Multiple sequence alignment - TraesCS4A01G455300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G455300 chr4A 100.000 2843 0 0 1 2843 718938231 718935389 0.000000e+00 5251
1 TraesCS4A01G455300 chr4A 85.007 2181 261 34 1 2129 718422141 718424307 0.000000e+00 2156
2 TraesCS4A01G455300 chr4A 81.394 1392 237 13 721 2104 717259777 717258400 0.000000e+00 1116
3 TraesCS4A01G455300 chr4A 80.860 1395 239 18 721 2104 717753729 717755106 0.000000e+00 1072
4 TraesCS4A01G455300 chr7D 86.374 2165 244 34 1 2129 16384357 16382208 0.000000e+00 2316
5 TraesCS4A01G455300 chr7D 88.868 1563 163 8 574 2129 26391360 26389802 0.000000e+00 1912
6 TraesCS4A01G455300 chr7D 81.479 1393 234 15 721 2104 17122631 17124008 0.000000e+00 1122
7 TraesCS4A01G455300 chr7D 81.250 1392 239 13 721 2104 16759989 16758612 0.000000e+00 1105
8 TraesCS4A01G455300 chr7D 82.804 378 39 14 2133 2507 16382176 16381822 5.910000e-82 315
9 TraesCS4A01G455300 chr7A 86.347 2168 241 36 1 2129 15285536 15283385 0.000000e+00 2313
10 TraesCS4A01G455300 chr7A 83.245 376 38 13 2133 2506 15283353 15283001 3.530000e-84 322
11 TraesCS4A01G455300 chr7B 80.833 1393 243 15 721 2104 655811668 655813045 0.000000e+00 1072


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G455300 chr4A 718935389 718938231 2842 True 5251.0 5251 100.000 1 2843 1 chr4A.!!$R2 2842
1 TraesCS4A01G455300 chr4A 718422141 718424307 2166 False 2156.0 2156 85.007 1 2129 1 chr4A.!!$F2 2128
2 TraesCS4A01G455300 chr4A 717258400 717259777 1377 True 1116.0 1116 81.394 721 2104 1 chr4A.!!$R1 1383
3 TraesCS4A01G455300 chr4A 717753729 717755106 1377 False 1072.0 1072 80.860 721 2104 1 chr4A.!!$F1 1383
4 TraesCS4A01G455300 chr7D 26389802 26391360 1558 True 1912.0 1912 88.868 574 2129 1 chr7D.!!$R2 1555
5 TraesCS4A01G455300 chr7D 16381822 16384357 2535 True 1315.5 2316 84.589 1 2507 2 chr7D.!!$R3 2506
6 TraesCS4A01G455300 chr7D 17122631 17124008 1377 False 1122.0 1122 81.479 721 2104 1 chr7D.!!$F1 1383
7 TraesCS4A01G455300 chr7D 16758612 16759989 1377 True 1105.0 1105 81.250 721 2104 1 chr7D.!!$R1 1383
8 TraesCS4A01G455300 chr7A 15283001 15285536 2535 True 1317.5 2313 84.796 1 2506 2 chr7A.!!$R1 2505
9 TraesCS4A01G455300 chr7B 655811668 655813045 1377 False 1072.0 1072 80.833 721 2104 1 chr7B.!!$F1 1383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 585 0.110688 CCACATTTGTGTCGCGTCAG 60.111 55.0 6.22 0.0 44.21 3.51 F
1057 1119 0.027194 CATGTCAAAGCTCCGCATCG 59.973 55.0 0.00 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1813 0.307760 GTCTTCACAAGCCACCAACG 59.692 55.0 0.0 0.0 0.00 4.10 R
2751 2848 0.036306 GGTCGGTCACCAGGAATTGT 59.964 55.0 0.0 0.0 45.98 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.936547 GCTCTTTCCTAACATGGCTCG 59.063 52.381 0.00 0.00 0.00 5.03
48 49 2.851263 ACATGGCTCGTTTAAGGTCA 57.149 45.000 0.00 0.00 0.00 4.02
53 54 3.071479 TGGCTCGTTTAAGGTCAATCAC 58.929 45.455 0.00 0.00 0.00 3.06
68 69 9.847224 AAGGTCAATCACTTTTCTTAGTTCTAA 57.153 29.630 0.00 0.00 0.00 2.10
92 93 3.490439 TTGTTCACCTCAGATGAGCAA 57.510 42.857 0.00 0.00 42.68 3.91
93 94 3.708403 TGTTCACCTCAGATGAGCAAT 57.292 42.857 4.23 0.00 40.75 3.56
128 129 6.551736 TGAAAGCAAGAAAAGTCAGTACAAC 58.448 36.000 0.00 0.00 0.00 3.32
148 149 4.016113 ACTTCGACAAGTTTGACAAAGC 57.984 40.909 0.00 0.00 40.16 3.51
149 150 3.689649 ACTTCGACAAGTTTGACAAAGCT 59.310 39.130 0.00 0.00 40.16 3.74
160 161 7.817418 AGTTTGACAAAGCTTACCTTCATAA 57.183 32.000 0.00 0.00 31.99 1.90
162 163 8.860088 AGTTTGACAAAGCTTACCTTCATAATT 58.140 29.630 0.00 0.00 31.99 1.40
163 164 9.476202 GTTTGACAAAGCTTACCTTCATAATTT 57.524 29.630 0.00 0.00 31.99 1.82
194 196 0.798776 CACAGACAAACCCGCTCATC 59.201 55.000 0.00 0.00 0.00 2.92
196 198 1.899814 ACAGACAAACCCGCTCATCTA 59.100 47.619 0.00 0.00 0.00 1.98
197 199 2.501723 ACAGACAAACCCGCTCATCTAT 59.498 45.455 0.00 0.00 0.00 1.98
200 202 0.947244 CAAACCCGCTCATCTATGCC 59.053 55.000 0.00 0.00 0.00 4.40
202 204 1.686325 AACCCGCTCATCTATGCCGT 61.686 55.000 0.00 0.00 0.00 5.68
206 208 1.660355 GCTCATCTATGCCGTCCGA 59.340 57.895 0.00 0.00 0.00 4.55
207 209 0.387878 GCTCATCTATGCCGTCCGAG 60.388 60.000 0.00 0.00 0.00 4.63
209 211 1.106944 TCATCTATGCCGTCCGAGCA 61.107 55.000 5.55 5.55 45.94 4.26
217 219 2.549282 CGTCCGAGCAAAACCACG 59.451 61.111 0.00 0.00 0.00 4.94
224 226 4.264638 GCAAAACCACGCACGGCT 62.265 61.111 0.00 0.00 0.00 5.52
247 249 3.541632 ACCGGTGGATGATAATTGTGAC 58.458 45.455 6.12 0.00 0.00 3.67
257 259 7.118245 TGGATGATAATTGTGACGATAGCATTC 59.882 37.037 0.00 0.00 42.67 2.67
266 268 3.132111 TGACGATAGCATTCAGGCAACTA 59.868 43.478 0.00 0.00 45.67 2.24
267 269 3.458189 ACGATAGCATTCAGGCAACTAC 58.542 45.455 0.00 0.00 45.67 2.73
282 284 2.361483 TACGCGGACCAGTAGGCA 60.361 61.111 12.47 0.00 39.06 4.75
300 302 1.144503 GCATGGTCCCATCCAGATCTT 59.855 52.381 0.00 0.00 41.05 2.40
309 311 2.292569 CCATCCAGATCTTGAATTGCCG 59.707 50.000 0.00 0.00 0.00 5.69
310 312 1.382522 TCCAGATCTTGAATTGCCGC 58.617 50.000 0.00 0.00 0.00 6.53
311 313 1.097232 CCAGATCTTGAATTGCCGCA 58.903 50.000 0.00 0.00 0.00 5.69
337 339 1.049289 GGGTGCTCGGTTCCCTCTAT 61.049 60.000 0.00 0.00 38.29 1.98
340 342 2.231721 GGTGCTCGGTTCCCTCTATATC 59.768 54.545 0.00 0.00 0.00 1.63
363 365 1.275291 GAGCCCAAGGTTTTTAAGGCC 59.725 52.381 0.00 0.00 41.42 5.19
370 372 2.797786 AGGTTTTTAAGGCCGCATACA 58.202 42.857 0.00 0.00 0.00 2.29
373 375 1.827681 TTTTAAGGCCGCATACAGCA 58.172 45.000 0.00 0.00 46.13 4.41
381 383 0.316442 CCGCATACAGCAATCAAGCG 60.316 55.000 0.00 0.00 46.13 4.68
382 384 0.374758 CGCATACAGCAATCAAGCGT 59.625 50.000 0.00 0.00 46.13 5.07
391 393 1.468054 GCAATCAAGCGTTGCCTAAGG 60.468 52.381 7.60 0.00 44.65 2.69
408 410 2.586648 AGGCCAACAAAAGACTAGGG 57.413 50.000 5.01 0.00 0.00 3.53
417 419 0.326264 AAAGACTAGGGTGCTGCCAG 59.674 55.000 0.00 0.00 39.65 4.85
419 421 1.990060 GACTAGGGTGCTGCCAGGA 60.990 63.158 0.00 0.00 39.65 3.86
427 429 2.512515 GCTGCCAGGACGCCTTAG 60.513 66.667 0.00 0.00 0.00 2.18
428 430 2.512515 CTGCCAGGACGCCTTAGC 60.513 66.667 0.00 9.41 32.66 3.09
431 434 3.083997 CCAGGACGCCTTAGCCCT 61.084 66.667 0.00 0.00 34.57 5.19
435 438 0.831307 AGGACGCCTTAGCCCTAAAG 59.169 55.000 0.00 0.00 29.70 1.85
485 489 4.840271 TCTGGAGTCGACATAGTGACTAA 58.160 43.478 19.50 0.00 45.09 2.24
492 496 3.377485 TCGACATAGTGACTAAGGAGCAC 59.623 47.826 0.00 0.00 32.86 4.40
493 497 3.696898 GACATAGTGACTAAGGAGCACG 58.303 50.000 0.00 0.00 35.87 5.34
498 502 1.811679 GACTAAGGAGCACGGCAGC 60.812 63.158 0.00 0.00 0.00 5.25
505 509 4.385405 AGCACGGCAGCTCTGTCC 62.385 66.667 0.00 0.00 42.18 4.02
515 519 1.227943 GCTCTGTCCAACTGCCACA 60.228 57.895 0.00 0.00 0.00 4.17
520 524 2.637382 TCTGTCCAACTGCCACATCTTA 59.363 45.455 0.00 0.00 0.00 2.10
538 551 2.355010 TACGGTAGGAGAAGGTAGCC 57.645 55.000 0.00 0.00 0.00 3.93
541 561 1.740905 GTAGGAGAAGGTAGCCGCC 59.259 63.158 0.00 0.00 0.00 6.13
559 579 1.497278 CGCCTCCACATTTGTGTCG 59.503 57.895 9.66 4.32 44.21 4.35
560 580 1.210155 GCCTCCACATTTGTGTCGC 59.790 57.895 9.66 4.48 44.21 5.19
561 581 1.497278 CCTCCACATTTGTGTCGCG 59.503 57.895 0.00 0.00 44.21 5.87
562 582 1.227999 CCTCCACATTTGTGTCGCGT 61.228 55.000 5.77 0.00 44.21 6.01
564 584 0.530870 TCCACATTTGTGTCGCGTCA 60.531 50.000 5.77 3.17 44.21 4.35
565 585 0.110688 CCACATTTGTGTCGCGTCAG 60.111 55.000 6.22 0.00 44.21 3.51
566 586 0.858583 CACATTTGTGTCGCGTCAGA 59.141 50.000 6.22 1.97 40.96 3.27
567 587 1.136529 CACATTTGTGTCGCGTCAGAG 60.137 52.381 6.22 0.00 40.96 3.35
568 588 1.269569 ACATTTGTGTCGCGTCAGAGA 60.270 47.619 6.22 0.62 0.00 3.10
613 655 9.435688 CTTTTTGTTATTTTAGGGGAAATCCAG 57.564 33.333 1.22 0.00 37.91 3.86
621 663 5.710409 TTAGGGGAAATCCAGGTAGAAAG 57.290 43.478 1.22 0.00 37.91 2.62
630 672 7.496263 GGAAATCCAGGTAGAAAGTAGTTGATC 59.504 40.741 0.00 0.00 35.64 2.92
631 673 7.741554 AATCCAGGTAGAAAGTAGTTGATCT 57.258 36.000 0.00 0.00 0.00 2.75
633 675 7.171630 TCCAGGTAGAAAGTAGTTGATCTTC 57.828 40.000 0.00 0.00 0.00 2.87
634 676 6.724441 TCCAGGTAGAAAGTAGTTGATCTTCA 59.276 38.462 0.00 0.00 0.00 3.02
639 681 9.924650 GGTAGAAAGTAGTTGATCTTCAAGTTA 57.075 33.333 3.14 0.00 40.28 2.24
642 684 9.482627 AGAAAGTAGTTGATCTTCAAGTTACAG 57.517 33.333 3.14 0.00 40.28 2.74
673 715 7.928908 TGCAATCAGTGTTAAAAATCTCAAC 57.071 32.000 0.00 0.00 0.00 3.18
715 758 5.472148 TGCTTGTTCTATGGCAAAAAGATG 58.528 37.500 0.00 0.00 0.00 2.90
748 791 4.153117 CCTTTTCTGTCTCTCAAATGTCGG 59.847 45.833 0.00 0.00 0.00 4.79
762 805 8.397906 TCTCAAATGTCGGTGAAATTTATCATC 58.602 33.333 0.00 0.00 29.44 2.92
791 838 4.352009 TCCAAGGCACATTCATATTTGGT 58.648 39.130 0.00 0.00 36.05 3.67
800 847 7.436080 GGCACATTCATATTTGGTTGTCAATAG 59.564 37.037 0.00 0.00 34.98 1.73
897 944 7.231519 TCAATGGATGTACTAGTATCAGGTGAG 59.768 40.741 5.75 0.00 0.00 3.51
906 953 9.733219 GTACTAGTATCAGGTGAGTGAAAATAC 57.267 37.037 5.75 0.00 0.00 1.89
916 963 7.120285 CAGGTGAGTGAAAATACTGATCACAAT 59.880 37.037 7.75 0.00 44.55 2.71
917 964 7.667219 AGGTGAGTGAAAATACTGATCACAATT 59.333 33.333 7.75 0.00 44.55 2.32
952 1009 4.685169 ACTCAAGTCAATTGCCATAACG 57.315 40.909 0.00 0.00 38.89 3.18
961 1023 3.866883 ATTGCCATAACGGTTTCCTTG 57.133 42.857 0.00 0.00 36.97 3.61
997 1059 4.786507 TGATGCAGAATTTGAAGTTGACG 58.213 39.130 0.00 0.00 0.00 4.35
1046 1108 2.092158 TCTCCAACACCACCATGTCAAA 60.092 45.455 0.00 0.00 30.55 2.69
1054 1116 1.073025 ACCATGTCAAAGCTCCGCA 59.927 52.632 0.00 0.00 0.00 5.69
1057 1119 0.027194 CATGTCAAAGCTCCGCATCG 59.973 55.000 0.00 0.00 0.00 3.84
1060 1122 2.099062 CAAAGCTCCGCATCGTGC 59.901 61.111 0.00 0.58 40.69 5.34
1070 1132 2.438434 CATCGTGCTTGGACCCCC 60.438 66.667 0.00 0.00 0.00 5.40
1152 1214 1.131126 CGCGACCTTCTTGCATTCATT 59.869 47.619 0.00 0.00 0.00 2.57
1191 1253 1.136085 CGTTCCGCGTTCATGTCAATT 60.136 47.619 4.92 0.00 35.54 2.32
1233 1295 4.975631 TCTTCCCACCTGTTATTTTTCGA 58.024 39.130 0.00 0.00 0.00 3.71
1258 1320 2.429930 CCGACCAGACAAGCCCAA 59.570 61.111 0.00 0.00 0.00 4.12
1262 1324 0.108585 GACCAGACAAGCCCAACTGA 59.891 55.000 0.00 0.00 32.90 3.41
1271 1333 0.109342 AGCCCAACTGACTCCAACAG 59.891 55.000 0.00 0.00 40.68 3.16
1272 1334 1.518903 GCCCAACTGACTCCAACAGC 61.519 60.000 0.00 0.00 38.74 4.40
1278 1340 1.134220 ACTGACTCCAACAGCGGAAAA 60.134 47.619 0.00 0.00 38.74 2.29
1315 1377 7.290014 TCATTGATCTTGCCTATCCAAGTACTA 59.710 37.037 0.00 0.00 42.16 1.82
1320 1382 7.907841 TCTTGCCTATCCAAGTACTACATTA 57.092 36.000 0.00 0.00 42.16 1.90
1324 1386 6.097270 TGCCTATCCAAGTACTACATTACGTT 59.903 38.462 0.00 0.00 0.00 3.99
1360 1422 7.111466 CCCAAATATTTTGGACACAATGGAAT 58.889 34.615 18.31 0.00 42.06 3.01
1407 1469 0.260230 TCTTCTCCTCCGGCAGATCT 59.740 55.000 0.00 0.00 0.00 2.75
1430 1492 5.334435 CATGTCATTATGGACGTGCTTAG 57.666 43.478 8.99 0.00 44.92 2.18
1436 1498 0.253044 ATGGACGTGCTTAGTGGCAT 59.747 50.000 8.99 0.00 44.34 4.40
1464 1526 1.927527 AGCTCCACCTTGCCCATCT 60.928 57.895 0.00 0.00 0.00 2.90
1493 1555 8.591940 TCAGCTCTGCTATAGAACATTCATATT 58.408 33.333 3.21 0.00 36.40 1.28
1505 1567 7.713750 AGAACATTCATATTTCCAGAAGCATG 58.286 34.615 0.00 0.00 0.00 4.06
1521 1583 1.741706 GCATGGCCGGATTCATATCTG 59.258 52.381 5.05 0.00 36.98 2.90
1531 1593 4.318333 CGGATTCATATCTGTTTGTCAGCG 60.318 45.833 0.00 0.00 43.32 5.18
1533 1595 3.610040 TCATATCTGTTTGTCAGCGGT 57.390 42.857 0.00 0.00 43.32 5.68
1594 1656 4.829064 TGGTTGCACTGTGATTTTCTAC 57.171 40.909 12.86 0.50 0.00 2.59
1651 1713 1.271054 GCCTGGTCATTGCGAGGATAT 60.271 52.381 11.39 0.00 36.61 1.63
1666 1728 4.207224 CGAGGATATGTCAAAAGCTGTACG 59.793 45.833 0.00 0.00 0.00 3.67
1729 1791 5.991606 AGAGTTGCTTGCAGCGATAATATAA 59.008 36.000 3.96 0.00 46.26 0.98
1750 1813 2.519013 ACCATCCAAGCTTTCTGGAAC 58.481 47.619 20.27 0.00 35.13 3.62
1794 1857 4.020928 TGCTTCTCCTATTTGGTCGTAACA 60.021 41.667 0.00 0.00 37.07 2.41
1797 1860 3.118884 TCTCCTATTTGGTCGTAACAGGC 60.119 47.826 0.00 0.00 37.07 4.85
1803 1866 2.038837 GGTCGTAACAGGCAAGCCC 61.039 63.158 7.62 0.00 36.58 5.19
1814 1877 1.221840 GCAAGCCCTCTCCATCGAA 59.778 57.895 0.00 0.00 0.00 3.71
1817 1880 2.648059 CAAGCCCTCTCCATCGAATTT 58.352 47.619 0.00 0.00 0.00 1.82
1864 1927 0.610232 GTGGCAGATGGAGGCTTGTT 60.610 55.000 0.00 0.00 0.00 2.83
1884 1947 3.478857 TGAAGTGGGCGTTCTTCTTTA 57.521 42.857 13.15 0.00 40.20 1.85
1891 1954 1.921230 GGCGTTCTTCTTTAGCGAGAG 59.079 52.381 0.00 0.00 0.00 3.20
1938 2001 1.052617 GAACCCAGAGAGGATAGGGC 58.947 60.000 0.00 0.00 45.45 5.19
1949 2012 1.074471 GATAGGGCTGAGGGGTGGA 60.074 63.158 0.00 0.00 0.00 4.02
2044 2107 2.828520 TGCCTGAACCTTGTTTTGTGAA 59.171 40.909 0.00 0.00 0.00 3.18
2058 2121 1.452110 TGTGAAGATCAACGCCCATG 58.548 50.000 0.00 0.00 0.00 3.66
2059 2122 0.099436 GTGAAGATCAACGCCCATGC 59.901 55.000 0.00 0.00 0.00 4.06
2080 2143 1.226802 CTCGCAGTCCGACATCCTG 60.227 63.158 0.40 0.00 41.89 3.86
2105 2168 1.412710 TCTTGGGTATGAGATCGTGCC 59.587 52.381 0.85 0.85 36.97 5.01
2129 2192 1.204704 CGGTTGTCTCCATGTAGCTGA 59.795 52.381 0.00 0.00 0.00 4.26
2130 2193 2.353704 CGGTTGTCTCCATGTAGCTGAA 60.354 50.000 0.00 0.00 0.00 3.02
2132 2195 3.624861 GGTTGTCTCCATGTAGCTGAATG 59.375 47.826 0.00 0.00 0.00 2.67
2133 2196 4.256920 GTTGTCTCCATGTAGCTGAATGT 58.743 43.478 0.00 0.00 0.00 2.71
2134 2197 4.128925 TGTCTCCATGTAGCTGAATGTC 57.871 45.455 0.00 0.00 0.00 3.06
2135 2198 3.118629 TGTCTCCATGTAGCTGAATGTCC 60.119 47.826 0.00 0.00 0.00 4.02
2141 2232 2.481441 TGTAGCTGAATGTCCCTCCAT 58.519 47.619 0.00 0.00 0.00 3.41
2177 2268 3.000277 GTCGCGAGATTGATGAAGACTTG 60.000 47.826 10.24 0.00 45.19 3.16
2178 2269 2.926200 CGCGAGATTGATGAAGACTTGT 59.074 45.455 0.00 0.00 0.00 3.16
2182 2273 6.401047 CGCGAGATTGATGAAGACTTGTAAAA 60.401 38.462 0.00 0.00 0.00 1.52
2184 2275 7.965107 GCGAGATTGATGAAGACTTGTAAAATT 59.035 33.333 0.00 0.00 0.00 1.82
2202 2293 5.999205 AAATTATGTGTTTGCCATCCTGA 57.001 34.783 0.00 0.00 0.00 3.86
2203 2294 5.587388 AATTATGTGTTTGCCATCCTGAG 57.413 39.130 0.00 0.00 0.00 3.35
2224 2315 2.744741 GCTCCAGGAGTTAGAAACTTGC 59.255 50.000 18.37 0.00 43.03 4.01
2240 2331 2.009774 CTTGCGCTACCTATTGTTGCT 58.990 47.619 9.73 0.00 42.57 3.91
2247 2338 4.868171 CGCTACCTATTGTTGCTTCTGTTA 59.132 41.667 0.00 0.00 42.57 2.41
2262 2353 6.183360 TGCTTCTGTTAAACCTTGTTGTGTAG 60.183 38.462 0.00 0.00 0.00 2.74
2263 2354 6.183360 GCTTCTGTTAAACCTTGTTGTGTAGT 60.183 38.462 0.00 0.00 0.00 2.73
2264 2355 7.627726 GCTTCTGTTAAACCTTGTTGTGTAGTT 60.628 37.037 0.00 0.00 0.00 2.24
2265 2356 8.789825 TTCTGTTAAACCTTGTTGTGTAGTTA 57.210 30.769 0.00 0.00 0.00 2.24
2266 2357 8.789825 TCTGTTAAACCTTGTTGTGTAGTTAA 57.210 30.769 0.00 0.00 0.00 2.01
2272 2363 7.648039 AACCTTGTTGTGTAGTTAATTCCAA 57.352 32.000 0.00 0.00 0.00 3.53
2326 2417 7.067372 TCCTAAAATAAATGTCATGTGCCTGAG 59.933 37.037 0.00 0.00 0.00 3.35
2328 2419 2.211250 AAATGTCATGTGCCTGAGCT 57.789 45.000 0.00 0.00 40.80 4.09
2337 2428 3.762407 TGTGCCTGAGCTTGTAGTTAA 57.238 42.857 0.00 0.00 40.80 2.01
2347 2438 7.387948 CCTGAGCTTGTAGTTAAGTGTTATGTT 59.612 37.037 0.00 0.00 0.00 2.71
2349 2440 8.556194 TGAGCTTGTAGTTAAGTGTTATGTTTG 58.444 33.333 0.00 0.00 0.00 2.93
2350 2441 8.446599 AGCTTGTAGTTAAGTGTTATGTTTGT 57.553 30.769 0.00 0.00 0.00 2.83
2351 2442 8.899771 AGCTTGTAGTTAAGTGTTATGTTTGTT 58.100 29.630 0.00 0.00 0.00 2.83
2352 2443 9.166126 GCTTGTAGTTAAGTGTTATGTTTGTTC 57.834 33.333 0.00 0.00 0.00 3.18
2353 2444 9.659830 CTTGTAGTTAAGTGTTATGTTTGTTCC 57.340 33.333 0.00 0.00 0.00 3.62
2354 2445 8.734218 TGTAGTTAAGTGTTATGTTTGTTCCA 57.266 30.769 0.00 0.00 0.00 3.53
2355 2446 9.344772 TGTAGTTAAGTGTTATGTTTGTTCCAT 57.655 29.630 0.00 0.00 0.00 3.41
2356 2447 9.607285 GTAGTTAAGTGTTATGTTTGTTCCATG 57.393 33.333 0.00 0.00 0.00 3.66
2357 2448 7.145323 AGTTAAGTGTTATGTTTGTTCCATGC 58.855 34.615 0.00 0.00 0.00 4.06
2358 2449 5.528043 AAGTGTTATGTTTGTTCCATGCA 57.472 34.783 0.00 0.00 0.00 3.96
2359 2450 5.726980 AGTGTTATGTTTGTTCCATGCAT 57.273 34.783 0.00 0.00 0.00 3.96
2360 2451 5.713025 AGTGTTATGTTTGTTCCATGCATC 58.287 37.500 0.00 0.00 0.00 3.91
2361 2452 5.477984 AGTGTTATGTTTGTTCCATGCATCT 59.522 36.000 0.00 0.00 0.00 2.90
2362 2453 6.658816 AGTGTTATGTTTGTTCCATGCATCTA 59.341 34.615 0.00 0.00 0.00 1.98
2363 2454 7.340232 AGTGTTATGTTTGTTCCATGCATCTAT 59.660 33.333 0.00 0.00 0.00 1.98
2364 2455 7.645340 GTGTTATGTTTGTTCCATGCATCTATC 59.355 37.037 0.00 0.00 0.00 2.08
2365 2456 7.557358 TGTTATGTTTGTTCCATGCATCTATCT 59.443 33.333 0.00 0.00 0.00 1.98
2366 2457 5.823209 TGTTTGTTCCATGCATCTATCTG 57.177 39.130 0.00 0.00 0.00 2.90
2367 2458 5.255687 TGTTTGTTCCATGCATCTATCTGT 58.744 37.500 0.00 0.00 0.00 3.41
2368 2459 6.413892 TGTTTGTTCCATGCATCTATCTGTA 58.586 36.000 0.00 0.00 0.00 2.74
2369 2460 6.539826 TGTTTGTTCCATGCATCTATCTGTAG 59.460 38.462 0.00 0.00 0.00 2.74
2370 2461 5.876651 TGTTCCATGCATCTATCTGTAGT 57.123 39.130 0.00 0.00 0.00 2.73
2371 2462 6.239217 TGTTCCATGCATCTATCTGTAGTT 57.761 37.500 0.00 0.00 0.00 2.24
2377 2468 6.427974 CATGCATCTATCTGTAGTTTGCTTG 58.572 40.000 0.00 11.14 38.16 4.01
2386 2477 6.169557 TCTGTAGTTTGCTTGTTCTCCTTA 57.830 37.500 0.00 0.00 0.00 2.69
2388 2479 7.224297 TCTGTAGTTTGCTTGTTCTCCTTATT 58.776 34.615 0.00 0.00 0.00 1.40
2389 2480 7.173218 TCTGTAGTTTGCTTGTTCTCCTTATTG 59.827 37.037 0.00 0.00 0.00 1.90
2390 2481 5.712152 AGTTTGCTTGTTCTCCTTATTGG 57.288 39.130 0.00 0.00 37.10 3.16
2391 2482 5.385198 AGTTTGCTTGTTCTCCTTATTGGA 58.615 37.500 0.00 0.00 43.86 3.53
2411 2506 7.384524 TTGGAGGTAATCAGATTCATGAGAT 57.615 36.000 0.00 0.00 31.44 2.75
2416 2511 8.447924 AGGTAATCAGATTCATGAGATGTTTG 57.552 34.615 0.00 0.00 31.44 2.93
2423 2518 5.944599 AGATTCATGAGATGTTTGCTGAAGT 59.055 36.000 0.00 0.00 0.00 3.01
2432 2527 6.789262 AGATGTTTGCTGAAGTAACATATGC 58.211 36.000 1.58 0.00 41.24 3.14
2435 2530 6.380995 TGTTTGCTGAAGTAACATATGCTTG 58.619 36.000 1.58 0.00 33.75 4.01
2447 2543 2.495155 TATGCTTGCTCTTGCCTTGA 57.505 45.000 0.00 0.00 38.71 3.02
2481 2578 4.433186 TTTTACGTTGCATCCAGGAATG 57.567 40.909 0.00 0.00 40.11 2.67
2507 2604 3.081804 GGTAGGAAACTGAATGGTGGTG 58.918 50.000 0.00 0.00 43.88 4.17
2508 2605 2.292828 AGGAAACTGAATGGTGGTGG 57.707 50.000 0.00 0.00 41.13 4.61
2509 2606 1.499007 AGGAAACTGAATGGTGGTGGT 59.501 47.619 0.00 0.00 41.13 4.16
2510 2607 1.613437 GGAAACTGAATGGTGGTGGTG 59.387 52.381 0.00 0.00 0.00 4.17
2511 2608 1.613437 GAAACTGAATGGTGGTGGTGG 59.387 52.381 0.00 0.00 0.00 4.61
2512 2609 0.555769 AACTGAATGGTGGTGGTGGT 59.444 50.000 0.00 0.00 0.00 4.16
2513 2610 0.110486 ACTGAATGGTGGTGGTGGTC 59.890 55.000 0.00 0.00 0.00 4.02
2514 2611 0.401738 CTGAATGGTGGTGGTGGTCT 59.598 55.000 0.00 0.00 0.00 3.85
2515 2612 0.850100 TGAATGGTGGTGGTGGTCTT 59.150 50.000 0.00 0.00 0.00 3.01
2516 2613 1.202879 TGAATGGTGGTGGTGGTCTTC 60.203 52.381 0.00 0.00 0.00 2.87
2517 2614 0.250727 AATGGTGGTGGTGGTCTTCG 60.251 55.000 0.00 0.00 0.00 3.79
2518 2615 1.415672 ATGGTGGTGGTGGTCTTCGT 61.416 55.000 0.00 0.00 0.00 3.85
2519 2616 1.597027 GGTGGTGGTGGTCTTCGTG 60.597 63.158 0.00 0.00 0.00 4.35
2520 2617 1.145377 GTGGTGGTGGTCTTCGTGT 59.855 57.895 0.00 0.00 0.00 4.49
2521 2618 1.145156 TGGTGGTGGTCTTCGTGTG 59.855 57.895 0.00 0.00 0.00 3.82
2522 2619 1.331399 TGGTGGTGGTCTTCGTGTGA 61.331 55.000 0.00 0.00 0.00 3.58
2523 2620 0.179067 GGTGGTGGTCTTCGTGTGAA 60.179 55.000 0.00 0.00 0.00 3.18
2524 2621 1.542547 GGTGGTGGTCTTCGTGTGAAT 60.543 52.381 0.00 0.00 32.61 2.57
2525 2622 2.218603 GTGGTGGTCTTCGTGTGAATT 58.781 47.619 0.00 0.00 32.61 2.17
2526 2623 2.223377 GTGGTGGTCTTCGTGTGAATTC 59.777 50.000 0.00 0.00 32.61 2.17
2527 2624 1.459592 GGTGGTCTTCGTGTGAATTCG 59.540 52.381 0.04 0.00 32.61 3.34
2528 2625 2.400399 GTGGTCTTCGTGTGAATTCGA 58.600 47.619 0.04 0.00 32.61 3.71
2529 2626 2.408704 GTGGTCTTCGTGTGAATTCGAG 59.591 50.000 0.04 0.00 37.38 4.04
2530 2627 2.295070 TGGTCTTCGTGTGAATTCGAGA 59.705 45.455 0.04 0.00 37.38 4.04
2531 2628 2.662156 GGTCTTCGTGTGAATTCGAGAC 59.338 50.000 0.04 7.05 37.38 3.36
2532 2629 3.566523 GTCTTCGTGTGAATTCGAGACT 58.433 45.455 0.04 0.00 37.38 3.24
2533 2630 3.362237 GTCTTCGTGTGAATTCGAGACTG 59.638 47.826 0.04 0.00 37.38 3.51
2534 2631 3.004419 TCTTCGTGTGAATTCGAGACTGT 59.996 43.478 0.04 0.00 37.38 3.55
2535 2632 3.364889 TCGTGTGAATTCGAGACTGTT 57.635 42.857 0.04 0.00 0.00 3.16
2536 2633 3.049912 TCGTGTGAATTCGAGACTGTTG 58.950 45.455 0.04 0.00 0.00 3.33
2537 2634 2.794910 CGTGTGAATTCGAGACTGTTGT 59.205 45.455 0.04 0.00 0.00 3.32
2538 2635 3.362014 CGTGTGAATTCGAGACTGTTGTG 60.362 47.826 0.04 0.00 0.00 3.33
2539 2636 2.543848 TGTGAATTCGAGACTGTTGTGC 59.456 45.455 0.04 0.00 0.00 4.57
2540 2637 2.802816 GTGAATTCGAGACTGTTGTGCT 59.197 45.455 0.04 0.00 0.00 4.40
2541 2638 2.802247 TGAATTCGAGACTGTTGTGCTG 59.198 45.455 0.04 0.00 0.00 4.41
2542 2639 2.820059 ATTCGAGACTGTTGTGCTGA 57.180 45.000 0.00 0.00 0.00 4.26
2543 2640 2.595124 TTCGAGACTGTTGTGCTGAA 57.405 45.000 0.00 0.00 0.00 3.02
2544 2641 2.820059 TCGAGACTGTTGTGCTGAAT 57.180 45.000 0.00 0.00 0.00 2.57
2545 2642 2.407090 TCGAGACTGTTGTGCTGAATG 58.593 47.619 0.00 0.00 0.00 2.67
2546 2643 1.136141 CGAGACTGTTGTGCTGAATGC 60.136 52.381 0.00 0.00 43.25 3.56
2563 2660 8.886816 GCTGAATGCACTATATTGCTTATTAC 57.113 34.615 15.21 4.55 43.41 1.89
2564 2661 8.506437 GCTGAATGCACTATATTGCTTATTACA 58.494 33.333 15.21 7.76 43.41 2.41
2576 2673 9.784531 ATATTGCTTATTACAATGTAGACAGCT 57.215 29.630 15.85 0.00 38.20 4.24
2577 2674 7.921786 TTGCTTATTACAATGTAGACAGCTT 57.078 32.000 15.85 0.00 0.00 3.74
2578 2675 9.613428 ATTGCTTATTACAATGTAGACAGCTTA 57.387 29.630 15.85 8.37 36.41 3.09
2579 2676 8.648557 TGCTTATTACAATGTAGACAGCTTAG 57.351 34.615 15.85 1.60 0.00 2.18
2580 2677 8.258007 TGCTTATTACAATGTAGACAGCTTAGT 58.742 33.333 15.85 0.00 0.00 2.24
2581 2678 9.099454 GCTTATTACAATGTAGACAGCTTAGTT 57.901 33.333 10.62 0.00 0.00 2.24
2585 2682 6.910536 ACAATGTAGACAGCTTAGTTATGC 57.089 37.500 0.00 0.00 0.00 3.14
2586 2683 6.406370 ACAATGTAGACAGCTTAGTTATGCA 58.594 36.000 0.00 0.00 0.00 3.96
2587 2684 6.313905 ACAATGTAGACAGCTTAGTTATGCAC 59.686 38.462 0.00 0.00 0.00 4.57
2588 2685 4.755411 TGTAGACAGCTTAGTTATGCACC 58.245 43.478 0.00 0.00 0.00 5.01
2589 2686 3.981071 AGACAGCTTAGTTATGCACCA 57.019 42.857 0.00 0.00 0.00 4.17
2590 2687 3.866651 AGACAGCTTAGTTATGCACCAG 58.133 45.455 0.00 0.00 0.00 4.00
2591 2688 2.352960 GACAGCTTAGTTATGCACCAGC 59.647 50.000 0.00 0.00 42.57 4.85
2605 2702 3.639099 CCAGCAATATCGATGGGCT 57.361 52.632 8.54 11.08 38.84 5.19
2606 2703 1.901591 CCAGCAATATCGATGGGCTT 58.098 50.000 8.54 0.00 38.84 4.35
2607 2704 2.233271 CCAGCAATATCGATGGGCTTT 58.767 47.619 8.54 0.00 38.84 3.51
2608 2705 3.411446 CCAGCAATATCGATGGGCTTTA 58.589 45.455 8.54 0.00 38.84 1.85
2609 2706 3.189287 CCAGCAATATCGATGGGCTTTAC 59.811 47.826 8.54 0.00 38.84 2.01
2610 2707 3.814842 CAGCAATATCGATGGGCTTTACA 59.185 43.478 8.54 0.00 31.30 2.41
2611 2708 4.456911 CAGCAATATCGATGGGCTTTACAT 59.543 41.667 8.54 0.00 31.30 2.29
2612 2709 4.456911 AGCAATATCGATGGGCTTTACATG 59.543 41.667 8.54 0.00 0.00 3.21
2613 2710 4.216257 GCAATATCGATGGGCTTTACATGT 59.784 41.667 8.54 2.69 0.00 3.21
2614 2711 5.411361 GCAATATCGATGGGCTTTACATGTA 59.589 40.000 8.54 0.08 0.00 2.29
2615 2712 6.072728 GCAATATCGATGGGCTTTACATGTAA 60.073 38.462 14.35 14.35 0.00 2.41
2616 2713 7.521423 GCAATATCGATGGGCTTTACATGTAAA 60.521 37.037 25.48 25.48 34.28 2.01
2617 2714 8.514594 CAATATCGATGGGCTTTACATGTAAAT 58.485 33.333 26.87 14.70 34.86 1.40
2618 2715 6.959639 ATCGATGGGCTTTACATGTAAATT 57.040 33.333 26.87 12.52 34.86 1.82
2619 2716 6.371809 TCGATGGGCTTTACATGTAAATTC 57.628 37.500 26.87 20.94 34.86 2.17
2620 2717 6.119536 TCGATGGGCTTTACATGTAAATTCT 58.880 36.000 26.87 12.97 34.86 2.40
2621 2718 6.601613 TCGATGGGCTTTACATGTAAATTCTT 59.398 34.615 26.87 17.45 34.86 2.52
2622 2719 6.692681 CGATGGGCTTTACATGTAAATTCTTG 59.307 38.462 26.87 17.47 34.86 3.02
2623 2720 6.279513 TGGGCTTTACATGTAAATTCTTGG 57.720 37.500 26.87 16.87 34.86 3.61
2624 2721 6.013379 TGGGCTTTACATGTAAATTCTTGGA 58.987 36.000 26.87 6.81 34.86 3.53
2625 2722 6.152661 TGGGCTTTACATGTAAATTCTTGGAG 59.847 38.462 26.87 15.80 34.86 3.86
2626 2723 6.405842 GGGCTTTACATGTAAATTCTTGGAGG 60.406 42.308 26.87 15.08 34.86 4.30
2627 2724 6.152831 GGCTTTACATGTAAATTCTTGGAGGT 59.847 38.462 26.87 0.00 34.86 3.85
2628 2725 7.338449 GGCTTTACATGTAAATTCTTGGAGGTA 59.662 37.037 26.87 4.85 34.86 3.08
2629 2726 8.903820 GCTTTACATGTAAATTCTTGGAGGTAT 58.096 33.333 26.87 0.00 34.86 2.73
2631 2728 9.967451 TTTACATGTAAATTCTTGGAGGTATCA 57.033 29.630 23.91 0.00 30.78 2.15
2634 2731 9.784531 ACATGTAAATTCTTGGAGGTATCATAG 57.215 33.333 0.00 0.00 0.00 2.23
2635 2732 8.725148 CATGTAAATTCTTGGAGGTATCATAGC 58.275 37.037 0.00 0.00 0.00 2.97
2636 2733 7.801104 TGTAAATTCTTGGAGGTATCATAGCA 58.199 34.615 0.00 0.00 0.00 3.49
2637 2734 8.271458 TGTAAATTCTTGGAGGTATCATAGCAA 58.729 33.333 0.00 0.00 0.00 3.91
2638 2735 9.289782 GTAAATTCTTGGAGGTATCATAGCAAT 57.710 33.333 0.00 0.00 0.00 3.56
2639 2736 7.756395 AATTCTTGGAGGTATCATAGCAATG 57.244 36.000 0.00 0.00 0.00 2.82
2640 2737 6.499106 TTCTTGGAGGTATCATAGCAATGA 57.501 37.500 0.00 0.00 46.01 2.57
2641 2738 6.106648 TCTTGGAGGTATCATAGCAATGAG 57.893 41.667 0.00 0.00 45.17 2.90
2642 2739 4.277515 TGGAGGTATCATAGCAATGAGC 57.722 45.455 0.00 0.00 45.17 4.26
2643 2740 3.647590 TGGAGGTATCATAGCAATGAGCA 59.352 43.478 0.00 0.00 45.17 4.26
2644 2741 4.102996 TGGAGGTATCATAGCAATGAGCAA 59.897 41.667 0.00 0.00 45.17 3.91
2645 2742 5.221986 TGGAGGTATCATAGCAATGAGCAAT 60.222 40.000 0.00 0.00 45.17 3.56
2646 2743 5.123502 GGAGGTATCATAGCAATGAGCAATG 59.876 44.000 0.00 0.00 45.17 2.82
2647 2744 5.008331 AGGTATCATAGCAATGAGCAATGG 58.992 41.667 0.00 0.00 45.17 3.16
2648 2745 3.936372 ATCATAGCAATGAGCAATGGC 57.064 42.857 0.00 0.00 45.17 4.40
2662 2759 4.612932 GCAATGGCTGAACTTAGAGAAG 57.387 45.455 0.00 0.00 36.47 2.85
2663 2760 4.256920 GCAATGGCTGAACTTAGAGAAGA 58.743 43.478 0.00 0.00 35.24 2.87
2664 2761 4.697352 GCAATGGCTGAACTTAGAGAAGAA 59.303 41.667 0.00 0.00 35.24 2.52
2665 2762 5.391416 GCAATGGCTGAACTTAGAGAAGAAC 60.391 44.000 0.00 0.00 35.24 3.01
2666 2763 5.753721 ATGGCTGAACTTAGAGAAGAACT 57.246 39.130 0.00 0.00 36.45 3.01
2667 2764 5.552870 TGGCTGAACTTAGAGAAGAACTT 57.447 39.130 0.00 0.00 36.45 2.66
2668 2765 5.300752 TGGCTGAACTTAGAGAAGAACTTG 58.699 41.667 0.00 0.00 36.45 3.16
2669 2766 5.163301 TGGCTGAACTTAGAGAAGAACTTGT 60.163 40.000 0.00 0.00 36.45 3.16
2670 2767 5.178438 GGCTGAACTTAGAGAAGAACTTGTG 59.822 44.000 0.00 0.00 36.45 3.33
2671 2768 5.986135 GCTGAACTTAGAGAAGAACTTGTGA 59.014 40.000 0.00 0.00 36.45 3.58
2672 2769 6.648725 GCTGAACTTAGAGAAGAACTTGTGAT 59.351 38.462 0.00 0.00 36.45 3.06
2673 2770 7.359933 GCTGAACTTAGAGAAGAACTTGTGATG 60.360 40.741 0.00 0.00 36.45 3.07
2674 2771 6.425114 TGAACTTAGAGAAGAACTTGTGATGC 59.575 38.462 0.00 0.00 36.45 3.91
2675 2772 5.858381 ACTTAGAGAAGAACTTGTGATGCA 58.142 37.500 0.00 0.00 36.45 3.96
2676 2773 6.291377 ACTTAGAGAAGAACTTGTGATGCAA 58.709 36.000 0.00 0.00 36.45 4.08
2677 2774 6.767902 ACTTAGAGAAGAACTTGTGATGCAAA 59.232 34.615 0.00 0.00 35.15 3.68
2678 2775 7.446625 ACTTAGAGAAGAACTTGTGATGCAAAT 59.553 33.333 0.00 0.00 35.15 2.32
2679 2776 6.010294 AGAGAAGAACTTGTGATGCAAATG 57.990 37.500 0.00 0.00 36.53 2.32
2680 2777 4.553323 AGAAGAACTTGTGATGCAAATGC 58.447 39.130 0.00 0.00 36.53 3.56
2681 2778 4.280174 AGAAGAACTTGTGATGCAAATGCT 59.720 37.500 6.97 0.00 42.66 3.79
2682 2779 4.170292 AGAACTTGTGATGCAAATGCTC 57.830 40.909 6.97 2.91 42.66 4.26
2683 2780 3.570975 AGAACTTGTGATGCAAATGCTCA 59.429 39.130 6.97 5.37 42.66 4.26
2684 2781 4.219944 AGAACTTGTGATGCAAATGCTCAT 59.780 37.500 6.97 0.00 42.66 2.90
2685 2782 5.416639 AGAACTTGTGATGCAAATGCTCATA 59.583 36.000 6.97 4.05 42.66 2.15
2686 2783 5.244785 ACTTGTGATGCAAATGCTCATAG 57.755 39.130 6.97 10.75 42.66 2.23
2687 2784 4.703575 ACTTGTGATGCAAATGCTCATAGT 59.296 37.500 6.97 11.23 42.66 2.12
2688 2785 5.184479 ACTTGTGATGCAAATGCTCATAGTT 59.816 36.000 6.97 0.00 42.66 2.24
2689 2786 6.375174 ACTTGTGATGCAAATGCTCATAGTTA 59.625 34.615 6.97 0.00 42.66 2.24
2690 2787 6.947644 TGTGATGCAAATGCTCATAGTTAT 57.052 33.333 6.97 0.00 42.66 1.89
2691 2788 6.731164 TGTGATGCAAATGCTCATAGTTATG 58.269 36.000 6.97 0.00 42.66 1.90
2692 2789 5.628193 GTGATGCAAATGCTCATAGTTATGC 59.372 40.000 6.97 0.00 42.66 3.14
2693 2790 5.299782 TGATGCAAATGCTCATAGTTATGCA 59.700 36.000 6.97 0.00 45.36 3.96
2694 2791 5.777850 TGCAAATGCTCATAGTTATGCAT 57.222 34.783 3.79 3.79 46.46 3.96
2702 2799 7.962964 TGCTCATAGTTATGCATTACTAACC 57.037 36.000 24.74 15.08 33.76 2.85
2703 2800 6.934645 TGCTCATAGTTATGCATTACTAACCC 59.065 38.462 24.74 15.34 33.76 4.11
2704 2801 6.090898 GCTCATAGTTATGCATTACTAACCCG 59.909 42.308 24.74 15.32 33.76 5.28
2705 2802 6.460781 TCATAGTTATGCATTACTAACCCGG 58.539 40.000 24.74 14.11 33.76 5.73
2706 2803 4.765813 AGTTATGCATTACTAACCCGGT 57.234 40.909 16.39 0.00 0.00 5.28
2707 2804 4.448210 AGTTATGCATTACTAACCCGGTG 58.552 43.478 16.39 0.00 0.00 4.94
2708 2805 2.341846 ATGCATTACTAACCCGGTGG 57.658 50.000 0.00 0.00 37.80 4.61
2733 2830 6.890663 TGTATATACAACAACGTGTAAGGC 57.109 37.500 13.24 0.00 37.52 4.35
2734 2831 6.632909 TGTATATACAACAACGTGTAAGGCT 58.367 36.000 13.24 0.00 37.52 4.58
2735 2832 7.770201 TGTATATACAACAACGTGTAAGGCTA 58.230 34.615 13.24 0.00 37.52 3.93
2736 2833 8.415553 TGTATATACAACAACGTGTAAGGCTAT 58.584 33.333 13.24 0.00 37.52 2.97
2737 2834 7.709269 ATATACAACAACGTGTAAGGCTATG 57.291 36.000 0.00 0.00 37.52 2.23
2738 2835 3.071479 ACAACAACGTGTAAGGCTATGG 58.929 45.455 0.00 0.00 0.00 2.74
2739 2836 3.244284 ACAACAACGTGTAAGGCTATGGA 60.244 43.478 0.00 0.00 0.00 3.41
2740 2837 3.688694 ACAACGTGTAAGGCTATGGAA 57.311 42.857 0.00 0.00 0.00 3.53
2741 2838 4.216411 ACAACGTGTAAGGCTATGGAAT 57.784 40.909 0.00 0.00 0.00 3.01
2742 2839 4.585879 ACAACGTGTAAGGCTATGGAATT 58.414 39.130 0.00 0.00 0.00 2.17
2743 2840 5.736813 ACAACGTGTAAGGCTATGGAATTA 58.263 37.500 0.00 0.00 0.00 1.40
2744 2841 5.583457 ACAACGTGTAAGGCTATGGAATTAC 59.417 40.000 0.00 0.00 0.00 1.89
2745 2842 5.347620 ACGTGTAAGGCTATGGAATTACA 57.652 39.130 0.00 0.00 36.16 2.41
2746 2843 5.925509 ACGTGTAAGGCTATGGAATTACAT 58.074 37.500 8.55 8.55 39.53 2.29
2747 2844 6.354130 ACGTGTAAGGCTATGGAATTACATT 58.646 36.000 8.85 0.00 39.53 2.71
2748 2845 6.482308 ACGTGTAAGGCTATGGAATTACATTC 59.518 38.462 8.85 1.33 39.53 2.67
2749 2846 6.706270 CGTGTAAGGCTATGGAATTACATTCT 59.294 38.462 8.85 1.98 39.53 2.40
2750 2847 7.870954 CGTGTAAGGCTATGGAATTACATTCTA 59.129 37.037 8.85 0.00 39.53 2.10
2751 2848 9.555727 GTGTAAGGCTATGGAATTACATTCTAA 57.444 33.333 8.85 0.00 39.53 2.10
2752 2849 9.555727 TGTAAGGCTATGGAATTACATTCTAAC 57.444 33.333 8.85 1.63 39.24 2.34
2753 2850 9.555727 GTAAGGCTATGGAATTACATTCTAACA 57.444 33.333 8.85 0.00 39.24 2.41
2755 2852 9.646522 AAGGCTATGGAATTACATTCTAACAAT 57.353 29.630 8.85 0.00 39.24 2.71
2756 2853 9.646522 AGGCTATGGAATTACATTCTAACAATT 57.353 29.630 8.85 0.00 39.24 2.32
2757 2854 9.899226 GGCTATGGAATTACATTCTAACAATTC 57.101 33.333 8.85 0.00 39.24 2.17
2762 2859 8.293699 GGAATTACATTCTAACAATTCCTGGT 57.706 34.615 14.68 0.00 46.80 4.00
2763 2860 8.190784 GGAATTACATTCTAACAATTCCTGGTG 58.809 37.037 14.68 0.00 46.80 4.17
2764 2861 8.877864 AATTACATTCTAACAATTCCTGGTGA 57.122 30.769 0.00 0.00 0.00 4.02
2765 2862 7.681939 TTACATTCTAACAATTCCTGGTGAC 57.318 36.000 0.00 0.00 0.00 3.67
2766 2863 5.010282 ACATTCTAACAATTCCTGGTGACC 58.990 41.667 0.00 0.00 0.00 4.02
2767 2864 3.328382 TCTAACAATTCCTGGTGACCG 57.672 47.619 0.00 0.00 0.00 4.79
2768 2865 2.901192 TCTAACAATTCCTGGTGACCGA 59.099 45.455 0.00 0.00 0.00 4.69
2769 2866 1.892209 AACAATTCCTGGTGACCGAC 58.108 50.000 0.00 0.00 0.00 4.79
2770 2867 0.036306 ACAATTCCTGGTGACCGACC 59.964 55.000 0.00 0.00 46.37 4.79
2771 2868 0.676782 CAATTCCTGGTGACCGACCC 60.677 60.000 0.00 0.00 45.45 4.46
2772 2869 1.848886 AATTCCTGGTGACCGACCCC 61.849 60.000 0.00 0.00 45.45 4.95
2787 2884 4.825679 CCCCCTCCCCTCCTGGTC 62.826 77.778 0.00 0.00 0.00 4.02
2790 2887 4.787280 CCTCCCCTCCTGGTCGCT 62.787 72.222 0.00 0.00 0.00 4.93
2791 2888 3.151022 CTCCCCTCCTGGTCGCTC 61.151 72.222 0.00 0.00 0.00 5.03
2792 2889 4.779733 TCCCCTCCTGGTCGCTCC 62.780 72.222 0.00 0.00 0.00 4.70
2795 2892 3.775654 CCTCCTGGTCGCTCCCAC 61.776 72.222 0.00 0.00 34.77 4.61
2796 2893 4.135153 CTCCTGGTCGCTCCCACG 62.135 72.222 0.00 0.00 34.77 4.94
2797 2894 4.671590 TCCTGGTCGCTCCCACGA 62.672 66.667 0.00 0.00 40.36 4.35
2798 2895 4.135153 CCTGGTCGCTCCCACGAG 62.135 72.222 0.00 0.00 43.89 4.18
2799 2896 3.374402 CTGGTCGCTCCCACGAGT 61.374 66.667 0.00 0.00 43.89 4.18
2800 2897 3.633094 CTGGTCGCTCCCACGAGTG 62.633 68.421 0.00 0.00 46.23 3.51
2806 2903 4.778415 CTCCCACGAGTGACGCGG 62.778 72.222 14.07 2.05 46.94 6.46
2808 2905 4.778415 CCCACGAGTGACGCGGAG 62.778 72.222 14.07 5.10 45.74 4.63
2809 2906 4.778415 CCACGAGTGACGCGGAGG 62.778 72.222 14.07 10.64 45.74 4.30
2820 2917 2.202892 GCGGAGGCGAAACCCTAG 60.203 66.667 0.00 0.00 40.58 3.02
2821 2918 2.202892 CGGAGGCGAAACCCTAGC 60.203 66.667 0.00 0.00 40.58 3.42
2825 2922 4.468689 GGCGAAACCCTAGCCGCT 62.469 66.667 0.00 0.00 46.02 5.52
2826 2923 3.195698 GCGAAACCCTAGCCGCTG 61.196 66.667 2.16 0.00 43.75 5.18
2827 2924 2.511600 CGAAACCCTAGCCGCTGG 60.512 66.667 2.16 0.00 0.00 4.85
2828 2925 2.669240 GAAACCCTAGCCGCTGGT 59.331 61.111 2.16 0.00 0.00 4.00
2829 2926 1.449778 GAAACCCTAGCCGCTGGTC 60.450 63.158 2.16 0.00 0.00 4.02
2830 2927 3.310860 AAACCCTAGCCGCTGGTCG 62.311 63.158 2.16 0.00 38.08 4.79
2833 2930 4.880537 CCTAGCCGCTGGTCGCAG 62.881 72.222 2.16 0.00 39.08 5.18
2834 2931 4.880537 CTAGCCGCTGGTCGCAGG 62.881 72.222 2.16 0.00 39.08 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.424956 GCCATGTTAGGAAAGAGCAAGG 59.575 50.000 0.00 0.00 0.00 3.61
15 16 3.350833 AGCCATGTTAGGAAAGAGCAAG 58.649 45.455 0.00 0.00 0.00 4.01
68 69 3.817647 GCTCATCTGAGGTGAACAAAGTT 59.182 43.478 9.15 0.00 42.29 2.66
74 75 3.341823 ACATTGCTCATCTGAGGTGAAC 58.658 45.455 9.15 0.00 42.29 3.18
103 104 6.363577 TGTACTGACTTTTCTTGCTTTCAG 57.636 37.500 0.00 0.00 37.17 3.02
104 105 6.374333 AGTTGTACTGACTTTTCTTGCTTTCA 59.626 34.615 0.00 0.00 0.00 2.69
107 108 6.456988 CGAAGTTGTACTGACTTTTCTTGCTT 60.457 38.462 13.84 0.00 37.46 3.91
128 129 4.278678 AGCTTTGTCAAACTTGTCGAAG 57.721 40.909 10.55 10.55 39.30 3.79
160 161 7.651704 GGTTTGTCTGTGTGTGCTTTATTAAAT 59.348 33.333 0.00 0.00 0.00 1.40
162 163 6.460399 GGGTTTGTCTGTGTGTGCTTTATTAA 60.460 38.462 0.00 0.00 0.00 1.40
163 164 5.009210 GGGTTTGTCTGTGTGTGCTTTATTA 59.991 40.000 0.00 0.00 0.00 0.98
164 165 4.202111 GGGTTTGTCTGTGTGTGCTTTATT 60.202 41.667 0.00 0.00 0.00 1.40
194 196 0.373716 GTTTTGCTCGGACGGCATAG 59.626 55.000 8.28 0.00 39.54 2.23
196 198 2.332654 GGTTTTGCTCGGACGGCAT 61.333 57.895 8.28 0.00 39.54 4.40
197 199 2.975799 GGTTTTGCTCGGACGGCA 60.976 61.111 0.00 4.24 37.97 5.69
200 202 2.549282 CGTGGTTTTGCTCGGACG 59.451 61.111 0.00 0.00 0.00 4.79
202 204 2.203084 TGCGTGGTTTTGCTCGGA 60.203 55.556 0.00 0.00 0.00 4.55
206 208 4.264638 GCCGTGCGTGGTTTTGCT 62.265 61.111 0.00 0.00 0.00 3.91
207 209 4.264638 AGCCGTGCGTGGTTTTGC 62.265 61.111 0.00 0.00 0.00 3.68
209 211 2.515057 TCAGCCGTGCGTGGTTTT 60.515 55.556 0.00 0.00 0.00 2.43
224 226 3.198853 TCACAATTATCATCCACCGGTCA 59.801 43.478 2.59 0.00 0.00 4.02
232 234 6.974932 ATGCTATCGTCACAATTATCATCC 57.025 37.500 0.00 0.00 0.00 3.51
247 249 2.472861 CGTAGTTGCCTGAATGCTATCG 59.527 50.000 0.00 0.00 0.00 2.92
257 259 2.813908 GGTCCGCGTAGTTGCCTG 60.814 66.667 4.92 0.00 0.00 4.85
266 268 3.075005 ATGCCTACTGGTCCGCGT 61.075 61.111 4.92 0.00 35.27 6.01
267 269 2.586079 CATGCCTACTGGTCCGCG 60.586 66.667 0.00 0.00 35.27 6.46
269 271 3.309582 ACCATGCCTACTGGTCCG 58.690 61.111 0.00 0.00 43.59 4.79
282 284 2.780414 TCAAGATCTGGATGGGACCAT 58.220 47.619 2.93 2.93 39.34 3.55
287 289 2.626743 GGCAATTCAAGATCTGGATGGG 59.373 50.000 0.00 0.00 0.00 4.00
334 336 9.495572 CTTAAAAACCTTGGGCTCTAGATATAG 57.504 37.037 0.00 0.00 0.00 1.31
337 339 6.659824 CCTTAAAAACCTTGGGCTCTAGATA 58.340 40.000 0.00 0.00 0.00 1.98
340 342 3.444034 GCCTTAAAAACCTTGGGCTCTAG 59.556 47.826 0.00 0.00 36.96 2.43
363 365 0.374758 ACGCTTGATTGCTGTATGCG 59.625 50.000 0.00 0.00 46.63 4.73
385 387 4.010349 CCTAGTCTTTTGTTGGCCTTAGG 58.990 47.826 3.32 0.00 0.00 2.69
391 393 1.269723 GCACCCTAGTCTTTTGTTGGC 59.730 52.381 0.00 0.00 0.00 4.52
392 394 2.554032 CAGCACCCTAGTCTTTTGTTGG 59.446 50.000 0.00 0.00 0.00 3.77
393 395 2.030805 GCAGCACCCTAGTCTTTTGTTG 60.031 50.000 0.00 0.00 0.00 3.33
401 403 1.990060 TCCTGGCAGCACCCTAGTC 60.990 63.158 9.56 0.00 37.83 2.59
402 404 2.122729 TCCTGGCAGCACCCTAGT 59.877 61.111 9.56 0.00 37.83 2.57
417 419 0.179054 CCTTTAGGGCTAAGGCGTCC 60.179 60.000 0.00 0.00 39.81 4.79
431 434 0.854218 TGGGTGTCCTTTGCCCTTTA 59.146 50.000 0.00 0.00 42.77 1.85
435 438 1.152546 AACTGGGTGTCCTTTGCCC 60.153 57.895 0.00 0.00 42.64 5.36
437 440 0.467290 TGGAACTGGGTGTCCTTTGC 60.467 55.000 0.00 0.00 0.00 3.68
445 448 1.842562 AGATCTGGATGGAACTGGGTG 59.157 52.381 0.00 0.00 0.00 4.61
446 449 1.842562 CAGATCTGGATGGAACTGGGT 59.157 52.381 15.38 0.00 34.08 4.51
472 475 3.489398 CCGTGCTCCTTAGTCACTATGTC 60.489 52.174 0.00 0.00 31.54 3.06
473 476 2.427453 CCGTGCTCCTTAGTCACTATGT 59.573 50.000 0.00 0.00 31.54 2.29
492 496 2.031516 CAGTTGGACAGAGCTGCCG 61.032 63.158 0.00 0.00 32.09 5.69
493 497 2.331132 GCAGTTGGACAGAGCTGCC 61.331 63.158 0.00 1.16 45.96 4.85
498 502 1.002888 AGATGTGGCAGTTGGACAGAG 59.997 52.381 0.00 0.00 32.72 3.35
500 504 1.901591 AAGATGTGGCAGTTGGACAG 58.098 50.000 0.00 0.00 32.72 3.51
502 506 1.732259 CGTAAGATGTGGCAGTTGGAC 59.268 52.381 0.00 0.00 43.02 4.02
505 509 1.808411 ACCGTAAGATGTGGCAGTTG 58.192 50.000 0.00 0.00 43.02 3.16
515 519 4.143543 GCTACCTTCTCCTACCGTAAGAT 58.856 47.826 0.00 0.00 43.02 2.40
520 524 0.750911 CGGCTACCTTCTCCTACCGT 60.751 60.000 0.00 0.00 34.61 4.83
538 551 3.055719 ACAAATGTGGAGGCGGCG 61.056 61.111 0.51 0.51 0.00 6.46
550 570 2.061773 CTTCTCTGACGCGACACAAAT 58.938 47.619 15.93 0.00 0.00 2.32
551 571 1.487482 CTTCTCTGACGCGACACAAA 58.513 50.000 15.93 4.26 0.00 2.83
560 580 2.115595 CAGATAAGCGCTTCTCTGACG 58.884 52.381 40.95 25.09 42.74 4.35
561 581 3.157932 ACAGATAAGCGCTTCTCTGAC 57.842 47.619 45.61 25.92 42.74 3.51
562 582 3.876274 AACAGATAAGCGCTTCTCTGA 57.124 42.857 45.61 26.66 42.74 3.27
564 584 4.393371 GGAAAAACAGATAAGCGCTTCTCT 59.607 41.667 28.82 27.74 0.00 3.10
565 585 4.393371 AGGAAAAACAGATAAGCGCTTCTC 59.607 41.667 28.82 25.85 0.00 2.87
566 586 4.327680 AGGAAAAACAGATAAGCGCTTCT 58.672 39.130 28.82 18.21 0.00 2.85
567 587 4.686839 AGGAAAAACAGATAAGCGCTTC 57.313 40.909 28.82 14.19 0.00 3.86
568 588 5.453567 AAAGGAAAAACAGATAAGCGCTT 57.546 34.783 27.97 27.97 0.00 4.68
613 655 8.834749 AACTTGAAGATCAACTACTTTCTACC 57.165 34.615 0.00 0.00 32.21 3.18
687 729 8.313292 TCTTTTTGCCATAGAACAAGCATTAAT 58.687 29.630 0.00 0.00 34.72 1.40
690 732 6.100404 TCTTTTTGCCATAGAACAAGCATT 57.900 33.333 0.00 0.00 34.72 3.56
702 744 3.756933 AGTGTTGCATCTTTTTGCCAT 57.243 38.095 0.00 0.00 42.06 4.40
861 908 9.712305 ACTAGTACATCCATTGATAATTACAGC 57.288 33.333 0.00 0.00 0.00 4.40
946 1003 9.801873 AATTATGAATTCAAGGAAACCGTTATG 57.198 29.630 13.09 0.00 0.00 1.90
974 1036 5.214417 CGTCAACTTCAAATTCTGCATCAA 58.786 37.500 0.00 0.00 0.00 2.57
997 1059 4.167554 TCCGGTTGATGTTTTGCATAAC 57.832 40.909 12.51 12.51 38.06 1.89
1020 1082 0.320374 TGGTGGTGTTGGAGATCGTC 59.680 55.000 0.00 0.00 0.00 4.20
1021 1083 0.984230 ATGGTGGTGTTGGAGATCGT 59.016 50.000 0.00 0.00 0.00 3.73
1054 1116 2.933287 TGGGGGTCCAAGCACGAT 60.933 61.111 0.00 0.00 40.73 3.73
1057 1119 3.146828 AACCTGGGGGTCCAAGCAC 62.147 63.158 0.00 0.00 46.67 4.40
1060 1122 2.440599 CCAACCTGGGGGTCCAAG 59.559 66.667 0.00 0.00 46.67 3.61
1070 1132 3.281240 GCATGTCAGCCCAACCTG 58.719 61.111 0.00 0.00 0.00 4.00
1152 1214 4.601794 CAACTGGGGCAGGTGGCA 62.602 66.667 5.83 0.00 44.58 4.92
1174 1236 2.095213 GCTTAATTGACATGAACGCGGA 59.905 45.455 12.47 0.00 0.00 5.54
1191 1253 3.969976 AGATCATGTCTAAGGCAGGCTTA 59.030 43.478 15.36 15.36 34.69 3.09
1233 1295 0.107410 TTGTCTGGTCGGCACAGTTT 60.107 50.000 5.59 0.00 37.25 2.66
1258 1320 0.468226 TTTCCGCTGTTGGAGTCAGT 59.532 50.000 0.00 0.00 39.72 3.41
1262 1324 1.757682 TGTTTTTCCGCTGTTGGAGT 58.242 45.000 0.00 0.00 39.72 3.85
1271 1333 0.171231 GAGCTCCCATGTTTTTCCGC 59.829 55.000 0.87 0.00 0.00 5.54
1272 1334 1.533625 TGAGCTCCCATGTTTTTCCG 58.466 50.000 12.15 0.00 0.00 4.30
1278 1340 3.947612 AGATCAATGAGCTCCCATGTT 57.052 42.857 12.15 2.68 0.00 2.71
1315 1377 1.530323 GGGCTCAACCAACGTAATGT 58.470 50.000 0.00 0.00 42.05 2.71
1360 1422 9.995003 AGCATGACCATAAGAACATTTTAAAAA 57.005 25.926 4.44 0.00 0.00 1.94
1365 1427 8.757982 AGATAGCATGACCATAAGAACATTTT 57.242 30.769 0.00 0.00 0.00 1.82
1407 1469 3.541996 AGCACGTCCATAATGACATGA 57.458 42.857 0.00 0.00 30.31 3.07
1428 1490 2.023673 GCTGCAACCATAATGCCACTA 58.976 47.619 0.00 0.00 43.16 2.74
1430 1492 0.819582 AGCTGCAACCATAATGCCAC 59.180 50.000 1.02 0.00 43.16 5.01
1436 1498 0.698238 AGGTGGAGCTGCAACCATAA 59.302 50.000 20.79 0.00 38.48 1.90
1464 1526 7.955918 TGAATGTTCTATAGCAGAGCTGAATA 58.044 34.615 0.85 0.00 40.10 1.75
1493 1555 1.925285 ATCCGGCCATGCTTCTGGAA 61.925 55.000 2.24 0.00 38.69 3.53
1505 1567 3.214328 ACAAACAGATATGAATCCGGCC 58.786 45.455 0.00 0.00 31.98 6.13
1531 1593 2.434359 GTACAGGCAGTGCGGACC 60.434 66.667 9.45 0.00 0.00 4.46
1594 1656 3.284617 TCTCATGGATCAAATGTGCCTG 58.715 45.455 7.32 0.00 0.00 4.85
1596 1658 4.238761 CATCTCATGGATCAAATGTGCC 57.761 45.455 7.32 0.00 31.27 5.01
1634 1696 2.433970 TGACATATCCTCGCAATGACCA 59.566 45.455 0.00 0.00 0.00 4.02
1651 1713 1.855978 CACGACGTACAGCTTTTGACA 59.144 47.619 0.00 0.00 0.00 3.58
1729 1791 2.893489 GTTCCAGAAAGCTTGGATGGTT 59.107 45.455 19.04 0.00 32.68 3.67
1750 1813 0.307760 GTCTTCACAAGCCACCAACG 59.692 55.000 0.00 0.00 0.00 4.10
1782 1845 0.948678 GCTTGCCTGTTACGACCAAA 59.051 50.000 0.00 0.00 0.00 3.28
1794 1857 2.739996 CGATGGAGAGGGCTTGCCT 61.740 63.158 11.71 0.00 0.00 4.75
1797 1860 2.338577 AATTCGATGGAGAGGGCTTG 57.661 50.000 0.00 0.00 0.00 4.01
1814 1877 3.632145 ACTTTGCAGGTTCAGTCGAAAAT 59.368 39.130 0.00 0.00 31.43 1.82
1817 1880 2.325583 ACTTTGCAGGTTCAGTCGAA 57.674 45.000 0.00 0.00 0.00 3.71
1864 1927 2.341846 AAAGAAGAACGCCCACTTCA 57.658 45.000 0.00 0.00 43.13 3.02
1884 1947 1.320344 TGGCCAATACGTCTCTCGCT 61.320 55.000 0.61 0.00 44.19 4.93
1938 2001 2.040178 GTATACCTGTCCACCCCTCAG 58.960 57.143 0.00 0.00 0.00 3.35
2000 2063 4.161295 TCCCCATCTTGCTCGCCG 62.161 66.667 0.00 0.00 0.00 6.46
2006 2069 1.379044 CACCCACTCCCCATCTTGC 60.379 63.158 0.00 0.00 0.00 4.01
2080 2143 3.062763 CGATCTCATACCCAAGATGCAC 58.937 50.000 0.00 0.00 32.43 4.57
2135 2198 1.330655 ACAGCGTCTACCCATGGAGG 61.331 60.000 15.22 0.00 37.03 4.30
2141 2232 2.959372 CGACACAGCGTCTACCCA 59.041 61.111 0.00 0.00 42.98 4.51
2177 2268 7.319646 TCAGGATGGCAAACACATAATTTTAC 58.680 34.615 0.00 0.00 36.16 2.01
2178 2269 7.473735 TCAGGATGGCAAACACATAATTTTA 57.526 32.000 0.00 0.00 36.16 1.52
2182 2273 3.382546 GCTCAGGATGGCAAACACATAAT 59.617 43.478 0.00 0.00 36.16 1.28
2184 2275 2.025981 AGCTCAGGATGGCAAACACATA 60.026 45.455 0.00 0.00 35.20 2.29
2185 2276 1.180029 GCTCAGGATGGCAAACACAT 58.820 50.000 0.00 0.00 36.16 3.21
2202 2293 3.558109 GCAAGTTTCTAACTCCTGGAGCT 60.558 47.826 23.43 14.29 41.91 4.09
2203 2294 2.744741 GCAAGTTTCTAACTCCTGGAGC 59.255 50.000 23.43 5.42 41.91 4.70
2214 2305 5.080969 ACAATAGGTAGCGCAAGTTTCTA 57.919 39.130 11.47 2.79 41.68 2.10
2224 2315 3.262420 ACAGAAGCAACAATAGGTAGCG 58.738 45.455 0.00 0.00 0.00 4.26
2240 2331 7.690952 AACTACACAACAAGGTTTAACAGAA 57.309 32.000 0.00 0.00 0.00 3.02
2247 2338 7.648039 TGGAATTAACTACACAACAAGGTTT 57.352 32.000 0.00 0.00 0.00 3.27
2269 2360 6.554605 ACCCCTGTATATTTCATCCAAATTGG 59.445 38.462 5.48 5.48 39.43 3.16
2272 2363 9.143155 GTAAACCCCTGTATATTTCATCCAAAT 57.857 33.333 0.00 0.00 38.35 2.32
2280 2371 9.856162 TTTAGGATGTAAACCCCTGTATATTTC 57.144 33.333 0.00 0.00 0.00 2.17
2326 2417 9.166126 GAACAAACATAACACTTAACTACAAGC 57.834 33.333 0.00 0.00 0.00 4.01
2328 2419 9.175312 TGGAACAAACATAACACTTAACTACAA 57.825 29.630 0.00 0.00 31.92 2.41
2347 2438 6.239217 ACTACAGATAGATGCATGGAACAA 57.761 37.500 2.46 0.00 35.14 2.83
2349 2440 6.512415 GCAAACTACAGATAGATGCATGGAAC 60.512 42.308 2.46 0.00 40.92 3.62
2350 2441 5.528690 GCAAACTACAGATAGATGCATGGAA 59.471 40.000 2.46 0.00 40.92 3.53
2351 2442 5.059161 GCAAACTACAGATAGATGCATGGA 58.941 41.667 2.46 0.00 40.92 3.41
2352 2443 5.061853 AGCAAACTACAGATAGATGCATGG 58.938 41.667 2.46 0.00 42.31 3.66
2353 2444 6.037940 ACAAGCAAACTACAGATAGATGCATG 59.962 38.462 2.46 14.48 42.42 4.06
2354 2445 6.118170 ACAAGCAAACTACAGATAGATGCAT 58.882 36.000 0.00 0.00 42.31 3.96
2355 2446 5.491070 ACAAGCAAACTACAGATAGATGCA 58.509 37.500 14.55 0.00 42.31 3.96
2356 2447 6.314896 AGAACAAGCAAACTACAGATAGATGC 59.685 38.462 8.04 8.04 41.24 3.91
2357 2448 7.010923 GGAGAACAAGCAAACTACAGATAGATG 59.989 40.741 0.00 0.00 32.23 2.90
2358 2449 7.044798 GGAGAACAAGCAAACTACAGATAGAT 58.955 38.462 0.00 0.00 32.23 1.98
2359 2450 6.211584 AGGAGAACAAGCAAACTACAGATAGA 59.788 38.462 0.00 0.00 32.23 1.98
2360 2451 6.402222 AGGAGAACAAGCAAACTACAGATAG 58.598 40.000 0.00 0.00 34.25 2.08
2361 2452 6.360370 AGGAGAACAAGCAAACTACAGATA 57.640 37.500 0.00 0.00 0.00 1.98
2362 2453 5.234466 AGGAGAACAAGCAAACTACAGAT 57.766 39.130 0.00 0.00 0.00 2.90
2363 2454 4.689612 AGGAGAACAAGCAAACTACAGA 57.310 40.909 0.00 0.00 0.00 3.41
2364 2455 7.301054 CAATAAGGAGAACAAGCAAACTACAG 58.699 38.462 0.00 0.00 0.00 2.74
2365 2456 6.206634 CCAATAAGGAGAACAAGCAAACTACA 59.793 38.462 0.00 0.00 41.22 2.74
2366 2457 6.430000 TCCAATAAGGAGAACAAGCAAACTAC 59.570 38.462 0.00 0.00 43.07 2.73
2367 2458 6.539173 TCCAATAAGGAGAACAAGCAAACTA 58.461 36.000 0.00 0.00 43.07 2.24
2368 2459 5.385198 TCCAATAAGGAGAACAAGCAAACT 58.615 37.500 0.00 0.00 43.07 2.66
2369 2460 5.705609 TCCAATAAGGAGAACAAGCAAAC 57.294 39.130 0.00 0.00 43.07 2.93
2386 2477 7.384524 TCTCATGAATCTGATTACCTCCAAT 57.615 36.000 2.28 0.00 0.00 3.16
2388 2479 6.328410 ACATCTCATGAATCTGATTACCTCCA 59.672 38.462 2.28 0.00 0.00 3.86
2389 2480 6.767456 ACATCTCATGAATCTGATTACCTCC 58.233 40.000 2.28 0.00 0.00 4.30
2390 2481 8.557864 CAAACATCTCATGAATCTGATTACCTC 58.442 37.037 2.28 0.00 0.00 3.85
2391 2482 7.013083 GCAAACATCTCATGAATCTGATTACCT 59.987 37.037 2.28 0.00 0.00 3.08
2394 2485 7.771826 TCAGCAAACATCTCATGAATCTGATTA 59.228 33.333 2.28 0.00 0.00 1.75
2398 2493 5.813080 TCAGCAAACATCTCATGAATCTG 57.187 39.130 0.00 0.00 0.00 2.90
2403 2498 5.997129 TGTTACTTCAGCAAACATCTCATGA 59.003 36.000 0.00 0.00 0.00 3.07
2411 2506 6.380995 CAAGCATATGTTACTTCAGCAAACA 58.619 36.000 4.29 0.00 37.51 2.83
2416 2511 4.574013 AGAGCAAGCATATGTTACTTCAGC 59.426 41.667 4.29 1.05 0.00 4.26
2423 2518 3.889815 AGGCAAGAGCAAGCATATGTTA 58.110 40.909 4.29 0.00 44.61 2.41
2432 2527 1.132643 GCAGATCAAGGCAAGAGCAAG 59.867 52.381 0.00 0.00 44.61 4.01
2435 2530 2.322355 TAGCAGATCAAGGCAAGAGC 57.678 50.000 0.00 0.00 41.10 4.09
2466 2563 3.244181 ACCAAAACATTCCTGGATGCAAC 60.244 43.478 0.00 0.00 34.16 4.17
2470 2567 4.599041 TCCTACCAAAACATTCCTGGATG 58.401 43.478 0.00 0.88 34.16 3.51
2481 2578 5.508994 CCACCATTCAGTTTCCTACCAAAAC 60.509 44.000 0.00 0.00 36.97 2.43
2496 2593 0.850100 AAGACCACCACCACCATTCA 59.150 50.000 0.00 0.00 0.00 2.57
2507 2604 1.459592 CGAATTCACACGAAGACCACC 59.540 52.381 6.22 0.00 33.74 4.61
2508 2605 2.400399 TCGAATTCACACGAAGACCAC 58.600 47.619 6.22 0.00 35.62 4.16
2509 2606 2.295070 TCTCGAATTCACACGAAGACCA 59.705 45.455 6.22 0.00 38.05 4.02
2510 2607 2.662156 GTCTCGAATTCACACGAAGACC 59.338 50.000 6.22 0.00 38.05 3.85
2511 2608 3.362237 CAGTCTCGAATTCACACGAAGAC 59.638 47.826 6.22 7.83 38.05 3.01
2512 2609 3.004419 ACAGTCTCGAATTCACACGAAGA 59.996 43.478 6.22 0.00 38.05 2.87
2513 2610 3.309388 ACAGTCTCGAATTCACACGAAG 58.691 45.455 6.22 0.00 38.05 3.79
2514 2611 3.364889 ACAGTCTCGAATTCACACGAA 57.635 42.857 6.22 0.00 38.05 3.85
2515 2612 3.049912 CAACAGTCTCGAATTCACACGA 58.950 45.455 6.22 0.00 37.03 4.35
2516 2613 2.794910 ACAACAGTCTCGAATTCACACG 59.205 45.455 6.22 0.00 0.00 4.49
2517 2614 3.604772 GCACAACAGTCTCGAATTCACAC 60.605 47.826 6.22 0.00 0.00 3.82
2518 2615 2.543848 GCACAACAGTCTCGAATTCACA 59.456 45.455 6.22 0.00 0.00 3.58
2519 2616 2.802816 AGCACAACAGTCTCGAATTCAC 59.197 45.455 6.22 0.00 0.00 3.18
2520 2617 2.802247 CAGCACAACAGTCTCGAATTCA 59.198 45.455 6.22 0.00 0.00 2.57
2521 2618 3.059884 TCAGCACAACAGTCTCGAATTC 58.940 45.455 0.00 0.00 0.00 2.17
2522 2619 3.111853 TCAGCACAACAGTCTCGAATT 57.888 42.857 0.00 0.00 0.00 2.17
2523 2620 2.820059 TCAGCACAACAGTCTCGAAT 57.180 45.000 0.00 0.00 0.00 3.34
2524 2621 2.595124 TTCAGCACAACAGTCTCGAA 57.405 45.000 0.00 0.00 0.00 3.71
2525 2622 2.407090 CATTCAGCACAACAGTCTCGA 58.593 47.619 0.00 0.00 0.00 4.04
2526 2623 1.136141 GCATTCAGCACAACAGTCTCG 60.136 52.381 0.00 0.00 44.79 4.04
2527 2624 2.608467 GCATTCAGCACAACAGTCTC 57.392 50.000 0.00 0.00 44.79 3.36
2550 2647 9.784531 AGCTGTCTACATTGTAATAAGCAATAT 57.215 29.630 18.78 3.97 35.09 1.28
2551 2648 9.613428 AAGCTGTCTACATTGTAATAAGCAATA 57.387 29.630 18.78 0.00 35.09 1.90
2552 2649 8.511604 AAGCTGTCTACATTGTAATAAGCAAT 57.488 30.769 18.78 9.79 37.06 3.56
2553 2650 7.921786 AAGCTGTCTACATTGTAATAAGCAA 57.078 32.000 18.78 0.00 0.00 3.91
2554 2651 8.258007 ACTAAGCTGTCTACATTGTAATAAGCA 58.742 33.333 18.78 6.32 0.00 3.91
2555 2652 8.649973 ACTAAGCTGTCTACATTGTAATAAGC 57.350 34.615 12.82 12.82 0.00 3.09
2559 2656 9.046296 GCATAACTAAGCTGTCTACATTGTAAT 57.954 33.333 0.00 0.00 0.00 1.89
2560 2657 8.038351 TGCATAACTAAGCTGTCTACATTGTAA 58.962 33.333 0.00 0.00 0.00 2.41
2561 2658 7.491372 GTGCATAACTAAGCTGTCTACATTGTA 59.509 37.037 0.00 0.00 0.00 2.41
2562 2659 6.313905 GTGCATAACTAAGCTGTCTACATTGT 59.686 38.462 0.00 0.00 0.00 2.71
2563 2660 6.238211 GGTGCATAACTAAGCTGTCTACATTG 60.238 42.308 0.00 0.00 0.00 2.82
2564 2661 5.817816 GGTGCATAACTAAGCTGTCTACATT 59.182 40.000 0.00 0.00 0.00 2.71
2565 2662 5.104941 TGGTGCATAACTAAGCTGTCTACAT 60.105 40.000 0.00 0.00 0.00 2.29
2566 2663 4.221924 TGGTGCATAACTAAGCTGTCTACA 59.778 41.667 0.00 0.00 0.00 2.74
2567 2664 4.755411 TGGTGCATAACTAAGCTGTCTAC 58.245 43.478 0.00 0.00 0.00 2.59
2568 2665 4.680708 GCTGGTGCATAACTAAGCTGTCTA 60.681 45.833 0.00 0.00 39.41 2.59
2569 2666 3.866651 CTGGTGCATAACTAAGCTGTCT 58.133 45.455 0.00 0.00 0.00 3.41
2570 2667 2.352960 GCTGGTGCATAACTAAGCTGTC 59.647 50.000 0.00 0.00 39.41 3.51
2571 2668 2.290260 TGCTGGTGCATAACTAAGCTGT 60.290 45.455 0.00 0.00 45.31 4.40
2572 2669 2.358957 TGCTGGTGCATAACTAAGCTG 58.641 47.619 0.00 0.00 45.31 4.24
2573 2670 2.787473 TGCTGGTGCATAACTAAGCT 57.213 45.000 0.00 0.00 45.31 3.74
2584 2681 0.877071 CCCATCGATATTGCTGGTGC 59.123 55.000 11.17 0.00 40.20 5.01
2585 2682 0.877071 GCCCATCGATATTGCTGGTG 59.123 55.000 11.17 4.99 0.00 4.17
2586 2683 0.767375 AGCCCATCGATATTGCTGGT 59.233 50.000 12.94 0.00 0.00 4.00
2587 2684 1.901591 AAGCCCATCGATATTGCTGG 58.098 50.000 14.06 5.92 31.55 4.85
2588 2685 3.814842 TGTAAAGCCCATCGATATTGCTG 59.185 43.478 14.06 0.00 31.55 4.41
2589 2686 4.085357 TGTAAAGCCCATCGATATTGCT 57.915 40.909 0.00 3.49 0.00 3.91
2590 2687 4.216257 ACATGTAAAGCCCATCGATATTGC 59.784 41.667 0.00 0.84 0.00 3.56
2591 2688 5.947228 ACATGTAAAGCCCATCGATATTG 57.053 39.130 0.00 0.00 0.00 1.90
2592 2689 8.635765 ATTTACATGTAAAGCCCATCGATATT 57.364 30.769 29.25 10.70 38.30 1.28
2593 2690 8.635765 AATTTACATGTAAAGCCCATCGATAT 57.364 30.769 29.25 10.87 38.30 1.63
2594 2691 7.936847 AGAATTTACATGTAAAGCCCATCGATA 59.063 33.333 29.25 8.54 38.30 2.92
2595 2692 6.772716 AGAATTTACATGTAAAGCCCATCGAT 59.227 34.615 29.25 11.93 38.30 3.59
2596 2693 6.119536 AGAATTTACATGTAAAGCCCATCGA 58.880 36.000 29.25 9.64 38.30 3.59
2597 2694 6.377327 AGAATTTACATGTAAAGCCCATCG 57.623 37.500 29.25 0.00 38.30 3.84
2598 2695 6.980397 CCAAGAATTTACATGTAAAGCCCATC 59.020 38.462 29.25 21.50 38.30 3.51
2599 2696 6.667414 TCCAAGAATTTACATGTAAAGCCCAT 59.333 34.615 29.25 14.41 38.30 4.00
2600 2697 6.013379 TCCAAGAATTTACATGTAAAGCCCA 58.987 36.000 29.25 12.23 38.30 5.36
2601 2698 6.405842 CCTCCAAGAATTTACATGTAAAGCCC 60.406 42.308 29.25 21.23 38.30 5.19
2602 2699 6.152831 ACCTCCAAGAATTTACATGTAAAGCC 59.847 38.462 29.25 23.15 38.30 4.35
2603 2700 7.158099 ACCTCCAAGAATTTACATGTAAAGC 57.842 36.000 29.25 23.72 38.30 3.51
2605 2702 9.967451 TGATACCTCCAAGAATTTACATGTAAA 57.033 29.630 28.30 28.30 39.12 2.01
2608 2705 9.784531 CTATGATACCTCCAAGAATTTACATGT 57.215 33.333 2.69 2.69 0.00 3.21
2609 2706 8.725148 GCTATGATACCTCCAAGAATTTACATG 58.275 37.037 0.00 0.00 0.00 3.21
2610 2707 8.439971 TGCTATGATACCTCCAAGAATTTACAT 58.560 33.333 0.00 0.00 0.00 2.29
2611 2708 7.801104 TGCTATGATACCTCCAAGAATTTACA 58.199 34.615 0.00 0.00 0.00 2.41
2612 2709 8.677148 TTGCTATGATACCTCCAAGAATTTAC 57.323 34.615 0.00 0.00 0.00 2.01
2613 2710 9.288576 CATTGCTATGATACCTCCAAGAATTTA 57.711 33.333 1.51 0.00 33.37 1.40
2614 2711 8.000709 TCATTGCTATGATACCTCCAAGAATTT 58.999 33.333 6.75 0.00 35.87 1.82
2615 2712 7.520798 TCATTGCTATGATACCTCCAAGAATT 58.479 34.615 6.75 0.00 35.87 2.17
2616 2713 7.083062 TCATTGCTATGATACCTCCAAGAAT 57.917 36.000 6.75 0.00 35.87 2.40
2617 2714 6.499106 TCATTGCTATGATACCTCCAAGAA 57.501 37.500 6.75 0.00 35.87 2.52
2618 2715 5.512060 GCTCATTGCTATGATACCTCCAAGA 60.512 44.000 11.29 0.00 39.94 3.02
2619 2716 4.694509 GCTCATTGCTATGATACCTCCAAG 59.305 45.833 11.29 0.00 39.94 3.61
2620 2717 4.102996 TGCTCATTGCTATGATACCTCCAA 59.897 41.667 11.29 0.00 39.94 3.53
2621 2718 3.647590 TGCTCATTGCTATGATACCTCCA 59.352 43.478 11.29 0.81 39.94 3.86
2622 2719 4.277515 TGCTCATTGCTATGATACCTCC 57.722 45.455 11.29 0.00 39.94 4.30
2637 2734 9.423956 TCTTCTCTAAGTTCAGCCATTGCTCAT 62.424 40.741 0.00 0.00 38.75 2.90
2638 2735 8.203563 TCTTCTCTAAGTTCAGCCATTGCTCA 62.204 42.308 0.00 0.00 38.75 4.26
2639 2736 5.856140 TCTTCTCTAAGTTCAGCCATTGCTC 60.856 44.000 0.00 0.00 38.75 4.26
2640 2737 4.019860 TCTTCTCTAAGTTCAGCCATTGCT 60.020 41.667 0.00 0.00 40.24 3.91
2641 2738 4.256920 TCTTCTCTAAGTTCAGCCATTGC 58.743 43.478 0.00 0.00 34.13 3.56
2642 2739 5.936956 AGTTCTTCTCTAAGTTCAGCCATTG 59.063 40.000 0.00 0.00 34.13 2.82
2643 2740 6.120507 AGTTCTTCTCTAAGTTCAGCCATT 57.879 37.500 0.00 0.00 34.13 3.16
2644 2741 5.753721 AGTTCTTCTCTAAGTTCAGCCAT 57.246 39.130 0.00 0.00 34.13 4.40
2645 2742 5.163301 ACAAGTTCTTCTCTAAGTTCAGCCA 60.163 40.000 0.00 0.00 34.13 4.75
2646 2743 5.178438 CACAAGTTCTTCTCTAAGTTCAGCC 59.822 44.000 0.00 0.00 34.13 4.85
2647 2744 5.986135 TCACAAGTTCTTCTCTAAGTTCAGC 59.014 40.000 0.00 0.00 34.13 4.26
2648 2745 7.359933 GCATCACAAGTTCTTCTCTAAGTTCAG 60.360 40.741 0.00 0.00 34.13 3.02
2649 2746 6.425114 GCATCACAAGTTCTTCTCTAAGTTCA 59.575 38.462 0.00 0.00 34.13 3.18
2650 2747 6.425114 TGCATCACAAGTTCTTCTCTAAGTTC 59.575 38.462 0.00 0.00 34.13 3.01
2651 2748 6.291377 TGCATCACAAGTTCTTCTCTAAGTT 58.709 36.000 0.00 0.00 34.13 2.66
2652 2749 5.858381 TGCATCACAAGTTCTTCTCTAAGT 58.142 37.500 0.00 0.00 34.13 2.24
2653 2750 6.791887 TTGCATCACAAGTTCTTCTCTAAG 57.208 37.500 0.00 0.00 33.24 2.18
2654 2751 7.587629 CATTTGCATCACAAGTTCTTCTCTAA 58.412 34.615 0.00 0.00 40.06 2.10
2655 2752 6.348786 GCATTTGCATCACAAGTTCTTCTCTA 60.349 38.462 0.00 0.00 40.06 2.43
2656 2753 5.564259 GCATTTGCATCACAAGTTCTTCTCT 60.564 40.000 0.00 0.00 40.06 3.10
2657 2754 4.620184 GCATTTGCATCACAAGTTCTTCTC 59.380 41.667 0.00 0.00 40.06 2.87
2658 2755 4.280174 AGCATTTGCATCACAAGTTCTTCT 59.720 37.500 5.20 0.00 45.16 2.85
2659 2756 4.553323 AGCATTTGCATCACAAGTTCTTC 58.447 39.130 5.20 0.00 45.16 2.87
2660 2757 4.038282 TGAGCATTTGCATCACAAGTTCTT 59.962 37.500 5.20 0.00 45.16 2.52
2661 2758 3.570975 TGAGCATTTGCATCACAAGTTCT 59.429 39.130 5.20 0.00 45.16 3.01
2662 2759 3.904571 TGAGCATTTGCATCACAAGTTC 58.095 40.909 5.20 0.00 45.16 3.01
2663 2760 4.530710 ATGAGCATTTGCATCACAAGTT 57.469 36.364 5.20 0.00 45.16 2.66
2664 2761 4.703575 ACTATGAGCATTTGCATCACAAGT 59.296 37.500 5.20 9.50 45.16 3.16
2665 2762 5.244785 ACTATGAGCATTTGCATCACAAG 57.755 39.130 5.20 9.01 45.16 3.16
2666 2763 5.648178 AACTATGAGCATTTGCATCACAA 57.352 34.783 5.20 0.00 45.16 3.33
2667 2764 6.731164 CATAACTATGAGCATTTGCATCACA 58.269 36.000 5.20 0.49 45.16 3.58
2668 2765 5.628193 GCATAACTATGAGCATTTGCATCAC 59.372 40.000 5.20 0.00 37.57 3.06
2669 2766 5.299782 TGCATAACTATGAGCATTTGCATCA 59.700 36.000 5.20 6.28 37.57 3.07
2670 2767 5.765176 TGCATAACTATGAGCATTTGCATC 58.235 37.500 5.20 0.82 37.57 3.91
2671 2768 5.777850 TGCATAACTATGAGCATTTGCAT 57.222 34.783 5.20 0.00 37.57 3.96
2672 2769 5.777850 ATGCATAACTATGAGCATTTGCA 57.222 34.783 0.00 0.00 44.63 4.08
2678 2775 6.934645 GGGTTAGTAATGCATAACTATGAGCA 59.065 38.462 0.00 0.00 41.73 4.26
2679 2776 6.090898 CGGGTTAGTAATGCATAACTATGAGC 59.909 42.308 0.00 0.00 35.75 4.26
2680 2777 6.590292 CCGGGTTAGTAATGCATAACTATGAG 59.410 42.308 0.00 0.00 35.75 2.90
2681 2778 6.042322 ACCGGGTTAGTAATGCATAACTATGA 59.958 38.462 6.32 0.00 35.75 2.15
2682 2779 6.147164 CACCGGGTTAGTAATGCATAACTATG 59.853 42.308 6.32 0.00 36.78 2.23
2683 2780 6.228258 CACCGGGTTAGTAATGCATAACTAT 58.772 40.000 6.32 0.00 33.36 2.12
2684 2781 5.453621 CCACCGGGTTAGTAATGCATAACTA 60.454 44.000 6.32 0.00 33.36 2.24
2685 2782 4.448210 CACCGGGTTAGTAATGCATAACT 58.552 43.478 6.32 0.00 33.36 2.24
2686 2783 3.562557 CCACCGGGTTAGTAATGCATAAC 59.437 47.826 6.32 0.00 0.00 1.89
2687 2784 3.811083 CCACCGGGTTAGTAATGCATAA 58.189 45.455 6.32 0.00 0.00 1.90
2688 2785 3.478857 CCACCGGGTTAGTAATGCATA 57.521 47.619 6.32 0.00 0.00 3.14
2689 2786 2.341846 CCACCGGGTTAGTAATGCAT 57.658 50.000 6.32 0.00 0.00 3.96
2690 2787 3.865477 CCACCGGGTTAGTAATGCA 57.135 52.632 6.32 0.00 0.00 3.96
2709 2806 7.098477 AGCCTTACACGTTGTTGTATATACAA 58.902 34.615 21.73 21.73 43.32 2.41
2710 2807 6.632909 AGCCTTACACGTTGTTGTATATACA 58.367 36.000 11.62 11.62 31.98 2.29
2711 2808 8.697067 CATAGCCTTACACGTTGTTGTATATAC 58.303 37.037 5.89 5.89 31.98 1.47
2712 2809 7.868922 CCATAGCCTTACACGTTGTTGTATATA 59.131 37.037 0.00 0.00 31.98 0.86
2713 2810 6.704493 CCATAGCCTTACACGTTGTTGTATAT 59.296 38.462 0.00 0.00 31.98 0.86
2714 2811 6.044046 CCATAGCCTTACACGTTGTTGTATA 58.956 40.000 0.00 0.00 31.98 1.47
2715 2812 4.873827 CCATAGCCTTACACGTTGTTGTAT 59.126 41.667 0.00 0.00 31.98 2.29
2716 2813 4.021280 TCCATAGCCTTACACGTTGTTGTA 60.021 41.667 0.00 0.00 0.00 2.41
2717 2814 3.071479 CCATAGCCTTACACGTTGTTGT 58.929 45.455 0.00 0.00 0.00 3.32
2718 2815 3.331150 TCCATAGCCTTACACGTTGTTG 58.669 45.455 0.00 0.00 0.00 3.33
2719 2816 3.688694 TCCATAGCCTTACACGTTGTT 57.311 42.857 0.00 0.00 0.00 2.83
2720 2817 3.688694 TTCCATAGCCTTACACGTTGT 57.311 42.857 0.00 0.00 0.00 3.32
2721 2818 5.583061 TGTAATTCCATAGCCTTACACGTTG 59.417 40.000 0.00 0.00 31.14 4.10
2722 2819 5.736813 TGTAATTCCATAGCCTTACACGTT 58.263 37.500 0.00 0.00 31.14 3.99
2723 2820 5.347620 TGTAATTCCATAGCCTTACACGT 57.652 39.130 0.00 0.00 31.14 4.49
2724 2821 6.861065 AATGTAATTCCATAGCCTTACACG 57.139 37.500 0.00 0.00 37.03 4.49
2739 2836 8.739972 GTCACCAGGAATTGTTAGAATGTAATT 58.260 33.333 0.00 0.00 40.93 1.40
2740 2837 7.339466 GGTCACCAGGAATTGTTAGAATGTAAT 59.661 37.037 0.00 0.00 0.00 1.89
2741 2838 6.657541 GGTCACCAGGAATTGTTAGAATGTAA 59.342 38.462 0.00 0.00 0.00 2.41
2742 2839 6.177610 GGTCACCAGGAATTGTTAGAATGTA 58.822 40.000 0.00 0.00 0.00 2.29
2743 2840 5.010282 GGTCACCAGGAATTGTTAGAATGT 58.990 41.667 0.00 0.00 0.00 2.71
2744 2841 4.094887 CGGTCACCAGGAATTGTTAGAATG 59.905 45.833 0.00 0.00 0.00 2.67
2745 2842 4.019681 TCGGTCACCAGGAATTGTTAGAAT 60.020 41.667 0.00 0.00 0.00 2.40
2746 2843 3.325425 TCGGTCACCAGGAATTGTTAGAA 59.675 43.478 0.00 0.00 0.00 2.10
2747 2844 2.901192 TCGGTCACCAGGAATTGTTAGA 59.099 45.455 0.00 0.00 0.00 2.10
2748 2845 3.000727 GTCGGTCACCAGGAATTGTTAG 58.999 50.000 0.00 0.00 0.00 2.34
2749 2846 2.289819 GGTCGGTCACCAGGAATTGTTA 60.290 50.000 0.00 0.00 45.98 2.41
2750 2847 1.544759 GGTCGGTCACCAGGAATTGTT 60.545 52.381 0.00 0.00 45.98 2.83
2751 2848 0.036306 GGTCGGTCACCAGGAATTGT 59.964 55.000 0.00 0.00 45.98 2.71
2752 2849 2.854522 GGTCGGTCACCAGGAATTG 58.145 57.895 0.00 0.00 45.98 2.32
2770 2867 4.825679 GACCAGGAGGGGAGGGGG 62.826 77.778 0.00 0.00 42.91 5.40
2773 2870 4.787280 AGCGACCAGGAGGGGAGG 62.787 72.222 0.00 0.00 42.91 4.30
2774 2871 3.151022 GAGCGACCAGGAGGGGAG 61.151 72.222 0.00 0.00 42.91 4.30
2775 2872 4.779733 GGAGCGACCAGGAGGGGA 62.780 72.222 0.00 0.00 42.91 4.81
2778 2875 3.775654 GTGGGAGCGACCAGGAGG 61.776 72.222 2.44 0.00 42.20 4.30
2779 2876 4.135153 CGTGGGAGCGACCAGGAG 62.135 72.222 14.67 2.09 46.56 3.69
2781 2878 4.135153 CTCGTGGGAGCGACCAGG 62.135 72.222 13.92 13.92 45.36 4.45
2782 2879 3.374402 ACTCGTGGGAGCGACCAG 61.374 66.667 2.44 0.00 44.48 4.00
2783 2880 3.680786 CACTCGTGGGAGCGACCA 61.681 66.667 0.00 0.00 44.48 4.02
2784 2881 3.371063 TCACTCGTGGGAGCGACC 61.371 66.667 0.00 0.00 44.48 4.79
2785 2882 2.126424 GTCACTCGTGGGAGCGAC 60.126 66.667 0.00 0.00 42.99 5.19
2786 2883 3.733960 CGTCACTCGTGGGAGCGA 61.734 66.667 6.03 0.00 44.48 4.93
2803 2900 2.202892 CTAGGGTTTCGCCTCCGC 60.203 66.667 0.00 0.00 37.43 5.54
2804 2901 2.202892 GCTAGGGTTTCGCCTCCG 60.203 66.667 0.00 0.00 37.43 4.63
2805 2902 2.189784 GGCTAGGGTTTCGCCTCC 59.810 66.667 0.00 0.00 40.62 4.30
2806 2903 2.202892 CGGCTAGGGTTTCGCCTC 60.203 66.667 0.00 0.00 41.61 4.70
2807 2904 4.468689 GCGGCTAGGGTTTCGCCT 62.469 66.667 0.00 0.00 41.61 5.52
2810 2907 2.511600 CCAGCGGCTAGGGTTTCG 60.512 66.667 0.26 0.00 0.00 3.46
2811 2908 1.449778 GACCAGCGGCTAGGGTTTC 60.450 63.158 12.69 3.48 34.39 2.78
2812 2909 2.669240 GACCAGCGGCTAGGGTTT 59.331 61.111 12.69 0.00 34.39 3.27
2813 2910 3.771160 CGACCAGCGGCTAGGGTT 61.771 66.667 12.69 0.00 34.39 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.