 2813 2.019807 ACTCCCTCCGTTCCTAAACA 57.980 50.000 0.00 0.00 34.93 2.83
919 2814 3.095332 ACTACTCCCTCCGTTCCTAAAC 58.905 50.000 0.00 0.00 0.00 2.01
920 2815 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
921 2816 3.525199 ACTACTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
922 2817 3.118531 ACTACTACTCCCTCCGTTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
923 2818 1.921748 ACTACTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
924 2819 2.433662 ACTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
925 2820 3.350833 TGAACTACTACTCCCTCCGTTC 58.649 50.000 0.00 0.00 0.00 3.95
926 2821 3.446442 TGAACTACTACTCCCTCCGTT 57.554 47.619 0.00 0.00 0.00 4.44
927 2822 3.666345 ATGAACTACTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
928 2823 4.082679 GCATATGAACTACTACTCCCTCCG 60.083 50.000 6.97 0.00 0.00 4.63
929 2824 4.833380 TGCATATGAACTACTACTCCCTCC 59.167 45.833 6.97 0.00 0.00 4.30
930 2825 6.209589 TGATGCATATGAACTACTACTCCCTC 59.790 42.308 6.97 0.00 0.00 4.30
931 2826 6.077993 TGATGCATATGAACTACTACTCCCT 58.922 40.000 6.97 0.00 0.00 4.20
932 2827 6.346477 TGATGCATATGAACTACTACTCCC 57.654 41.667 6.97 0.00 0.00 4.30
933 2828 7.606349 TGATGATGCATATGAACTACTACTCC 58.394 38.462 6.97 0.00 0.00 3.85
934 2829 9.650539 AATGATGATGCATATGAACTACTACTC 57.349 33.333 6.97 0.00 0.00 2.59
937 2832 9.783081 ACAAATGATGATGCATATGAACTACTA 57.217 29.630 6.97 0.00 0.00 1.82
938 2833 8.687292 ACAAATGATGATGCATATGAACTACT 57.313 30.769 6.97 0.00 0.00 2.57
939 2834 9.390795 GAACAAATGATGATGCATATGAACTAC 57.609 33.333 6.97 0.00 0.00 2.73
1012 2911 8.281212 ACAAAACAGAAGAGTGTCAAGTAATT 57.719 30.769 0.00 0.00 0.00 1.40
1013 2912 7.865706 ACAAAACAGAAGAGTGTCAAGTAAT 57.134 32.000 0.00 0.00 0.00 1.89
1014 2913 7.820386 TGTACAAAACAGAAGAGTGTCAAGTAA 59.180 33.333 0.00 0.00 33.01 2.24
1015 2914 7.324935 TGTACAAAACAGAAGAGTGTCAAGTA 58.675 34.615 0.00 0.00 33.01 2.24
1016 2915 6.170506 TGTACAAAACAGAAGAGTGTCAAGT 58.829 36.000 0.00 0.00 33.01 3.16
1057 2956 3.691609 GCCATCTTGTACCTGAAAAGAGG 59.308 47.826 0.00 0.00 39.28 3.69
1257 3157 2.996621 CTGAATGGAGTTGACGAAGGAC 59.003 50.000 0.00 0.00 0.00 3.85
2127 4042 0.252239 GGTTGAGGCCCCATCCTTTT 60.252 55.000 7.10 0.00 36.38 2.27
2241 4157 1.596934 GTCGATGAGGAGGTTGGCA 59.403 57.895 0.00 0.00 0.00 4.92
2271 4191 0.835941 GCCTGTCCATGATCTCCTGT 59.164 55.000 0.00 0.00 0.00 4.00
2424 4833 1.003718 GTGCGCCCCAAAGTAGTCT 60.004 57.895 4.18 0.00 0.00 3.24
2577 4999 4.713792 ACAGGAAAAGGACTCATGACTT 57.286 40.909 0.00 0.00 0.00 3.01
2630 5052 4.417426 AAATACAGGACCCATTACTCGG 57.583 45.455 0.00 0.00 0.00 4.63
2640 5062 9.110502 CTCCTTGTAGAAATTAAATACAGGACC 57.889 37.037 7.77 0.00 30.45 4.46
2822 5291 5.286082 CACAACAAACAAGTAACAAGCAGTC 59.714 40.000 0.00 0.00 0.00 3.51
2833 5302 6.095300 TGAGAATCATGACACAACAAACAAGT 59.905 34.615 0.00 0.00 42.56 3.16
2953 5443 3.499563 CCACCACCCCTTTCATGAACTTA 60.500 47.826 7.89 0.00 0.00 2.24
3029 5547 5.422650 AGTTTCTCTACCATAGGTCTGAACC 59.577 44.000 0.00 0.00 46.87 3.62
3030 5548 6.378848 AGAGTTTCTCTACCATAGGTCTGAAC 59.621 42.308 0.00 0.00 39.28 3.18
3031 5549 6.378564 CAGAGTTTCTCTACCATAGGTCTGAA 59.621 42.308 0.00 0.00 38.99 3.02
3072 5592 4.258543 AGTTCGACAAAACTTGGACTCAA 58.741 39.130 0.00 0.00 36.02 3.02
3098 5619 4.245660 TGTCGAAATGAGCCAGTTTAGAG 58.754 43.478 0.00 0.00 0.00 2.43
3130 5651 6.368779 TGAAACTTGGGTGCTATAACTACT 57.631 37.500 0.00 0.00 0.00 2.57
3221 5743 1.609061 CGGCAGTCAAGGACAGTTCAT 60.609 52.381 0.00 0.00 34.60 2.57
3223 5745 0.033504 TCGGCAGTCAAGGACAGTTC 59.966 55.000 0.00 0.00 34.60 3.01
3278 5800 3.281751 CTGTCTTTGCACGACGGCG 62.282 63.158 10.39 10.39 44.79 6.46
3281 5803 0.941463 AGAGCTGTCTTTGCACGACG 60.941 55.000 0.00 0.00 34.17 5.12
3384 5949 1.530771 GATGCACCATGGCTCCTCT 59.469 57.895 13.04 0.00 34.04 3.69
3403 5968 4.481112 GCGGTCAAATGCCTGCGG 62.481 66.667 0.00 0.00 0.00 5.69
3441 6006 2.237066 GCAAAATATTGGCGGCGGC 61.237 57.895 27.76 27.76 37.02 6.53
3442 6007 0.459237 TTGCAAAATATTGGCGGCGG 60.459 50.000 9.78 0.00 37.02 6.13
3444 6009 1.289276 CCTTGCAAAATATTGGCGGC 58.711 50.000 0.00 0.00 37.02 6.53
3445 6010 2.671130 ACCTTGCAAAATATTGGCGG 57.329 45.000 0.00 0.00 37.02 6.13
3485 6051 2.028839 CCAACAATGGCAATGAGAGCAA 60.029 45.455 10.01 0.00 40.58 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.