AutoCloner

Multiple sequence alignment - TraesCS4A01G453600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G453600	chr4A	100.000	2843	0	0	1	2843	717970857	717973699	0.000000e+00	5251.0
1	TraesCS4A01G453600	chr4A	80.135	1485	226	27	629	2058	718032784	718034254	0.000000e+00	1044.0
2	TraesCS4A01G453600	chr4A	93.534	232	15	0	631	862	717971262	717971493	2.100000e-91	346.0
3	TraesCS4A01G453600	chr4A	93.534	232	15	0	406	637	717971487	717971718	2.100000e-91	346.0
4	TraesCS4A01G453600	chr4A	78.926	242	24	4	419	637	718032800	718033037	3.820000e-29	139.0
5	TraesCS4A01G453600	chr4A	87.500	88	11	0	547	634	717047800	717047713	5.010000e-18	102.0
6	TraesCS4A01G453600	chr4A	87.838	74	7	2	2080	2153	717268331	717268402	5.050000e-13	86.1
7	TraesCS4A01G453600	chr4A	87.838	74	7	2	2080	2153	717763853	717763782	5.050000e-13	86.1
8	TraesCS4A01G453600	chr4A	90.909	55	3	2	2084	2137	55384414	55384361	3.930000e-09	73.1
9	TraesCS4A01G453600	chr7D	93.243	2871	131	26	2	2843	16706114	16703278	0.000000e+00	4169.0
10	TraesCS4A01G453600	chr7D	80.705	1503	222	28	629	2079	16692357	16690871	0.000000e+00	1107.0
11	TraesCS4A01G453600	chr7D	95.238	231	11	0	406	636	16705487	16705257	1.610000e-97	366.0
12	TraesCS4A01G453600	chr7D	93.966	232	12	2	631	862	16705710	16705481	1.620000e-92	350.0
13	TraesCS4A01G453600	chr7D	71.490	698	161	22	772	1441	17209557	17210244	4.910000e-33	152.0
14	TraesCS4A01G453600	chr7D	87.705	122	11	3	419	540	16692342	16692225	3.820000e-29	139.0
15	TraesCS4A01G453600	chr7D	87.500	88	11	0	547	634	17209557	17209644	5.010000e-18	102.0
16	TraesCS4A01G453600	chr7A	92.484	1703	118	6	958	2655	15689615	15687918	0.000000e+00	2427.0
17	TraesCS4A01G453600	chr7A	92.341	927	48	5	2	913	15690791	15689873	0.000000e+00	1297.0
18	TraesCS4A01G453600	chr7A	92.704	233	16	1	630	862	15690380	15690149	4.540000e-88	335.0
19	TraesCS4A01G453600	chr7A	92.641	231	17	0	406	636	15690155	15689925	1.630000e-87	333.0
20	TraesCS4A01G453600	chr7A	89.516	124	13	0	2646	2769	15687877	15687754	1.050000e-34	158.0
21	TraesCS4A01G453600	chr7A	71.527	583	137	21	772	1335	16603350	16603922	2.300000e-26	130.0
22	TraesCS4A01G453600	chr7A	88.636	88	10	0	547	634	16603350	16603437	1.080000e-19	108.0
23	TraesCS4A01G453600	chr5A	86.809	470	53	4	2189	2650	546233152	546233620	1.510000e-142	516.0
24	TraesCS4A01G453600	chr5A	88.559	236	24	3	2188	2421	677745037	677745271	1.670000e-72	283.0
25	TraesCS4A01G453600	chr5A	87.917	240	25	4	2189	2425	363419259	363419497	2.160000e-71	279.0
26	TraesCS4A01G453600	chr3B	84.582	467	58	8	2189	2646	823188021	823188482	4.320000e-123	451.0
27	TraesCS4A01G453600	chr2A	88.235	357	37	4	2185	2538	278463597	278463243	3.390000e-114	422.0
28	TraesCS4A01G453600	chr2A	89.831	177	13	5	2664	2837	278463254	278463080	3.690000e-54	222.0
29	TraesCS4A01G453600	chr2A	88.889	45	4	1	2109	2153	703338528	703338571	1.000000e-03	54.7
30	TraesCS4A01G453600	chr6D	89.362	235	22	3	2189	2421	445080977	445080744	2.770000e-75	292.0
31	TraesCS4A01G453600	chr1A	89.270	233	22	3	2191	2421	300770371	300770140	3.580000e-74	289.0
32	TraesCS4A01G453600	chr5B	87.243	243	24	7	2184	2421	565894153	565894393	1.300000e-68	270.0
33	TraesCS4A01G453600	chr2B	81.897	116	16	4	2080	2192	24811019	24810906	3.020000e-15	93.5
34	TraesCS4A01G453600	chr7B	88.136	59	4	3	2080	2137	663490075	663490131	1.830000e-07	67.6
35	TraesCS4A01G453600	chr2D	85.246	61	8	1	2080	2139	462195606	462195546	8.500000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G453600	chr4A	717970857	717973699	2842	False	1981.000000	5251	95.689333	1	2843	3	chr4A.!!$F2	2842
1	TraesCS4A01G453600	chr4A	718032784	718034254	1470	False	591.500000	1044	79.530500	419	2058	2	chr4A.!!$F3	1639
2	TraesCS4A01G453600	chr7D	16703278	16706114	2836	True	1628.333333	4169	94.149000	2	2843	3	chr7D.!!$R2	2841
3	TraesCS4A01G453600	chr7D	16690871	16692357	1486	True	623.000000	1107	84.205000	419	2079	2	chr7D.!!$R1	1660
4	TraesCS4A01G453600	chr7A	15687754	15690791	3037	True	910.000000	2427	91.937200	2	2769	5	chr7A.!!$R1	2767
5	TraesCS4A01G453600	chr2A	278463080	278463597	517	True	322.000000	422	89.033000	2185	2837	2	chr2A.!!$R1	652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
143	144	1.464722	CCCACCCAACCCAGTGAAT	59.535	57.895	0.0	0.0	36.01	2.57	F
1278	1531	0.325933	TGGTGCAGATCCCAGAACAG	59.674	55.000	0.0	0.0	0.00	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1455	1708	0.171455	GTTGTTGTTGTTGTCGCCCA	59.829	50.0	0.00	0.0	0.00	5.36	R
2608	2898	0.107214	TCCAGCCGGAACCATTGATC	60.107	55.0	5.05	0.0	38.83	2.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	9.195411	TCAAAATGACTGAATGCATCTAAAAAC	57.805	29.630	0.00	0.00	0.00	2.43
119	120	7.530010	ACCATTTCAACGTTAAGATCTTGATG	58.470	34.615	18.47	17.01	0.00	3.07
143	144	1.464722	CCCACCCAACCCAGTGAAT	59.535	57.895	0.00	0.00	36.01	2.57
244	245	5.755861	GGAGGATTACAAACTCATAGCTCAC	59.244	44.000	0.00	0.00	32.98	3.51
246	262	5.426833	AGGATTACAAACTCATAGCTCACCT	59.573	40.000	0.00	0.00	0.00	4.00
360	376	8.807948	AGTAATGCATGTTTATCTTACCAACT	57.192	30.769	0.00	0.00	0.00	3.16
409	425	6.437162	CCAGGGAACAATTAATCAAGGAAAGA	59.563	38.462	0.00	0.00	0.00	2.52
438	454	6.681777	AGTGTGTGAATGGAAAAGCTAATTC	58.318	36.000	4.06	4.06	0.00	2.17
451	467	8.613482	GGAAAAGCTAATTCATACCTAACTCAC	58.387	37.037	12.65	0.00	0.00	3.51
465	481	7.166691	ACCTAACTCACGTACAAGATTACAT	57.833	36.000	0.00	0.00	0.00	2.29
714	730	7.388500	CAGAATGGGTTTTGCAAAAAGATATGT	59.612	33.333	25.40	8.77	0.00	2.29
741	757	6.437162	ACCCAAACTATGCTTGACATGTAAAT	59.563	34.615	0.00	0.00	40.06	1.40
839	878	3.566322	GTGCCACCTAACACAACAATACA	59.434	43.478	0.00	0.00	36.77	2.29
846	885	7.298122	CACCTAACACAACAATACAAGATGAC	58.702	38.462	0.00	0.00	0.00	3.06
910	949	4.158394	GGAATGGAATGCAGCAAACTAGAA	59.842	41.667	0.00	0.00	0.00	2.10
915	954	2.995466	TGCAGCAAACTAGAACATGC	57.005	45.000	0.00	1.17	39.06	4.06
945	984	7.969536	ATAAGTATGCATGTACCATGAAGAC	57.030	36.000	10.16	5.24	0.00	3.01
947	986	3.650281	ATGCATGTACCATGAAGACCA	57.350	42.857	0.00	0.00	0.00	4.02
949	988	2.039613	TGCATGTACCATGAAGACCACA	59.960	45.455	8.34	0.00	0.00	4.17
975	1227	6.068010	TCAACCTTTAGACAACCACAATCAT	58.932	36.000	0.00	0.00	0.00	2.45
977	1229	5.010282	ACCTTTAGACAACCACAATCATCC	58.990	41.667	0.00	0.00	0.00	3.51
1071	1324	1.901833	ACTGCCCAATTGGAAACCATC	59.098	47.619	26.60	6.14	37.39	3.51
1111	1364	0.752054	ATGCCAACACCACCAACAAG	59.248	50.000	0.00	0.00	0.00	3.16
1170	1423	3.002862	GTGTGGCTTTCGTACAACATCAA	59.997	43.478	0.00	0.00	0.00	2.57
1183	1436	2.424601	CAACATCAATGTAGCCCAGTGG	59.575	50.000	0.63	0.63	40.80	4.00
1278	1531	0.325933	TGGTGCAGATCCCAGAACAG	59.674	55.000	0.00	0.00	0.00	3.16
1319	1572	0.749649	AGCGTGGAAGAGGCTATCAG	59.250	55.000	0.00	0.00	44.08	2.90
1339	1592	1.110442	TCAACAACAGCCCCAACAAG	58.890	50.000	0.00	0.00	0.00	3.16
1455	1708	0.316204	GCCAGCAACAGCATCAACTT	59.684	50.000	0.00	0.00	0.00	2.66
1627	1883	1.063341	AGCTAGCACAGATCCCAGAGA	60.063	52.381	18.83	0.00	0.00	3.10
1698	1954	2.828520	ACAACATCACCAACCACAACAA	59.171	40.909	0.00	0.00	0.00	2.83
1875	2154	8.891671	ATATAGCAGTGGCAAAATAAAAATGG	57.108	30.769	0.00	0.00	44.61	3.16
1915	2194	5.584649	GTGCCTAGTACTAATTGCAACATGA	59.415	40.000	17.93	0.00	0.00	3.07
2107	2392	1.971357	AGAACGAAGGCTCAAGAAGGA	59.029	47.619	0.00	0.00	0.00	3.36
2166	2451	5.353956	TGAAATTACAACGACCATCATCCAG	59.646	40.000	0.00	0.00	0.00	3.86
2170	2455	1.131126	CAACGACCATCATCCAGCAAC	59.869	52.381	0.00	0.00	0.00	4.17
2479	2769	4.170062	CGCGTCGCTCCGGAGTAA	62.170	66.667	31.43	17.67	0.00	2.24
2555	2845	2.281070	CGCTGTGCAGGGTTGTCT	60.281	61.111	7.92	0.00	36.72	3.41
2579	2869	1.546029	TGACAGATCACAAGGAGACGG	59.454	52.381	0.00	0.00	0.00	4.79
2586	2876	1.677966	ACAAGGAGACGGCGAGCTA	60.678	57.895	16.62	0.00	0.00	3.32
2600	2890	2.020720	CGAGCTATGACCTCAGTCTGT	58.979	52.381	0.00	0.00	43.91	3.41
2601	2891	2.223456	CGAGCTATGACCTCAGTCTGTG	60.223	54.545	0.00	0.00	43.91	3.66
2608	2898	1.869767	GACCTCAGTCTGTGCAAACTG	59.130	52.381	15.53	15.53	43.41	3.16
2625	2915	1.019673	CTGATCAATGGTTCCGGCTG	58.980	55.000	0.00	0.00	0.00	4.85
2700	3040	7.055667	TGTTTAGAATGCTAGATCGATTCCT	57.944	36.000	0.00	0.00	0.00	3.36
2707	3047	8.370940	AGAATGCTAGATCGATTCCTTCAAATA	58.629	33.333	0.00	0.00	0.00	1.40
2711	3051	6.926272	GCTAGATCGATTCCTTCAAATACAGT	59.074	38.462	0.00	0.00	0.00	3.55
2731	3072	0.095417	GCACGTACTGCAAAGCTAGC	59.905	55.000	6.62	6.62	46.29	3.42
2732	3073	1.714794	CACGTACTGCAAAGCTAGCT	58.285	50.000	12.68	12.68	0.00	3.32
2733	3074	1.656095	CACGTACTGCAAAGCTAGCTC	59.344	52.381	19.65	6.31	0.00	4.09
2734	3075	1.272490	ACGTACTGCAAAGCTAGCTCA	59.728	47.619	19.65	11.11	0.00	4.26
2735	3076	1.656095	CGTACTGCAAAGCTAGCTCAC	59.344	52.381	19.65	11.04	0.00	3.51
2736	3077	2.688507	GTACTGCAAAGCTAGCTCACA	58.311	47.619	19.65	15.09	0.00	3.58
2737	3078	2.260844	ACTGCAAAGCTAGCTCACAA	57.739	45.000	19.65	3.83	0.00	3.33
2738	3079	2.787994	ACTGCAAAGCTAGCTCACAAT	58.212	42.857	19.65	3.61	0.00	2.71
2739	3080	2.746362	ACTGCAAAGCTAGCTCACAATC	59.254	45.455	19.65	5.17	0.00	2.67
2740	3081	2.745821	CTGCAAAGCTAGCTCACAATCA	59.254	45.455	19.65	9.40	0.00	2.57
2741	3082	2.485426	TGCAAAGCTAGCTCACAATCAC	59.515	45.455	19.65	2.83	0.00	3.06
2742	3083	2.485426	GCAAAGCTAGCTCACAATCACA	59.515	45.455	19.65	0.00	0.00	3.58
2743	3084	3.669023	GCAAAGCTAGCTCACAATCACAC	60.669	47.826	19.65	0.00	0.00	3.82
2744	3085	3.407424	AAGCTAGCTCACAATCACACA	57.593	42.857	19.65	0.00	0.00	3.72
2745	3086	3.407424	AGCTAGCTCACAATCACACAA	57.593	42.857	12.68	0.00	0.00	3.33
2746	3087	3.332919	AGCTAGCTCACAATCACACAAG	58.667	45.455	12.68	0.00	0.00	3.16
2747	3088	2.159599	GCTAGCTCACAATCACACAAGC	60.160	50.000	7.70	0.00	0.00	4.01
2825	3222	6.406370	TCGATTGATTTTCCTCTAGAAGCAA	58.594	36.000	0.00	0.00	35.40	3.91

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	0.719465	CCCGATGTAGTGAAACGTGC	59.281	55.000	0.00	0.00	45.86	5.34
119	120	4.442454	GGGTTGGGTGGGCCTAGC	62.442	72.222	10.28	10.28	34.45	3.42
244	245	6.038161	TGTTGTGAAACTGATCTTGTACAAGG	59.962	38.462	30.35	18.81	37.04	3.61
246	262	6.993786	TGTTGTGAAACTGATCTTGTACAA	57.006	33.333	8.28	8.28	38.04	2.41
401	417	2.169769	TCACACACTCCGTTCTTTCCTT	59.830	45.455	0.00	0.00	0.00	3.36
404	420	3.058914	CCATTCACACACTCCGTTCTTTC	60.059	47.826	0.00	0.00	0.00	2.62
409	425	2.631160	TTCCATTCACACACTCCGTT	57.369	45.000	0.00	0.00	0.00	4.44
438	454	8.186163	TGTAATCTTGTACGTGAGTTAGGTATG	58.814	37.037	0.00	0.00	46.40	2.39
451	467	7.431084	GCAAAACCCATTATGTAATCTTGTACG	59.569	37.037	0.00	0.00	0.00	3.67
465	481	6.312426	CGCATATCTTTTTGCAAAACCCATTA	59.688	34.615	23.79	11.65	38.80	1.90
714	730	3.500448	TGTCAAGCATAGTTTGGGTCA	57.500	42.857	0.00	0.00	0.00	4.02
741	757	7.166167	CCTGGATATGACTCATCAATCATCAA	58.834	38.462	0.00	0.00	38.69	2.57
762	778	3.511146	ACTTTTTGGCACATATCACCTGG	59.489	43.478	0.00	0.00	39.30	4.45
839	878	6.267471	TGGATGCTTTTTAAACTGGTCATCTT	59.733	34.615	11.50	0.00	32.19	2.40
846	885	5.930405	GCAAATGGATGCTTTTTAAACTGG	58.070	37.500	0.00	0.00	43.06	4.00
945	984	4.582656	TGGTTGTCTAAAGGTTGATTGTGG	59.417	41.667	0.00	0.00	0.00	4.17
947	986	5.197451	TGTGGTTGTCTAAAGGTTGATTGT	58.803	37.500	0.00	0.00	0.00	2.71
949	988	6.549364	TGATTGTGGTTGTCTAAAGGTTGATT	59.451	34.615	0.00	0.00	0.00	2.57
975	1227	1.611673	GCTAGCCTCAAGTTGCTTGGA	60.612	52.381	2.29	0.00	41.33	3.53
977	1229	0.807496	GGCTAGCCTCAAGTTGCTTG	59.193	55.000	27.17	2.71	42.25	4.01
1052	1305	2.093869	CAGATGGTTTCCAATTGGGCAG	60.094	50.000	24.29	0.00	36.95	4.85
1170	1423	0.328258	GTGTTCCCACTGGGCTACAT	59.672	55.000	19.24	0.00	43.94	2.29
1183	1436	2.296190	GTGTTTGGGAGAATGGTGTTCC	59.704	50.000	0.00	0.00	0.00	3.62
1319	1572	0.820871	TTGTTGGGGCTGTTGTTGAC	59.179	50.000	0.00	0.00	0.00	3.18
1339	1592	1.753073	CTGTTGGGGCTCATTCCATTC	59.247	52.381	0.00	0.00	32.48	2.67
1449	1702	0.736053	GTTGTTGTCGCCCAAGTTGA	59.264	50.000	3.87	0.00	32.51	3.18
1455	1708	0.171455	GTTGTTGTTGTTGTCGCCCA	59.829	50.000	0.00	0.00	0.00	5.36
1649	1905	5.302059	TGCCTGATAGACTCTACCACATTAC	59.698	44.000	0.00	0.00	0.00	1.89
1698	1954	2.039084	CAGGCCCTCAAGTTGTACTTCT	59.961	50.000	0.00	0.00	36.03	2.85
2327	2615	7.935338	AAACTTGTCATTTCATGTGTCATTC	57.065	32.000	0.00	0.00	0.00	2.67
2434	2724	4.314440	TCCTGTGCCACTCGGTGC	62.314	66.667	0.00	0.00	31.34	5.01
2479	2769	0.252197	GGAAGGCCTACATCGGTTGT	59.748	55.000	5.16	0.00	42.62	3.32
2555	2845	2.568509	TCTCCTTGTGATCTGTCATGCA	59.431	45.455	0.00	0.00	36.60	3.96
2568	2858	1.038130	ATAGCTCGCCGTCTCCTTGT	61.038	55.000	0.00	0.00	0.00	3.16
2579	2869	1.028905	AGACTGAGGTCATAGCTCGC	58.971	55.000	0.00	0.00	45.17	5.03
2586	2876	2.105477	AGTTTGCACAGACTGAGGTCAT	59.895	45.455	10.08	0.00	44.36	3.06
2600	2890	2.228582	CGGAACCATTGATCAGTTTGCA	59.771	45.455	0.00	0.00	0.00	4.08
2601	2891	2.415893	CCGGAACCATTGATCAGTTTGC	60.416	50.000	0.00	0.00	0.00	3.68
2608	2898	0.107214	TCCAGCCGGAACCATTGATC	60.107	55.000	5.05	0.00	38.83	2.92
2625	2915	0.955919	CCGCCTTGACCAGTTTCTCC	60.956	60.000	0.00	0.00	0.00	3.71
2700	3040	4.983215	CAGTACGTGCACTGTATTTGAA	57.017	40.909	16.19	0.00	40.89	2.69
2727	3068	3.069289	TGCTTGTGTGATTGTGAGCTAG	58.931	45.455	0.00	0.00	0.00	3.42
2728	3069	3.069289	CTGCTTGTGTGATTGTGAGCTA	58.931	45.455	0.00	0.00	0.00	3.32
2729	3070	1.878088	CTGCTTGTGTGATTGTGAGCT	59.122	47.619	0.00	0.00	0.00	4.09
2730	3071	1.665161	GCTGCTTGTGTGATTGTGAGC	60.665	52.381	0.00	0.00	0.00	4.26
2731	3072	1.878088	AGCTGCTTGTGTGATTGTGAG	59.122	47.619	0.00	0.00	0.00	3.51
2732	3073	1.875514	GAGCTGCTTGTGTGATTGTGA	59.124	47.619	2.53	0.00	0.00	3.58
2733	3074	1.399343	CGAGCTGCTTGTGTGATTGTG	60.399	52.381	2.53	0.00	0.00	3.33
2734	3075	0.870393	CGAGCTGCTTGTGTGATTGT	59.130	50.000	2.53	0.00	0.00	2.71
2735	3076	1.150827	TCGAGCTGCTTGTGTGATTG	58.849	50.000	16.18	0.00	0.00	2.67
2736	3077	2.105006	ATCGAGCTGCTTGTGTGATT	57.895	45.000	16.18	0.00	0.00	2.57
2737	3078	1.736126	CAATCGAGCTGCTTGTGTGAT	59.264	47.619	16.18	6.62	0.00	3.06
2738	3079	1.150827	CAATCGAGCTGCTTGTGTGA	58.849	50.000	16.18	4.65	0.00	3.58
2739	3080	1.150827	TCAATCGAGCTGCTTGTGTG	58.849	50.000	16.18	14.42	0.00	3.82
2740	3081	2.105006	ATCAATCGAGCTGCTTGTGT	57.895	45.000	16.18	4.50	0.00	3.72
2741	3082	3.482722	AAATCAATCGAGCTGCTTGTG	57.517	42.857	16.18	8.72	0.00	3.33
2742	3083	3.119708	GGAAAATCAATCGAGCTGCTTGT	60.120	43.478	16.18	1.87	0.00	3.16
2743	3084	3.432782	GGAAAATCAATCGAGCTGCTTG	58.567	45.455	10.76	10.76	0.00	4.01
2744	3085	2.424956	GGGAAAATCAATCGAGCTGCTT	59.575	45.455	2.53	0.00	0.00	3.91
2745	3086	2.019984	GGGAAAATCAATCGAGCTGCT	58.980	47.619	0.00	0.00	0.00	4.24
2746	3087	1.066152	GGGGAAAATCAATCGAGCTGC	59.934	52.381	0.00	0.00	0.00	5.25
2747	3088	2.648059	AGGGGAAAATCAATCGAGCTG	58.352	47.619	0.00	0.00	0.00	4.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.