Multiple sequence alignment - TraesCS4A01G454300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G454300 chr4A 100.000 4877 0 0 1 4877 718464162 718469038 0.000000e+00 9007
1 TraesCS4A01G454300 chr4A 97.991 4380 79 2 499 4877 718898520 718894149 0.000000e+00 7592
2 TraesCS4A01G454300 chr4A 98.710 465 4 1 1 465 731247145 731247607 0.000000e+00 824
3 TraesCS4A01G454300 chr4A 95.181 498 24 0 2625 3122 718249897 718250394 0.000000e+00 787
4 TraesCS4A01G454300 chr7D 88.564 3349 339 29 569 3910 26384610 26381299 0.000000e+00 4023
5 TraesCS4A01G454300 chr7D 87.496 2847 342 12 1072 3910 26449659 26446819 0.000000e+00 3273
6 TraesCS4A01G454300 chr7D 92.544 456 23 4 465 915 16370747 16370298 1.140000e-180 643
7 TraesCS4A01G454300 chr7D 84.167 360 38 7 680 1026 26450009 26449656 1.010000e-86 331
8 TraesCS4A01G454300 chr7A 89.277 3124 307 17 791 3910 15276513 15273414 0.000000e+00 3888
9 TraesCS4A01G454300 chr7A 89.312 2732 283 9 1153 3881 15254393 15251668 0.000000e+00 3419
10 TraesCS4A01G454300 chr7A 98.710 465 4 1 1 465 19055821 19055359 0.000000e+00 824
11 TraesCS4A01G454300 chr7A 98.491 464 5 1 1 464 405065096 405065557 0.000000e+00 817
12 TraesCS4A01G454300 chr7B 98.925 465 3 1 1 465 3553639 3553177 0.000000e+00 830
13 TraesCS4A01G454300 chr7B 98.922 464 3 1 1 464 748873191 748873652 0.000000e+00 828
14 TraesCS4A01G454300 chr7B 98.710 465 4 1 1 465 457548198 457548660 0.000000e+00 824
15 TraesCS4A01G454300 chr2A 98.922 464 3 1 1 464 694859274 694858813 0.000000e+00 828
16 TraesCS4A01G454300 chr3A 98.710 465 4 1 1 465 214135701 214135239 0.000000e+00 824
17 TraesCS4A01G454300 chr5B 98.710 465 3 2 1 465 711343825 711343364 0.000000e+00 822


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G454300 chr4A 718464162 718469038 4876 False 9007 9007 100.0000 1 4877 1 chr4A.!!$F2 4876
1 TraesCS4A01G454300 chr4A 718894149 718898520 4371 True 7592 7592 97.9910 499 4877 1 chr4A.!!$R1 4378
2 TraesCS4A01G454300 chr7D 26381299 26384610 3311 True 4023 4023 88.5640 569 3910 1 chr7D.!!$R2 3341
3 TraesCS4A01G454300 chr7D 26446819 26450009 3190 True 1802 3273 85.8315 680 3910 2 chr7D.!!$R3 3230
4 TraesCS4A01G454300 chr7A 15273414 15276513 3099 True 3888 3888 89.2770 791 3910 1 chr7A.!!$R2 3119
5 TraesCS4A01G454300 chr7A 15251668 15254393 2725 True 3419 3419 89.3120 1153 3881 1 chr7A.!!$R1 2728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.029567 GGTCGCTACTCACTCCGATG 59.970 60.0 0.0 0.0 31.96 3.84 F
181 182 0.029567 GTCGCTACTCACTCCGATGG 59.970 60.0 0.0 0.0 31.96 3.51 F
182 183 0.107361 TCGCTACTCACTCCGATGGA 60.107 55.0 0.0 0.0 0.00 3.41 F
190 191 0.176680 CACTCCGATGGAAGACAGGG 59.823 60.0 0.0 0.0 0.00 4.45 F
233 234 0.242286 CGATGGGAGATGGTAGCTCG 59.758 60.0 0.0 0.0 33.19 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1095 1.050988 TAGTGCATGGAGGGGAGAGC 61.051 60.000 0.00 0.0 0.00 4.09 R
1100 1113 1.248785 ACAGCTCCCGTTCGAAGCTA 61.249 55.000 8.18 0.0 44.30 3.32 R
1581 1594 2.919971 GCTCAAGTCGAGGTGCTTT 58.080 52.632 0.00 0.0 42.55 3.51 R
2062 2076 3.370104 TGGCCCCACCTAACATATTTTG 58.630 45.455 0.00 0.0 40.22 2.44 R
4408 4435 5.578727 ACGCAAGCTAATTAACTTCTCTCTG 59.421 40.000 0.00 0.0 45.62 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.044123 GCTTGATGGGGTAGACTTGG 57.956 55.000 0.00 0.00 0.00 3.61
20 21 1.282157 GCTTGATGGGGTAGACTTGGT 59.718 52.381 0.00 0.00 0.00 3.67
21 22 2.290960 GCTTGATGGGGTAGACTTGGTT 60.291 50.000 0.00 0.00 0.00 3.67
22 23 3.814316 GCTTGATGGGGTAGACTTGGTTT 60.814 47.826 0.00 0.00 0.00 3.27
23 24 4.407365 CTTGATGGGGTAGACTTGGTTTT 58.593 43.478 0.00 0.00 0.00 2.43
24 25 5.566469 CTTGATGGGGTAGACTTGGTTTTA 58.434 41.667 0.00 0.00 0.00 1.52
25 26 5.174037 TGATGGGGTAGACTTGGTTTTAG 57.826 43.478 0.00 0.00 0.00 1.85
26 27 3.428413 TGGGGTAGACTTGGTTTTAGC 57.572 47.619 0.00 0.00 0.00 3.09
27 28 2.712087 TGGGGTAGACTTGGTTTTAGCA 59.288 45.455 0.00 0.00 0.00 3.49
28 29 3.138653 TGGGGTAGACTTGGTTTTAGCAA 59.861 43.478 0.00 0.00 34.12 3.91
38 39 5.356882 TTGGTTTTAGCAAGACTCATTCG 57.643 39.130 0.00 0.00 31.28 3.34
39 40 4.385825 TGGTTTTAGCAAGACTCATTCGT 58.614 39.130 0.00 0.00 0.00 3.85
40 41 4.213270 TGGTTTTAGCAAGACTCATTCGTG 59.787 41.667 0.00 0.00 36.83 4.35
41 42 4.213482 GGTTTTAGCAAGACTCATTCGTGT 59.787 41.667 0.00 0.00 36.20 4.49
42 43 5.277828 GGTTTTAGCAAGACTCATTCGTGTT 60.278 40.000 0.00 0.00 36.20 3.32
43 44 4.990543 TTAGCAAGACTCATTCGTGTTG 57.009 40.909 0.00 0.00 40.11 3.33
44 45 2.146342 AGCAAGACTCATTCGTGTTGG 58.854 47.619 0.00 0.00 38.27 3.77
45 46 1.400242 GCAAGACTCATTCGTGTTGGC 60.400 52.381 0.00 0.00 38.27 4.52
46 47 1.136252 CAAGACTCATTCGTGTTGGCG 60.136 52.381 0.00 0.00 35.30 5.69
47 48 1.132640 GACTCATTCGTGTTGGCGC 59.867 57.895 0.00 0.00 0.00 6.53
61 62 2.867472 GCGCGTGTGCCTTGTTAT 59.133 55.556 8.43 0.00 38.08 1.89
62 63 1.511887 GCGCGTGTGCCTTGTTATG 60.512 57.895 8.43 0.00 38.08 1.90
63 64 1.134487 CGCGTGTGCCTTGTTATGG 59.866 57.895 0.00 0.00 38.08 2.74
64 65 1.506262 GCGTGTGCCTTGTTATGGG 59.494 57.895 0.00 0.00 33.98 4.00
72 73 1.956477 GCCTTGTTATGGGCAGTATGG 59.044 52.381 0.00 0.00 46.84 2.74
73 74 2.422803 GCCTTGTTATGGGCAGTATGGA 60.423 50.000 0.00 0.00 46.84 3.41
74 75 3.897239 CCTTGTTATGGGCAGTATGGAA 58.103 45.455 0.00 0.00 35.86 3.53
75 76 3.632145 CCTTGTTATGGGCAGTATGGAAC 59.368 47.826 0.00 0.00 35.86 3.62
76 77 4.526970 CTTGTTATGGGCAGTATGGAACT 58.473 43.478 0.00 0.00 39.81 3.01
90 91 6.860080 AGTATGGAACTGCAGAAATGATTTG 58.140 36.000 23.35 0.00 36.93 2.32
91 92 4.524316 TGGAACTGCAGAAATGATTTGG 57.476 40.909 23.35 0.00 0.00 3.28
92 93 3.896888 TGGAACTGCAGAAATGATTTGGT 59.103 39.130 23.35 0.00 0.00 3.67
93 94 4.344679 TGGAACTGCAGAAATGATTTGGTT 59.655 37.500 23.35 0.00 0.00 3.67
94 95 5.163322 TGGAACTGCAGAAATGATTTGGTTT 60.163 36.000 23.35 0.00 0.00 3.27
95 96 5.759763 GGAACTGCAGAAATGATTTGGTTTT 59.240 36.000 23.35 0.00 0.00 2.43
96 97 6.260714 GGAACTGCAGAAATGATTTGGTTTTT 59.739 34.615 23.35 0.00 0.00 1.94
97 98 7.440856 GGAACTGCAGAAATGATTTGGTTTTTA 59.559 33.333 23.35 0.00 0.00 1.52
98 99 8.729805 AACTGCAGAAATGATTTGGTTTTTAA 57.270 26.923 23.35 0.00 0.00 1.52
99 100 8.141835 ACTGCAGAAATGATTTGGTTTTTAAC 57.858 30.769 23.35 0.00 0.00 2.01
100 101 7.768120 ACTGCAGAAATGATTTGGTTTTTAACA 59.232 29.630 23.35 0.00 0.00 2.41
101 102 8.140677 TGCAGAAATGATTTGGTTTTTAACAG 57.859 30.769 0.00 0.00 0.00 3.16
102 103 7.984050 TGCAGAAATGATTTGGTTTTTAACAGA 59.016 29.630 0.00 0.00 0.00 3.41
103 104 8.490355 GCAGAAATGATTTGGTTTTTAACAGAG 58.510 33.333 0.00 0.00 0.00 3.35
104 105 8.490355 CAGAAATGATTTGGTTTTTAACAGAGC 58.510 33.333 0.00 0.00 0.00 4.09
105 106 8.203485 AGAAATGATTTGGTTTTTAACAGAGCA 58.797 29.630 0.00 0.00 0.00 4.26
106 107 8.729805 AAATGATTTGGTTTTTAACAGAGCAA 57.270 26.923 0.00 0.00 0.00 3.91
107 108 7.713764 ATGATTTGGTTTTTAACAGAGCAAC 57.286 32.000 0.00 0.00 31.35 4.17
108 109 5.746245 TGATTTGGTTTTTAACAGAGCAACG 59.254 36.000 0.00 0.00 31.35 4.10
109 110 4.966965 TTGGTTTTTAACAGAGCAACGA 57.033 36.364 0.00 0.00 0.00 3.85
110 111 4.966965 TGGTTTTTAACAGAGCAACGAA 57.033 36.364 0.00 0.00 0.00 3.85
111 112 4.664188 TGGTTTTTAACAGAGCAACGAAC 58.336 39.130 0.00 0.00 0.00 3.95
112 113 4.396790 TGGTTTTTAACAGAGCAACGAACT 59.603 37.500 0.00 0.00 0.00 3.01
113 114 5.106078 TGGTTTTTAACAGAGCAACGAACTT 60.106 36.000 0.00 0.00 0.00 2.66
114 115 5.803461 GGTTTTTAACAGAGCAACGAACTTT 59.197 36.000 0.00 0.00 0.00 2.66
115 116 6.020916 GGTTTTTAACAGAGCAACGAACTTTC 60.021 38.462 0.00 0.00 0.00 2.62
116 117 5.804692 TTTAACAGAGCAACGAACTTTCA 57.195 34.783 0.00 0.00 0.00 2.69
117 118 6.371809 TTTAACAGAGCAACGAACTTTCAT 57.628 33.333 0.00 0.00 0.00 2.57
118 119 4.900635 AACAGAGCAACGAACTTTCATT 57.099 36.364 0.00 0.00 0.00 2.57
119 120 4.900635 ACAGAGCAACGAACTTTCATTT 57.099 36.364 0.00 0.00 0.00 2.32
120 121 5.248870 ACAGAGCAACGAACTTTCATTTT 57.751 34.783 0.00 0.00 0.00 1.82
121 122 5.650543 ACAGAGCAACGAACTTTCATTTTT 58.349 33.333 0.00 0.00 0.00 1.94
140 141 2.128771 TTGCAGGTTATCTTCAGGGC 57.871 50.000 0.00 0.00 0.00 5.19
141 142 0.255890 TGCAGGTTATCTTCAGGGCC 59.744 55.000 0.00 0.00 0.00 5.80
142 143 0.255890 GCAGGTTATCTTCAGGGCCA 59.744 55.000 6.18 0.00 0.00 5.36
143 144 2.019156 GCAGGTTATCTTCAGGGCCAC 61.019 57.143 6.18 0.00 0.00 5.01
144 145 1.281867 CAGGTTATCTTCAGGGCCACA 59.718 52.381 6.18 0.00 0.00 4.17
145 146 1.561542 AGGTTATCTTCAGGGCCACAG 59.438 52.381 6.18 0.00 0.00 3.66
146 147 1.383523 GTTATCTTCAGGGCCACAGC 58.616 55.000 6.18 0.00 38.76 4.40
147 148 0.107703 TTATCTTCAGGGCCACAGCG 60.108 55.000 6.18 0.00 41.24 5.18
148 149 1.264749 TATCTTCAGGGCCACAGCGT 61.265 55.000 6.18 0.00 41.24 5.07
149 150 2.129555 ATCTTCAGGGCCACAGCGTT 62.130 55.000 6.18 0.00 41.24 4.84
150 151 2.594303 TTCAGGGCCACAGCGTTG 60.594 61.111 6.18 0.00 41.24 4.10
151 152 3.113514 TTCAGGGCCACAGCGTTGA 62.114 57.895 6.18 0.00 41.24 3.18
152 153 2.360350 CAGGGCCACAGCGTTGAT 60.360 61.111 6.18 0.00 41.24 2.57
153 154 2.045926 AGGGCCACAGCGTTGATC 60.046 61.111 6.18 0.00 41.24 2.92
154 155 3.134127 GGGCCACAGCGTTGATCC 61.134 66.667 6.16 3.56 41.24 3.36
155 156 3.499737 GGCCACAGCGTTGATCCG 61.500 66.667 6.16 0.00 41.24 4.18
156 157 2.742372 GCCACAGCGTTGATCCGT 60.742 61.111 6.16 0.00 0.00 4.69
157 158 1.447140 GCCACAGCGTTGATCCGTA 60.447 57.895 6.16 0.00 0.00 4.02
158 159 0.810031 GCCACAGCGTTGATCCGTAT 60.810 55.000 6.16 0.00 0.00 3.06
159 160 0.930310 CCACAGCGTTGATCCGTATG 59.070 55.000 6.16 0.00 0.00 2.39
160 161 1.640428 CACAGCGTTGATCCGTATGT 58.360 50.000 6.16 0.00 32.62 2.29
161 162 1.324435 CACAGCGTTGATCCGTATGTG 59.676 52.381 6.16 13.15 39.45 3.21
162 163 0.930310 CAGCGTTGATCCGTATGTGG 59.070 55.000 0.00 0.00 0.00 4.17
163 164 0.535335 AGCGTTGATCCGTATGTGGT 59.465 50.000 0.00 0.00 0.00 4.16
164 165 0.928229 GCGTTGATCCGTATGTGGTC 59.072 55.000 0.00 0.00 0.00 4.02
165 166 1.197055 CGTTGATCCGTATGTGGTCG 58.803 55.000 0.00 0.00 0.00 4.79
166 167 0.928229 GTTGATCCGTATGTGGTCGC 59.072 55.000 0.00 0.00 0.00 5.19
167 168 0.821517 TTGATCCGTATGTGGTCGCT 59.178 50.000 0.00 0.00 0.00 4.93
168 169 1.682740 TGATCCGTATGTGGTCGCTA 58.317 50.000 0.00 0.00 0.00 4.26
169 170 1.335810 TGATCCGTATGTGGTCGCTAC 59.664 52.381 0.00 0.00 0.00 3.58
170 171 1.607628 GATCCGTATGTGGTCGCTACT 59.392 52.381 0.00 0.00 0.00 2.57
171 172 1.019673 TCCGTATGTGGTCGCTACTC 58.980 55.000 0.00 0.00 0.00 2.59
172 173 0.736636 CCGTATGTGGTCGCTACTCA 59.263 55.000 0.00 0.00 0.00 3.41
173 174 1.533338 CCGTATGTGGTCGCTACTCAC 60.533 57.143 3.91 3.91 0.00 3.51
174 175 1.400846 CGTATGTGGTCGCTACTCACT 59.599 52.381 10.01 1.88 31.73 3.41
175 176 2.539142 CGTATGTGGTCGCTACTCACTC 60.539 54.545 10.01 3.07 31.73 3.51
176 177 0.818296 ATGTGGTCGCTACTCACTCC 59.182 55.000 10.01 0.00 31.73 3.85
177 178 1.136984 GTGGTCGCTACTCACTCCG 59.863 63.158 3.71 0.00 0.00 4.63
178 179 1.002990 TGGTCGCTACTCACTCCGA 60.003 57.895 0.00 0.00 0.00 4.55
179 180 0.393944 TGGTCGCTACTCACTCCGAT 60.394 55.000 0.00 0.00 31.96 4.18
180 181 0.029567 GGTCGCTACTCACTCCGATG 59.970 60.000 0.00 0.00 31.96 3.84
181 182 0.029567 GTCGCTACTCACTCCGATGG 59.970 60.000 0.00 0.00 31.96 3.51
182 183 0.107361 TCGCTACTCACTCCGATGGA 60.107 55.000 0.00 0.00 0.00 3.41
183 184 0.738975 CGCTACTCACTCCGATGGAA 59.261 55.000 0.00 0.00 0.00 3.53
184 185 1.268794 CGCTACTCACTCCGATGGAAG 60.269 57.143 0.00 0.00 0.00 3.46
185 186 2.025155 GCTACTCACTCCGATGGAAGA 58.975 52.381 0.00 0.00 0.00 2.87
186 187 2.223618 GCTACTCACTCCGATGGAAGAC 60.224 54.545 0.00 0.00 0.00 3.01
187 188 1.924731 ACTCACTCCGATGGAAGACA 58.075 50.000 0.00 0.00 0.00 3.41
188 189 1.821753 ACTCACTCCGATGGAAGACAG 59.178 52.381 0.00 0.00 0.00 3.51
189 190 1.135915 CTCACTCCGATGGAAGACAGG 59.864 57.143 0.00 0.00 0.00 4.00
190 191 0.176680 CACTCCGATGGAAGACAGGG 59.823 60.000 0.00 0.00 0.00 4.45
191 192 0.978146 ACTCCGATGGAAGACAGGGG 60.978 60.000 0.00 0.00 0.00 4.79
192 193 1.689233 TCCGATGGAAGACAGGGGG 60.689 63.158 0.00 0.00 0.00 5.40
193 194 2.190578 CGATGGAAGACAGGGGGC 59.809 66.667 0.00 0.00 0.00 5.80
194 195 2.669133 CGATGGAAGACAGGGGGCA 61.669 63.158 0.00 0.00 0.00 5.36
195 196 1.925888 GATGGAAGACAGGGGGCAT 59.074 57.895 0.00 0.00 0.00 4.40
196 197 0.259938 GATGGAAGACAGGGGGCATT 59.740 55.000 0.00 0.00 0.00 3.56
197 198 0.712380 ATGGAAGACAGGGGGCATTT 59.288 50.000 0.00 0.00 0.00 2.32
198 199 0.251742 TGGAAGACAGGGGGCATTTG 60.252 55.000 0.00 0.00 0.00 2.32
199 200 0.972471 GGAAGACAGGGGGCATTTGG 60.972 60.000 0.00 0.00 0.00 3.28
200 201 1.607801 GAAGACAGGGGGCATTTGGC 61.608 60.000 0.00 0.00 43.74 4.52
201 202 2.037847 GACAGGGGGCATTTGGCT 59.962 61.111 4.01 0.00 44.01 4.75
202 203 1.214305 AGACAGGGGGCATTTGGCTA 61.214 55.000 4.01 0.00 44.01 3.93
203 204 1.000359 ACAGGGGGCATTTGGCTAC 60.000 57.895 4.01 0.00 44.01 3.58
204 205 1.307647 CAGGGGGCATTTGGCTACT 59.692 57.895 4.01 0.35 44.01 2.57
205 206 1.039233 CAGGGGGCATTTGGCTACTG 61.039 60.000 4.01 8.66 44.01 2.74
206 207 2.426406 GGGGGCATTTGGCTACTGC 61.426 63.158 2.82 2.82 44.01 4.40
207 208 2.774799 GGGGCATTTGGCTACTGCG 61.775 63.158 5.33 0.00 44.01 5.18
208 209 2.046285 GGGCATTTGGCTACTGCGT 61.046 57.895 5.33 0.00 44.01 5.24
209 210 1.429423 GGCATTTGGCTACTGCGTC 59.571 57.895 5.33 0.00 44.01 5.19
210 211 1.026718 GGCATTTGGCTACTGCGTCT 61.027 55.000 5.33 0.00 44.01 4.18
211 212 1.651987 GCATTTGGCTACTGCGTCTA 58.348 50.000 0.00 0.00 40.82 2.59
212 213 1.327764 GCATTTGGCTACTGCGTCTAC 59.672 52.381 0.00 0.00 40.82 2.59
213 214 1.933853 CATTTGGCTACTGCGTCTACC 59.066 52.381 0.00 0.00 40.82 3.18
214 215 0.248289 TTTGGCTACTGCGTCTACCC 59.752 55.000 0.00 0.00 40.82 3.69
215 216 1.940883 TTGGCTACTGCGTCTACCCG 61.941 60.000 0.00 0.00 40.82 5.28
216 217 2.117156 GGCTACTGCGTCTACCCGA 61.117 63.158 0.00 0.00 40.82 5.14
217 218 1.453762 GGCTACTGCGTCTACCCGAT 61.454 60.000 0.00 0.00 40.82 4.18
218 219 0.317938 GCTACTGCGTCTACCCGATG 60.318 60.000 0.00 0.00 0.00 3.84
219 220 0.311165 CTACTGCGTCTACCCGATGG 59.689 60.000 0.00 0.00 37.80 3.51
227 228 3.149436 CTACCCGATGGGAGATGGT 57.851 57.895 9.30 0.00 46.90 3.55
228 229 2.304221 CTACCCGATGGGAGATGGTA 57.696 55.000 9.30 0.00 46.90 3.25
229 230 2.171840 CTACCCGATGGGAGATGGTAG 58.828 57.143 9.30 0.00 46.90 3.18
230 231 3.727455 CTACCCGATGGGAGATGGTAGC 61.727 59.091 9.30 0.00 46.90 3.58
231 232 2.751991 CCGATGGGAGATGGTAGCT 58.248 57.895 0.00 0.00 34.06 3.32
232 233 0.605589 CCGATGGGAGATGGTAGCTC 59.394 60.000 0.00 0.00 34.06 4.09
233 234 0.242286 CGATGGGAGATGGTAGCTCG 59.758 60.000 0.00 0.00 33.19 5.03
234 235 0.605589 GATGGGAGATGGTAGCTCGG 59.394 60.000 0.00 0.00 33.19 4.63
235 236 0.833834 ATGGGAGATGGTAGCTCGGG 60.834 60.000 0.00 0.00 33.19 5.14
236 237 1.457831 GGGAGATGGTAGCTCGGGT 60.458 63.158 0.00 0.00 33.19 5.28
237 238 1.049289 GGGAGATGGTAGCTCGGGTT 61.049 60.000 0.00 0.00 33.19 4.11
238 239 1.700955 GGAGATGGTAGCTCGGGTTA 58.299 55.000 0.00 0.00 33.19 2.85
239 240 2.249139 GGAGATGGTAGCTCGGGTTAT 58.751 52.381 0.00 0.00 33.19 1.89
240 241 2.633481 GGAGATGGTAGCTCGGGTTATT 59.367 50.000 0.00 0.00 33.19 1.40
241 242 3.071167 GGAGATGGTAGCTCGGGTTATTT 59.929 47.826 0.00 0.00 33.19 1.40
242 243 4.444449 GGAGATGGTAGCTCGGGTTATTTT 60.444 45.833 0.00 0.00 33.19 1.82
243 244 5.112129 AGATGGTAGCTCGGGTTATTTTT 57.888 39.130 0.00 0.00 0.00 1.94
244 245 6.243216 AGATGGTAGCTCGGGTTATTTTTA 57.757 37.500 0.00 0.00 0.00 1.52
245 246 6.655930 AGATGGTAGCTCGGGTTATTTTTAA 58.344 36.000 0.00 0.00 0.00 1.52
246 247 6.541278 AGATGGTAGCTCGGGTTATTTTTAAC 59.459 38.462 0.00 0.00 0.00 2.01
247 248 4.943093 TGGTAGCTCGGGTTATTTTTAACC 59.057 41.667 6.40 6.40 46.63 2.85
257 258 6.954616 GGTTATTTTTAACCGGTTTGGATG 57.045 37.500 27.64 0.00 42.00 3.51
258 259 5.870433 GGTTATTTTTAACCGGTTTGGATGG 59.130 40.000 27.64 0.00 42.00 3.51
259 260 3.388345 TTTTTAACCGGTTTGGATGGC 57.612 42.857 27.64 0.00 42.00 4.40
260 261 0.882474 TTTAACCGGTTTGGATGGCG 59.118 50.000 27.64 0.00 42.00 5.69
261 262 0.961358 TTAACCGGTTTGGATGGCGG 60.961 55.000 27.64 0.00 42.00 6.13
262 263 2.127027 TAACCGGTTTGGATGGCGGT 62.127 55.000 27.64 0.00 42.00 5.68
263 264 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
264 265 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
265 266 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
266 267 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
267 268 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
268 269 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
269 270 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
270 271 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
271 272 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
272 273 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
273 274 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
274 275 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
275 276 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
276 277 4.161565 GGATGGCGGTCATGTAATAGGATA 59.838 45.833 0.00 0.00 35.97 2.59
277 278 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
278 279 3.513912 TGGCGGTCATGTAATAGGATAGG 59.486 47.826 0.00 0.00 0.00 2.57
279 280 3.522553 GCGGTCATGTAATAGGATAGGC 58.477 50.000 0.00 0.00 0.00 3.93
280 281 3.056107 GCGGTCATGTAATAGGATAGGCA 60.056 47.826 0.00 0.00 0.00 4.75
281 282 4.383118 GCGGTCATGTAATAGGATAGGCAT 60.383 45.833 0.00 0.00 0.00 4.40
282 283 5.111989 CGGTCATGTAATAGGATAGGCATG 58.888 45.833 0.00 0.00 36.14 4.06
283 284 5.337571 CGGTCATGTAATAGGATAGGCATGT 60.338 44.000 0.00 0.00 36.21 3.21
284 285 6.127451 CGGTCATGTAATAGGATAGGCATGTA 60.127 42.308 0.00 0.00 36.21 2.29
285 286 7.268586 GGTCATGTAATAGGATAGGCATGTAG 58.731 42.308 0.00 0.00 36.21 2.74
286 287 7.093289 GGTCATGTAATAGGATAGGCATGTAGT 60.093 40.741 0.00 0.00 36.21 2.73
287 288 7.761704 GTCATGTAATAGGATAGGCATGTAGTG 59.238 40.741 0.00 0.00 36.21 2.74
312 313 3.622514 TTTTTGCCAGCCGGTTGT 58.377 50.000 17.69 0.00 33.28 3.32
313 314 1.142748 TTTTTGCCAGCCGGTTGTG 59.857 52.632 17.69 9.73 33.28 3.33
314 315 2.303549 TTTTTGCCAGCCGGTTGTGG 62.304 55.000 17.69 15.43 36.85 4.17
326 327 3.828786 CCGGTTGTGGCTTTATGTTTAC 58.171 45.455 0.00 0.00 0.00 2.01
327 328 3.484683 CGGTTGTGGCTTTATGTTTACG 58.515 45.455 0.00 0.00 0.00 3.18
328 329 3.239254 GGTTGTGGCTTTATGTTTACGC 58.761 45.455 0.00 0.00 0.00 4.42
329 330 3.057806 GGTTGTGGCTTTATGTTTACGCT 60.058 43.478 0.00 0.00 0.00 5.07
330 331 4.156182 GTTGTGGCTTTATGTTTACGCTC 58.844 43.478 0.00 0.00 0.00 5.03
331 332 2.413796 TGTGGCTTTATGTTTACGCTCG 59.586 45.455 0.00 0.00 0.00 5.03
332 333 1.395608 TGGCTTTATGTTTACGCTCGC 59.604 47.619 0.00 0.00 0.00 5.03
333 334 1.267882 GGCTTTATGTTTACGCTCGCC 60.268 52.381 0.00 0.00 0.00 5.54
334 335 1.664151 GCTTTATGTTTACGCTCGCCT 59.336 47.619 0.00 0.00 0.00 5.52
335 336 2.536928 GCTTTATGTTTACGCTCGCCTG 60.537 50.000 0.00 0.00 0.00 4.85
336 337 2.658373 TTATGTTTACGCTCGCCTGA 57.342 45.000 0.00 0.00 0.00 3.86
337 338 2.203800 TATGTTTACGCTCGCCTGAG 57.796 50.000 0.00 0.00 45.49 3.35
349 350 2.811317 CCTGAGCGGCTTGTCGTC 60.811 66.667 2.97 0.00 0.00 4.20
350 351 2.259818 CTGAGCGGCTTGTCGTCT 59.740 61.111 2.97 0.00 0.00 4.18
351 352 1.373497 CTGAGCGGCTTGTCGTCTT 60.373 57.895 2.97 0.00 0.00 3.01
352 353 0.946221 CTGAGCGGCTTGTCGTCTTT 60.946 55.000 2.97 0.00 0.00 2.52
353 354 0.531974 TGAGCGGCTTGTCGTCTTTT 60.532 50.000 2.97 0.00 0.00 2.27
354 355 0.586802 GAGCGGCTTGTCGTCTTTTT 59.413 50.000 2.97 0.00 0.00 1.94
378 379 7.875327 TTTTACTTTAAACCTGCTGAAGACT 57.125 32.000 0.00 0.00 0.00 3.24
379 380 7.875327 TTTACTTTAAACCTGCTGAAGACTT 57.125 32.000 0.00 0.00 0.00 3.01
380 381 7.875327 TTACTTTAAACCTGCTGAAGACTTT 57.125 32.000 0.00 0.00 0.00 2.66
381 382 6.136541 ACTTTAAACCTGCTGAAGACTTTG 57.863 37.500 0.00 0.00 0.00 2.77
382 383 5.652452 ACTTTAAACCTGCTGAAGACTTTGT 59.348 36.000 0.00 0.00 0.00 2.83
383 384 5.499139 TTAAACCTGCTGAAGACTTTGTG 57.501 39.130 0.00 0.00 0.00 3.33
384 385 3.281727 AACCTGCTGAAGACTTTGTGA 57.718 42.857 0.00 0.00 0.00 3.58
385 386 2.565841 ACCTGCTGAAGACTTTGTGAC 58.434 47.619 0.00 0.00 0.00 3.67
386 387 2.092968 ACCTGCTGAAGACTTTGTGACA 60.093 45.455 0.00 0.00 0.00 3.58
387 388 2.289002 CCTGCTGAAGACTTTGTGACAC 59.711 50.000 0.00 0.00 0.00 3.67
388 389 3.201290 CTGCTGAAGACTTTGTGACACT 58.799 45.455 7.20 0.00 0.00 3.55
389 390 3.198068 TGCTGAAGACTTTGTGACACTC 58.802 45.455 7.20 0.00 0.00 3.51
390 391 3.118629 TGCTGAAGACTTTGTGACACTCT 60.119 43.478 7.20 0.00 0.00 3.24
391 392 3.492756 GCTGAAGACTTTGTGACACTCTC 59.507 47.826 7.20 0.00 0.00 3.20
392 393 4.739137 GCTGAAGACTTTGTGACACTCTCT 60.739 45.833 7.20 0.00 0.00 3.10
393 394 5.508153 GCTGAAGACTTTGTGACACTCTCTA 60.508 44.000 7.20 0.00 0.00 2.43
394 395 6.656632 TGAAGACTTTGTGACACTCTCTAT 57.343 37.500 7.20 0.00 0.00 1.98
395 396 7.055667 TGAAGACTTTGTGACACTCTCTATT 57.944 36.000 7.20 0.00 0.00 1.73
396 397 7.500992 TGAAGACTTTGTGACACTCTCTATTT 58.499 34.615 7.20 0.00 0.00 1.40
397 398 7.987458 TGAAGACTTTGTGACACTCTCTATTTT 59.013 33.333 7.20 0.00 0.00 1.82
398 399 9.477484 GAAGACTTTGTGACACTCTCTATTTTA 57.523 33.333 7.20 0.00 0.00 1.52
399 400 9.832445 AAGACTTTGTGACACTCTCTATTTTAA 57.168 29.630 7.20 0.00 0.00 1.52
420 421 9.448438 TTTTAATATTATGAGCCGTATGCATCT 57.552 29.630 0.19 0.00 44.83 2.90
421 422 9.448438 TTTAATATTATGAGCCGTATGCATCTT 57.552 29.630 0.19 0.00 44.83 2.40
424 425 9.618890 AATATTATGAGCCGTATGCATCTTATT 57.381 29.630 0.19 0.00 44.83 1.40
425 426 6.726258 TTATGAGCCGTATGCATCTTATTG 57.274 37.500 0.19 0.00 44.83 1.90
426 427 4.335400 TGAGCCGTATGCATCTTATTGA 57.665 40.909 0.19 0.00 44.83 2.57
427 428 4.898320 TGAGCCGTATGCATCTTATTGAT 58.102 39.130 0.19 0.00 44.83 2.57
437 438 4.750952 CATCTTATTGATGCAGAGGCTG 57.249 45.455 0.00 0.00 44.96 4.85
438 439 3.204306 TCTTATTGATGCAGAGGCTGG 57.796 47.619 0.00 0.00 41.91 4.85
439 440 2.158711 TCTTATTGATGCAGAGGCTGGG 60.159 50.000 0.00 0.00 41.91 4.45
440 441 0.475475 TATTGATGCAGAGGCTGGGG 59.525 55.000 0.00 0.00 41.91 4.96
441 442 1.578215 ATTGATGCAGAGGCTGGGGT 61.578 55.000 0.00 0.00 41.91 4.95
442 443 1.792757 TTGATGCAGAGGCTGGGGTT 61.793 55.000 0.00 0.00 41.91 4.11
443 444 1.751927 GATGCAGAGGCTGGGGTTG 60.752 63.158 0.00 0.00 41.91 3.77
444 445 3.951769 ATGCAGAGGCTGGGGTTGC 62.952 63.158 0.00 0.00 41.91 4.17
445 446 4.666253 GCAGAGGCTGGGGTTGCA 62.666 66.667 0.00 0.00 36.96 4.08
446 447 2.674380 CAGAGGCTGGGGTTGCAC 60.674 66.667 0.00 0.00 0.00 4.57
447 448 3.971702 AGAGGCTGGGGTTGCACC 61.972 66.667 0.00 0.00 37.60 5.01
458 459 2.700722 GGTTGCACCCCTTTTCAAAA 57.299 45.000 0.00 0.00 30.04 2.44
459 460 2.992593 GGTTGCACCCCTTTTCAAAAA 58.007 42.857 0.00 0.00 30.04 1.94
491 492 9.666626 CACATTATATATACGAGTAAGCTAGCC 57.333 37.037 12.13 0.00 0.00 3.93
492 493 8.557864 ACATTATATATACGAGTAAGCTAGCCG 58.442 37.037 12.13 10.01 0.00 5.52
493 494 8.771766 CATTATATATACGAGTAAGCTAGCCGA 58.228 37.037 12.13 0.00 0.00 5.54
494 495 6.847956 ATATATACGAGTAAGCTAGCCGAG 57.152 41.667 12.13 0.00 0.00 4.63
495 496 2.322355 TACGAGTAAGCTAGCCGAGT 57.678 50.000 12.13 1.82 0.00 4.18
496 497 0.733729 ACGAGTAAGCTAGCCGAGTG 59.266 55.000 12.13 0.00 0.00 3.51
497 498 1.015109 CGAGTAAGCTAGCCGAGTGA 58.985 55.000 12.13 0.00 0.00 3.41
498 499 1.400846 CGAGTAAGCTAGCCGAGTGAA 59.599 52.381 12.13 0.00 0.00 3.18
499 500 2.159421 CGAGTAAGCTAGCCGAGTGAAA 60.159 50.000 12.13 0.00 0.00 2.69
500 501 3.180613 GAGTAAGCTAGCCGAGTGAAAC 58.819 50.000 12.13 0.00 0.00 2.78
573 574 2.356382 TGTCCTTGCAGTTTTGTAACCG 59.644 45.455 0.00 0.00 34.71 4.44
588 589 1.760479 AACCGTCCATCGTTGACCCA 61.760 55.000 0.00 0.00 37.94 4.51
589 590 1.220749 CCGTCCATCGTTGACCCAT 59.779 57.895 0.00 0.00 37.94 4.00
590 591 0.462375 CCGTCCATCGTTGACCCATA 59.538 55.000 0.00 0.00 37.94 2.74
838 840 4.083003 TGTTAGGTTTTTGCGAGCATAAGG 60.083 41.667 0.00 0.00 0.00 2.69
861 863 5.394443 GGCATACAAATCACATCAATGGTGT 60.394 40.000 0.00 0.00 37.52 4.16
881 883 0.322277 TAGCCAGTCTTCCGTCGACT 60.322 55.000 14.70 0.00 42.17 4.18
893 895 0.311165 CGTCGACTGGTGACTTGTCT 59.689 55.000 14.70 0.00 34.17 3.41
900 902 4.636249 GACTGGTGACTTGTCTTCTGAAT 58.364 43.478 2.35 0.00 33.76 2.57
974 987 6.007485 TGCATACCTTCATACCCAAATACA 57.993 37.500 0.00 0.00 0.00 2.29
977 990 4.829872 ACCTTCATACCCAAATACACGA 57.170 40.909 0.00 0.00 0.00 4.35
1047 1060 6.013725 TCCAAGGAACTCTGATAGCTTTGTTA 60.014 38.462 0.00 0.00 38.49 2.41
1056 1069 4.272489 TGATAGCTTTGTTATGCCTGCTT 58.728 39.130 0.00 0.00 32.72 3.91
1082 1095 2.638981 TTTCCACCACCAGCCACAGG 62.639 60.000 0.00 0.00 0.00 4.00
1100 1113 2.373707 GCTCTCCCCTCCATGCACT 61.374 63.158 0.00 0.00 0.00 4.40
1125 1138 3.858868 GAACGGGAGCTGTGTCGCA 62.859 63.158 0.00 0.00 0.00 5.10
1398 1411 4.160329 ACTTCAACTGGACTGAGATACCA 58.840 43.478 0.00 0.00 0.00 3.25
1416 1429 6.881602 AGATACCAGACTTCATTGGTTCTTTC 59.118 38.462 1.03 0.00 45.16 2.62
1427 1440 3.603965 TGGTTCTTTCCCAAGCCTTAA 57.396 42.857 0.00 0.00 0.00 1.85
1536 1549 1.202359 CCCTCAAACAACAACAACCCG 60.202 52.381 0.00 0.00 0.00 5.28
1581 1594 4.082841 TGGTTATCGCACTTGTCGTTACTA 60.083 41.667 0.00 0.00 0.00 1.82
1809 1822 2.686405 GTTTTGGAACTCAACGTCCCTT 59.314 45.455 0.00 0.00 34.67 3.95
2047 2061 4.814234 ACTGTACTTCGAACAAGATGCAAA 59.186 37.500 0.00 0.00 0.00 3.68
2062 2076 1.686052 TGCAAATGTTGGACTTGGGTC 59.314 47.619 0.00 0.00 41.43 4.46
3756 3783 1.774254 TGGGTGGTCTTCTGTGTGATT 59.226 47.619 0.00 0.00 0.00 2.57
3959 3986 9.935241 ATAATCATGTATGTGTTCCATCTAGAC 57.065 33.333 0.00 0.00 34.86 2.59
4408 4435 7.506328 AGTTTTCCAGTACTGACCAAATTAC 57.494 36.000 24.68 13.91 0.00 1.89
4431 4458 5.578727 ACAGAGAGAAGTTAATTAGCTTGCG 59.421 40.000 18.03 4.14 0.00 4.85
4774 4801 1.690219 CCAGCGTCTATGCCTTCCCT 61.690 60.000 0.00 0.00 34.65 4.20
4867 4894 5.362263 ACAGCGTTCTTACCTGAACTAAAA 58.638 37.500 0.00 0.00 42.82 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.282157 ACCAAGTCTACCCCATCAAGC 59.718 52.381 0.00 0.00 0.00 4.01
1 2 3.721087 AACCAAGTCTACCCCATCAAG 57.279 47.619 0.00 0.00 0.00 3.02
2 3 4.463050 AAAACCAAGTCTACCCCATCAA 57.537 40.909 0.00 0.00 0.00 2.57
4 5 3.945921 GCTAAAACCAAGTCTACCCCATC 59.054 47.826 0.00 0.00 0.00 3.51
5 6 3.332485 TGCTAAAACCAAGTCTACCCCAT 59.668 43.478 0.00 0.00 0.00 4.00
6 7 2.712087 TGCTAAAACCAAGTCTACCCCA 59.288 45.455 0.00 0.00 0.00 4.96
7 8 3.428413 TGCTAAAACCAAGTCTACCCC 57.572 47.619 0.00 0.00 0.00 4.95
8 9 4.454847 GTCTTGCTAAAACCAAGTCTACCC 59.545 45.833 0.00 0.00 40.35 3.69
9 10 5.306394 AGTCTTGCTAAAACCAAGTCTACC 58.694 41.667 0.00 0.00 40.35 3.18
10 11 5.989777 TGAGTCTTGCTAAAACCAAGTCTAC 59.010 40.000 0.00 0.00 38.29 2.59
11 12 6.169557 TGAGTCTTGCTAAAACCAAGTCTA 57.830 37.500 0.00 0.00 38.29 2.59
12 13 5.036117 TGAGTCTTGCTAAAACCAAGTCT 57.964 39.130 0.00 0.00 39.94 3.24
13 14 5.948992 ATGAGTCTTGCTAAAACCAAGTC 57.051 39.130 0.00 0.00 40.35 3.01
14 15 5.049405 CGAATGAGTCTTGCTAAAACCAAGT 60.049 40.000 0.00 0.00 40.35 3.16
15 16 5.049405 ACGAATGAGTCTTGCTAAAACCAAG 60.049 40.000 0.00 0.00 40.72 3.61
16 17 4.819630 ACGAATGAGTCTTGCTAAAACCAA 59.180 37.500 0.00 0.00 0.00 3.67
17 18 4.213270 CACGAATGAGTCTTGCTAAAACCA 59.787 41.667 0.00 0.00 0.00 3.67
18 19 4.213482 ACACGAATGAGTCTTGCTAAAACC 59.787 41.667 0.00 0.00 0.00 3.27
19 20 5.344207 ACACGAATGAGTCTTGCTAAAAC 57.656 39.130 0.00 0.00 0.00 2.43
20 21 5.277779 CCAACACGAATGAGTCTTGCTAAAA 60.278 40.000 0.00 0.00 0.00 1.52
21 22 4.213270 CCAACACGAATGAGTCTTGCTAAA 59.787 41.667 0.00 0.00 0.00 1.85
22 23 3.745975 CCAACACGAATGAGTCTTGCTAA 59.254 43.478 0.00 0.00 0.00 3.09
23 24 3.325870 CCAACACGAATGAGTCTTGCTA 58.674 45.455 0.00 0.00 0.00 3.49
24 25 2.146342 CCAACACGAATGAGTCTTGCT 58.854 47.619 0.00 0.00 0.00 3.91
25 26 1.400242 GCCAACACGAATGAGTCTTGC 60.400 52.381 0.00 0.00 0.00 4.01
26 27 1.136252 CGCCAACACGAATGAGTCTTG 60.136 52.381 0.00 0.00 34.06 3.02
27 28 1.148310 CGCCAACACGAATGAGTCTT 58.852 50.000 0.00 0.00 34.06 3.01
28 29 1.291877 GCGCCAACACGAATGAGTCT 61.292 55.000 0.00 0.00 34.06 3.24
29 30 1.132640 GCGCCAACACGAATGAGTC 59.867 57.895 0.00 0.00 34.06 3.36
30 31 2.667318 CGCGCCAACACGAATGAGT 61.667 57.895 0.00 0.00 34.06 3.41
31 32 2.096406 CGCGCCAACACGAATGAG 59.904 61.111 0.00 0.00 34.06 2.90
32 33 2.663520 ACGCGCCAACACGAATGA 60.664 55.556 5.73 0.00 34.06 2.57
33 34 2.499520 CACGCGCCAACACGAATG 60.500 61.111 5.73 0.00 34.06 2.67
34 35 2.970324 ACACGCGCCAACACGAAT 60.970 55.556 5.73 0.00 34.06 3.34
35 36 3.931130 CACACGCGCCAACACGAA 61.931 61.111 5.73 0.00 34.06 3.85
44 45 1.511887 CATAACAAGGCACACGCGC 60.512 57.895 5.73 0.00 39.92 6.86
45 46 1.134487 CCATAACAAGGCACACGCG 59.866 57.895 3.53 3.53 39.92 6.01
46 47 1.506262 CCCATAACAAGGCACACGC 59.494 57.895 0.00 0.00 37.44 5.34
53 54 3.576078 TCCATACTGCCCATAACAAGG 57.424 47.619 0.00 0.00 0.00 3.61
54 55 4.526970 AGTTCCATACTGCCCATAACAAG 58.473 43.478 0.00 0.00 35.19 3.16
55 56 4.584638 AGTTCCATACTGCCCATAACAA 57.415 40.909 0.00 0.00 35.19 2.83
66 67 6.127535 CCAAATCATTTCTGCAGTTCCATACT 60.128 38.462 14.67 0.00 37.68 2.12
67 68 6.038356 CCAAATCATTTCTGCAGTTCCATAC 58.962 40.000 14.67 0.00 0.00 2.39
68 69 5.716228 ACCAAATCATTTCTGCAGTTCCATA 59.284 36.000 14.67 0.00 0.00 2.74
69 70 4.529377 ACCAAATCATTTCTGCAGTTCCAT 59.471 37.500 14.67 0.00 0.00 3.41
70 71 3.896888 ACCAAATCATTTCTGCAGTTCCA 59.103 39.130 14.67 0.00 0.00 3.53
71 72 4.525912 ACCAAATCATTTCTGCAGTTCC 57.474 40.909 14.67 0.00 0.00 3.62
72 73 6.849588 AAAACCAAATCATTTCTGCAGTTC 57.150 33.333 14.67 0.00 0.00 3.01
73 74 8.611757 GTTAAAAACCAAATCATTTCTGCAGTT 58.388 29.630 14.67 0.00 0.00 3.16
74 75 7.768120 TGTTAAAAACCAAATCATTTCTGCAGT 59.232 29.630 14.67 0.00 0.00 4.40
75 76 8.140677 TGTTAAAAACCAAATCATTTCTGCAG 57.859 30.769 7.63 7.63 0.00 4.41
76 77 7.984050 TCTGTTAAAAACCAAATCATTTCTGCA 59.016 29.630 0.00 0.00 0.00 4.41
77 78 8.364129 TCTGTTAAAAACCAAATCATTTCTGC 57.636 30.769 0.00 0.00 0.00 4.26
78 79 8.490355 GCTCTGTTAAAAACCAAATCATTTCTG 58.510 33.333 0.00 0.00 0.00 3.02
79 80 8.203485 TGCTCTGTTAAAAACCAAATCATTTCT 58.797 29.630 0.00 0.00 0.00 2.52
80 81 8.364129 TGCTCTGTTAAAAACCAAATCATTTC 57.636 30.769 0.00 0.00 0.00 2.17
81 82 8.611757 GTTGCTCTGTTAAAAACCAAATCATTT 58.388 29.630 0.00 0.00 0.00 2.32
82 83 7.042791 CGTTGCTCTGTTAAAAACCAAATCATT 60.043 33.333 0.00 0.00 0.00 2.57
83 84 6.420604 CGTTGCTCTGTTAAAAACCAAATCAT 59.579 34.615 0.00 0.00 0.00 2.45
84 85 5.746245 CGTTGCTCTGTTAAAAACCAAATCA 59.254 36.000 0.00 0.00 0.00 2.57
85 86 5.974751 TCGTTGCTCTGTTAAAAACCAAATC 59.025 36.000 0.00 0.00 0.00 2.17
86 87 5.897050 TCGTTGCTCTGTTAAAAACCAAAT 58.103 33.333 0.00 0.00 0.00 2.32
87 88 5.312120 TCGTTGCTCTGTTAAAAACCAAA 57.688 34.783 0.00 0.00 0.00 3.28
88 89 4.966965 TCGTTGCTCTGTTAAAAACCAA 57.033 36.364 0.00 0.00 0.00 3.67
89 90 4.396790 AGTTCGTTGCTCTGTTAAAAACCA 59.603 37.500 0.00 0.00 0.00 3.67
90 91 4.916870 AGTTCGTTGCTCTGTTAAAAACC 58.083 39.130 0.00 0.00 0.00 3.27
91 92 6.525280 TGAAAGTTCGTTGCTCTGTTAAAAAC 59.475 34.615 0.00 0.00 0.00 2.43
92 93 6.613233 TGAAAGTTCGTTGCTCTGTTAAAAA 58.387 32.000 0.00 0.00 0.00 1.94
93 94 6.184580 TGAAAGTTCGTTGCTCTGTTAAAA 57.815 33.333 0.00 0.00 0.00 1.52
94 95 5.804692 TGAAAGTTCGTTGCTCTGTTAAA 57.195 34.783 0.00 0.00 0.00 1.52
95 96 6.371809 AATGAAAGTTCGTTGCTCTGTTAA 57.628 33.333 0.00 0.00 35.24 2.01
96 97 6.371809 AAATGAAAGTTCGTTGCTCTGTTA 57.628 33.333 0.00 0.00 36.59 2.41
97 98 4.900635 AATGAAAGTTCGTTGCTCTGTT 57.099 36.364 0.00 0.00 35.24 3.16
98 99 4.900635 AAATGAAAGTTCGTTGCTCTGT 57.099 36.364 0.00 0.00 36.59 3.41
118 119 3.258123 GCCCTGAAGATAACCTGCAAAAA 59.742 43.478 0.00 0.00 27.65 1.94
119 120 2.825532 GCCCTGAAGATAACCTGCAAAA 59.174 45.455 0.00 0.00 27.65 2.44
120 121 2.446435 GCCCTGAAGATAACCTGCAAA 58.554 47.619 0.00 0.00 27.65 3.68
121 122 1.340991 GGCCCTGAAGATAACCTGCAA 60.341 52.381 0.00 0.00 27.65 4.08
122 123 0.255890 GGCCCTGAAGATAACCTGCA 59.744 55.000 0.00 0.00 0.00 4.41
123 124 0.255890 TGGCCCTGAAGATAACCTGC 59.744 55.000 0.00 0.00 0.00 4.85
124 125 1.281867 TGTGGCCCTGAAGATAACCTG 59.718 52.381 0.00 0.00 0.00 4.00
125 126 1.561542 CTGTGGCCCTGAAGATAACCT 59.438 52.381 0.00 0.00 0.00 3.50
126 127 2.019156 GCTGTGGCCCTGAAGATAACC 61.019 57.143 0.00 0.00 0.00 2.85
127 128 1.383523 GCTGTGGCCCTGAAGATAAC 58.616 55.000 0.00 0.00 0.00 1.89
128 129 0.107703 CGCTGTGGCCCTGAAGATAA 60.108 55.000 0.00 0.00 34.44 1.75
129 130 1.264749 ACGCTGTGGCCCTGAAGATA 61.265 55.000 0.00 0.00 34.44 1.98
130 131 2.129555 AACGCTGTGGCCCTGAAGAT 62.130 55.000 0.00 0.00 34.44 2.40
131 132 2.818169 AACGCTGTGGCCCTGAAGA 61.818 57.895 0.00 0.00 34.44 2.87
132 133 2.281761 AACGCTGTGGCCCTGAAG 60.282 61.111 0.00 0.00 34.44 3.02
133 134 2.410322 ATCAACGCTGTGGCCCTGAA 62.410 55.000 0.00 0.00 32.01 3.02
134 135 2.803155 GATCAACGCTGTGGCCCTGA 62.803 60.000 0.00 0.00 34.44 3.86
135 136 2.360350 ATCAACGCTGTGGCCCTG 60.360 61.111 0.00 0.00 34.44 4.45
136 137 2.045926 GATCAACGCTGTGGCCCT 60.046 61.111 0.00 0.00 34.44 5.19
137 138 3.134127 GGATCAACGCTGTGGCCC 61.134 66.667 0.00 0.00 34.44 5.80
138 139 2.845752 TACGGATCAACGCTGTGGCC 62.846 60.000 0.00 0.00 37.37 5.36
139 140 0.810031 ATACGGATCAACGCTGTGGC 60.810 55.000 0.00 0.00 37.37 5.01
140 141 0.930310 CATACGGATCAACGCTGTGG 59.070 55.000 0.00 0.00 37.37 4.17
141 142 1.324435 CACATACGGATCAACGCTGTG 59.676 52.381 10.81 10.81 41.25 3.66
142 143 1.640428 CACATACGGATCAACGCTGT 58.360 50.000 0.00 0.00 37.37 4.40
143 144 0.930310 CCACATACGGATCAACGCTG 59.070 55.000 0.00 0.00 37.37 5.18
144 145 0.535335 ACCACATACGGATCAACGCT 59.465 50.000 0.00 0.00 37.37 5.07
145 146 0.928229 GACCACATACGGATCAACGC 59.072 55.000 0.00 0.00 37.37 4.84
146 147 1.197055 CGACCACATACGGATCAACG 58.803 55.000 0.00 0.00 40.31 4.10
147 148 0.928229 GCGACCACATACGGATCAAC 59.072 55.000 0.00 0.00 0.00 3.18
148 149 0.821517 AGCGACCACATACGGATCAA 59.178 50.000 0.00 0.00 0.00 2.57
149 150 1.335810 GTAGCGACCACATACGGATCA 59.664 52.381 0.00 0.00 0.00 2.92
150 151 1.607628 AGTAGCGACCACATACGGATC 59.392 52.381 0.00 0.00 0.00 3.36
151 152 1.607628 GAGTAGCGACCACATACGGAT 59.392 52.381 0.00 0.00 0.00 4.18
152 153 1.019673 GAGTAGCGACCACATACGGA 58.980 55.000 0.00 0.00 0.00 4.69
153 154 0.736636 TGAGTAGCGACCACATACGG 59.263 55.000 0.00 0.00 0.00 4.02
154 155 1.400846 AGTGAGTAGCGACCACATACG 59.599 52.381 16.49 0.00 32.33 3.06
155 156 2.223525 GGAGTGAGTAGCGACCACATAC 60.224 54.545 16.49 9.69 32.33 2.39
156 157 2.022195 GGAGTGAGTAGCGACCACATA 58.978 52.381 16.49 0.00 32.33 2.29
157 158 0.818296 GGAGTGAGTAGCGACCACAT 59.182 55.000 16.49 6.07 32.33 3.21
158 159 1.583495 CGGAGTGAGTAGCGACCACA 61.583 60.000 16.49 6.02 32.33 4.17
159 160 1.136984 CGGAGTGAGTAGCGACCAC 59.863 63.158 9.46 9.46 0.00 4.16
160 161 0.393944 ATCGGAGTGAGTAGCGACCA 60.394 55.000 0.00 0.00 0.00 4.02
161 162 0.029567 CATCGGAGTGAGTAGCGACC 59.970 60.000 0.00 0.00 0.00 4.79
162 163 0.029567 CCATCGGAGTGAGTAGCGAC 59.970 60.000 0.00 0.00 0.00 5.19
163 164 0.107361 TCCATCGGAGTGAGTAGCGA 60.107 55.000 0.00 0.00 0.00 4.93
164 165 0.738975 TTCCATCGGAGTGAGTAGCG 59.261 55.000 0.00 0.00 31.21 4.26
165 166 2.025155 TCTTCCATCGGAGTGAGTAGC 58.975 52.381 0.00 0.00 31.21 3.58
166 167 3.017442 TGTCTTCCATCGGAGTGAGTAG 58.983 50.000 0.00 0.00 31.21 2.57
167 168 3.017442 CTGTCTTCCATCGGAGTGAGTA 58.983 50.000 0.00 0.00 31.21 2.59
168 169 1.821753 CTGTCTTCCATCGGAGTGAGT 59.178 52.381 0.00 0.00 31.21 3.41
169 170 1.135915 CCTGTCTTCCATCGGAGTGAG 59.864 57.143 0.00 0.00 31.21 3.51
170 171 1.186200 CCTGTCTTCCATCGGAGTGA 58.814 55.000 0.00 0.00 31.21 3.41
171 172 0.176680 CCCTGTCTTCCATCGGAGTG 59.823 60.000 0.00 0.00 31.21 3.51
172 173 0.978146 CCCCTGTCTTCCATCGGAGT 60.978 60.000 0.00 0.00 31.21 3.85
173 174 1.690219 CCCCCTGTCTTCCATCGGAG 61.690 65.000 0.00 0.00 31.21 4.63
174 175 1.689233 CCCCCTGTCTTCCATCGGA 60.689 63.158 0.00 0.00 0.00 4.55
175 176 2.911143 CCCCCTGTCTTCCATCGG 59.089 66.667 0.00 0.00 0.00 4.18
176 177 1.987807 ATGCCCCCTGTCTTCCATCG 61.988 60.000 0.00 0.00 0.00 3.84
177 178 0.259938 AATGCCCCCTGTCTTCCATC 59.740 55.000 0.00 0.00 0.00 3.51
178 179 0.712380 AAATGCCCCCTGTCTTCCAT 59.288 50.000 0.00 0.00 0.00 3.41
179 180 0.251742 CAAATGCCCCCTGTCTTCCA 60.252 55.000 0.00 0.00 0.00 3.53
180 181 0.972471 CCAAATGCCCCCTGTCTTCC 60.972 60.000 0.00 0.00 0.00 3.46
181 182 1.607801 GCCAAATGCCCCCTGTCTTC 61.608 60.000 0.00 0.00 0.00 2.87
182 183 1.610379 GCCAAATGCCCCCTGTCTT 60.610 57.895 0.00 0.00 0.00 3.01
183 184 1.214305 TAGCCAAATGCCCCCTGTCT 61.214 55.000 0.00 0.00 42.71 3.41
184 185 1.037579 GTAGCCAAATGCCCCCTGTC 61.038 60.000 0.00 0.00 42.71 3.51
185 186 1.000359 GTAGCCAAATGCCCCCTGT 60.000 57.895 0.00 0.00 42.71 4.00
186 187 1.039233 CAGTAGCCAAATGCCCCCTG 61.039 60.000 0.00 0.00 42.71 4.45
187 188 1.307647 CAGTAGCCAAATGCCCCCT 59.692 57.895 0.00 0.00 42.71 4.79
188 189 2.426406 GCAGTAGCCAAATGCCCCC 61.426 63.158 0.00 0.00 42.71 5.40
189 190 2.774799 CGCAGTAGCCAAATGCCCC 61.775 63.158 3.81 0.00 42.71 5.80
190 191 2.046285 ACGCAGTAGCCAAATGCCC 61.046 57.895 3.81 0.00 41.94 5.36
191 192 3.590824 ACGCAGTAGCCAAATGCC 58.409 55.556 3.81 0.00 41.94 4.40
200 201 3.015151 CCCATCGGGTAGACGCAGTAG 62.015 61.905 0.00 0.00 38.75 2.57
201 202 1.105167 CCCATCGGGTAGACGCAGTA 61.105 60.000 0.00 0.00 38.75 2.74
202 203 2.423898 CCCATCGGGTAGACGCAGT 61.424 63.158 0.00 0.00 40.95 4.40
203 204 2.076622 CTCCCATCGGGTAGACGCAG 62.077 65.000 0.00 0.00 44.74 5.18
204 205 2.043752 TCCCATCGGGTAGACGCA 60.044 61.111 0.00 0.00 44.74 5.24
205 206 1.179814 ATCTCCCATCGGGTAGACGC 61.180 60.000 0.00 0.00 44.74 5.19
206 207 0.598562 CATCTCCCATCGGGTAGACG 59.401 60.000 0.00 0.00 44.74 4.18
207 208 0.969894 CCATCTCCCATCGGGTAGAC 59.030 60.000 0.00 0.00 44.74 2.59
208 209 0.561184 ACCATCTCCCATCGGGTAGA 59.439 55.000 0.00 1.72 44.74 2.59
209 210 2.171840 CTACCATCTCCCATCGGGTAG 58.828 57.143 0.00 0.00 44.74 3.18
210 211 1.826042 GCTACCATCTCCCATCGGGTA 60.826 57.143 0.00 0.00 44.74 3.69
211 212 1.122019 GCTACCATCTCCCATCGGGT 61.122 60.000 0.00 0.00 44.74 5.28
212 213 0.833834 AGCTACCATCTCCCATCGGG 60.834 60.000 0.00 0.00 46.11 5.14
213 214 0.605589 GAGCTACCATCTCCCATCGG 59.394 60.000 0.00 0.00 0.00 4.18
214 215 0.242286 CGAGCTACCATCTCCCATCG 59.758 60.000 0.00 0.00 0.00 3.84
215 216 0.605589 CCGAGCTACCATCTCCCATC 59.394 60.000 0.00 0.00 0.00 3.51
216 217 0.833834 CCCGAGCTACCATCTCCCAT 60.834 60.000 0.00 0.00 0.00 4.00
217 218 1.457643 CCCGAGCTACCATCTCCCA 60.458 63.158 0.00 0.00 0.00 4.37
218 219 1.049289 AACCCGAGCTACCATCTCCC 61.049 60.000 0.00 0.00 0.00 4.30
219 220 1.700955 TAACCCGAGCTACCATCTCC 58.299 55.000 0.00 0.00 0.00 3.71
220 221 4.338379 AAATAACCCGAGCTACCATCTC 57.662 45.455 0.00 0.00 0.00 2.75
221 222 4.772886 AAAATAACCCGAGCTACCATCT 57.227 40.909 0.00 0.00 0.00 2.90
222 223 6.238566 GGTTAAAAATAACCCGAGCTACCATC 60.239 42.308 6.51 0.00 42.73 3.51
223 224 5.591472 GGTTAAAAATAACCCGAGCTACCAT 59.409 40.000 6.51 0.00 42.73 3.55
224 225 4.943093 GGTTAAAAATAACCCGAGCTACCA 59.057 41.667 6.51 0.00 42.73 3.25
225 226 4.034394 CGGTTAAAAATAACCCGAGCTACC 59.966 45.833 11.16 0.00 45.03 3.18
226 227 4.034394 CCGGTTAAAAATAACCCGAGCTAC 59.966 45.833 11.16 0.00 45.03 3.58
227 228 4.190772 CCGGTTAAAAATAACCCGAGCTA 58.809 43.478 11.16 0.00 45.03 3.32
228 229 3.011818 CCGGTTAAAAATAACCCGAGCT 58.988 45.455 11.16 0.00 45.03 4.09
229 230 2.749076 ACCGGTTAAAAATAACCCGAGC 59.251 45.455 0.00 0.00 45.03 5.03
230 231 5.155643 CAAACCGGTTAAAAATAACCCGAG 58.844 41.667 22.60 4.54 45.03 4.63
231 232 4.022503 CCAAACCGGTTAAAAATAACCCGA 60.023 41.667 22.60 0.00 45.03 5.14
232 233 4.022503 TCCAAACCGGTTAAAAATAACCCG 60.023 41.667 22.60 7.99 45.03 5.28
233 234 5.465532 TCCAAACCGGTTAAAAATAACCC 57.534 39.130 22.60 0.00 45.03 4.11
234 235 5.870433 CCATCCAAACCGGTTAAAAATAACC 59.130 40.000 22.60 7.54 44.53 2.85
235 236 5.349270 GCCATCCAAACCGGTTAAAAATAAC 59.651 40.000 22.60 3.57 35.57 1.89
236 237 5.480205 GCCATCCAAACCGGTTAAAAATAA 58.520 37.500 22.60 2.60 35.57 1.40
237 238 4.380655 CGCCATCCAAACCGGTTAAAAATA 60.381 41.667 22.60 3.71 35.57 1.40
238 239 3.615351 CGCCATCCAAACCGGTTAAAAAT 60.615 43.478 22.60 9.31 35.57 1.82
239 240 2.288273 CGCCATCCAAACCGGTTAAAAA 60.288 45.455 22.60 7.18 35.57 1.94
240 241 1.269998 CGCCATCCAAACCGGTTAAAA 59.730 47.619 22.60 9.14 35.57 1.52
241 242 0.882474 CGCCATCCAAACCGGTTAAA 59.118 50.000 22.60 9.54 35.57 1.52
242 243 0.961358 CCGCCATCCAAACCGGTTAA 60.961 55.000 22.60 9.93 36.18 2.01
243 244 1.377463 CCGCCATCCAAACCGGTTA 60.377 57.895 22.60 5.30 36.18 2.85
244 245 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
246 247 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
247 248 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
248 249 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
249 250 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
250 251 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
251 252 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
252 253 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
253 254 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
254 255 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
255 256 4.162320 CCTATCCTATTACATGACCGCCAT 59.838 45.833 0.00 0.00 35.44 4.40
256 257 3.513912 CCTATCCTATTACATGACCGCCA 59.486 47.826 0.00 0.00 0.00 5.69
257 258 3.679083 GCCTATCCTATTACATGACCGCC 60.679 52.174 0.00 0.00 0.00 6.13
258 259 3.056107 TGCCTATCCTATTACATGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
259 260 4.801330 TGCCTATCCTATTACATGACCG 57.199 45.455 0.00 0.00 0.00 4.79
260 261 6.054860 ACATGCCTATCCTATTACATGACC 57.945 41.667 0.00 0.00 38.55 4.02
261 262 7.761704 CACTACATGCCTATCCTATTACATGAC 59.238 40.741 0.00 0.00 38.55 3.06
262 263 7.840931 CACTACATGCCTATCCTATTACATGA 58.159 38.462 0.00 0.00 38.55 3.07
295 296 1.142748 CACAACCGGCTGGCAAAAA 59.857 52.632 12.89 0.00 39.70 1.94
296 297 2.790791 CCACAACCGGCTGGCAAAA 61.791 57.895 12.89 0.00 39.70 2.44
297 298 3.222855 CCACAACCGGCTGGCAAA 61.223 61.111 12.89 0.00 39.70 3.68
305 306 3.668491 CGTAAACATAAAGCCACAACCGG 60.668 47.826 0.00 0.00 0.00 5.28
306 307 3.484683 CGTAAACATAAAGCCACAACCG 58.515 45.455 0.00 0.00 0.00 4.44
307 308 3.057806 AGCGTAAACATAAAGCCACAACC 60.058 43.478 0.00 0.00 0.00 3.77
308 309 4.155310 AGCGTAAACATAAAGCCACAAC 57.845 40.909 0.00 0.00 0.00 3.32
309 310 3.120477 CGAGCGTAAACATAAAGCCACAA 60.120 43.478 0.00 0.00 0.00 3.33
310 311 2.413796 CGAGCGTAAACATAAAGCCACA 59.586 45.455 0.00 0.00 0.00 4.17
311 312 2.786700 GCGAGCGTAAACATAAAGCCAC 60.787 50.000 0.00 0.00 0.00 5.01
312 313 1.395608 GCGAGCGTAAACATAAAGCCA 59.604 47.619 0.00 0.00 0.00 4.75
313 314 1.267882 GGCGAGCGTAAACATAAAGCC 60.268 52.381 0.00 0.00 35.00 4.35
314 315 1.664151 AGGCGAGCGTAAACATAAAGC 59.336 47.619 0.00 0.00 0.00 3.51
315 316 2.927477 TCAGGCGAGCGTAAACATAAAG 59.073 45.455 0.00 0.00 0.00 1.85
316 317 2.927477 CTCAGGCGAGCGTAAACATAAA 59.073 45.455 0.00 0.00 31.00 1.40
317 318 2.536365 CTCAGGCGAGCGTAAACATAA 58.464 47.619 0.00 0.00 31.00 1.90
318 319 2.203800 CTCAGGCGAGCGTAAACATA 57.796 50.000 0.00 0.00 31.00 2.29
319 320 3.050703 CTCAGGCGAGCGTAAACAT 57.949 52.632 0.00 0.00 31.00 2.71
320 321 4.571250 CTCAGGCGAGCGTAAACA 57.429 55.556 0.00 0.00 31.00 2.83
332 333 2.771763 AAGACGACAAGCCGCTCAGG 62.772 60.000 0.00 0.00 44.97 3.86
333 334 0.946221 AAAGACGACAAGCCGCTCAG 60.946 55.000 0.00 0.00 0.00 3.35
334 335 0.531974 AAAAGACGACAAGCCGCTCA 60.532 50.000 0.00 0.00 0.00 4.26
335 336 0.586802 AAAAAGACGACAAGCCGCTC 59.413 50.000 0.00 0.00 0.00 5.03
336 337 2.702847 AAAAAGACGACAAGCCGCT 58.297 47.368 0.00 0.00 0.00 5.52
353 354 8.288689 AGTCTTCAGCAGGTTTAAAGTAAAAA 57.711 30.769 0.00 0.00 0.00 1.94
354 355 7.875327 AGTCTTCAGCAGGTTTAAAGTAAAA 57.125 32.000 0.00 0.00 0.00 1.52
355 356 7.875327 AAGTCTTCAGCAGGTTTAAAGTAAA 57.125 32.000 0.00 0.00 0.00 2.01
356 357 7.338449 ACAAAGTCTTCAGCAGGTTTAAAGTAA 59.662 33.333 0.00 0.00 0.00 2.24
357 358 6.826741 ACAAAGTCTTCAGCAGGTTTAAAGTA 59.173 34.615 0.00 0.00 0.00 2.24
358 359 5.652452 ACAAAGTCTTCAGCAGGTTTAAAGT 59.348 36.000 0.00 0.00 0.00 2.66
359 360 5.973565 CACAAAGTCTTCAGCAGGTTTAAAG 59.026 40.000 0.00 0.00 0.00 1.85
360 361 5.650266 TCACAAAGTCTTCAGCAGGTTTAAA 59.350 36.000 0.00 0.00 0.00 1.52
361 362 5.065988 GTCACAAAGTCTTCAGCAGGTTTAA 59.934 40.000 0.00 0.00 0.00 1.52
362 363 4.574828 GTCACAAAGTCTTCAGCAGGTTTA 59.425 41.667 0.00 0.00 0.00 2.01
363 364 3.378427 GTCACAAAGTCTTCAGCAGGTTT 59.622 43.478 0.00 0.00 0.00 3.27
364 365 2.945668 GTCACAAAGTCTTCAGCAGGTT 59.054 45.455 0.00 0.00 0.00 3.50
365 366 2.092968 TGTCACAAAGTCTTCAGCAGGT 60.093 45.455 0.00 0.00 0.00 4.00
366 367 2.289002 GTGTCACAAAGTCTTCAGCAGG 59.711 50.000 0.00 0.00 0.00 4.85
367 368 3.201290 AGTGTCACAAAGTCTTCAGCAG 58.799 45.455 5.62 0.00 0.00 4.24
368 369 3.118629 AGAGTGTCACAAAGTCTTCAGCA 60.119 43.478 5.62 0.00 0.00 4.41
369 370 3.462021 AGAGTGTCACAAAGTCTTCAGC 58.538 45.455 5.62 0.00 0.00 4.26
370 371 4.942852 AGAGAGTGTCACAAAGTCTTCAG 58.057 43.478 5.62 0.00 0.00 3.02
371 372 6.656632 ATAGAGAGTGTCACAAAGTCTTCA 57.343 37.500 5.62 0.00 0.00 3.02
372 373 7.954788 AAATAGAGAGTGTCACAAAGTCTTC 57.045 36.000 5.62 0.00 0.00 2.87
373 374 9.832445 TTAAAATAGAGAGTGTCACAAAGTCTT 57.168 29.630 5.62 0.00 0.00 3.01
394 395 9.448438 AGATGCATACGGCTCATAATATTAAAA 57.552 29.630 0.00 0.00 45.15 1.52
395 396 9.448438 AAGATGCATACGGCTCATAATATTAAA 57.552 29.630 0.00 0.00 45.15 1.52
398 399 9.618890 AATAAGATGCATACGGCTCATAATATT 57.381 29.630 0.00 0.00 45.15 1.28
399 400 9.049523 CAATAAGATGCATACGGCTCATAATAT 57.950 33.333 0.00 0.00 45.15 1.28
400 401 8.257306 TCAATAAGATGCATACGGCTCATAATA 58.743 33.333 0.00 0.00 45.15 0.98
401 402 7.105588 TCAATAAGATGCATACGGCTCATAAT 58.894 34.615 0.00 0.00 45.15 1.28
402 403 6.463360 TCAATAAGATGCATACGGCTCATAA 58.537 36.000 0.00 0.00 45.15 1.90
403 404 6.036577 TCAATAAGATGCATACGGCTCATA 57.963 37.500 0.00 0.00 45.15 2.15
404 405 4.898320 TCAATAAGATGCATACGGCTCAT 58.102 39.130 0.00 0.00 45.15 2.90
405 406 4.335400 TCAATAAGATGCATACGGCTCA 57.665 40.909 0.00 0.00 45.15 4.26
406 407 5.213913 CATCAATAAGATGCATACGGCTC 57.786 43.478 0.00 0.00 46.90 4.70
417 418 3.498121 CCCAGCCTCTGCATCAATAAGAT 60.498 47.826 0.00 0.00 41.13 2.40
418 419 2.158711 CCCAGCCTCTGCATCAATAAGA 60.159 50.000 0.00 0.00 41.13 2.10
419 420 2.228059 CCCAGCCTCTGCATCAATAAG 58.772 52.381 0.00 0.00 41.13 1.73
420 421 1.133699 CCCCAGCCTCTGCATCAATAA 60.134 52.381 0.00 0.00 41.13 1.40
421 422 0.475475 CCCCAGCCTCTGCATCAATA 59.525 55.000 0.00 0.00 41.13 1.90
422 423 1.229359 CCCCAGCCTCTGCATCAAT 59.771 57.895 0.00 0.00 41.13 2.57
423 424 1.792757 AACCCCAGCCTCTGCATCAA 61.793 55.000 0.00 0.00 41.13 2.57
424 425 2.233566 AACCCCAGCCTCTGCATCA 61.234 57.895 0.00 0.00 41.13 3.07
425 426 1.751927 CAACCCCAGCCTCTGCATC 60.752 63.158 0.00 0.00 41.13 3.91
426 427 2.357836 CAACCCCAGCCTCTGCAT 59.642 61.111 0.00 0.00 41.13 3.96
427 428 4.666253 GCAACCCCAGCCTCTGCA 62.666 66.667 0.00 0.00 41.13 4.41
428 429 4.666253 TGCAACCCCAGCCTCTGC 62.666 66.667 0.00 0.00 37.95 4.26
429 430 2.674380 GTGCAACCCCAGCCTCTG 60.674 66.667 0.00 0.00 0.00 3.35
465 466 9.666626 GGCTAGCTTACTCGTATATATAATGTG 57.333 37.037 15.72 0.00 0.00 3.21
466 467 8.557864 CGGCTAGCTTACTCGTATATATAATGT 58.442 37.037 15.72 0.00 0.00 2.71
467 468 8.771766 TCGGCTAGCTTACTCGTATATATAATG 58.228 37.037 15.72 0.00 0.00 1.90
468 469 8.899427 TCGGCTAGCTTACTCGTATATATAAT 57.101 34.615 15.72 0.00 0.00 1.28
469 470 7.984050 ACTCGGCTAGCTTACTCGTATATATAA 59.016 37.037 15.72 0.00 0.00 0.98
470 471 7.437565 CACTCGGCTAGCTTACTCGTATATATA 59.562 40.741 15.72 0.00 0.00 0.86
471 472 6.258287 CACTCGGCTAGCTTACTCGTATATAT 59.742 42.308 15.72 0.00 0.00 0.86
472 473 5.579904 CACTCGGCTAGCTTACTCGTATATA 59.420 44.000 15.72 0.00 0.00 0.86
473 474 4.392445 CACTCGGCTAGCTTACTCGTATAT 59.608 45.833 15.72 0.00 0.00 0.86
474 475 3.744942 CACTCGGCTAGCTTACTCGTATA 59.255 47.826 15.72 0.00 0.00 1.47
475 476 2.548904 CACTCGGCTAGCTTACTCGTAT 59.451 50.000 15.72 0.00 0.00 3.06
476 477 1.938577 CACTCGGCTAGCTTACTCGTA 59.061 52.381 15.72 0.00 0.00 3.43
477 478 0.733729 CACTCGGCTAGCTTACTCGT 59.266 55.000 15.72 1.03 0.00 4.18
478 479 1.015109 TCACTCGGCTAGCTTACTCG 58.985 55.000 15.72 9.37 0.00 4.18
479 480 3.119424 AGTTTCACTCGGCTAGCTTACTC 60.119 47.826 15.72 0.00 0.00 2.59
480 481 2.826725 AGTTTCACTCGGCTAGCTTACT 59.173 45.455 15.72 4.09 0.00 2.24
481 482 3.180613 GAGTTTCACTCGGCTAGCTTAC 58.819 50.000 15.72 0.00 35.28 2.34
482 483 3.505464 GAGTTTCACTCGGCTAGCTTA 57.495 47.619 15.72 1.84 35.28 3.09
483 484 2.371910 GAGTTTCACTCGGCTAGCTT 57.628 50.000 15.72 0.00 35.28 3.74
528 529 4.142609 ACAGTTGGCGATTGTGATAGAT 57.857 40.909 1.57 0.00 0.00 1.98
530 531 4.268644 CAGTACAGTTGGCGATTGTGATAG 59.731 45.833 12.73 0.00 30.13 2.08
573 574 4.307432 CTGTATATGGGTCAACGATGGAC 58.693 47.826 0.00 0.00 34.52 4.02
588 589 1.687123 GGGCGTCAGTCACCTGTATAT 59.313 52.381 0.00 0.00 39.82 0.86
589 590 1.108776 GGGCGTCAGTCACCTGTATA 58.891 55.000 0.00 0.00 39.82 1.47
590 591 0.614979 AGGGCGTCAGTCACCTGTAT 60.615 55.000 0.00 0.00 39.82 2.29
838 840 5.653507 ACACCATTGATGTGATTTGTATGC 58.346 37.500 0.00 0.00 0.00 3.14
861 863 0.524862 GTCGACGGAAGACTGGCTAA 59.475 55.000 0.00 0.00 35.84 3.09
881 883 3.390967 TGGATTCAGAAGACAAGTCACCA 59.609 43.478 2.72 0.00 0.00 4.17
893 895 3.845992 TGGATCTGTCCTTGGATTCAGAA 59.154 43.478 12.10 0.00 45.32 3.02
900 902 5.403558 TCTATAGTGGATCTGTCCTTGGA 57.596 43.478 0.00 0.00 45.32 3.53
974 987 6.762702 TTTAGTTTGGGTTTTCTCTTTCGT 57.237 33.333 0.00 0.00 0.00 3.85
1047 1060 1.064832 GGAAAGGAGAGAAGCAGGCAT 60.065 52.381 0.00 0.00 0.00 4.40
1056 1069 1.352083 CTGGTGGTGGAAAGGAGAGA 58.648 55.000 0.00 0.00 0.00 3.10
1082 1095 1.050988 TAGTGCATGGAGGGGAGAGC 61.051 60.000 0.00 0.00 0.00 4.09
1100 1113 1.248785 ACAGCTCCCGTTCGAAGCTA 61.249 55.000 8.18 0.00 44.30 3.32
1126 1139 4.117661 AAGCGCGTCCCTCTCGTC 62.118 66.667 8.43 0.00 0.00 4.20
1398 1411 4.453480 TGGGAAAGAACCAATGAAGTCT 57.547 40.909 0.00 0.00 34.44 3.24
1401 1414 3.306294 GGCTTGGGAAAGAACCAATGAAG 60.306 47.826 0.00 0.00 46.15 3.02
1416 1429 7.898014 AAGGTTAAGATATTTAAGGCTTGGG 57.102 36.000 10.69 0.00 0.00 4.12
1536 1549 5.406780 CCACTGAAGATCACTTGAGTACAAC 59.593 44.000 0.00 0.00 45.73 3.32
1581 1594 2.919971 GCTCAAGTCGAGGTGCTTT 58.080 52.632 0.00 0.00 42.55 3.51
1809 1822 7.764443 GGACAAGCATACAAGTTCAGATAACTA 59.236 37.037 0.00 0.00 0.00 2.24
2047 2061 5.779771 ACATATTTTGACCCAAGTCCAACAT 59.220 36.000 0.00 0.00 42.81 2.71
2062 2076 3.370104 TGGCCCCACCTAACATATTTTG 58.630 45.455 0.00 0.00 40.22 2.44
4408 4435 5.578727 ACGCAAGCTAATTAACTTCTCTCTG 59.421 40.000 0.00 0.00 45.62 3.35
4431 4458 2.704193 CGCCGAAGAACGTCGTCAC 61.704 63.158 0.00 0.00 38.54 3.67
4774 4801 5.740224 GCCAGAGAGGATTTGATATCGACAA 60.740 44.000 0.00 0.00 41.22 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.