Multiple sequence alignment - TraesCS4A01G454500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G454500 chr4A 100.000 2950 0 0 1 2950 718620505 718617556 0.000000e+00 5448.0
1 TraesCS4A01G454500 chr4A 90.917 2301 163 16 675 2944 718834891 718837176 0.000000e+00 3049.0
2 TraesCS4A01G454500 chr4A 85.185 351 51 1 974 1323 718866154 718866504 2.800000e-95 359.0
3 TraesCS4A01G454500 chr7A 86.591 1499 150 17 697 2164 14931576 14933054 0.000000e+00 1607.0
4 TraesCS4A01G454500 chr7D 88.497 765 75 10 2189 2950 16150951 16151705 0.000000e+00 913.0
5 TraesCS4A01G454500 chr7D 89.091 660 63 7 1535 2190 16148811 16149465 0.000000e+00 811.0
6 TraesCS4A01G454500 chr7D 89.130 506 31 7 456 944 16147065 16147563 2.510000e-170 608.0
7 TraesCS4A01G454500 chr7D 84.083 578 75 8 783 1360 26503880 26504440 2.590000e-150 542.0
8 TraesCS4A01G454500 chr7D 81.906 619 100 9 2178 2793 3103482 3104091 2.030000e-141 512.0
9 TraesCS4A01G454500 chr7D 81.906 619 100 9 2178 2793 3160286 3159677 2.030000e-141 512.0
10 TraesCS4A01G454500 chr7D 84.741 367 53 1 981 1347 26494162 26494525 6.010000e-97 364.0
11 TraesCS4A01G454500 chr7D 85.714 273 36 2 2674 2946 26526040 26526309 4.810000e-73 285.0
12 TraesCS4A01G454500 chr7D 95.506 178 7 1 1 178 582600229 582600405 1.730000e-72 283.0
13 TraesCS4A01G454500 chr7D 81.148 122 16 7 2028 2142 16200014 16200135 1.130000e-14 91.6
14 TraesCS4A01G454500 chr3D 87.696 764 81 8 2189 2950 584704464 584703712 0.000000e+00 878.0
15 TraesCS4A01G454500 chr3D 84.341 926 99 13 456 1360 584713643 584712743 0.000000e+00 865.0
16 TraesCS4A01G454500 chr3D 89.453 512 50 2 1535 2043 584711634 584711124 0.000000e+00 643.0
17 TraesCS4A01G454500 chr3D 96.045 177 7 0 1 177 472882052 472881876 3.720000e-74 289.0
18 TraesCS4A01G454500 chr3D 91.304 207 14 2 176 379 324639342 324639547 2.240000e-71 279.0
19 TraesCS4A01G454500 chr3D 81.148 122 16 7 2028 2142 584688429 584688308 1.130000e-14 91.6
20 TraesCS4A01G454500 chr1B 82.428 552 77 12 2178 2727 453746128 453746661 5.760000e-127 464.0
21 TraesCS4A01G454500 chr5D 81.548 504 76 14 2178 2677 520505414 520504924 1.650000e-107 399.0
22 TraesCS4A01G454500 chr5D 76.899 645 128 16 2165 2797 352218161 352217526 2.180000e-91 346.0
23 TraesCS4A01G454500 chr5D 92.754 207 12 1 176 379 545218953 545218747 2.220000e-76 296.0
24 TraesCS4A01G454500 chr5D 92.424 198 11 2 185 379 175607270 175607074 2.240000e-71 279.0
25 TraesCS4A01G454500 chr5D 92.424 198 11 2 185 379 179078957 179078761 2.240000e-71 279.0
26 TraesCS4A01G454500 chr5D 91.304 207 15 1 176 379 210677958 210678164 2.240000e-71 279.0
27 TraesCS4A01G454500 chr5D 93.085 188 11 1 1 188 179651536 179651351 1.040000e-69 274.0
28 TraesCS4A01G454500 chr2B 78.219 629 107 18 2163 2777 49718085 49718697 2.780000e-100 375.0
29 TraesCS4A01G454500 chr6A 80.076 527 81 20 2165 2683 30132654 30132144 1.290000e-98 370.0
30 TraesCS4A01G454500 chr3A 95.531 179 8 0 1 179 623608496 623608318 1.340000e-73 287.0
31 TraesCS4A01G454500 chr3A 95.480 177 8 0 1 177 340266095 340265919 1.730000e-72 283.0
32 TraesCS4A01G454500 chr2D 92.929 198 10 2 185 379 79833342 79833146 4.810000e-73 285.0
33 TraesCS4A01G454500 chr1D 94.972 179 9 0 1 179 411905069 411904891 6.230000e-72 281.0
34 TraesCS4A01G454500 chr1D 91.304 207 14 2 176 379 343946313 343946108 2.240000e-71 279.0
35 TraesCS4A01G454500 chr7B 94.944 178 9 0 1 178 405063048 405062871 2.240000e-71 279.0
36 TraesCS4A01G454500 chr6B 94.944 178 9 0 1 178 39362878 39363055 2.240000e-71 279.0
37 TraesCS4A01G454500 chr5A 94.944 178 9 0 1 178 597683437 597683614 2.240000e-71 279.0
38 TraesCS4A01G454500 chr5A 88.938 226 20 3 176 396 244993215 244993440 1.040000e-69 274.0
39 TraesCS4A01G454500 chr4D 91.304 207 14 2 176 379 262025694 262025489 2.240000e-71 279.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G454500 chr4A 718617556 718620505 2949 True 5448.000000 5448 100.000 1 2950 1 chr4A.!!$R1 2949
1 TraesCS4A01G454500 chr4A 718834891 718837176 2285 False 3049.000000 3049 90.917 675 2944 1 chr4A.!!$F1 2269
2 TraesCS4A01G454500 chr7A 14931576 14933054 1478 False 1607.000000 1607 86.591 697 2164 1 chr7A.!!$F1 1467
3 TraesCS4A01G454500 chr7D 16147065 16151705 4640 False 777.333333 913 88.906 456 2950 3 chr7D.!!$F7 2494
4 TraesCS4A01G454500 chr7D 26503880 26504440 560 False 542.000000 542 84.083 783 1360 1 chr7D.!!$F4 577
5 TraesCS4A01G454500 chr7D 3103482 3104091 609 False 512.000000 512 81.906 2178 2793 1 chr7D.!!$F1 615
6 TraesCS4A01G454500 chr7D 3159677 3160286 609 True 512.000000 512 81.906 2178 2793 1 chr7D.!!$R1 615
7 TraesCS4A01G454500 chr3D 584703712 584704464 752 True 878.000000 878 87.696 2189 2950 1 chr3D.!!$R3 761
8 TraesCS4A01G454500 chr3D 584711124 584713643 2519 True 754.000000 865 86.897 456 2043 2 chr3D.!!$R4 1587
9 TraesCS4A01G454500 chr1B 453746128 453746661 533 False 464.000000 464 82.428 2178 2727 1 chr1B.!!$F1 549
10 TraesCS4A01G454500 chr5D 352217526 352218161 635 True 346.000000 346 76.899 2165 2797 1 chr5D.!!$R4 632
11 TraesCS4A01G454500 chr2B 49718085 49718697 612 False 375.000000 375 78.219 2163 2777 1 chr2B.!!$F1 614
12 TraesCS4A01G454500 chr6A 30132144 30132654 510 True 370.000000 370 80.076 2165 2683 1 chr6A.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.036022 GGAGGGAGTAGGCATGATGC 59.964 60.0 9.33 9.33 44.08 3.91 F
291 292 0.040157 CCAAACACGACATGCAGTGG 60.040 55.0 20.60 3.36 42.25 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 2762 0.179000 AGGTGGCCTATTGCTTCGAG 59.821 55.0 3.32 0.0 40.92 4.04 R
1973 2989 0.748005 AAGGCGAGCACAACAACAGT 60.748 50.0 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.883731 GCTAAGTGCATGTAGAAATTAAGAAGA 58.116 33.333 10.04 0.00 42.31 2.87
29 30 9.453572 AAGTGCATGTAGAAATTAAGAAGATCA 57.546 29.630 0.00 0.00 0.00 2.92
30 31 9.624373 AGTGCATGTAGAAATTAAGAAGATCAT 57.376 29.630 0.00 0.00 0.00 2.45
31 32 9.661187 GTGCATGTAGAAATTAAGAAGATCATG 57.339 33.333 0.00 0.00 34.19 3.07
32 33 9.399797 TGCATGTAGAAATTAAGAAGATCATGT 57.600 29.630 0.00 0.00 33.78 3.21
33 34 9.661187 GCATGTAGAAATTAAGAAGATCATGTG 57.339 33.333 0.00 0.00 33.78 3.21
42 43 9.624373 AATTAAGAAGATCATGTGTAGATTGCT 57.376 29.630 0.00 0.00 0.00 3.91
46 47 8.604640 AGAAGATCATGTGTAGATTGCTATTG 57.395 34.615 0.00 0.00 0.00 1.90
47 48 7.660617 AGAAGATCATGTGTAGATTGCTATTGG 59.339 37.037 0.00 0.00 0.00 3.16
48 49 6.835174 AGATCATGTGTAGATTGCTATTGGT 58.165 36.000 0.00 0.00 0.00 3.67
49 50 6.933521 AGATCATGTGTAGATTGCTATTGGTC 59.066 38.462 0.00 0.00 0.00 4.02
50 51 6.239217 TCATGTGTAGATTGCTATTGGTCT 57.761 37.500 0.00 0.00 0.00 3.85
51 52 6.653020 TCATGTGTAGATTGCTATTGGTCTT 58.347 36.000 0.00 0.00 0.00 3.01
52 53 6.539826 TCATGTGTAGATTGCTATTGGTCTTG 59.460 38.462 0.00 0.00 0.00 3.02
53 54 5.185454 TGTGTAGATTGCTATTGGTCTTGG 58.815 41.667 0.00 0.00 0.00 3.61
54 55 5.186198 GTGTAGATTGCTATTGGTCTTGGT 58.814 41.667 0.00 0.00 0.00 3.67
55 56 5.648092 GTGTAGATTGCTATTGGTCTTGGTT 59.352 40.000 0.00 0.00 0.00 3.67
56 57 6.821665 GTGTAGATTGCTATTGGTCTTGGTTA 59.178 38.462 0.00 0.00 0.00 2.85
57 58 6.821665 TGTAGATTGCTATTGGTCTTGGTTAC 59.178 38.462 0.00 0.00 0.00 2.50
58 59 5.193679 AGATTGCTATTGGTCTTGGTTACC 58.806 41.667 0.00 0.00 37.53 2.85
59 60 2.980568 TGCTATTGGTCTTGGTTACCG 58.019 47.619 0.00 0.00 40.08 4.02
60 61 2.303600 TGCTATTGGTCTTGGTTACCGT 59.696 45.455 0.00 0.00 40.08 4.83
61 62 2.676342 GCTATTGGTCTTGGTTACCGTG 59.324 50.000 0.00 0.00 40.08 4.94
62 63 2.943036 ATTGGTCTTGGTTACCGTGT 57.057 45.000 0.00 0.00 40.08 4.49
63 64 1.956297 TTGGTCTTGGTTACCGTGTG 58.044 50.000 0.00 0.00 40.08 3.82
64 65 1.121378 TGGTCTTGGTTACCGTGTGA 58.879 50.000 0.00 0.00 40.08 3.58
65 66 1.695242 TGGTCTTGGTTACCGTGTGAT 59.305 47.619 0.00 0.00 40.08 3.06
66 67 2.073816 GGTCTTGGTTACCGTGTGATG 58.926 52.381 0.00 0.00 0.00 3.07
67 68 2.289195 GGTCTTGGTTACCGTGTGATGA 60.289 50.000 0.00 0.00 0.00 2.92
68 69 2.993899 GTCTTGGTTACCGTGTGATGAG 59.006 50.000 0.00 0.00 0.00 2.90
69 70 2.894765 TCTTGGTTACCGTGTGATGAGA 59.105 45.455 0.00 0.00 0.00 3.27
70 71 3.056821 TCTTGGTTACCGTGTGATGAGAG 60.057 47.826 0.00 0.00 0.00 3.20
71 72 2.521126 TGGTTACCGTGTGATGAGAGA 58.479 47.619 0.00 0.00 0.00 3.10
72 73 2.492088 TGGTTACCGTGTGATGAGAGAG 59.508 50.000 0.00 0.00 0.00 3.20
73 74 2.753452 GGTTACCGTGTGATGAGAGAGA 59.247 50.000 0.00 0.00 0.00 3.10
74 75 3.192844 GGTTACCGTGTGATGAGAGAGAA 59.807 47.826 0.00 0.00 0.00 2.87
75 76 4.142138 GGTTACCGTGTGATGAGAGAGAAT 60.142 45.833 0.00 0.00 0.00 2.40
76 77 5.411781 GTTACCGTGTGATGAGAGAGAATT 58.588 41.667 0.00 0.00 0.00 2.17
77 78 6.405508 GGTTACCGTGTGATGAGAGAGAATTA 60.406 42.308 0.00 0.00 0.00 1.40
78 79 5.860941 ACCGTGTGATGAGAGAGAATTAT 57.139 39.130 0.00 0.00 0.00 1.28
79 80 6.227298 ACCGTGTGATGAGAGAGAATTATT 57.773 37.500 0.00 0.00 0.00 1.40
80 81 6.644347 ACCGTGTGATGAGAGAGAATTATTT 58.356 36.000 0.00 0.00 0.00 1.40
81 82 7.106239 ACCGTGTGATGAGAGAGAATTATTTT 58.894 34.615 0.00 0.00 0.00 1.82
82 83 7.607991 ACCGTGTGATGAGAGAGAATTATTTTT 59.392 33.333 0.00 0.00 0.00 1.94
103 104 6.874288 TTTTCCCACTTTAAAATGCATTGG 57.126 33.333 13.82 8.55 0.00 3.16
104 105 4.550076 TCCCACTTTAAAATGCATTGGG 57.450 40.909 20.12 20.12 43.21 4.12
105 106 4.550076 CCCACTTTAAAATGCATTGGGA 57.450 40.909 21.17 4.54 44.41 4.37
106 107 4.594920 TCCCACTTTAAAATGCATTGGGAA 59.405 37.500 24.49 12.19 46.61 3.97
107 108 4.937015 CCCACTTTAAAATGCATTGGGAAG 59.063 41.667 21.17 20.12 44.41 3.46
108 109 5.279910 CCCACTTTAAAATGCATTGGGAAGA 60.280 40.000 21.17 3.14 44.41 2.87
109 110 6.408869 CCACTTTAAAATGCATTGGGAAGAT 58.591 36.000 24.20 12.76 0.00 2.40
110 111 7.364585 CCCACTTTAAAATGCATTGGGAAGATA 60.365 37.037 21.17 2.11 44.41 1.98
111 112 7.707893 CCACTTTAAAATGCATTGGGAAGATAG 59.292 37.037 24.20 16.58 0.00 2.08
112 113 8.469200 CACTTTAAAATGCATTGGGAAGATAGA 58.531 33.333 24.20 3.93 0.00 1.98
113 114 9.034800 ACTTTAAAATGCATTGGGAAGATAGAA 57.965 29.630 24.20 6.95 0.00 2.10
114 115 9.525409 CTTTAAAATGCATTGGGAAGATAGAAG 57.475 33.333 13.82 2.86 0.00 2.85
115 116 8.593945 TTAAAATGCATTGGGAAGATAGAAGT 57.406 30.769 13.82 0.00 0.00 3.01
116 117 9.693739 TTAAAATGCATTGGGAAGATAGAAGTA 57.306 29.630 13.82 0.00 0.00 2.24
117 118 7.573968 AAATGCATTGGGAAGATAGAAGTAC 57.426 36.000 13.82 0.00 0.00 2.73
118 119 5.692115 TGCATTGGGAAGATAGAAGTACA 57.308 39.130 0.00 0.00 0.00 2.90
119 120 5.428253 TGCATTGGGAAGATAGAAGTACAC 58.572 41.667 0.00 0.00 0.00 2.90
120 121 5.189736 TGCATTGGGAAGATAGAAGTACACT 59.810 40.000 0.00 0.00 0.00 3.55
121 122 5.755861 GCATTGGGAAGATAGAAGTACACTC 59.244 44.000 0.00 0.00 0.00 3.51
122 123 6.407525 GCATTGGGAAGATAGAAGTACACTCT 60.408 42.308 0.00 0.00 0.00 3.24
123 124 7.560368 CATTGGGAAGATAGAAGTACACTCTT 58.440 38.462 3.13 0.20 0.00 2.85
124 125 7.554959 TTGGGAAGATAGAAGTACACTCTTT 57.445 36.000 3.13 0.00 0.00 2.52
125 126 7.554959 TGGGAAGATAGAAGTACACTCTTTT 57.445 36.000 3.13 0.00 0.00 2.27
126 127 7.386851 TGGGAAGATAGAAGTACACTCTTTTG 58.613 38.462 3.13 0.00 0.00 2.44
127 128 7.016268 TGGGAAGATAGAAGTACACTCTTTTGT 59.984 37.037 3.13 0.00 0.00 2.83
128 129 7.332182 GGGAAGATAGAAGTACACTCTTTTGTG 59.668 40.741 3.13 0.00 43.07 3.33
129 130 7.332182 GGAAGATAGAAGTACACTCTTTTGTGG 59.668 40.741 3.13 0.00 41.84 4.17
130 131 7.540474 AGATAGAAGTACACTCTTTTGTGGA 57.460 36.000 3.13 0.00 41.84 4.02
131 132 8.140112 AGATAGAAGTACACTCTTTTGTGGAT 57.860 34.615 3.13 0.00 41.84 3.41
132 133 9.256228 AGATAGAAGTACACTCTTTTGTGGATA 57.744 33.333 3.13 0.00 41.84 2.59
133 134 9.871238 GATAGAAGTACACTCTTTTGTGGATAA 57.129 33.333 3.13 0.00 41.84 1.75
136 137 9.574516 AGAAGTACACTCTTTTGTGGATAAATT 57.425 29.630 0.00 0.00 41.84 1.82
160 161 9.944376 ATTTTAAAGCTAGATGTACACTCTTCA 57.056 29.630 0.00 0.00 0.00 3.02
161 162 8.758633 TTTAAAGCTAGATGTACACTCTTCAC 57.241 34.615 0.00 0.00 0.00 3.18
162 163 4.993029 AGCTAGATGTACACTCTTCACC 57.007 45.455 0.00 0.00 0.00 4.02
163 164 3.378742 AGCTAGATGTACACTCTTCACCG 59.621 47.826 0.00 0.00 0.00 4.94
164 165 3.489398 GCTAGATGTACACTCTTCACCGG 60.489 52.174 0.00 0.00 0.00 5.28
165 166 2.803956 AGATGTACACTCTTCACCGGA 58.196 47.619 9.46 0.00 0.00 5.14
166 167 2.492484 AGATGTACACTCTTCACCGGAC 59.508 50.000 9.46 0.00 0.00 4.79
167 168 0.594602 TGTACACTCTTCACCGGACG 59.405 55.000 9.46 0.00 0.00 4.79
168 169 0.109412 GTACACTCTTCACCGGACGG 60.109 60.000 9.46 9.56 42.03 4.79
169 170 0.250858 TACACTCTTCACCGGACGGA 60.251 55.000 18.80 0.00 38.96 4.69
170 171 1.213013 CACTCTTCACCGGACGGAG 59.787 63.158 18.80 10.03 38.96 4.63
171 172 1.977544 ACTCTTCACCGGACGGAGG 60.978 63.158 18.80 9.15 38.96 4.30
172 173 2.678934 TCTTCACCGGACGGAGGG 60.679 66.667 18.80 6.62 38.96 4.30
173 174 2.678934 CTTCACCGGACGGAGGGA 60.679 66.667 18.80 8.89 38.96 4.20
174 175 2.678934 TTCACCGGACGGAGGGAG 60.679 66.667 18.80 2.08 38.96 4.30
175 176 3.518552 TTCACCGGACGGAGGGAGT 62.519 63.158 18.80 0.00 38.96 3.85
176 177 2.044650 CACCGGACGGAGGGAGTA 60.045 66.667 18.80 0.00 38.96 2.59
177 178 2.119655 CACCGGACGGAGGGAGTAG 61.120 68.421 18.80 0.00 38.96 2.57
178 179 2.518825 CCGGACGGAGGGAGTAGG 60.519 72.222 4.40 0.00 37.50 3.18
179 180 3.217743 CGGACGGAGGGAGTAGGC 61.218 72.222 0.00 0.00 0.00 3.93
180 181 2.043248 GGACGGAGGGAGTAGGCA 60.043 66.667 0.00 0.00 0.00 4.75
181 182 1.457831 GGACGGAGGGAGTAGGCAT 60.458 63.158 0.00 0.00 0.00 4.40
182 183 1.742768 GACGGAGGGAGTAGGCATG 59.257 63.158 0.00 0.00 0.00 4.06
183 184 0.755698 GACGGAGGGAGTAGGCATGA 60.756 60.000 0.00 0.00 0.00 3.07
184 185 0.105453 ACGGAGGGAGTAGGCATGAT 60.105 55.000 0.00 0.00 0.00 2.45
185 186 0.319728 CGGAGGGAGTAGGCATGATG 59.680 60.000 0.00 0.00 0.00 3.07
186 187 0.036022 GGAGGGAGTAGGCATGATGC 59.964 60.000 9.33 9.33 44.08 3.91
198 199 3.360249 GCATGATGCATTAACTCCCAC 57.640 47.619 13.36 0.00 44.26 4.61
199 200 2.035066 GCATGATGCATTAACTCCCACC 59.965 50.000 13.36 0.00 44.26 4.61
200 201 3.559069 CATGATGCATTAACTCCCACCT 58.441 45.455 0.00 0.00 0.00 4.00
201 202 3.281727 TGATGCATTAACTCCCACCTC 57.718 47.619 0.00 0.00 0.00 3.85
202 203 2.213499 GATGCATTAACTCCCACCTCG 58.787 52.381 0.00 0.00 0.00 4.63
203 204 0.981183 TGCATTAACTCCCACCTCGT 59.019 50.000 0.00 0.00 0.00 4.18
204 205 1.349688 TGCATTAACTCCCACCTCGTT 59.650 47.619 0.00 0.00 0.00 3.85
205 206 2.224670 TGCATTAACTCCCACCTCGTTT 60.225 45.455 0.00 0.00 0.00 3.60
206 207 2.418976 GCATTAACTCCCACCTCGTTTC 59.581 50.000 0.00 0.00 0.00 2.78
207 208 3.868754 GCATTAACTCCCACCTCGTTTCT 60.869 47.826 0.00 0.00 0.00 2.52
208 209 4.324267 CATTAACTCCCACCTCGTTTCTT 58.676 43.478 0.00 0.00 0.00 2.52
209 210 2.256117 AACTCCCACCTCGTTTCTTG 57.744 50.000 0.00 0.00 0.00 3.02
210 211 1.129058 ACTCCCACCTCGTTTCTTGT 58.871 50.000 0.00 0.00 0.00 3.16
211 212 1.489230 ACTCCCACCTCGTTTCTTGTT 59.511 47.619 0.00 0.00 0.00 2.83
212 213 2.092592 ACTCCCACCTCGTTTCTTGTTT 60.093 45.455 0.00 0.00 0.00 2.83
213 214 2.548480 CTCCCACCTCGTTTCTTGTTTC 59.452 50.000 0.00 0.00 0.00 2.78
214 215 2.092861 TCCCACCTCGTTTCTTGTTTCA 60.093 45.455 0.00 0.00 0.00 2.69
215 216 2.884639 CCCACCTCGTTTCTTGTTTCAT 59.115 45.455 0.00 0.00 0.00 2.57
216 217 3.304659 CCCACCTCGTTTCTTGTTTCATG 60.305 47.826 0.00 0.00 0.00 3.07
217 218 3.563808 CCACCTCGTTTCTTGTTTCATGA 59.436 43.478 0.00 0.00 0.00 3.07
218 219 4.527564 CACCTCGTTTCTTGTTTCATGAC 58.472 43.478 0.00 0.00 0.00 3.06
219 220 4.035091 CACCTCGTTTCTTGTTTCATGACA 59.965 41.667 0.00 0.00 0.00 3.58
220 221 4.821805 ACCTCGTTTCTTGTTTCATGACAT 59.178 37.500 0.00 0.00 0.00 3.06
221 222 5.995282 ACCTCGTTTCTTGTTTCATGACATA 59.005 36.000 0.00 0.00 0.00 2.29
222 223 6.655003 ACCTCGTTTCTTGTTTCATGACATAT 59.345 34.615 0.00 0.00 0.00 1.78
223 224 7.148407 ACCTCGTTTCTTGTTTCATGACATATC 60.148 37.037 0.00 0.00 0.00 1.63
224 225 7.148423 CCTCGTTTCTTGTTTCATGACATATCA 60.148 37.037 0.00 0.00 39.83 2.15
225 226 8.093659 TCGTTTCTTGTTTCATGACATATCAA 57.906 30.769 0.00 0.00 38.69 2.57
226 227 8.015087 TCGTTTCTTGTTTCATGACATATCAAC 58.985 33.333 0.00 0.00 38.69 3.18
227 228 7.271223 CGTTTCTTGTTTCATGACATATCAACC 59.729 37.037 0.00 0.00 38.69 3.77
228 229 7.757941 TTCTTGTTTCATGACATATCAACCA 57.242 32.000 0.00 0.00 38.69 3.67
229 230 7.757941 TCTTGTTTCATGACATATCAACCAA 57.242 32.000 0.00 0.00 38.69 3.67
230 231 8.352137 TCTTGTTTCATGACATATCAACCAAT 57.648 30.769 0.00 0.00 38.69 3.16
231 232 9.460019 TCTTGTTTCATGACATATCAACCAATA 57.540 29.630 0.00 0.00 38.69 1.90
234 235 9.460019 TGTTTCATGACATATCAACCAATAAGA 57.540 29.630 0.00 0.00 38.69 2.10
235 236 9.941664 GTTTCATGACATATCAACCAATAAGAG 57.058 33.333 0.00 0.00 38.69 2.85
236 237 9.904198 TTTCATGACATATCAACCAATAAGAGA 57.096 29.630 0.00 0.00 38.69 3.10
238 239 9.498176 TCATGACATATCAACCAATAAGAGATG 57.502 33.333 0.00 0.00 38.69 2.90
239 240 9.281371 CATGACATATCAACCAATAAGAGATGT 57.719 33.333 0.00 0.00 44.20 3.06
240 241 8.667076 TGACATATCAACCAATAAGAGATGTG 57.333 34.615 6.64 0.00 42.33 3.21
241 242 7.716560 TGACATATCAACCAATAAGAGATGTGG 59.283 37.037 6.64 0.00 42.33 4.17
242 243 7.000472 ACATATCAACCAATAAGAGATGTGGG 59.000 38.462 0.00 0.00 41.18 4.61
243 244 4.235079 TCAACCAATAAGAGATGTGGGG 57.765 45.455 0.00 0.00 35.32 4.96
244 245 2.689983 CAACCAATAAGAGATGTGGGGC 59.310 50.000 0.00 0.00 35.32 5.80
245 246 1.134098 ACCAATAAGAGATGTGGGGCG 60.134 52.381 0.00 0.00 35.32 6.13
246 247 1.134098 CCAATAAGAGATGTGGGGCGT 60.134 52.381 0.00 0.00 0.00 5.68
247 248 1.942657 CAATAAGAGATGTGGGGCGTG 59.057 52.381 0.00 0.00 0.00 5.34
248 249 0.179045 ATAAGAGATGTGGGGCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
249 250 1.549243 TAAGAGATGTGGGGCGTGCA 61.549 55.000 0.00 0.00 0.00 4.57
250 251 2.124570 GAGATGTGGGGCGTGCAT 60.125 61.111 0.00 0.00 0.00 3.96
251 252 2.438975 AGATGTGGGGCGTGCATG 60.439 61.111 0.09 0.09 0.00 4.06
252 253 4.197498 GATGTGGGGCGTGCATGC 62.197 66.667 22.99 22.99 0.00 4.06
253 254 4.746309 ATGTGGGGCGTGCATGCT 62.746 61.111 28.89 6.56 34.52 3.79
254 255 4.972733 TGTGGGGCGTGCATGCTT 62.973 61.111 28.89 0.00 34.52 3.91
255 256 3.683937 GTGGGGCGTGCATGCTTT 61.684 61.111 28.89 0.00 34.52 3.51
256 257 3.372730 TGGGGCGTGCATGCTTTC 61.373 61.111 28.89 18.40 34.52 2.62
257 258 3.372730 GGGGCGTGCATGCTTTCA 61.373 61.111 28.89 0.00 34.52 2.69
258 259 2.650196 GGGCGTGCATGCTTTCAA 59.350 55.556 28.89 0.00 34.52 2.69
259 260 1.216178 GGGCGTGCATGCTTTCAAT 59.784 52.632 28.89 0.00 34.52 2.57
260 261 0.803380 GGGCGTGCATGCTTTCAATC 60.803 55.000 28.89 11.32 34.52 2.67
261 262 0.109179 GGCGTGCATGCTTTCAATCA 60.109 50.000 28.89 0.00 34.52 2.57
262 263 0.986992 GCGTGCATGCTTTCAATCAC 59.013 50.000 23.72 4.81 0.00 3.06
263 264 1.401931 GCGTGCATGCTTTCAATCACT 60.402 47.619 23.72 0.00 0.00 3.41
264 265 2.923605 GCGTGCATGCTTTCAATCACTT 60.924 45.455 23.72 0.00 0.00 3.16
265 266 2.659757 CGTGCATGCTTTCAATCACTTG 59.340 45.455 20.33 0.00 0.00 3.16
266 267 3.609879 CGTGCATGCTTTCAATCACTTGA 60.610 43.478 20.33 0.00 39.62 3.02
267 268 3.918591 GTGCATGCTTTCAATCACTTGAG 59.081 43.478 20.33 0.00 42.19 3.02
268 269 3.822167 TGCATGCTTTCAATCACTTGAGA 59.178 39.130 20.33 0.00 42.19 3.27
269 270 4.164294 GCATGCTTTCAATCACTTGAGAC 58.836 43.478 11.37 0.00 42.19 3.36
270 271 4.082895 GCATGCTTTCAATCACTTGAGACT 60.083 41.667 11.37 0.00 42.19 3.24
271 272 5.122869 GCATGCTTTCAATCACTTGAGACTA 59.877 40.000 11.37 0.00 42.19 2.59
272 273 6.541086 CATGCTTTCAATCACTTGAGACTAC 58.459 40.000 0.00 0.00 42.19 2.73
273 274 4.997395 TGCTTTCAATCACTTGAGACTACC 59.003 41.667 0.00 0.00 42.19 3.18
274 275 4.997395 GCTTTCAATCACTTGAGACTACCA 59.003 41.667 0.00 0.00 42.19 3.25
275 276 5.470098 GCTTTCAATCACTTGAGACTACCAA 59.530 40.000 0.00 0.00 42.19 3.67
276 277 6.017109 GCTTTCAATCACTTGAGACTACCAAA 60.017 38.462 0.00 0.00 42.19 3.28
277 278 6.861065 TTCAATCACTTGAGACTACCAAAC 57.139 37.500 0.00 0.00 42.19 2.93
278 279 5.924356 TCAATCACTTGAGACTACCAAACA 58.076 37.500 0.00 0.00 36.46 2.83
279 280 5.758296 TCAATCACTTGAGACTACCAAACAC 59.242 40.000 0.00 0.00 36.46 3.32
280 281 3.713288 TCACTTGAGACTACCAAACACG 58.287 45.455 0.00 0.00 0.00 4.49
281 282 3.382227 TCACTTGAGACTACCAAACACGA 59.618 43.478 0.00 0.00 0.00 4.35
282 283 3.489785 CACTTGAGACTACCAAACACGAC 59.510 47.826 0.00 0.00 0.00 4.34
283 284 3.131577 ACTTGAGACTACCAAACACGACA 59.868 43.478 0.00 0.00 0.00 4.35
284 285 4.202223 ACTTGAGACTACCAAACACGACAT 60.202 41.667 0.00 0.00 0.00 3.06
285 286 3.649073 TGAGACTACCAAACACGACATG 58.351 45.455 0.00 0.00 0.00 3.21
286 287 2.412089 GAGACTACCAAACACGACATGC 59.588 50.000 0.00 0.00 0.00 4.06
287 288 2.139917 GACTACCAAACACGACATGCA 58.860 47.619 0.00 0.00 0.00 3.96
288 289 2.143122 ACTACCAAACACGACATGCAG 58.857 47.619 0.00 0.00 0.00 4.41
289 290 2.143122 CTACCAAACACGACATGCAGT 58.857 47.619 0.00 0.00 0.00 4.40
290 291 0.662619 ACCAAACACGACATGCAGTG 59.337 50.000 16.62 16.62 43.46 3.66
291 292 0.040157 CCAAACACGACATGCAGTGG 60.040 55.000 20.60 3.36 42.25 4.00
292 293 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
293 294 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
294 295 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
295 296 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
296 297 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
297 298 2.297880 ACACGACATGCAGTGGTTAGTA 59.702 45.455 20.60 0.00 42.25 1.82
298 299 2.666508 CACGACATGCAGTGGTTAGTAC 59.333 50.000 11.93 0.00 37.03 2.73
299 300 2.297880 ACGACATGCAGTGGTTAGTACA 59.702 45.455 0.00 0.00 35.47 2.90
300 301 3.056107 ACGACATGCAGTGGTTAGTACAT 60.056 43.478 0.00 0.00 35.47 2.29
301 302 3.932710 CGACATGCAGTGGTTAGTACATT 59.067 43.478 0.00 0.00 0.00 2.71
302 303 4.201714 CGACATGCAGTGGTTAGTACATTG 60.202 45.833 0.00 0.00 0.00 2.82
306 307 4.019919 GCAGTGGTTAGTACATTGCATG 57.980 45.455 7.83 0.00 46.71 4.06
307 308 3.731867 GCAGTGGTTAGTACATTGCATGC 60.732 47.826 11.82 11.82 46.71 4.06
308 309 3.439825 CAGTGGTTAGTACATTGCATGCA 59.560 43.478 18.46 18.46 0.00 3.96
309 310 4.078537 AGTGGTTAGTACATTGCATGCAA 58.921 39.130 33.57 33.57 40.47 4.08
310 311 4.706476 AGTGGTTAGTACATTGCATGCAAT 59.294 37.500 34.78 34.78 46.35 3.56
342 343 7.763172 AGCAGATAAACATTAAGTTCTCTCG 57.237 36.000 0.00 0.00 40.26 4.04
343 344 7.324178 AGCAGATAAACATTAAGTTCTCTCGT 58.676 34.615 0.00 0.00 40.26 4.18
344 345 7.819900 AGCAGATAAACATTAAGTTCTCTCGTT 59.180 33.333 0.00 0.00 40.26 3.85
345 346 8.443937 GCAGATAAACATTAAGTTCTCTCGTTT 58.556 33.333 0.00 0.00 40.26 3.60
348 349 9.756461 GATAAACATTAAGTTCTCTCGTTTTCC 57.244 33.333 0.00 0.00 40.26 3.13
349 350 6.555812 AACATTAAGTTCTCTCGTTTTCCC 57.444 37.500 0.00 0.00 34.74 3.97
350 351 5.001874 ACATTAAGTTCTCTCGTTTTCCCC 58.998 41.667 0.00 0.00 0.00 4.81
351 352 4.968971 TTAAGTTCTCTCGTTTTCCCCT 57.031 40.909 0.00 0.00 0.00 4.79
352 353 3.404224 AAGTTCTCTCGTTTTCCCCTC 57.596 47.619 0.00 0.00 0.00 4.30
353 354 1.624312 AGTTCTCTCGTTTTCCCCTCC 59.376 52.381 0.00 0.00 0.00 4.30
354 355 1.624312 GTTCTCTCGTTTTCCCCTCCT 59.376 52.381 0.00 0.00 0.00 3.69
355 356 1.558233 TCTCTCGTTTTCCCCTCCTC 58.442 55.000 0.00 0.00 0.00 3.71
356 357 0.537653 CTCTCGTTTTCCCCTCCTCC 59.462 60.000 0.00 0.00 0.00 4.30
357 358 0.908180 TCTCGTTTTCCCCTCCTCCC 60.908 60.000 0.00 0.00 0.00 4.30
358 359 1.911702 CTCGTTTTCCCCTCCTCCCC 61.912 65.000 0.00 0.00 0.00 4.81
359 360 2.675371 GTTTTCCCCTCCTCCCCG 59.325 66.667 0.00 0.00 0.00 5.73
360 361 2.612746 TTTTCCCCTCCTCCCCGG 60.613 66.667 0.00 0.00 0.00 5.73
361 362 3.510432 TTTTCCCCTCCTCCCCGGT 62.510 63.158 0.00 0.00 0.00 5.28
362 363 3.937372 TTTCCCCTCCTCCCCGGTC 62.937 68.421 0.00 0.00 0.00 4.79
364 365 4.499116 CCCCTCCTCCCCGGTCAT 62.499 72.222 0.00 0.00 0.00 3.06
365 366 3.164269 CCCTCCTCCCCGGTCATG 61.164 72.222 0.00 0.00 0.00 3.07
366 367 3.164269 CCTCCTCCCCGGTCATGG 61.164 72.222 0.00 0.00 0.00 3.66
367 368 2.365635 CTCCTCCCCGGTCATGGT 60.366 66.667 0.00 0.00 0.00 3.55
368 369 2.687200 TCCTCCCCGGTCATGGTG 60.687 66.667 0.00 0.00 0.00 4.17
369 370 4.489771 CCTCCCCGGTCATGGTGC 62.490 72.222 0.00 0.00 0.00 5.01
370 371 3.716195 CTCCCCGGTCATGGTGCA 61.716 66.667 0.00 0.00 0.00 4.57
371 372 3.976701 CTCCCCGGTCATGGTGCAC 62.977 68.421 8.80 8.80 0.00 4.57
372 373 4.343323 CCCCGGTCATGGTGCACA 62.343 66.667 20.43 5.24 0.00 4.57
373 374 2.282110 CCCGGTCATGGTGCACAA 60.282 61.111 20.43 8.12 0.00 3.33
374 375 2.625823 CCCGGTCATGGTGCACAAC 61.626 63.158 20.43 10.47 0.00 3.32
388 389 6.267496 GGTGCACAACCTAATAAATCAACT 57.733 37.500 20.43 0.00 46.55 3.16
389 390 7.385778 GGTGCACAACCTAATAAATCAACTA 57.614 36.000 20.43 0.00 46.55 2.24
390 391 7.248437 GGTGCACAACCTAATAAATCAACTAC 58.752 38.462 20.43 0.00 46.55 2.73
391 392 7.094549 GGTGCACAACCTAATAAATCAACTACA 60.095 37.037 20.43 0.00 46.55 2.74
392 393 8.458843 GTGCACAACCTAATAAATCAACTACAT 58.541 33.333 13.17 0.00 0.00 2.29
393 394 9.674068 TGCACAACCTAATAAATCAACTACATA 57.326 29.630 0.00 0.00 0.00 2.29
439 440 8.346300 ACATATGAGTTCTCATCTACTTACACG 58.654 37.037 17.04 0.00 0.00 4.49
440 441 6.761099 ATGAGTTCTCATCTACTTACACGT 57.239 37.500 9.22 0.00 0.00 4.49
441 442 6.179504 TGAGTTCTCATCTACTTACACGTC 57.820 41.667 0.00 0.00 0.00 4.34
442 443 5.938710 TGAGTTCTCATCTACTTACACGTCT 59.061 40.000 0.00 0.00 0.00 4.18
443 444 7.101700 TGAGTTCTCATCTACTTACACGTCTA 58.898 38.462 0.00 0.00 0.00 2.59
444 445 7.769507 TGAGTTCTCATCTACTTACACGTCTAT 59.230 37.037 0.00 0.00 0.00 1.98
445 446 8.508883 AGTTCTCATCTACTTACACGTCTATT 57.491 34.615 0.00 0.00 0.00 1.73
446 447 8.399425 AGTTCTCATCTACTTACACGTCTATTG 58.601 37.037 0.00 0.00 0.00 1.90
447 448 7.260558 TCTCATCTACTTACACGTCTATTGG 57.739 40.000 0.00 0.00 0.00 3.16
448 449 5.828747 TCATCTACTTACACGTCTATTGGC 58.171 41.667 0.00 0.00 0.00 4.52
449 450 5.358725 TCATCTACTTACACGTCTATTGGCA 59.641 40.000 0.00 0.00 0.00 4.92
450 451 5.847111 TCTACTTACACGTCTATTGGCAT 57.153 39.130 0.00 0.00 0.00 4.40
451 452 6.947644 TCTACTTACACGTCTATTGGCATA 57.052 37.500 0.00 0.00 0.00 3.14
452 453 7.337480 TCTACTTACACGTCTATTGGCATAA 57.663 36.000 0.00 0.00 0.00 1.90
453 454 7.948357 TCTACTTACACGTCTATTGGCATAAT 58.052 34.615 0.00 0.00 0.00 1.28
454 455 8.418662 TCTACTTACACGTCTATTGGCATAATT 58.581 33.333 0.00 0.00 0.00 1.40
468 469 4.520111 TGGCATAATTTCAATCCGATCTGG 59.480 41.667 0.00 0.00 40.09 3.86
479 480 6.103997 TCAATCCGATCTGGTACTTTTACAC 58.896 40.000 0.00 0.00 39.52 2.90
491 492 9.180678 CTGGTACTTTTACACATTCAACATTTC 57.819 33.333 0.00 0.00 0.00 2.17
525 526 6.721208 TCAGAGCATTTCCCTACTGAATTTTT 59.279 34.615 0.00 0.00 32.66 1.94
571 573 1.877637 TGATGACGCGGAAATATGGG 58.122 50.000 12.47 0.00 0.00 4.00
574 576 2.404923 TGACGCGGAAATATGGGAAA 57.595 45.000 12.47 0.00 0.00 3.13
651 653 9.474313 ACTAAATTATTAGCTGATTTCCAACCA 57.526 29.630 0.00 0.00 41.92 3.67
659 661 0.740737 GATTTCCAACCATGCCCTCG 59.259 55.000 0.00 0.00 0.00 4.63
758 763 7.439356 CAGACATGGATCAATCGTACACTTATT 59.561 37.037 0.00 0.00 0.00 1.40
837 876 2.224305 GGTTGGATAGGGATCGTGGAAG 60.224 54.545 0.00 0.00 32.28 3.46
1280 1321 2.765807 CGCCTCCATCCTCCCTGT 60.766 66.667 0.00 0.00 0.00 4.00
1331 1372 2.338984 GGCCGCCTACGTGGATAG 59.661 66.667 0.71 0.00 42.83 2.08
1441 1486 1.065600 GGTTGCGTGCATTGTGTGT 59.934 52.632 0.00 0.00 0.00 3.72
1477 1522 5.348724 TGAACATTCGCTCTGAGTTGTATTC 59.651 40.000 6.53 5.00 0.00 1.75
1485 1530 5.809562 CGCTCTGAGTTGTATTCTCTTCAAT 59.190 40.000 6.53 0.00 33.59 2.57
1559 2575 0.532862 CACAGCTGTTCCCTTCGTGT 60.533 55.000 18.94 0.00 0.00 4.49
1589 2605 1.600636 CAAGACAGGGAAGCCGCAA 60.601 57.895 0.00 0.00 0.00 4.85
1590 2606 1.600916 AAGACAGGGAAGCCGCAAC 60.601 57.895 0.00 0.00 0.00 4.17
1622 2638 0.191064 AGGTGGAGGAGACCTTGTCA 59.809 55.000 0.00 0.00 41.31 3.58
1641 2657 1.755008 GCACTCGGGCTCCTAGAGT 60.755 63.158 10.23 10.23 45.07 3.24
1649 2665 1.150992 GCTCCTAGAGTCCGCCCTA 59.849 63.158 0.00 0.00 31.39 3.53
1673 2689 2.557452 GGAATGCTCCAAGAAAGGGGAA 60.557 50.000 0.00 0.00 41.96 3.97
1694 2710 2.358247 GAGGCGCCGTTCTTTGGA 60.358 61.111 23.20 0.00 0.00 3.53
1746 2762 1.757949 GGGAGCTATCTTCCCTGGC 59.242 63.158 3.06 0.00 40.46 4.85
1808 2824 0.037590 ATGCGGCTAGGACACCAAAA 59.962 50.000 0.00 0.00 0.00 2.44
1815 2831 0.847373 TAGGACACCAAAACTGGCCA 59.153 50.000 4.71 4.71 39.64 5.36
1937 2953 3.195002 GCCGCGCTCACTGCATTA 61.195 61.111 5.56 0.00 43.06 1.90
1973 2989 3.030168 ATGCCGCCTCGTTCCATCA 62.030 57.895 0.00 0.00 0.00 3.07
1980 2996 1.878102 GCCTCGTTCCATCACTGTTGT 60.878 52.381 0.00 0.00 0.00 3.32
2004 3020 3.188460 GTGCTCGCCTTCAAATTCAGTTA 59.812 43.478 0.00 0.00 0.00 2.24
2044 3063 7.375053 TGTGCTCTTTGAACTTTTGTTACTTT 58.625 30.769 0.00 0.00 43.66 2.66
2065 3084 2.094906 TGTTGTTAGGGTCTGATCGTCG 60.095 50.000 0.00 0.00 0.00 5.12
2111 3130 3.366422 GTCTTCGATCTGAGTTTGCTGTC 59.634 47.826 0.00 0.00 0.00 3.51
2123 3142 5.596361 TGAGTTTGCTGTCTTGGGAATAAAA 59.404 36.000 0.00 0.00 0.00 1.52
2160 3179 4.714632 TCTTTGACCGTTTTCTCAAGGAT 58.285 39.130 0.00 0.00 30.05 3.24
2218 4724 9.881529 TTATAAATGTTCACGGAAAGTACAAAC 57.118 29.630 0.00 0.00 0.00 2.93
2222 4728 3.263489 TCACGGAAAGTACAAACCACA 57.737 42.857 0.00 0.00 0.00 4.17
2377 4889 4.115405 GAAGTATTCGTGTGTGTGTGTG 57.885 45.455 0.00 0.00 34.17 3.82
2378 4890 3.173668 AGTATTCGTGTGTGTGTGTGT 57.826 42.857 0.00 0.00 0.00 3.72
2379 4891 2.863740 AGTATTCGTGTGTGTGTGTGTG 59.136 45.455 0.00 0.00 0.00 3.82
2525 5039 0.324285 GAGCTGGCTGGGATCTATGG 59.676 60.000 0.00 0.00 0.00 2.74
2546 5060 3.341857 CGAAGCTCTGTCTAATACGCT 57.658 47.619 0.00 0.00 0.00 5.07
2570 5084 2.801111 GACGAACAAACTTGAGGAGGAC 59.199 50.000 0.00 0.00 0.00 3.85
2683 5215 1.694693 GCACCAGGAATACCCTCCCTA 60.695 57.143 0.00 0.00 45.60 3.53
2777 5309 1.172812 GCTTTCCCAAGTCGCCTTGT 61.173 55.000 5.37 0.00 45.49 3.16
2882 5414 7.258441 TGTTCTCCTGTCGAGTTCTTAATATG 58.742 38.462 0.00 0.00 39.84 1.78
2887 5419 9.751542 CTCCTGTCGAGTTCTTAATATGTAAAT 57.248 33.333 0.00 0.00 33.51 1.40
2946 5478 9.562408 TGGCACGACAATAAATATAAATAGGAA 57.438 29.630 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.883731 TCTTCTTAATTTCTACATGCACTTAGC 58.116 33.333 0.00 0.00 45.96 3.09
3 4 9.453572 TGATCTTCTTAATTTCTACATGCACTT 57.546 29.630 0.00 0.00 0.00 3.16
4 5 9.624373 ATGATCTTCTTAATTTCTACATGCACT 57.376 29.630 0.00 0.00 0.00 4.40
5 6 9.661187 CATGATCTTCTTAATTTCTACATGCAC 57.339 33.333 0.00 0.00 0.00 4.57
7 8 9.661187 CACATGATCTTCTTAATTTCTACATGC 57.339 33.333 0.00 0.00 36.08 4.06
16 17 9.624373 AGCAATCTACACATGATCTTCTTAATT 57.376 29.630 0.00 0.00 0.00 1.40
20 21 9.053840 CAATAGCAATCTACACATGATCTTCTT 57.946 33.333 0.00 0.00 0.00 2.52
21 22 7.660617 CCAATAGCAATCTACACATGATCTTCT 59.339 37.037 0.00 0.00 0.00 2.85
22 23 7.443575 ACCAATAGCAATCTACACATGATCTTC 59.556 37.037 0.00 0.00 0.00 2.87
23 24 7.285566 ACCAATAGCAATCTACACATGATCTT 58.714 34.615 0.00 0.00 0.00 2.40
24 25 6.835174 ACCAATAGCAATCTACACATGATCT 58.165 36.000 0.00 0.00 0.00 2.75
25 26 6.933521 AGACCAATAGCAATCTACACATGATC 59.066 38.462 0.00 0.00 0.00 2.92
26 27 6.835174 AGACCAATAGCAATCTACACATGAT 58.165 36.000 0.00 0.00 0.00 2.45
27 28 6.239217 AGACCAATAGCAATCTACACATGA 57.761 37.500 0.00 0.00 0.00 3.07
28 29 6.238566 CCAAGACCAATAGCAATCTACACATG 60.239 42.308 0.00 0.00 0.00 3.21
29 30 5.824624 CCAAGACCAATAGCAATCTACACAT 59.175 40.000 0.00 0.00 0.00 3.21
30 31 5.185454 CCAAGACCAATAGCAATCTACACA 58.815 41.667 0.00 0.00 0.00 3.72
31 32 5.186198 ACCAAGACCAATAGCAATCTACAC 58.814 41.667 0.00 0.00 0.00 2.90
32 33 5.435686 ACCAAGACCAATAGCAATCTACA 57.564 39.130 0.00 0.00 0.00 2.74
33 34 6.260271 GGTAACCAAGACCAATAGCAATCTAC 59.740 42.308 0.00 0.00 36.91 2.59
34 35 6.354130 GGTAACCAAGACCAATAGCAATCTA 58.646 40.000 0.00 0.00 36.91 1.98
35 36 5.193679 GGTAACCAAGACCAATAGCAATCT 58.806 41.667 0.00 0.00 36.91 2.40
36 37 4.035208 CGGTAACCAAGACCAATAGCAATC 59.965 45.833 0.00 0.00 36.72 2.67
37 38 3.945285 CGGTAACCAAGACCAATAGCAAT 59.055 43.478 0.00 0.00 36.72 3.56
38 39 3.244630 ACGGTAACCAAGACCAATAGCAA 60.245 43.478 0.00 0.00 36.72 3.91
39 40 2.303600 ACGGTAACCAAGACCAATAGCA 59.696 45.455 0.00 0.00 36.72 3.49
40 41 2.676342 CACGGTAACCAAGACCAATAGC 59.324 50.000 0.00 0.00 36.72 2.97
41 42 3.682858 CACACGGTAACCAAGACCAATAG 59.317 47.826 0.00 0.00 36.72 1.73
42 43 3.324268 TCACACGGTAACCAAGACCAATA 59.676 43.478 0.00 0.00 36.72 1.90
43 44 2.105134 TCACACGGTAACCAAGACCAAT 59.895 45.455 0.00 0.00 36.72 3.16
44 45 1.485480 TCACACGGTAACCAAGACCAA 59.515 47.619 0.00 0.00 36.72 3.67
45 46 1.121378 TCACACGGTAACCAAGACCA 58.879 50.000 0.00 0.00 36.72 4.02
46 47 2.073816 CATCACACGGTAACCAAGACC 58.926 52.381 0.00 0.00 0.00 3.85
47 48 2.993899 CTCATCACACGGTAACCAAGAC 59.006 50.000 0.00 0.00 0.00 3.01
48 49 2.894765 TCTCATCACACGGTAACCAAGA 59.105 45.455 0.00 0.00 0.00 3.02
49 50 3.056821 TCTCTCATCACACGGTAACCAAG 60.057 47.826 0.00 0.00 0.00 3.61
50 51 2.894765 TCTCTCATCACACGGTAACCAA 59.105 45.455 0.00 0.00 0.00 3.67
51 52 2.492088 CTCTCTCATCACACGGTAACCA 59.508 50.000 0.00 0.00 0.00 3.67
52 53 2.753452 TCTCTCTCATCACACGGTAACC 59.247 50.000 0.00 0.00 0.00 2.85
53 54 4.436242 TTCTCTCTCATCACACGGTAAC 57.564 45.455 0.00 0.00 0.00 2.50
54 55 5.661056 AATTCTCTCTCATCACACGGTAA 57.339 39.130 0.00 0.00 0.00 2.85
55 56 6.961360 ATAATTCTCTCTCATCACACGGTA 57.039 37.500 0.00 0.00 0.00 4.02
56 57 5.860941 ATAATTCTCTCTCATCACACGGT 57.139 39.130 0.00 0.00 0.00 4.83
57 58 7.545362 AAAATAATTCTCTCTCATCACACGG 57.455 36.000 0.00 0.00 0.00 4.94
79 80 6.264067 CCCAATGCATTTTAAAGTGGGAAAAA 59.736 34.615 21.17 0.00 46.01 1.94
80 81 5.767168 CCCAATGCATTTTAAAGTGGGAAAA 59.233 36.000 21.17 0.00 46.01 2.29
81 82 5.312079 CCCAATGCATTTTAAAGTGGGAAA 58.688 37.500 21.17 0.00 46.01 3.13
82 83 4.904241 CCCAATGCATTTTAAAGTGGGAA 58.096 39.130 21.17 0.00 46.01 3.97
83 84 4.550076 CCCAATGCATTTTAAAGTGGGA 57.450 40.909 21.17 0.00 46.01 4.37
84 85 4.550076 TCCCAATGCATTTTAAAGTGGG 57.450 40.909 20.12 20.12 44.74 4.61
85 86 5.792741 TCTTCCCAATGCATTTTAAAGTGG 58.207 37.500 9.83 6.78 0.00 4.00
86 87 8.469200 TCTATCTTCCCAATGCATTTTAAAGTG 58.531 33.333 9.83 6.35 0.00 3.16
87 88 8.593945 TCTATCTTCCCAATGCATTTTAAAGT 57.406 30.769 9.83 6.89 0.00 2.66
88 89 9.525409 CTTCTATCTTCCCAATGCATTTTAAAG 57.475 33.333 9.83 12.67 0.00 1.85
89 90 9.034800 ACTTCTATCTTCCCAATGCATTTTAAA 57.965 29.630 9.83 3.25 0.00 1.52
90 91 8.593945 ACTTCTATCTTCCCAATGCATTTTAA 57.406 30.769 9.83 3.58 0.00 1.52
91 92 9.120538 GTACTTCTATCTTCCCAATGCATTTTA 57.879 33.333 9.83 0.00 0.00 1.52
92 93 7.615365 TGTACTTCTATCTTCCCAATGCATTTT 59.385 33.333 9.83 0.00 0.00 1.82
93 94 7.067494 GTGTACTTCTATCTTCCCAATGCATTT 59.933 37.037 9.83 0.00 0.00 2.32
94 95 6.543831 GTGTACTTCTATCTTCCCAATGCATT 59.456 38.462 5.99 5.99 0.00 3.56
95 96 6.058183 GTGTACTTCTATCTTCCCAATGCAT 58.942 40.000 0.00 0.00 0.00 3.96
96 97 5.189736 AGTGTACTTCTATCTTCCCAATGCA 59.810 40.000 0.00 0.00 0.00 3.96
97 98 5.675538 AGTGTACTTCTATCTTCCCAATGC 58.324 41.667 0.00 0.00 0.00 3.56
98 99 7.118496 AGAGTGTACTTCTATCTTCCCAATG 57.882 40.000 0.00 0.00 0.00 2.82
99 100 7.741554 AAGAGTGTACTTCTATCTTCCCAAT 57.258 36.000 0.00 0.00 0.00 3.16
100 101 7.554959 AAAGAGTGTACTTCTATCTTCCCAA 57.445 36.000 0.00 0.00 30.16 4.12
101 102 7.016268 ACAAAAGAGTGTACTTCTATCTTCCCA 59.984 37.037 0.00 0.00 30.16 4.37
102 103 7.332182 CACAAAAGAGTGTACTTCTATCTTCCC 59.668 40.741 0.00 0.00 34.83 3.97
103 104 7.332182 CCACAAAAGAGTGTACTTCTATCTTCC 59.668 40.741 0.00 0.00 37.82 3.46
104 105 8.088981 TCCACAAAAGAGTGTACTTCTATCTTC 58.911 37.037 0.00 0.00 37.82 2.87
105 106 7.963532 TCCACAAAAGAGTGTACTTCTATCTT 58.036 34.615 0.00 0.00 37.82 2.40
106 107 7.540474 TCCACAAAAGAGTGTACTTCTATCT 57.460 36.000 0.00 0.00 37.82 1.98
107 108 9.871238 TTATCCACAAAAGAGTGTACTTCTATC 57.129 33.333 0.00 0.00 37.82 2.08
110 111 9.574516 AATTTATCCACAAAAGAGTGTACTTCT 57.425 29.630 0.00 0.00 37.82 2.85
134 135 9.944376 TGAAGAGTGTACATCTAGCTTTAAAAT 57.056 29.630 0.00 0.00 0.00 1.82
135 136 9.204570 GTGAAGAGTGTACATCTAGCTTTAAAA 57.795 33.333 0.00 0.00 0.00 1.52
136 137 7.817962 GGTGAAGAGTGTACATCTAGCTTTAAA 59.182 37.037 0.00 0.00 0.00 1.52
137 138 7.321153 GGTGAAGAGTGTACATCTAGCTTTAA 58.679 38.462 0.00 0.00 0.00 1.52
138 139 6.404403 CGGTGAAGAGTGTACATCTAGCTTTA 60.404 42.308 0.00 0.00 0.00 1.85
139 140 5.622460 CGGTGAAGAGTGTACATCTAGCTTT 60.622 44.000 0.00 0.00 0.00 3.51
140 141 4.142359 CGGTGAAGAGTGTACATCTAGCTT 60.142 45.833 0.00 0.00 0.00 3.74
141 142 3.378742 CGGTGAAGAGTGTACATCTAGCT 59.621 47.826 0.00 0.00 0.00 3.32
142 143 3.489398 CCGGTGAAGAGTGTACATCTAGC 60.489 52.174 0.00 0.00 0.00 3.42
143 144 3.945921 TCCGGTGAAGAGTGTACATCTAG 59.054 47.826 0.00 0.00 0.00 2.43
144 145 3.693085 GTCCGGTGAAGAGTGTACATCTA 59.307 47.826 0.00 0.00 0.00 1.98
145 146 2.492484 GTCCGGTGAAGAGTGTACATCT 59.508 50.000 0.00 0.27 0.00 2.90
146 147 2.731341 CGTCCGGTGAAGAGTGTACATC 60.731 54.545 0.00 0.00 0.00 3.06
147 148 1.201647 CGTCCGGTGAAGAGTGTACAT 59.798 52.381 0.00 0.00 0.00 2.29
148 149 0.594602 CGTCCGGTGAAGAGTGTACA 59.405 55.000 0.00 0.00 0.00 2.90
149 150 0.109412 CCGTCCGGTGAAGAGTGTAC 60.109 60.000 0.00 0.00 0.00 2.90
150 151 0.250858 TCCGTCCGGTGAAGAGTGTA 60.251 55.000 0.00 0.00 36.47 2.90
151 152 1.524863 CTCCGTCCGGTGAAGAGTGT 61.525 60.000 0.00 0.00 36.47 3.55
152 153 1.213013 CTCCGTCCGGTGAAGAGTG 59.787 63.158 0.00 0.00 36.47 3.51
153 154 1.977544 CCTCCGTCCGGTGAAGAGT 60.978 63.158 0.00 0.00 36.47 3.24
154 155 2.711922 CCCTCCGTCCGGTGAAGAG 61.712 68.421 0.00 3.95 36.47 2.85
155 156 2.678934 CCCTCCGTCCGGTGAAGA 60.679 66.667 0.00 0.00 36.47 2.87
156 157 2.678934 TCCCTCCGTCCGGTGAAG 60.679 66.667 0.00 0.00 36.47 3.02
157 158 2.141011 TACTCCCTCCGTCCGGTGAA 62.141 60.000 0.00 0.00 36.47 3.18
158 159 2.547640 CTACTCCCTCCGTCCGGTGA 62.548 65.000 0.00 0.00 36.47 4.02
159 160 2.044650 TACTCCCTCCGTCCGGTG 60.045 66.667 0.00 3.10 36.47 4.94
160 161 2.274760 CTACTCCCTCCGTCCGGT 59.725 66.667 0.00 0.00 36.47 5.28
161 162 2.518825 CCTACTCCCTCCGTCCGG 60.519 72.222 0.00 0.00 0.00 5.14
162 163 3.217743 GCCTACTCCCTCCGTCCG 61.218 72.222 0.00 0.00 0.00 4.79
163 164 1.457831 ATGCCTACTCCCTCCGTCC 60.458 63.158 0.00 0.00 0.00 4.79
164 165 0.755698 TCATGCCTACTCCCTCCGTC 60.756 60.000 0.00 0.00 0.00 4.79
165 166 0.105453 ATCATGCCTACTCCCTCCGT 60.105 55.000 0.00 0.00 0.00 4.69
166 167 0.319728 CATCATGCCTACTCCCTCCG 59.680 60.000 0.00 0.00 0.00 4.63
167 168 0.036022 GCATCATGCCTACTCCCTCC 59.964 60.000 0.00 0.00 37.42 4.30
168 169 0.761187 TGCATCATGCCTACTCCCTC 59.239 55.000 7.30 0.00 44.23 4.30
169 170 1.442773 ATGCATCATGCCTACTCCCT 58.557 50.000 7.30 0.00 44.23 4.20
170 171 2.283145 AATGCATCATGCCTACTCCC 57.717 50.000 7.30 0.00 44.23 4.30
171 172 4.392940 AGTTAATGCATCATGCCTACTCC 58.607 43.478 7.30 0.00 44.23 3.85
172 173 4.453819 GGAGTTAATGCATCATGCCTACTC 59.546 45.833 7.30 13.27 44.23 2.59
173 174 4.392940 GGAGTTAATGCATCATGCCTACT 58.607 43.478 7.30 5.00 44.23 2.57
174 175 3.503748 GGGAGTTAATGCATCATGCCTAC 59.496 47.826 7.30 0.00 44.23 3.18
175 176 3.138098 TGGGAGTTAATGCATCATGCCTA 59.862 43.478 7.30 0.00 44.23 3.93
176 177 2.091720 TGGGAGTTAATGCATCATGCCT 60.092 45.455 7.30 0.00 44.23 4.75
177 178 2.035066 GTGGGAGTTAATGCATCATGCC 59.965 50.000 7.30 1.76 44.23 4.40
178 179 2.035066 GGTGGGAGTTAATGCATCATGC 59.965 50.000 1.35 1.35 45.29 4.06
179 180 3.559069 AGGTGGGAGTTAATGCATCATG 58.441 45.455 0.00 0.00 0.00 3.07
180 181 3.745480 CGAGGTGGGAGTTAATGCATCAT 60.745 47.826 0.00 0.00 0.00 2.45
181 182 2.419990 CGAGGTGGGAGTTAATGCATCA 60.420 50.000 0.00 0.00 0.00 3.07
182 183 2.213499 CGAGGTGGGAGTTAATGCATC 58.787 52.381 0.00 0.00 0.00 3.91
183 184 1.559682 ACGAGGTGGGAGTTAATGCAT 59.440 47.619 0.00 0.00 0.00 3.96
184 185 0.981183 ACGAGGTGGGAGTTAATGCA 59.019 50.000 0.00 0.00 0.00 3.96
185 186 2.109425 AACGAGGTGGGAGTTAATGC 57.891 50.000 0.00 0.00 0.00 3.56
186 187 3.939066 AGAAACGAGGTGGGAGTTAATG 58.061 45.455 0.00 0.00 0.00 1.90
187 188 4.202430 ACAAGAAACGAGGTGGGAGTTAAT 60.202 41.667 0.00 0.00 0.00 1.40
188 189 3.135167 ACAAGAAACGAGGTGGGAGTTAA 59.865 43.478 0.00 0.00 0.00 2.01
189 190 2.701951 ACAAGAAACGAGGTGGGAGTTA 59.298 45.455 0.00 0.00 0.00 2.24
190 191 1.489230 ACAAGAAACGAGGTGGGAGTT 59.511 47.619 0.00 0.00 0.00 3.01
191 192 1.129058 ACAAGAAACGAGGTGGGAGT 58.871 50.000 0.00 0.00 0.00 3.85
192 193 2.256117 AACAAGAAACGAGGTGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
193 194 2.092861 TGAAACAAGAAACGAGGTGGGA 60.093 45.455 0.00 0.00 0.00 4.37
194 195 2.294074 TGAAACAAGAAACGAGGTGGG 58.706 47.619 0.00 0.00 0.00 4.61
195 196 3.563808 TCATGAAACAAGAAACGAGGTGG 59.436 43.478 0.00 0.00 0.00 4.61
196 197 4.035091 TGTCATGAAACAAGAAACGAGGTG 59.965 41.667 0.00 0.00 0.00 4.00
197 198 4.196193 TGTCATGAAACAAGAAACGAGGT 58.804 39.130 0.00 0.00 0.00 3.85
198 199 4.811555 TGTCATGAAACAAGAAACGAGG 57.188 40.909 0.00 0.00 0.00 4.63
199 200 7.742151 TGATATGTCATGAAACAAGAAACGAG 58.258 34.615 0.00 0.00 31.81 4.18
200 201 7.665561 TGATATGTCATGAAACAAGAAACGA 57.334 32.000 0.00 0.00 31.81 3.85
201 202 7.271223 GGTTGATATGTCATGAAACAAGAAACG 59.729 37.037 0.00 0.00 33.56 3.60
202 203 8.081633 TGGTTGATATGTCATGAAACAAGAAAC 58.918 33.333 0.00 0.00 33.56 2.78
203 204 8.175925 TGGTTGATATGTCATGAAACAAGAAA 57.824 30.769 0.00 0.00 33.56 2.52
204 205 7.757941 TGGTTGATATGTCATGAAACAAGAA 57.242 32.000 0.00 0.00 33.56 2.52
205 206 7.757941 TTGGTTGATATGTCATGAAACAAGA 57.242 32.000 0.00 0.00 33.56 3.02
208 209 9.460019 TCTTATTGGTTGATATGTCATGAAACA 57.540 29.630 0.00 0.00 33.56 2.83
209 210 9.941664 CTCTTATTGGTTGATATGTCATGAAAC 57.058 33.333 0.00 0.00 33.56 2.78
210 211 9.904198 TCTCTTATTGGTTGATATGTCATGAAA 57.096 29.630 0.00 0.00 33.56 2.69
212 213 9.498176 CATCTCTTATTGGTTGATATGTCATGA 57.502 33.333 0.00 0.00 33.56 3.07
213 214 9.281371 ACATCTCTTATTGGTTGATATGTCATG 57.719 33.333 0.00 0.00 33.56 3.07
214 215 9.281371 CACATCTCTTATTGGTTGATATGTCAT 57.719 33.333 0.00 0.00 33.56 3.06
215 216 7.716560 CCACATCTCTTATTGGTTGATATGTCA 59.283 37.037 0.00 0.00 29.24 3.58
216 217 7.173907 CCCACATCTCTTATTGGTTGATATGTC 59.826 40.741 0.00 0.00 29.24 3.06
217 218 7.000472 CCCACATCTCTTATTGGTTGATATGT 59.000 38.462 0.00 0.00 30.96 2.29
218 219 6.432162 CCCCACATCTCTTATTGGTTGATATG 59.568 42.308 0.00 0.00 0.00 1.78
219 220 6.546484 CCCCACATCTCTTATTGGTTGATAT 58.454 40.000 0.00 0.00 0.00 1.63
220 221 5.690097 GCCCCACATCTCTTATTGGTTGATA 60.690 44.000 0.00 0.00 0.00 2.15
221 222 4.796606 CCCCACATCTCTTATTGGTTGAT 58.203 43.478 0.00 0.00 0.00 2.57
222 223 3.624707 GCCCCACATCTCTTATTGGTTGA 60.625 47.826 0.00 0.00 0.00 3.18
223 224 2.689983 GCCCCACATCTCTTATTGGTTG 59.310 50.000 0.00 0.00 0.00 3.77
224 225 2.683742 CGCCCCACATCTCTTATTGGTT 60.684 50.000 0.00 0.00 0.00 3.67
225 226 1.134098 CGCCCCACATCTCTTATTGGT 60.134 52.381 0.00 0.00 0.00 3.67
226 227 1.134098 ACGCCCCACATCTCTTATTGG 60.134 52.381 0.00 0.00 0.00 3.16
227 228 1.942657 CACGCCCCACATCTCTTATTG 59.057 52.381 0.00 0.00 0.00 1.90
228 229 1.747206 GCACGCCCCACATCTCTTATT 60.747 52.381 0.00 0.00 0.00 1.40
229 230 0.179045 GCACGCCCCACATCTCTTAT 60.179 55.000 0.00 0.00 0.00 1.73
230 231 1.220749 GCACGCCCCACATCTCTTA 59.779 57.895 0.00 0.00 0.00 2.10
231 232 2.045926 GCACGCCCCACATCTCTT 60.046 61.111 0.00 0.00 0.00 2.85
232 233 2.673200 ATGCACGCCCCACATCTCT 61.673 57.895 0.00 0.00 0.00 3.10
233 234 2.124570 ATGCACGCCCCACATCTC 60.125 61.111 0.00 0.00 0.00 2.75
234 235 2.438975 CATGCACGCCCCACATCT 60.439 61.111 0.00 0.00 0.00 2.90
235 236 4.197498 GCATGCACGCCCCACATC 62.197 66.667 14.21 0.00 0.00 3.06
236 237 4.746309 AGCATGCACGCCCCACAT 62.746 61.111 21.98 0.00 0.00 3.21
237 238 4.972733 AAGCATGCACGCCCCACA 62.973 61.111 21.98 0.00 0.00 4.17
238 239 3.631487 GAAAGCATGCACGCCCCAC 62.631 63.158 21.98 0.00 0.00 4.61
239 240 3.372730 GAAAGCATGCACGCCCCA 61.373 61.111 21.98 0.00 0.00 4.96
240 241 2.229690 ATTGAAAGCATGCACGCCCC 62.230 55.000 21.98 3.14 0.00 5.80
241 242 0.803380 GATTGAAAGCATGCACGCCC 60.803 55.000 21.98 4.60 0.00 6.13
242 243 0.109179 TGATTGAAAGCATGCACGCC 60.109 50.000 21.98 6.46 0.00 5.68
243 244 0.986992 GTGATTGAAAGCATGCACGC 59.013 50.000 21.98 0.00 0.00 5.34
244 245 2.624316 AGTGATTGAAAGCATGCACG 57.376 45.000 21.98 0.00 35.12 5.34
245 246 3.904571 TCAAGTGATTGAAAGCATGCAC 58.095 40.909 21.98 11.31 0.00 4.57
246 247 3.822167 TCTCAAGTGATTGAAAGCATGCA 59.178 39.130 21.98 0.00 0.00 3.96
247 248 4.082895 AGTCTCAAGTGATTGAAAGCATGC 60.083 41.667 10.51 10.51 0.00 4.06
248 249 5.624344 AGTCTCAAGTGATTGAAAGCATG 57.376 39.130 0.00 0.00 0.00 4.06
249 250 5.645497 GGTAGTCTCAAGTGATTGAAAGCAT 59.355 40.000 0.00 0.00 0.00 3.79
250 251 4.997395 GGTAGTCTCAAGTGATTGAAAGCA 59.003 41.667 0.00 0.00 0.00 3.91
251 252 4.997395 TGGTAGTCTCAAGTGATTGAAAGC 59.003 41.667 0.00 0.00 0.00 3.51
252 253 7.012327 TGTTTGGTAGTCTCAAGTGATTGAAAG 59.988 37.037 0.00 0.00 0.00 2.62
253 254 6.826231 TGTTTGGTAGTCTCAAGTGATTGAAA 59.174 34.615 0.00 0.00 0.00 2.69
254 255 6.260050 GTGTTTGGTAGTCTCAAGTGATTGAA 59.740 38.462 0.00 0.00 0.00 2.69
255 256 5.758296 GTGTTTGGTAGTCTCAAGTGATTGA 59.242 40.000 0.00 0.00 0.00 2.57
256 257 5.333339 CGTGTTTGGTAGTCTCAAGTGATTG 60.333 44.000 0.00 0.00 0.00 2.67
257 258 4.750098 CGTGTTTGGTAGTCTCAAGTGATT 59.250 41.667 0.00 0.00 0.00 2.57
258 259 4.038763 TCGTGTTTGGTAGTCTCAAGTGAT 59.961 41.667 0.00 0.00 0.00 3.06
259 260 3.382227 TCGTGTTTGGTAGTCTCAAGTGA 59.618 43.478 0.00 0.00 0.00 3.41
260 261 3.489785 GTCGTGTTTGGTAGTCTCAAGTG 59.510 47.826 0.00 0.00 0.00 3.16
261 262 3.131577 TGTCGTGTTTGGTAGTCTCAAGT 59.868 43.478 0.00 0.00 0.00 3.16
262 263 3.713288 TGTCGTGTTTGGTAGTCTCAAG 58.287 45.455 0.00 0.00 0.00 3.02
263 264 3.804786 TGTCGTGTTTGGTAGTCTCAA 57.195 42.857 0.00 0.00 0.00 3.02
264 265 3.649073 CATGTCGTGTTTGGTAGTCTCA 58.351 45.455 0.00 0.00 0.00 3.27
265 266 2.412089 GCATGTCGTGTTTGGTAGTCTC 59.588 50.000 0.00 0.00 0.00 3.36
266 267 2.224185 TGCATGTCGTGTTTGGTAGTCT 60.224 45.455 0.00 0.00 0.00 3.24
267 268 2.139917 TGCATGTCGTGTTTGGTAGTC 58.860 47.619 0.00 0.00 0.00 2.59
268 269 2.143122 CTGCATGTCGTGTTTGGTAGT 58.857 47.619 0.00 0.00 0.00 2.73
269 270 2.096268 CACTGCATGTCGTGTTTGGTAG 60.096 50.000 7.95 0.00 0.00 3.18
270 271 1.870402 CACTGCATGTCGTGTTTGGTA 59.130 47.619 7.95 0.00 0.00 3.25
271 272 0.662619 CACTGCATGTCGTGTTTGGT 59.337 50.000 7.95 0.00 0.00 3.67
272 273 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.000 13.12 0.00 0.00 3.28
273 274 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
274 275 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
275 276 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
276 277 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
277 278 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
278 279 2.297880 TGTACTAACCACTGCATGTCGT 59.702 45.455 0.00 0.00 0.00 4.34
279 280 2.954316 TGTACTAACCACTGCATGTCG 58.046 47.619 0.00 0.00 0.00 4.35
280 281 4.437390 GCAATGTACTAACCACTGCATGTC 60.437 45.833 0.00 0.00 0.00 3.06
281 282 3.440173 GCAATGTACTAACCACTGCATGT 59.560 43.478 0.00 0.00 0.00 3.21
282 283 3.439825 TGCAATGTACTAACCACTGCATG 59.560 43.478 0.00 0.00 32.00 4.06
283 284 3.684908 TGCAATGTACTAACCACTGCAT 58.315 40.909 0.00 0.00 32.00 3.96
284 285 3.133141 TGCAATGTACTAACCACTGCA 57.867 42.857 0.00 0.00 33.55 4.41
285 286 4.019919 CATGCAATGTACTAACCACTGC 57.980 45.455 0.00 0.00 40.20 4.40
316 317 9.302345 CGAGAGAACTTAATGTTTATCTGCTAA 57.698 33.333 0.00 0.00 39.30 3.09
317 318 8.467598 ACGAGAGAACTTAATGTTTATCTGCTA 58.532 33.333 0.00 0.00 39.30 3.49
318 319 7.324178 ACGAGAGAACTTAATGTTTATCTGCT 58.676 34.615 0.00 0.00 39.30 4.24
319 320 7.527084 ACGAGAGAACTTAATGTTTATCTGC 57.473 36.000 0.00 0.00 39.30 4.26
322 323 9.756461 GGAAAACGAGAGAACTTAATGTTTATC 57.244 33.333 0.00 0.00 39.30 1.75
323 324 8.727910 GGGAAAACGAGAGAACTTAATGTTTAT 58.272 33.333 0.00 0.00 39.30 1.40
324 325 7.173735 GGGGAAAACGAGAGAACTTAATGTTTA 59.826 37.037 0.00 0.00 39.30 2.01
325 326 6.016527 GGGGAAAACGAGAGAACTTAATGTTT 60.017 38.462 0.00 0.00 39.30 2.83
326 327 5.472478 GGGGAAAACGAGAGAACTTAATGTT 59.528 40.000 0.00 0.00 42.38 2.71
327 328 5.001874 GGGGAAAACGAGAGAACTTAATGT 58.998 41.667 0.00 0.00 0.00 2.71
328 329 5.246307 AGGGGAAAACGAGAGAACTTAATG 58.754 41.667 0.00 0.00 0.00 1.90
329 330 5.489249 GAGGGGAAAACGAGAGAACTTAAT 58.511 41.667 0.00 0.00 0.00 1.40
330 331 4.262765 GGAGGGGAAAACGAGAGAACTTAA 60.263 45.833 0.00 0.00 0.00 1.85
331 332 3.260128 GGAGGGGAAAACGAGAGAACTTA 59.740 47.826 0.00 0.00 0.00 2.24
332 333 2.038689 GGAGGGGAAAACGAGAGAACTT 59.961 50.000 0.00 0.00 0.00 2.66
333 334 1.624312 GGAGGGGAAAACGAGAGAACT 59.376 52.381 0.00 0.00 0.00 3.01
334 335 1.624312 AGGAGGGGAAAACGAGAGAAC 59.376 52.381 0.00 0.00 0.00 3.01
335 336 1.900486 GAGGAGGGGAAAACGAGAGAA 59.100 52.381 0.00 0.00 0.00 2.87
336 337 1.558233 GAGGAGGGGAAAACGAGAGA 58.442 55.000 0.00 0.00 0.00 3.10
337 338 0.537653 GGAGGAGGGGAAAACGAGAG 59.462 60.000 0.00 0.00 0.00 3.20
338 339 0.908180 GGGAGGAGGGGAAAACGAGA 60.908 60.000 0.00 0.00 0.00 4.04
339 340 1.602771 GGGAGGAGGGGAAAACGAG 59.397 63.158 0.00 0.00 0.00 4.18
340 341 1.921857 GGGGAGGAGGGGAAAACGA 60.922 63.158 0.00 0.00 0.00 3.85
341 342 2.675371 GGGGAGGAGGGGAAAACG 59.325 66.667 0.00 0.00 0.00 3.60
342 343 2.675371 CGGGGAGGAGGGGAAAAC 59.325 66.667 0.00 0.00 0.00 2.43
343 344 2.612746 CCGGGGAGGAGGGGAAAA 60.613 66.667 0.00 0.00 45.00 2.29
344 345 3.937372 GACCGGGGAGGAGGGGAAA 62.937 68.421 6.32 0.00 45.00 3.13
345 346 4.410033 GACCGGGGAGGAGGGGAA 62.410 72.222 6.32 0.00 45.00 3.97
347 348 4.499116 ATGACCGGGGAGGAGGGG 62.499 72.222 6.32 0.00 45.00 4.79
348 349 3.164269 CATGACCGGGGAGGAGGG 61.164 72.222 6.32 0.00 45.00 4.30
349 350 3.164269 CCATGACCGGGGAGGAGG 61.164 72.222 6.32 0.00 45.00 4.30
350 351 2.365635 ACCATGACCGGGGAGGAG 60.366 66.667 6.32 0.00 45.00 3.69
351 352 2.687200 CACCATGACCGGGGAGGA 60.687 66.667 6.32 0.00 45.00 3.71
353 354 3.716195 TGCACCATGACCGGGGAG 61.716 66.667 6.32 0.00 0.00 4.30
354 355 4.028490 GTGCACCATGACCGGGGA 62.028 66.667 5.22 0.00 0.00 4.81
355 356 3.859118 TTGTGCACCATGACCGGGG 62.859 63.158 15.69 0.00 0.00 5.73
356 357 2.282110 TTGTGCACCATGACCGGG 60.282 61.111 15.69 0.00 0.00 5.73
357 358 2.625823 GGTTGTGCACCATGACCGG 61.626 63.158 15.69 0.00 46.42 5.28
358 359 2.953821 GGTTGTGCACCATGACCG 59.046 61.111 15.69 0.00 46.42 4.79
366 367 7.812648 TGTAGTTGATTTATTAGGTTGTGCAC 58.187 34.615 10.75 10.75 0.00 4.57
367 368 7.987750 TGTAGTTGATTTATTAGGTTGTGCA 57.012 32.000 0.00 0.00 0.00 4.57
418 419 5.938710 AGACGTGTAAGTAGATGAGAACTCA 59.061 40.000 6.98 6.98 44.59 3.41
419 420 6.425577 AGACGTGTAAGTAGATGAGAACTC 57.574 41.667 0.00 0.00 0.00 3.01
420 421 8.399425 CAATAGACGTGTAAGTAGATGAGAACT 58.601 37.037 0.00 0.00 0.00 3.01
421 422 7.644551 CCAATAGACGTGTAAGTAGATGAGAAC 59.355 40.741 0.00 0.00 0.00 3.01
422 423 7.681304 GCCAATAGACGTGTAAGTAGATGAGAA 60.681 40.741 0.00 0.00 0.00 2.87
423 424 6.238676 GCCAATAGACGTGTAAGTAGATGAGA 60.239 42.308 0.00 0.00 0.00 3.27
424 425 5.915758 GCCAATAGACGTGTAAGTAGATGAG 59.084 44.000 0.00 0.00 0.00 2.90
425 426 5.358725 TGCCAATAGACGTGTAAGTAGATGA 59.641 40.000 0.00 0.00 0.00 2.92
426 427 5.588240 TGCCAATAGACGTGTAAGTAGATG 58.412 41.667 0.00 0.00 0.00 2.90
427 428 5.847111 TGCCAATAGACGTGTAAGTAGAT 57.153 39.130 0.00 0.00 0.00 1.98
428 429 5.847111 ATGCCAATAGACGTGTAAGTAGA 57.153 39.130 0.00 0.00 0.00 2.59
429 430 8.589335 AATTATGCCAATAGACGTGTAAGTAG 57.411 34.615 0.00 0.00 0.00 2.57
430 431 8.951787 AAATTATGCCAATAGACGTGTAAGTA 57.048 30.769 0.00 0.00 0.00 2.24
431 432 7.551262 TGAAATTATGCCAATAGACGTGTAAGT 59.449 33.333 0.00 0.00 0.00 2.24
432 433 7.915508 TGAAATTATGCCAATAGACGTGTAAG 58.084 34.615 0.00 0.00 0.00 2.34
433 434 7.851387 TGAAATTATGCCAATAGACGTGTAA 57.149 32.000 0.00 0.00 0.00 2.41
434 435 7.851387 TTGAAATTATGCCAATAGACGTGTA 57.149 32.000 0.00 0.00 0.00 2.90
435 436 6.751514 TTGAAATTATGCCAATAGACGTGT 57.248 33.333 0.00 0.00 0.00 4.49
436 437 6.857964 GGATTGAAATTATGCCAATAGACGTG 59.142 38.462 0.00 0.00 31.40 4.49
437 438 6.293407 CGGATTGAAATTATGCCAATAGACGT 60.293 38.462 0.00 0.00 31.40 4.34
438 439 6.073276 TCGGATTGAAATTATGCCAATAGACG 60.073 38.462 0.00 0.00 31.40 4.18
439 440 7.202016 TCGGATTGAAATTATGCCAATAGAC 57.798 36.000 0.00 0.00 31.40 2.59
440 441 7.884877 AGATCGGATTGAAATTATGCCAATAGA 59.115 33.333 0.00 0.00 31.40 1.98
441 442 7.966753 CAGATCGGATTGAAATTATGCCAATAG 59.033 37.037 0.00 0.00 31.40 1.73
442 443 7.094248 CCAGATCGGATTGAAATTATGCCAATA 60.094 37.037 0.00 0.00 36.56 1.90
443 444 6.294899 CCAGATCGGATTGAAATTATGCCAAT 60.295 38.462 0.00 0.00 36.56 3.16
444 445 5.009911 CCAGATCGGATTGAAATTATGCCAA 59.990 40.000 0.00 0.00 36.56 4.52
445 446 4.520111 CCAGATCGGATTGAAATTATGCCA 59.480 41.667 0.00 0.00 36.56 4.92
446 447 4.520492 ACCAGATCGGATTGAAATTATGCC 59.480 41.667 10.05 0.00 38.63 4.40
447 448 5.695851 ACCAGATCGGATTGAAATTATGC 57.304 39.130 10.05 0.00 38.63 3.14
448 449 7.969536 AGTACCAGATCGGATTGAAATTATG 57.030 36.000 10.05 0.00 38.63 1.90
449 450 8.980481 AAAGTACCAGATCGGATTGAAATTAT 57.020 30.769 10.05 0.00 38.63 1.28
450 451 8.801882 AAAAGTACCAGATCGGATTGAAATTA 57.198 30.769 10.05 0.00 38.63 1.40
451 452 7.703058 AAAAGTACCAGATCGGATTGAAATT 57.297 32.000 10.05 0.00 38.63 1.82
452 453 7.827236 TGTAAAAGTACCAGATCGGATTGAAAT 59.173 33.333 10.05 0.00 38.63 2.17
453 454 7.118680 GTGTAAAAGTACCAGATCGGATTGAAA 59.881 37.037 10.05 0.00 38.63 2.69
454 455 6.592607 GTGTAAAAGTACCAGATCGGATTGAA 59.407 38.462 10.05 0.00 38.63 2.69
479 480 7.982224 TCTGAAGCTAGATGAAATGTTGAATG 58.018 34.615 0.00 0.00 0.00 2.67
525 526 8.564574 AGAACTTTCGCTTACAATCATTTACAA 58.435 29.630 0.00 0.00 0.00 2.41
537 538 4.629065 CGTCATCAAGAACTTTCGCTTAC 58.371 43.478 0.00 0.00 0.00 2.34
544 545 2.163818 TCCGCGTCATCAAGAACTTT 57.836 45.000 4.92 0.00 0.00 2.66
630 632 6.239402 GGCATGGTTGGAAATCAGCTAATAAT 60.239 38.462 0.00 0.00 42.35 1.28
726 731 1.372582 TTGATCCATGTCTGAAGCGC 58.627 50.000 0.00 0.00 0.00 5.92
758 763 2.079170 TGGCACAAGGACCAATGAAA 57.921 45.000 4.46 0.00 31.92 2.69
837 876 2.223340 CCATCACTTTATCGCAACAGCC 60.223 50.000 0.00 0.00 0.00 4.85
951 991 6.869388 TGTAGCGATGTGTTGATTAAAGTGTA 59.131 34.615 0.00 0.00 0.00 2.90
968 1008 3.243234 CGTTGAAGGATCTCTGTAGCGAT 60.243 47.826 0.00 0.00 0.00 4.58
970 1010 2.097629 TCGTTGAAGGATCTCTGTAGCG 59.902 50.000 0.00 0.00 0.00 4.26
1154 1195 1.142667 TCTTGTGCACAGGATTGGACA 59.857 47.619 26.08 4.74 45.08 4.02
1331 1372 2.930682 GACGAGAGGAAACATACCTTGC 59.069 50.000 0.00 0.00 37.93 4.01
1404 1449 5.174395 CAACCAACATGTCCAACTCAAAAA 58.826 37.500 0.00 0.00 0.00 1.94
1441 1486 4.395854 AGCGAATGTTCAACATCTGCATAA 59.604 37.500 22.18 0.00 37.97 1.90
1541 2557 1.045407 TACACGAAGGGAACAGCTGT 58.955 50.000 15.25 15.25 0.00 4.40
1559 2575 1.688735 CCTGTCTTGAGGATGCCGATA 59.311 52.381 0.00 0.00 34.69 2.92
1589 2605 0.535102 CCACCTTGTCGGCTCTTTGT 60.535 55.000 0.00 0.00 35.61 2.83
1590 2606 0.250295 TCCACCTTGTCGGCTCTTTG 60.250 55.000 0.00 0.00 35.61 2.77
1622 2638 1.454847 CTCTAGGAGCCCGAGTGCT 60.455 63.158 0.00 0.00 46.37 4.40
1665 2681 4.410400 CGCCTCCGCTTCCCCTTT 62.410 66.667 0.00 0.00 0.00 3.11
1694 2710 4.390556 AGCCCGAGAGAGCCACCT 62.391 66.667 0.00 0.00 0.00 4.00
1746 2762 0.179000 AGGTGGCCTATTGCTTCGAG 59.821 55.000 3.32 0.00 40.92 4.04
1936 2952 6.159293 CGGCATGATCTCTAATTAGTTGCTA 58.841 40.000 12.19 0.00 0.00 3.49
1937 2953 4.993584 CGGCATGATCTCTAATTAGTTGCT 59.006 41.667 12.19 0.00 0.00 3.91
1973 2989 0.748005 AAGGCGAGCACAACAACAGT 60.748 50.000 0.00 0.00 0.00 3.55
1980 2996 1.952990 TGAATTTGAAGGCGAGCACAA 59.047 42.857 0.00 0.00 0.00 3.33
2044 3063 2.094906 CGACGATCAGACCCTAACAACA 60.095 50.000 0.00 0.00 0.00 3.33
2065 3084 4.541482 CGCATGCGCACCATCCAC 62.541 66.667 29.09 0.00 38.40 4.02
2111 3130 7.535139 TGACGAAGCTTTATTTTATTCCCAAG 58.465 34.615 0.00 0.00 0.00 3.61
2355 4865 3.553917 CACACACACACACGAATACTTCA 59.446 43.478 0.00 0.00 0.00 3.02
2375 4887 1.448013 GCTCGTCCTTAGGGCACAC 60.448 63.158 3.00 0.00 0.00 3.82
2376 4888 2.978824 GCTCGTCCTTAGGGCACA 59.021 61.111 3.00 0.00 0.00 4.57
2377 4889 2.202756 CGCTCGTCCTTAGGGCAC 60.203 66.667 3.00 0.00 0.00 5.01
2378 4890 2.221906 GAACGCTCGTCCTTAGGGCA 62.222 60.000 3.00 0.00 0.00 5.36
2379 4891 1.518792 GAACGCTCGTCCTTAGGGC 60.519 63.158 0.00 0.00 0.00 5.19
2514 5028 0.681733 GAGCTTCGCCATAGATCCCA 59.318 55.000 0.00 0.00 0.00 4.37
2517 5031 2.295909 AGACAGAGCTTCGCCATAGATC 59.704 50.000 0.00 0.00 0.00 2.75
2525 5039 1.781998 GCGTATTAGACAGAGCTTCGC 59.218 52.381 0.00 0.00 34.93 4.70
2546 5060 1.409790 TCCTCAAGTTTGTTCGTCGGA 59.590 47.619 0.00 0.00 0.00 4.55
2797 5329 6.542574 AATCGGATAAGTACTCTAGACACG 57.457 41.667 0.00 0.00 0.00 4.49
2805 5337 5.221322 ACGGGGTAAAATCGGATAAGTACTC 60.221 44.000 0.00 0.00 0.00 2.59
2806 5338 4.651045 ACGGGGTAAAATCGGATAAGTACT 59.349 41.667 0.00 0.00 0.00 2.73
2844 5376 3.873361 CAGGAGAACATTGCATGTCGTAT 59.127 43.478 0.00 0.00 44.07 3.06
2850 5382 2.349590 TCGACAGGAGAACATTGCATG 58.650 47.619 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.