Multiple sequence alignment - TraesCS4A01G454200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G454200 chr4A 100.000 3098 0 0 1 3098 718422178 718425275 0 5722
1 TraesCS4A01G454200 chr4A 85.014 2142 255 34 3 2130 718938192 718936103 0 2117
2 TraesCS4A01G454200 chr4A 81.422 1421 230 16 699 2105 717259800 717258400 0 1131
3 TraesCS4A01G454200 chr7D 92.439 3108 159 42 1 3098 16384320 16381279 0 4368
4 TraesCS4A01G454200 chr7D 90.996 3132 188 38 2 3098 26391921 26388849 0 4135
5 TraesCS4A01G454200 chr7D 81.471 1414 224 18 708 2105 16760003 16758612 0 1125
6 TraesCS4A01G454200 chr7D 81.127 1420 236 18 699 2105 17122608 17124008 0 1109
7 TraesCS4A01G454200 chr7A 94.084 2637 113 19 1 2636 15285499 15282905 0 3965
8 TraesCS4A01G454200 chr7A 81.294 1422 225 23 699 2105 16315559 16316954 0 1114
9 TraesCS4A01G454200 chr7A 81.062 1394 230 16 722 2101 16427682 16429055 0 1081


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G454200 chr4A 718422178 718425275 3097 False 5722 5722 100.000 1 3098 1 chr4A.!!$F1 3097
1 TraesCS4A01G454200 chr4A 718936103 718938192 2089 True 2117 2117 85.014 3 2130 1 chr4A.!!$R2 2127
2 TraesCS4A01G454200 chr4A 717258400 717259800 1400 True 1131 1131 81.422 699 2105 1 chr4A.!!$R1 1406
3 TraesCS4A01G454200 chr7D 16381279 16384320 3041 True 4368 4368 92.439 1 3098 1 chr7D.!!$R1 3097
4 TraesCS4A01G454200 chr7D 26388849 26391921 3072 True 4135 4135 90.996 2 3098 1 chr7D.!!$R3 3096
5 TraesCS4A01G454200 chr7D 16758612 16760003 1391 True 1125 1125 81.471 708 2105 1 chr7D.!!$R2 1397
6 TraesCS4A01G454200 chr7D 17122608 17124008 1400 False 1109 1109 81.127 699 2105 1 chr7D.!!$F1 1406
7 TraesCS4A01G454200 chr7A 15282905 15285499 2594 True 3965 3965 94.084 1 2636 1 chr7A.!!$R1 2635
8 TraesCS4A01G454200 chr7A 16315559 16316954 1395 False 1114 1114 81.294 699 2105 1 chr7A.!!$F1 1406
9 TraesCS4A01G454200 chr7A 16427682 16429055 1373 False 1081 1081 81.062 722 2101 1 chr7A.!!$F2 1379

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 547 0.400213 TCCACCATTGTGTCCTCACC 59.600 55.0 0.0 0.0 43.26 4.02 F
552 560 0.601558 TGTCCTCACCTGTTAGCGAC 59.398 55.0 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 1951 0.180406 CCACCCTTCAACCCTATCCG 59.820 60.0 0.00 0.0 0.0 4.18 R
2178 2199 0.992072 ATCAATCTCGCGACACAACG 59.008 50.0 3.71 0.0 0.0 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.702253 AGTTCTATACTTTCTTCACCTCAGATA 57.298 33.333 0.00 0.00 31.29 1.98
72 73 3.472652 AGCATGGTAAAGTTGTCGACAA 58.527 40.909 26.53 26.53 0.00 3.18
125 126 9.823647 AGATTGACAAAGTATACCTTCATACTG 57.176 33.333 0.00 0.00 40.14 2.74
148 150 0.944386 AAAGCACGCACGAGACAAAT 59.056 45.000 0.00 0.00 0.00 2.32
177 179 3.945436 CGCTGACCGCACTAAACA 58.055 55.556 0.00 0.00 39.08 2.83
200 202 2.279517 CGGCCGACCAGTAGATGC 60.280 66.667 24.07 0.00 34.57 3.91
332 337 2.494471 GGTTTTTAAGGCGGCATAAGGT 59.506 45.455 13.08 0.00 0.00 3.50
515 520 2.579201 GAGAAGGTAGCTGCGGCA 59.421 61.111 21.93 1.29 41.70 5.69
542 547 0.400213 TCCACCATTGTGTCCTCACC 59.600 55.000 0.00 0.00 43.26 4.02
552 560 0.601558 TGTCCTCACCTGTTAGCGAC 59.398 55.000 0.00 0.00 0.00 5.19
553 561 0.601558 GTCCTCACCTGTTAGCGACA 59.398 55.000 0.00 0.00 36.65 4.35
554 562 1.000506 GTCCTCACCTGTTAGCGACAA 59.999 52.381 0.00 0.00 37.93 3.18
560 568 2.480419 CACCTGTTAGCGACAAAGAAGG 59.520 50.000 0.00 0.00 37.93 3.46
562 570 2.480419 CCTGTTAGCGACAAAGAAGGTG 59.520 50.000 0.00 0.00 37.93 4.00
570 578 2.884639 CGACAAAGAAGGTGGGACAAAT 59.115 45.455 0.00 0.00 44.16 2.32
578 586 5.256474 AGAAGGTGGGACAAATGACTTATG 58.744 41.667 0.00 0.00 44.16 1.90
706 714 1.542915 CCTTCATGCTTGTTCTGTGGG 59.457 52.381 0.00 0.00 0.00 4.61
956 977 9.520515 AAGTCAATTGATATTACTGTTGTCCTT 57.479 29.630 12.12 2.15 0.00 3.36
1037 1058 2.223923 GGATCTCGATCTCCAACACCAG 60.224 54.545 8.20 0.00 37.92 4.00
1221 1242 3.493350 CCTTAGACATGATCTTCCCACCG 60.493 52.174 0.00 0.00 39.04 4.94
1398 1419 3.921104 TGGTCATGCTATCTTCTCCTCT 58.079 45.455 0.00 0.00 0.00 3.69
1635 1656 2.626780 GGTGTCCTTCAAAGGCCGC 61.627 63.158 3.79 0.00 46.06 6.53
1668 1689 6.258727 CGAGGATACATCAAAAGCTGTACATT 59.741 38.462 0.00 0.00 41.41 2.71
1729 1750 6.169094 AGAGTTGCTTGCAGCGATAATATAT 58.831 36.000 3.96 0.00 46.26 0.86
1890 1911 1.024579 GGGCATTCTTCTTCGGCGAA 61.025 55.000 22.33 22.33 0.00 4.70
1930 1951 0.179018 ACTGTTGGTGAACCCAGAGC 60.179 55.000 11.36 0.00 46.31 4.09
1950 1971 1.296002 GGATAGGGTTGAAGGGTGGT 58.704 55.000 0.00 0.00 0.00 4.16
1978 1999 2.607499 ACCAGTTGGATCAAAATGGCA 58.393 42.857 25.79 0.00 36.52 4.92
1999 2020 4.823989 GCAGAGTATTTTCATACCCAGCAT 59.176 41.667 0.00 0.00 36.63 3.79
2022 2043 0.321653 GCGAACAAGATGGGGAGTGT 60.322 55.000 0.00 0.00 0.00 3.55
2126 2147 1.067142 TGAGCGGTTGTCTCCATGTAC 60.067 52.381 0.00 0.00 0.00 2.90
2134 2155 3.046283 TGTCTCCATGTACCTGCCTAT 57.954 47.619 0.00 0.00 0.00 2.57
2136 2157 3.895656 TGTCTCCATGTACCTGCCTATAC 59.104 47.826 0.00 0.00 0.00 1.47
2170 2191 1.873591 GTTTGTGTTCAGTCGCTCCAT 59.126 47.619 0.00 0.00 0.00 3.41
2178 2199 0.103208 CAGTCGCTCCATGGGTAGAC 59.897 60.000 13.02 17.32 0.00 2.59
2180 2201 1.379443 TCGCTCCATGGGTAGACGT 60.379 57.895 13.02 0.00 0.00 4.34
2231 2252 1.031235 TGTGTGTTTGCCATCCTGTG 58.969 50.000 0.00 0.00 0.00 3.66
2270 2291 4.216257 ACTTGTGCTACCTATTGTTGCTTG 59.784 41.667 0.00 0.00 44.65 4.01
2282 2303 5.590530 ATTGTTGCTTGTGTTGAACCTTA 57.409 34.783 0.00 0.00 0.00 2.69
2294 2319 8.734218 TGTGTTGAACCTTATTGTGTACTTAA 57.266 30.769 0.00 0.00 0.00 1.85
2295 2320 9.344772 TGTGTTGAACCTTATTGTGTACTTAAT 57.655 29.630 0.00 0.00 0.00 1.40
2376 2401 7.327975 CCTGACCTTGTAGTTATGTGTTATGA 58.672 38.462 0.00 0.00 0.00 2.15
2384 2409 9.508642 TTGTAGTTATGTGTTATGATTGTTCCA 57.491 29.630 0.00 0.00 0.00 3.53
2387 2412 8.579850 AGTTATGTGTTATGATTGTTCCATGT 57.420 30.769 0.00 0.00 0.00 3.21
2417 2442 5.420725 TGTAGCTTGCTTATTCTCCTTCA 57.579 39.130 0.00 0.00 0.00 3.02
2435 2460 7.954666 TCCTTCAAAATGGAGGTAAATAAGG 57.045 36.000 4.64 0.00 0.00 2.69
2553 2580 5.942236 CAGAATGGTGGGTATGGAGAATATG 59.058 44.000 0.00 0.00 0.00 1.78
2567 2594 7.315066 TGGAGAATATGCATGTGGAGTATTA 57.685 36.000 10.16 0.00 0.00 0.98
2703 2734 4.022503 GCAAATCAAGGAGCTTCTTCAGTT 60.023 41.667 3.55 0.00 0.00 3.16
2740 2783 4.854361 GATGTTGGCTATAGCATCGATG 57.146 45.455 25.53 21.27 44.36 3.84
2759 2802 9.895894 CATCGATGCAAAAAGAATTCTAAAATG 57.104 29.630 13.37 7.17 0.00 2.32
2760 2803 9.643693 ATCGATGCAAAAAGAATTCTAAAATGT 57.356 25.926 8.75 0.00 0.00 2.71
2823 2866 8.882415 TCTTAACTGTAACTGGACACTAAAAG 57.118 34.615 0.00 0.00 0.00 2.27
2849 2905 3.010413 GCATGAGCAAACCCTGGCC 62.010 63.158 0.00 0.00 41.58 5.36
2851 2907 3.607084 ATGAGCAAACCCTGGCCCC 62.607 63.158 0.00 0.00 0.00 5.80
2863 2919 3.325753 GGCCCCACAGAGAGCAGT 61.326 66.667 0.00 0.00 0.00 4.40
2885 2941 1.144936 GTGGCCCTTCCTCGATCTG 59.855 63.158 0.00 0.00 35.26 2.90
2913 2969 1.674359 CTTCTAGCTCTGCTCCTCGA 58.326 55.000 0.00 0.00 40.44 4.04
2914 2970 2.229792 CTTCTAGCTCTGCTCCTCGAT 58.770 52.381 0.00 0.00 40.44 3.59
2915 2971 1.890876 TCTAGCTCTGCTCCTCGATC 58.109 55.000 0.00 0.00 40.44 3.69
2916 2972 0.516877 CTAGCTCTGCTCCTCGATCG 59.483 60.000 9.36 9.36 40.44 3.69
2917 2973 1.511318 TAGCTCTGCTCCTCGATCGC 61.511 60.000 11.09 0.00 40.44 4.58
2921 2977 4.841617 TGCTCCTCGATCGCCCCT 62.842 66.667 11.09 0.00 0.00 4.79
2946 3005 3.339731 AACACGATGTTGGTGGCG 58.660 55.556 0.00 0.00 39.45 5.69
2959 3018 3.387091 TGGCGTACATCCGGTGCT 61.387 61.111 0.00 0.00 0.00 4.40
2968 3027 1.340017 ACATCCGGTGCTAGTTTGCAT 60.340 47.619 0.00 0.00 45.23 3.96
2993 3054 3.726291 TTAGGTGCTTGCCAAAACTTC 57.274 42.857 0.00 0.00 0.00 3.01
2997 3058 3.118298 AGGTGCTTGCCAAAACTTCATTT 60.118 39.130 0.00 0.00 0.00 2.32
3005 3066 7.587392 GCTTGCCAAAACTTCATTTATCAAAAC 59.413 33.333 0.00 0.00 0.00 2.43
3009 3070 9.220635 GCCAAAACTTCATTTATCAAAACAAAC 57.779 29.630 0.00 0.00 0.00 2.93
3014 3075 8.045750 ACTTCATTTATCAAAACAAACGTTCG 57.954 30.769 0.00 0.00 0.00 3.95
3028 3090 5.403466 ACAAACGTTCGTAGGATACAAAGAC 59.597 40.000 0.00 0.00 43.24 3.01
3036 3098 4.439700 CGTAGGATACAAAGACGGTCATGT 60.440 45.833 19.08 19.08 43.24 3.21
3051 3113 2.954318 GTCATGTGGAATAGCAAGCCAT 59.046 45.455 0.00 0.00 33.66 4.40
3066 3128 1.819632 CCATAAGTGGCGACCCTGC 60.820 63.158 0.00 0.00 39.01 4.85
3071 3133 2.281484 GTGGCGACCCTGCTCAAA 60.281 61.111 0.00 0.00 34.52 2.69
3072 3134 2.032528 TGGCGACCCTGCTCAAAG 59.967 61.111 0.00 0.00 34.52 2.77
3074 3136 2.032681 GCGACCCTGCTCAAAGGT 59.967 61.111 0.00 0.00 35.34 3.50
3075 3137 1.295423 GCGACCCTGCTCAAAGGTA 59.705 57.895 0.00 0.00 35.34 3.08
3076 3138 0.107654 GCGACCCTGCTCAAAGGTAT 60.108 55.000 0.00 0.00 35.34 2.73
3077 3139 1.656652 CGACCCTGCTCAAAGGTATG 58.343 55.000 0.00 0.00 35.34 2.39
3079 3141 1.559682 GACCCTGCTCAAAGGTATGGA 59.440 52.381 0.00 0.00 35.34 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.472652 TGTCGACAACTTTACCATGCTT 58.527 40.909 17.62 0.00 0.00 3.91
82 83 6.481976 TGTCAATCTTGTCGAATTTGTAGTGT 59.518 34.615 0.00 0.00 0.00 3.55
101 102 8.046708 TGCAGTATGAAGGTATACTTTGTCAAT 58.953 33.333 4.77 0.00 40.86 2.57
125 126 0.247301 GTCTCGTGCGTGCTTTATGC 60.247 55.000 0.00 0.00 41.83 3.14
192 194 7.674120 TGCTATCATCACAATTAGCATCTACT 58.326 34.615 0.00 0.00 35.88 2.57
200 202 8.102800 TGCCTTAATGCTATCATCACAATTAG 57.897 34.615 4.32 0.00 31.27 1.73
332 337 1.757118 CTCTTAGACGGGGCTTGATCA 59.243 52.381 0.00 0.00 0.00 2.92
488 493 0.945813 CTACCTTCTCCGACGCTAGG 59.054 60.000 0.00 0.00 0.00 3.02
515 520 2.440796 CAATGGTGGAGGCCGCAT 60.441 61.111 9.31 0.00 35.42 4.73
542 547 2.480419 CCACCTTCTTTGTCGCTAACAG 59.520 50.000 0.00 0.00 39.58 3.16
552 560 3.891366 AGTCATTTGTCCCACCTTCTTTG 59.109 43.478 0.00 0.00 0.00 2.77
553 561 4.184649 AGTCATTTGTCCCACCTTCTTT 57.815 40.909 0.00 0.00 0.00 2.52
554 562 3.884037 AGTCATTTGTCCCACCTTCTT 57.116 42.857 0.00 0.00 0.00 2.52
560 568 5.705609 AACACATAAGTCATTTGTCCCAC 57.294 39.130 0.00 0.00 27.20 4.61
562 570 6.645003 GGAAAAACACATAAGTCATTTGTCCC 59.355 38.462 3.57 0.00 34.21 4.46
706 714 5.444663 AGGCAAGTGTTGAATCTTTCTTC 57.555 39.130 0.00 0.00 0.00 2.87
862 878 8.053026 AGTACTAGTACAACCACTGATAACTG 57.947 38.462 29.87 0.00 38.48 3.16
1221 1242 2.094906 GGCACAGTTCCGGAAAATAACC 60.095 50.000 20.79 14.36 0.00 2.85
1398 1419 4.353489 TCCATAATTACATGGGATCTGCCA 59.647 41.667 7.29 0.00 44.85 4.92
1596 1617 4.201980 ACCATCTCATGAATCAAATGTGCG 60.202 41.667 0.00 0.00 0.00 5.34
1635 1656 2.742774 TGATGTATCCTCGCAATGACG 58.257 47.619 0.00 0.00 0.00 4.35
1686 1707 7.119846 GCAACTCTTAGTACCTCAACATGAAAT 59.880 37.037 0.00 0.00 0.00 2.17
1729 1750 2.115427 TCGAGAAAGCATGGATGGGTA 58.885 47.619 0.00 0.00 0.00 3.69
1785 1806 3.589288 AGAAGGCTTTCTCATTACCACCT 59.411 43.478 5.05 0.00 39.46 4.00
1890 1911 3.784429 TGGCTGGCCAATAGGTTTT 57.216 47.368 12.27 0.00 44.12 2.43
1930 1951 0.180406 CCACCCTTCAACCCTATCCG 59.820 60.000 0.00 0.00 0.00 4.18
1950 1971 6.381498 TTTTGATCCAACTGGTATACCTGA 57.619 37.500 29.52 15.50 38.22 3.86
1978 1999 7.170965 CCATATGCTGGGTATGAAAATACTCT 58.829 38.462 0.00 0.00 41.82 3.24
1999 2020 1.140852 CTCCCCATCTTGTTCGCCATA 59.859 52.381 0.00 0.00 0.00 2.74
2022 2043 2.094286 CACAAAACAAGGTTCAGGCACA 60.094 45.455 0.00 0.00 0.00 4.57
2080 2101 5.048921 CACAATCTCATACCCAAGATGCATC 60.049 44.000 19.37 19.37 32.62 3.91
2134 2155 4.141287 CACAAACATCAAGTTCCCCTGTA 58.859 43.478 0.00 0.00 40.26 2.74
2136 2157 2.958355 ACACAAACATCAAGTTCCCCTG 59.042 45.455 0.00 0.00 40.26 4.45
2170 2191 1.007038 GCGACACAACGTCTACCCA 60.007 57.895 0.00 0.00 42.98 4.51
2178 2199 0.992072 ATCAATCTCGCGACACAACG 59.008 50.000 3.71 0.00 0.00 4.10
2180 2201 2.362169 TCATCAATCTCGCGACACAA 57.638 45.000 3.71 0.00 0.00 3.33
2188 2209 9.831737 ACAATTTTAAAGTCTTCATCAATCTCG 57.168 29.630 0.00 0.00 0.00 4.04
2231 2252 2.224402 ACAAGTTTCTGACTCCTGGAGC 60.224 50.000 23.43 15.93 37.72 4.70
2297 2322 7.670364 ACTCCTGTTTCTTTTATCCAAAATGG 58.330 34.615 0.00 0.00 39.43 3.16
2345 2370 1.128200 ACTACAAGGTCAGGCACACA 58.872 50.000 0.00 0.00 0.00 3.72
2346 2371 2.256117 AACTACAAGGTCAGGCACAC 57.744 50.000 0.00 0.00 0.00 3.82
2394 2419 5.994250 TGAAGGAGAATAAGCAAGCTACAT 58.006 37.500 0.00 0.00 0.00 2.29
2417 2442 6.667414 TCATGCACCTTATTTACCTCCATTTT 59.333 34.615 0.00 0.00 0.00 1.82
2435 2460 4.225208 GCTTCAGAAAACTTCTCATGCAC 58.775 43.478 0.00 0.00 38.11 4.57
2515 2542 5.508994 CCACCATTCTGTTTCCTACCAAAAC 60.509 44.000 0.00 0.00 37.18 2.43
2553 2580 5.546621 TCCTTAGGTAATACTCCACATGC 57.453 43.478 0.00 0.00 0.00 4.06
2601 2628 9.865321 AAACATCAACATCATAAGAAAATCCAG 57.135 29.630 0.00 0.00 0.00 3.86
2632 2659 8.988064 TTTTACATGAGCCGAAGATCTATATC 57.012 34.615 0.00 0.00 0.00 1.63
2676 2704 1.747924 GAAGCTCCTTGATTTGCCCTC 59.252 52.381 0.00 0.00 0.00 4.30
2677 2705 1.357079 AGAAGCTCCTTGATTTGCCCT 59.643 47.619 0.00 0.00 0.00 5.19
2678 2706 1.844687 AGAAGCTCCTTGATTTGCCC 58.155 50.000 0.00 0.00 0.00 5.36
2680 2708 3.505293 ACTGAAGAAGCTCCTTGATTTGC 59.495 43.478 0.00 0.00 0.00 3.68
2703 2734 0.597568 CATCGGCAGCTGAAAAACCA 59.402 50.000 20.43 0.12 0.00 3.67
2748 2791 9.965824 CCAGCGGAATAAATACATTTTAGAATT 57.034 29.630 0.00 0.00 0.00 2.17
2749 2792 9.131791 ACCAGCGGAATAAATACATTTTAGAAT 57.868 29.630 1.50 0.00 0.00 2.40
2750 2793 8.402472 CACCAGCGGAATAAATACATTTTAGAA 58.598 33.333 1.50 0.00 0.00 2.10
2751 2794 7.012894 CCACCAGCGGAATAAATACATTTTAGA 59.987 37.037 1.50 0.00 0.00 2.10
2752 2795 7.138736 CCACCAGCGGAATAAATACATTTTAG 58.861 38.462 1.50 0.00 0.00 1.85
2753 2796 6.460399 GCCACCAGCGGAATAAATACATTTTA 60.460 38.462 1.50 0.00 0.00 1.52
2754 2797 5.681179 GCCACCAGCGGAATAAATACATTTT 60.681 40.000 1.50 0.00 0.00 1.82
2755 2798 4.202111 GCCACCAGCGGAATAAATACATTT 60.202 41.667 1.50 0.00 0.00 2.32
2756 2799 3.317993 GCCACCAGCGGAATAAATACATT 59.682 43.478 1.50 0.00 0.00 2.71
2757 2800 2.884639 GCCACCAGCGGAATAAATACAT 59.115 45.455 1.50 0.00 0.00 2.29
2758 2801 2.294074 GCCACCAGCGGAATAAATACA 58.706 47.619 1.50 0.00 0.00 2.29
2809 2852 6.769512 TGCTAGAATTCTTTTAGTGTCCAGT 58.230 36.000 14.36 0.00 0.00 4.00
2823 2866 3.950395 AGGGTTTGCTCATGCTAGAATTC 59.050 43.478 0.00 0.00 40.48 2.17
2851 2907 0.602106 CCACACCACTGCTCTCTGTG 60.602 60.000 0.00 0.00 40.51 3.66
2863 2919 3.636231 CGAGGAAGGGCCACACCA 61.636 66.667 6.18 0.00 42.05 4.17
2913 2969 1.675641 GTTGTGCAAGAGGGGCGAT 60.676 57.895 0.00 0.00 0.00 4.58
2914 2970 2.281484 GTTGTGCAAGAGGGGCGA 60.281 61.111 0.00 0.00 0.00 5.54
2915 2971 2.594303 TGTTGTGCAAGAGGGGCG 60.594 61.111 0.00 0.00 0.00 6.13
2916 2972 2.908073 CGTGTTGTGCAAGAGGGGC 61.908 63.158 0.00 0.00 0.00 5.80
2917 2973 0.606401 ATCGTGTTGTGCAAGAGGGG 60.606 55.000 0.00 0.00 38.86 4.79
2946 3005 1.664151 GCAAACTAGCACCGGATGTAC 59.336 52.381 9.46 0.00 0.00 2.90
2978 3039 5.851720 TGATAAATGAAGTTTTGGCAAGCA 58.148 33.333 0.00 0.00 0.00 3.91
2979 3040 6.783892 TTGATAAATGAAGTTTTGGCAAGC 57.216 33.333 0.00 0.00 0.00 4.01
2993 3054 7.799447 TCCTACGAACGTTTGTTTTGATAAATG 59.201 33.333 25.50 3.53 38.78 2.32
2997 3058 7.598118 TGTATCCTACGAACGTTTGTTTTGATA 59.402 33.333 25.50 21.94 38.78 2.15
3005 3066 5.442390 CGTCTTTGTATCCTACGAACGTTTG 60.442 44.000 14.14 14.14 35.66 2.93
3009 3070 3.103738 CCGTCTTTGTATCCTACGAACG 58.896 50.000 0.00 0.00 35.66 3.95
3014 3075 4.804139 CACATGACCGTCTTTGTATCCTAC 59.196 45.833 0.00 0.00 0.00 3.18
3028 3090 1.331756 GCTTGCTATTCCACATGACCG 59.668 52.381 0.00 0.00 0.00 4.79
3036 3098 3.554934 CCACTTATGGCTTGCTATTCCA 58.445 45.455 0.00 0.00 39.82 3.53
3051 3113 1.476845 TTGAGCAGGGTCGCCACTTA 61.477 55.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.