Multiple sequence alignment - TraesCS4A01G453400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G453400 chr4A 100.000 6587 0 0 1 6587 717959030 717965616 0.000000e+00 12165.0
1 TraesCS4A01G453400 chr4A 81.454 1224 144 38 4474 5682 717959494 717960649 0.000000e+00 926.0
2 TraesCS4A01G453400 chr4A 81.454 1224 144 34 465 1620 717963503 717964711 0.000000e+00 926.0
3 TraesCS4A01G453400 chr4A 92.271 414 26 5 2994 3404 583761153 583761563 3.420000e-162 582.0
4 TraesCS4A01G453400 chr4A 83.473 478 65 9 6024 6490 717960777 717961251 3.650000e-117 433.0
5 TraesCS4A01G453400 chr4A 83.473 478 65 9 1748 2222 717965053 717965519 3.650000e-117 433.0
6 TraesCS4A01G453400 chr4A 95.769 260 10 1 3591 3850 90433900 90433642 1.020000e-112 418.0
7 TraesCS4A01G453400 chr4A 83.851 161 15 7 3898 4049 450875795 450875637 6.890000e-30 143.0
8 TraesCS4A01G453400 chr4A 96.364 55 2 0 3845 3899 717961844 717961898 2.530000e-14 91.6
9 TraesCS4A01G453400 chr4A 96.364 55 2 0 2815 2869 717962874 717962928 2.530000e-14 91.6
10 TraesCS4A01G453400 chr7A 92.114 1864 88 11 4181 6009 15698883 15697044 0.000000e+00 2573.0
11 TraesCS4A01G453400 chr7A 93.645 1070 51 11 1731 2792 15701194 15700134 0.000000e+00 1583.0
12 TraesCS4A01G453400 chr7A 90.572 1188 81 10 573 1730 15702669 15701483 0.000000e+00 1544.0
13 TraesCS4A01G453400 chr7A 83.157 1324 160 27 458 1731 15698597 15697287 0.000000e+00 1151.0
14 TraesCS4A01G453400 chr7A 81.436 1476 180 42 4592 6008 15702663 15701223 0.000000e+00 1122.0
15 TraesCS4A01G453400 chr7A 86.783 802 70 10 4492 5291 15957993 15957226 0.000000e+00 861.0
16 TraesCS4A01G453400 chr7A 90.973 565 39 3 6022 6586 15697000 15696448 0.000000e+00 750.0
17 TraesCS4A01G453400 chr7A 83.420 772 92 18 484 1223 15957993 15957226 0.000000e+00 684.0
18 TraesCS4A01G453400 chr7A 84.242 660 68 16 5889 6520 15847188 15846537 1.570000e-170 610.0
19 TraesCS4A01G453400 chr7A 91.546 414 29 6 2992 3402 262374885 262375295 3.450000e-157 566.0
20 TraesCS4A01G453400 chr7A 86.061 495 56 8 1731 2223 15847049 15846566 2.720000e-143 520.0
21 TraesCS4A01G453400 chr7A 89.744 390 27 7 190 577 15708376 15707998 2.760000e-133 486.0
22 TraesCS4A01G453400 chr7A 84.679 483 60 11 6023 6496 15701177 15700700 2.780000e-128 470.0
23 TraesCS4A01G453400 chr7A 81.560 564 63 24 4179 4712 16366406 16366958 1.700000e-115 427.0
24 TraesCS4A01G453400 chr7A 80.483 497 71 14 1731 2223 15697016 15696542 2.260000e-94 357.0
25 TraesCS4A01G453400 chr7A 96.296 189 4 1 3406 3594 15699904 15699719 2.310000e-79 307.0
26 TraesCS4A01G453400 chr7A 94.444 198 11 0 3893 4090 15699097 15698900 8.300000e-79 305.0
27 TraesCS4A01G453400 chr7A 92.823 209 6 5 2793 2994 15700104 15699898 1.800000e-75 294.0
28 TraesCS4A01G453400 chr7A 85.532 235 29 4 465 697 16366726 16366957 2.370000e-59 241.0
29 TraesCS4A01G453400 chr7A 87.952 83 7 2 3406 3488 615048281 615048360 1.960000e-15 95.3
30 TraesCS4A01G453400 chr7A 96.078 51 2 0 3847 3897 15700080 15700030 4.230000e-12 84.2
31 TraesCS4A01G453400 chr7D 94.314 1231 59 6 4170 5398 16712361 16711140 0.000000e+00 1875.0
32 TraesCS4A01G453400 chr7D 88.752 1298 105 15 465 1730 16716393 16715105 0.000000e+00 1550.0
33 TraesCS4A01G453400 chr7D 87.394 1293 82 26 1731 2994 16714626 16713386 0.000000e+00 1410.0
34 TraesCS4A01G453400 chr7D 80.710 1550 209 42 4377 5885 16716489 16714989 0.000000e+00 1123.0
35 TraesCS4A01G453400 chr7D 95.583 566 21 1 6022 6587 16710497 16709936 0.000000e+00 904.0
36 TraesCS4A01G453400 chr7D 92.212 642 23 2 5392 6009 16711179 16710541 0.000000e+00 883.0
37 TraesCS4A01G453400 chr7D 81.393 919 110 29 471 1332 16712052 16711138 0.000000e+00 693.0
38 TraesCS4A01G453400 chr7D 84.124 485 63 12 6023 6498 16714609 16714130 2.160000e-124 457.0
39 TraesCS4A01G453400 chr7D 82.897 497 66 9 1731 2223 16710513 16710032 4.720000e-116 429.0
40 TraesCS4A01G453400 chr7D 95.455 198 9 0 3893 4090 16712587 16712390 3.830000e-82 316.0
41 TraesCS4A01G453400 chr7D 96.850 127 4 0 3466 3592 16713248 16713122 5.170000e-51 213.0
42 TraesCS4A01G453400 chr7D 85.185 162 19 5 3893 4049 466053257 466053096 1.900000e-35 161.0
43 TraesCS4A01G453400 chr7D 92.593 81 6 0 328 408 16716417 16716337 4.170000e-22 117.0
44 TraesCS4A01G453400 chr7D 97.500 40 1 0 3858 3897 16713556 16713517 1.190000e-07 69.4
45 TraesCS4A01G453400 chr7D 100.000 32 0 0 4140 4171 167363154 167363185 7.130000e-05 60.2
46 TraesCS4A01G453400 chr2A 91.807 415 27 6 2994 3403 761013205 761012793 7.410000e-159 571.0
47 TraesCS4A01G453400 chr2A 91.525 413 29 6 2994 3404 71800378 71800786 1.240000e-156 564.0
48 TraesCS4A01G453400 chr2A 90.692 419 34 5 2992 3406 630098313 630098730 2.680000e-153 553.0
49 TraesCS4A01G453400 chr2A 91.063 414 30 6 2994 3403 681507126 681507536 2.680000e-153 553.0
50 TraesCS4A01G453400 chr2A 89.655 58 5 1 41 97 8453697 8453754 9.160000e-09 73.1
51 TraesCS4A01G453400 chr6B 91.768 413 24 9 2994 3402 45770189 45769783 3.450000e-157 566.0
52 TraesCS4A01G453400 chr6B 90.867 427 32 7 2991 3413 52690858 52690435 3.450000e-157 566.0
53 TraesCS4A01G453400 chr6B 88.889 81 7 2 3409 3489 431936369 431936291 1.510000e-16 99.0
54 TraesCS4A01G453400 chr6B 88.889 81 5 3 3409 3489 550782349 550782273 5.440000e-16 97.1
55 TraesCS4A01G453400 chr6B 85.246 61 9 0 4941 5001 43857953 43858013 5.510000e-06 63.9
56 TraesCS4A01G453400 chr6B 85.246 61 9 0 4941 5001 43868298 43868358 5.510000e-06 63.9
57 TraesCS4A01G453400 chr6B 83.607 61 10 0 4941 5001 44061727 44061787 2.570000e-04 58.4
58 TraesCS4A01G453400 chr6D 90.909 418 27 7 2988 3402 320695977 320695568 9.650000e-153 551.0
59 TraesCS4A01G453400 chr6D 86.813 91 11 1 2904 2994 221986394 221986483 4.200000e-17 100.0
60 TraesCS4A01G453400 chr6D 86.207 87 10 2 2898 2984 237351738 237351822 7.030000e-15 93.5
61 TraesCS4A01G453400 chr6D 88.710 62 7 0 2899 2960 320114868 320114807 7.080000e-10 76.8
62 TraesCS4A01G453400 chr6D 82.278 79 11 2 15 93 428579814 428579739 1.530000e-06 65.8
63 TraesCS4A01G453400 chr6A 98.846 260 3 0 3591 3850 57708278 57708537 1.290000e-126 464.0
64 TraesCS4A01G453400 chr6A 92.000 75 5 1 2915 2989 1838449 1838522 3.250000e-18 104.0
65 TraesCS4A01G453400 chr6A 83.333 96 13 3 2900 2994 555519383 555519290 1.180000e-12 86.1
66 TraesCS4A01G453400 chr6A 92.000 50 3 1 4090 4138 329971207 329971256 1.190000e-07 69.4
67 TraesCS4A01G453400 chr6A 89.091 55 6 0 41 95 534983118 534983172 1.190000e-07 69.4
68 TraesCS4A01G453400 chr6A 86.885 61 5 3 4079 4138 611411172 611411230 1.530000e-06 65.8
69 TraesCS4A01G453400 chr7B 98.077 260 5 0 3591 3850 304933182 304933441 2.800000e-123 453.0
70 TraesCS4A01G453400 chr7B 89.873 79 4 3 3411 3489 665944935 665945009 1.510000e-16 99.0
71 TraesCS4A01G453400 chr7B 84.337 83 12 1 13 95 54899163 54899082 5.480000e-11 80.5
72 TraesCS4A01G453400 chr7B 83.544 79 13 0 13 91 481831178 481831100 2.550000e-09 75.0
73 TraesCS4A01G453400 chr3B 96.715 274 6 3 3591 3861 564250197 564249924 2.800000e-123 453.0
74 TraesCS4A01G453400 chr3B 97.692 260 6 0 3591 3850 786512812 786512553 1.300000e-121 448.0
75 TraesCS4A01G453400 chr3B 82.955 88 14 1 11 98 62667395 62667481 1.970000e-10 78.7
76 TraesCS4A01G453400 chr1B 96.970 264 7 1 3591 3853 395981903 395982166 6.060000e-120 442.0
77 TraesCS4A01G453400 chr1B 79.651 172 22 5 3891 4049 216468170 216467999 1.940000e-20 111.0
78 TraesCS4A01G453400 chr1B 86.364 88 8 2 3403 3490 586282212 586282295 7.030000e-15 93.5
79 TraesCS4A01G453400 chr1B 93.750 48 1 2 4092 4138 132944343 132944389 3.300000e-08 71.3
80 TraesCS4A01G453400 chr1B 81.928 83 13 2 11 93 1986491 1986571 1.190000e-07 69.4
81 TraesCS4A01G453400 chr1B 93.617 47 2 1 4094 4139 275406447 275406401 1.190000e-07 69.4
82 TraesCS4A01G453400 chr1B 81.609 87 13 2 11 96 500919215 500919131 1.190000e-07 69.4
83 TraesCS4A01G453400 chr1B 80.899 89 14 3 2907 2994 493823753 493823839 4.260000e-07 67.6
84 TraesCS4A01G453400 chr2B 97.600 250 6 0 3591 3840 478891792 478891543 4.720000e-116 429.0
85 TraesCS4A01G453400 chr2B 85.417 96 12 1 4 97 211698812 211698907 1.510000e-16 99.0
86 TraesCS4A01G453400 chr2B 86.364 88 8 3 3403 3490 442788131 442788214 7.030000e-15 93.5
87 TraesCS4A01G453400 chr2B 83.721 86 12 2 10 94 44290921 44291005 5.480000e-11 80.5
88 TraesCS4A01G453400 chr5A 95.455 264 11 1 3591 3853 436890853 436890590 2.840000e-113 420.0
89 TraesCS4A01G453400 chr4B 95.057 263 13 0 3588 3850 514045081 514045343 1.320000e-111 414.0
90 TraesCS4A01G453400 chr4B 85.890 163 17 6 3893 4049 127473090 127472928 1.140000e-37 169.0
91 TraesCS4A01G453400 chr4B 86.905 84 9 2 3403 3486 629947473 629947554 7.030000e-15 93.5
92 TraesCS4A01G453400 chr4B 96.970 33 1 0 4140 4172 172763021 172763053 1.000000e-03 56.5
93 TraesCS4A01G453400 chr1A 86.875 160 17 4 3893 4049 242003542 242003384 6.790000e-40 176.0
94 TraesCS4A01G453400 chr1A 90.566 53 5 0 41 93 146942552 146942500 3.300000e-08 71.3
95 TraesCS4A01G453400 chr1A 90.385 52 5 0 42 93 540888758 540888707 1.190000e-07 69.4
96 TraesCS4A01G453400 chr4D 83.133 166 18 7 3893 4049 91054414 91054250 6.890000e-30 143.0
97 TraesCS4A01G453400 chr4D 90.625 64 6 0 2898 2961 231936721 231936658 1.180000e-12 86.1
98 TraesCS4A01G453400 chr4D 91.803 61 1 2 4104 4160 409462783 409462723 1.520000e-11 82.4
99 TraesCS4A01G453400 chr4D 84.507 71 10 1 2919 2989 420146779 420146848 1.190000e-07 69.4
100 TraesCS4A01G453400 chr3A 86.179 123 16 1 3954 4075 182623926 182624048 1.490000e-26 132.0
101 TraesCS4A01G453400 chr3A 97.619 42 1 0 4097 4138 486785402 486785361 9.160000e-09 73.1
102 TraesCS4A01G453400 chr3A 100.000 38 0 0 4103 4140 25934714 25934677 3.300000e-08 71.3
103 TraesCS4A01G453400 chr1D 85.039 127 17 2 3945 4070 105967536 105967661 1.930000e-25 128.0
104 TraesCS4A01G453400 chr1D 89.024 82 7 2 2901 2982 318494839 318494760 4.200000e-17 100.0
105 TraesCS4A01G453400 chr1D 87.654 81 6 3 3409 3489 141521835 141521759 2.530000e-14 91.6
106 TraesCS4A01G453400 chr1D 85.000 80 8 3 15 93 417991148 417991072 1.970000e-10 78.7
107 TraesCS4A01G453400 chr5D 90.323 93 9 0 1 93 485160380 485160288 8.970000e-24 122.0
108 TraesCS4A01G453400 chr3D 93.103 58 4 0 4104 4161 613360021 613360078 1.180000e-12 86.1
109 TraesCS4A01G453400 chr3D 90.741 54 5 0 41 94 328016230 328016283 9.160000e-09 73.1
110 TraesCS4A01G453400 chr3D 89.091 55 6 0 39 93 451224464 451224518 1.190000e-07 69.4
111 TraesCS4A01G453400 chr3D 87.097 62 5 3 4079 4138 191557026 191556966 4.260000e-07 67.6
112 TraesCS4A01G453400 chr5B 77.632 152 18 9 3893 4030 70276505 70276654 1.970000e-10 78.7
113 TraesCS4A01G453400 chrUn 82.143 84 12 2 11 93 55789942 55790023 1.190000e-07 69.4
114 TraesCS4A01G453400 chrUn 82.143 84 12 2 11 93 55790155 55790236 1.190000e-07 69.4
115 TraesCS4A01G453400 chrUn 81.928 83 13 2 11 93 309040364 309040444 1.190000e-07 69.4
116 TraesCS4A01G453400 chrUn 81.928 83 13 2 11 93 413164793 413164873 1.190000e-07 69.4
117 TraesCS4A01G453400 chrUn 85.246 61 9 0 4941 5001 181032986 181033046 5.510000e-06 63.9
118 TraesCS4A01G453400 chrUn 85.246 61 9 0 4941 5001 181048704 181048764 5.510000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G453400 chr4A 717959030 717965616 6586 False 12165.000000 12165 100.000000 1 6587 1 chr4A.!!$F2 6586
1 TraesCS4A01G453400 chr4A 717959494 717965519 6025 False 483.533333 926 87.097000 465 6490 6 chr4A.!!$F3 6025
2 TraesCS4A01G453400 chr7A 15696448 15702669 6221 True 878.350000 2573 89.725000 458 6586 12 chr7A.!!$R2 6128
3 TraesCS4A01G453400 chr7A 15957226 15957993 767 True 772.500000 861 85.101500 484 5291 2 chr7A.!!$R4 4807
4 TraesCS4A01G453400 chr7A 15846537 15847188 651 True 565.000000 610 85.151500 1731 6520 2 chr7A.!!$R3 4789
5 TraesCS4A01G453400 chr7A 16366406 16366958 552 False 334.000000 427 83.546000 465 4712 2 chr7A.!!$F3 4247
6 TraesCS4A01G453400 chr7D 16709936 16716489 6553 True 772.261538 1875 89.982846 328 6587 13 chr7D.!!$R2 6259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.034863 GGTCCCGCAATTACCCTTCA 60.035 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
6490 7591 2.160417 GTCCTGTCGATTCCTGCTTTTG 59.84 50.0 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.463505 CACCTCGTAGCTTGCGTG 58.536 61.111 9.61 7.59 0.00 5.34
18 19 2.094659 CACCTCGTAGCTTGCGTGG 61.095 63.158 21.69 21.69 45.18 4.94
20 21 3.188786 CTCGTAGCTTGCGTGGGC 61.189 66.667 9.61 0.00 40.52 5.36
23 24 3.127533 GTAGCTTGCGTGGGCTGG 61.128 66.667 0.00 0.00 39.31 4.85
42 43 4.394712 CCAGTCGGGTCAGTGCCC 62.395 72.222 11.45 11.45 45.21 5.36
43 44 3.314331 CAGTCGGGTCAGTGCCCT 61.314 66.667 17.26 0.47 46.47 5.19
44 45 3.314331 AGTCGGGTCAGTGCCCTG 61.314 66.667 17.26 6.87 46.47 4.45
45 46 3.626924 GTCGGGTCAGTGCCCTGT 61.627 66.667 17.26 0.00 46.47 4.00
46 47 3.625897 TCGGGTCAGTGCCCTGTG 61.626 66.667 17.26 5.68 46.47 3.66
56 57 3.741476 GCCCTGTGCAAAGCCTCG 61.741 66.667 0.00 0.00 40.77 4.63
57 58 3.058160 CCCTGTGCAAAGCCTCGG 61.058 66.667 0.00 0.00 0.00 4.63
59 60 2.979676 CTGTGCAAAGCCTCGGCA 60.980 61.111 11.02 0.00 44.88 5.69
61 62 1.870055 CTGTGCAAAGCCTCGGCATT 61.870 55.000 11.02 1.09 44.88 3.56
63 64 1.303561 TGCAAAGCCTCGGCATTCT 60.304 52.632 11.02 0.00 44.88 2.40
64 65 1.138247 GCAAAGCCTCGGCATTCTG 59.862 57.895 11.02 2.87 44.88 3.02
65 66 1.138247 CAAAGCCTCGGCATTCTGC 59.862 57.895 11.02 0.00 44.88 4.26
86 87 3.995526 CAGAATGCGGCAGATAGGA 57.004 52.632 9.25 0.00 0.00 2.94
87 88 1.793258 CAGAATGCGGCAGATAGGAG 58.207 55.000 9.25 0.00 0.00 3.69
88 89 0.683973 AGAATGCGGCAGATAGGAGG 59.316 55.000 9.25 0.00 0.00 4.30
89 90 0.394565 GAATGCGGCAGATAGGAGGT 59.605 55.000 9.25 0.00 0.00 3.85
90 91 0.394565 AATGCGGCAGATAGGAGGTC 59.605 55.000 9.25 0.00 0.00 3.85
91 92 1.476007 ATGCGGCAGATAGGAGGTCC 61.476 60.000 9.25 0.00 0.00 4.46
92 93 2.873525 GCGGCAGATAGGAGGTCCC 61.874 68.421 0.00 0.00 36.42 4.46
93 94 2.565645 CGGCAGATAGGAGGTCCCG 61.566 68.421 0.00 0.00 40.87 5.14
94 95 2.737830 GCAGATAGGAGGTCCCGC 59.262 66.667 0.00 0.00 40.87 6.13
95 96 2.134287 GCAGATAGGAGGTCCCGCA 61.134 63.158 0.00 0.00 40.87 5.69
96 97 1.686325 GCAGATAGGAGGTCCCGCAA 61.686 60.000 0.00 0.00 40.87 4.85
97 98 1.051812 CAGATAGGAGGTCCCGCAAT 58.948 55.000 0.00 0.00 40.87 3.56
98 99 1.417890 CAGATAGGAGGTCCCGCAATT 59.582 52.381 0.00 0.00 40.87 2.32
99 100 2.632996 CAGATAGGAGGTCCCGCAATTA 59.367 50.000 0.00 0.00 40.87 1.40
100 101 2.633481 AGATAGGAGGTCCCGCAATTAC 59.367 50.000 0.00 0.00 40.87 1.89
101 102 1.125633 TAGGAGGTCCCGCAATTACC 58.874 55.000 0.00 0.00 40.87 2.85
102 103 1.153025 GGAGGTCCCGCAATTACCC 60.153 63.158 0.00 0.00 33.53 3.69
103 104 1.632965 GGAGGTCCCGCAATTACCCT 61.633 60.000 0.00 0.00 33.53 4.34
104 105 0.255033 GAGGTCCCGCAATTACCCTT 59.745 55.000 0.00 0.00 33.53 3.95
105 106 0.255033 AGGTCCCGCAATTACCCTTC 59.745 55.000 0.00 0.00 33.53 3.46
106 107 0.034863 GGTCCCGCAATTACCCTTCA 60.035 55.000 0.00 0.00 0.00 3.02
107 108 1.092348 GTCCCGCAATTACCCTTCAC 58.908 55.000 0.00 0.00 0.00 3.18
108 109 0.034863 TCCCGCAATTACCCTTCACC 60.035 55.000 0.00 0.00 0.00 4.02
109 110 0.322997 CCCGCAATTACCCTTCACCA 60.323 55.000 0.00 0.00 0.00 4.17
110 111 1.684869 CCCGCAATTACCCTTCACCAT 60.685 52.381 0.00 0.00 0.00 3.55
111 112 1.405105 CCGCAATTACCCTTCACCATG 59.595 52.381 0.00 0.00 0.00 3.66
112 113 2.091541 CGCAATTACCCTTCACCATGT 58.908 47.619 0.00 0.00 0.00 3.21
113 114 2.097466 CGCAATTACCCTTCACCATGTC 59.903 50.000 0.00 0.00 0.00 3.06
114 115 3.356290 GCAATTACCCTTCACCATGTCT 58.644 45.455 0.00 0.00 0.00 3.41
115 116 3.378427 GCAATTACCCTTCACCATGTCTC 59.622 47.826 0.00 0.00 0.00 3.36
116 117 4.588899 CAATTACCCTTCACCATGTCTCA 58.411 43.478 0.00 0.00 0.00 3.27
117 118 4.927267 ATTACCCTTCACCATGTCTCAA 57.073 40.909 0.00 0.00 0.00 3.02
118 119 4.715534 TTACCCTTCACCATGTCTCAAA 57.284 40.909 0.00 0.00 0.00 2.69
119 120 3.593442 ACCCTTCACCATGTCTCAAAA 57.407 42.857 0.00 0.00 0.00 2.44
120 121 3.222603 ACCCTTCACCATGTCTCAAAAC 58.777 45.455 0.00 0.00 0.00 2.43
121 122 3.117512 ACCCTTCACCATGTCTCAAAACT 60.118 43.478 0.00 0.00 0.00 2.66
122 123 3.503748 CCCTTCACCATGTCTCAAAACTC 59.496 47.826 0.00 0.00 0.00 3.01
123 124 4.392940 CCTTCACCATGTCTCAAAACTCT 58.607 43.478 0.00 0.00 0.00 3.24
124 125 4.453819 CCTTCACCATGTCTCAAAACTCTC 59.546 45.833 0.00 0.00 0.00 3.20
125 126 4.963318 TCACCATGTCTCAAAACTCTCT 57.037 40.909 0.00 0.00 0.00 3.10
126 127 6.419484 TTCACCATGTCTCAAAACTCTCTA 57.581 37.500 0.00 0.00 0.00 2.43
127 128 6.419484 TCACCATGTCTCAAAACTCTCTAA 57.581 37.500 0.00 0.00 0.00 2.10
128 129 6.826668 TCACCATGTCTCAAAACTCTCTAAA 58.173 36.000 0.00 0.00 0.00 1.85
129 130 7.279615 TCACCATGTCTCAAAACTCTCTAAAA 58.720 34.615 0.00 0.00 0.00 1.52
130 131 7.773224 TCACCATGTCTCAAAACTCTCTAAAAA 59.227 33.333 0.00 0.00 0.00 1.94
131 132 8.571336 CACCATGTCTCAAAACTCTCTAAAAAT 58.429 33.333 0.00 0.00 0.00 1.82
132 133 8.571336 ACCATGTCTCAAAACTCTCTAAAAATG 58.429 33.333 0.00 0.00 0.00 2.32
133 134 8.571336 CCATGTCTCAAAACTCTCTAAAAATGT 58.429 33.333 0.00 0.00 0.00 2.71
136 137 9.832445 TGTCTCAAAACTCTCTAAAAATGTAGT 57.168 29.630 0.00 0.00 0.00 2.73
189 190 9.745018 AAGAGTAAATACCCTTAACTAAAACCC 57.255 33.333 0.00 0.00 0.00 4.11
190 191 8.331740 AGAGTAAATACCCTTAACTAAAACCCC 58.668 37.037 0.00 0.00 0.00 4.95
191 192 7.999042 AGTAAATACCCTTAACTAAAACCCCA 58.001 34.615 0.00 0.00 0.00 4.96
192 193 7.890127 AGTAAATACCCTTAACTAAAACCCCAC 59.110 37.037 0.00 0.00 0.00 4.61
193 194 5.864198 ATACCCTTAACTAAAACCCCACA 57.136 39.130 0.00 0.00 0.00 4.17
194 195 4.752621 ACCCTTAACTAAAACCCCACAT 57.247 40.909 0.00 0.00 0.00 3.21
195 196 4.412843 ACCCTTAACTAAAACCCCACATG 58.587 43.478 0.00 0.00 0.00 3.21
196 197 4.140876 ACCCTTAACTAAAACCCCACATGT 60.141 41.667 0.00 0.00 0.00 3.21
197 198 4.219725 CCCTTAACTAAAACCCCACATGTG 59.780 45.833 19.31 19.31 0.00 3.21
198 199 5.074115 CCTTAACTAAAACCCCACATGTGA 58.926 41.667 27.46 4.14 0.00 3.58
199 200 5.536916 CCTTAACTAAAACCCCACATGTGAA 59.463 40.000 27.46 7.63 0.00 3.18
200 201 6.041069 CCTTAACTAAAACCCCACATGTGAAA 59.959 38.462 27.46 3.38 0.00 2.69
201 202 5.529581 AACTAAAACCCCACATGTGAAAG 57.470 39.130 27.46 16.37 0.00 2.62
202 203 4.542697 ACTAAAACCCCACATGTGAAAGT 58.457 39.130 27.46 17.01 0.00 2.66
203 204 3.817709 AAAACCCCACATGTGAAAGTG 57.182 42.857 27.46 9.65 35.56 3.16
204 205 2.746279 AACCCCACATGTGAAAGTGA 57.254 45.000 27.46 0.00 37.97 3.41
205 206 2.978156 ACCCCACATGTGAAAGTGAT 57.022 45.000 27.46 2.40 37.97 3.06
206 207 3.243359 ACCCCACATGTGAAAGTGATT 57.757 42.857 27.46 0.00 37.97 2.57
207 208 3.575805 ACCCCACATGTGAAAGTGATTT 58.424 40.909 27.46 0.00 37.97 2.17
208 209 3.966665 ACCCCACATGTGAAAGTGATTTT 59.033 39.130 27.46 0.00 37.97 1.82
209 210 4.202243 ACCCCACATGTGAAAGTGATTTTG 60.202 41.667 27.46 5.43 37.97 2.44
210 211 4.039004 CCCCACATGTGAAAGTGATTTTGA 59.961 41.667 27.46 0.00 37.97 2.69
211 212 5.279607 CCCCACATGTGAAAGTGATTTTGAT 60.280 40.000 27.46 0.00 37.97 2.57
212 213 5.636121 CCCACATGTGAAAGTGATTTTGATG 59.364 40.000 27.46 4.14 37.97 3.07
213 214 6.448852 CCACATGTGAAAGTGATTTTGATGA 58.551 36.000 27.46 0.00 37.97 2.92
214 215 6.364165 CCACATGTGAAAGTGATTTTGATGAC 59.636 38.462 27.46 0.00 37.97 3.06
215 216 7.143340 CACATGTGAAAGTGATTTTGATGACT 58.857 34.615 21.64 0.00 37.97 3.41
216 217 7.325338 CACATGTGAAAGTGATTTTGATGACTC 59.675 37.037 21.64 0.00 37.97 3.36
217 218 6.940831 TGTGAAAGTGATTTTGATGACTCA 57.059 33.333 0.00 0.00 0.00 3.41
218 219 7.514784 TGTGAAAGTGATTTTGATGACTCAT 57.485 32.000 0.00 0.00 0.00 2.90
219 220 7.364970 TGTGAAAGTGATTTTGATGACTCATG 58.635 34.615 0.00 0.00 0.00 3.07
220 221 6.805271 GTGAAAGTGATTTTGATGACTCATGG 59.195 38.462 0.00 0.00 0.00 3.66
221 222 6.716173 TGAAAGTGATTTTGATGACTCATGGA 59.284 34.615 0.00 0.00 0.00 3.41
222 223 7.231115 TGAAAGTGATTTTGATGACTCATGGAA 59.769 33.333 0.00 0.00 0.00 3.53
223 224 7.713734 AAGTGATTTTGATGACTCATGGAAT 57.286 32.000 0.00 0.00 0.00 3.01
224 225 7.713734 AGTGATTTTGATGACTCATGGAATT 57.286 32.000 0.00 0.00 0.00 2.17
225 226 8.130671 AGTGATTTTGATGACTCATGGAATTT 57.869 30.769 0.00 0.00 0.00 1.82
226 227 8.591072 AGTGATTTTGATGACTCATGGAATTTT 58.409 29.630 0.00 0.00 0.00 1.82
227 228 9.211485 GTGATTTTGATGACTCATGGAATTTTT 57.789 29.630 0.00 0.00 0.00 1.94
250 251 8.939201 TTTTGCAAAGTCAGTGAAAATAATCA 57.061 26.923 12.41 0.00 0.00 2.57
251 252 8.939201 TTTGCAAAGTCAGTGAAAATAATCAA 57.061 26.923 8.05 0.00 0.00 2.57
252 253 8.939201 TTGCAAAGTCAGTGAAAATAATCAAA 57.061 26.923 0.00 0.00 0.00 2.69
253 254 9.545105 TTGCAAAGTCAGTGAAAATAATCAAAT 57.455 25.926 0.00 0.00 0.00 2.32
254 255 9.545105 TGCAAAGTCAGTGAAAATAATCAAATT 57.455 25.926 0.00 0.00 0.00 1.82
262 263 8.798153 CAGTGAAAATAATCAAATTAACTCGGC 58.202 33.333 0.00 0.00 0.00 5.54
263 264 8.739972 AGTGAAAATAATCAAATTAACTCGGCT 58.260 29.630 0.00 0.00 0.00 5.52
264 265 9.353999 GTGAAAATAATCAAATTAACTCGGCTT 57.646 29.630 0.00 0.00 0.00 4.35
271 272 6.249035 TCAAATTAACTCGGCTTACAAAGG 57.751 37.500 0.00 0.00 0.00 3.11
272 273 5.998981 TCAAATTAACTCGGCTTACAAAGGA 59.001 36.000 0.00 0.00 0.00 3.36
273 274 5.874895 AATTAACTCGGCTTACAAAGGAC 57.125 39.130 0.00 0.00 0.00 3.85
274 275 2.922740 AACTCGGCTTACAAAGGACA 57.077 45.000 0.00 0.00 0.00 4.02
275 276 2.922740 ACTCGGCTTACAAAGGACAA 57.077 45.000 0.00 0.00 0.00 3.18
276 277 2.490991 ACTCGGCTTACAAAGGACAAC 58.509 47.619 0.00 0.00 0.00 3.32
277 278 2.158871 ACTCGGCTTACAAAGGACAACA 60.159 45.455 0.00 0.00 0.00 3.33
278 279 2.875933 CTCGGCTTACAAAGGACAACAA 59.124 45.455 0.00 0.00 0.00 2.83
279 280 2.614983 TCGGCTTACAAAGGACAACAAC 59.385 45.455 0.00 0.00 0.00 3.32
280 281 2.616842 CGGCTTACAAAGGACAACAACT 59.383 45.455 0.00 0.00 0.00 3.16
281 282 3.066203 CGGCTTACAAAGGACAACAACTT 59.934 43.478 0.00 0.00 0.00 2.66
282 283 4.607955 GGCTTACAAAGGACAACAACTTC 58.392 43.478 0.00 0.00 0.00 3.01
283 284 4.097286 GGCTTACAAAGGACAACAACTTCA 59.903 41.667 0.00 0.00 0.00 3.02
284 285 5.273944 GCTTACAAAGGACAACAACTTCAG 58.726 41.667 0.00 0.00 0.00 3.02
285 286 5.163652 GCTTACAAAGGACAACAACTTCAGT 60.164 40.000 0.00 0.00 0.00 3.41
286 287 6.037830 GCTTACAAAGGACAACAACTTCAGTA 59.962 38.462 0.00 0.00 0.00 2.74
287 288 7.255139 GCTTACAAAGGACAACAACTTCAGTAT 60.255 37.037 0.00 0.00 0.00 2.12
288 289 6.377327 ACAAAGGACAACAACTTCAGTATG 57.623 37.500 0.00 0.00 37.54 2.39
305 306 5.528690 TCAGTATGACAAGCCAAATCATAGC 59.471 40.000 0.00 0.00 42.56 2.97
306 307 5.530171 CAGTATGACAAGCCAAATCATAGCT 59.470 40.000 0.00 0.00 39.69 3.32
307 308 5.762218 AGTATGACAAGCCAAATCATAGCTC 59.238 40.000 0.00 0.00 36.30 4.09
308 309 3.282021 TGACAAGCCAAATCATAGCTCC 58.718 45.455 0.00 0.00 35.30 4.70
309 310 2.620585 GACAAGCCAAATCATAGCTCCC 59.379 50.000 0.00 0.00 35.30 4.30
310 311 2.025037 ACAAGCCAAATCATAGCTCCCA 60.025 45.455 0.00 0.00 35.30 4.37
311 312 3.228453 CAAGCCAAATCATAGCTCCCAT 58.772 45.455 0.00 0.00 35.30 4.00
312 313 3.607490 AGCCAAATCATAGCTCCCATT 57.393 42.857 0.00 0.00 28.40 3.16
313 314 3.228453 AGCCAAATCATAGCTCCCATTG 58.772 45.455 0.00 0.00 28.40 2.82
314 315 2.288640 GCCAAATCATAGCTCCCATTGC 60.289 50.000 0.00 0.00 0.00 3.56
315 316 2.960384 CCAAATCATAGCTCCCATTGCA 59.040 45.455 0.00 0.00 0.00 4.08
316 317 3.385433 CCAAATCATAGCTCCCATTGCAA 59.615 43.478 0.00 0.00 0.00 4.08
317 318 4.039973 CCAAATCATAGCTCCCATTGCAAT 59.960 41.667 5.99 5.99 0.00 3.56
318 319 5.227908 CAAATCATAGCTCCCATTGCAATC 58.772 41.667 9.53 0.00 0.00 2.67
319 320 2.867624 TCATAGCTCCCATTGCAATCC 58.132 47.619 9.53 0.00 0.00 3.01
320 321 2.444388 TCATAGCTCCCATTGCAATCCT 59.556 45.455 9.53 3.92 0.00 3.24
321 322 3.117398 TCATAGCTCCCATTGCAATCCTT 60.117 43.478 9.53 0.00 0.00 3.36
322 323 2.242882 AGCTCCCATTGCAATCCTTT 57.757 45.000 9.53 0.00 0.00 3.11
323 324 2.543635 AGCTCCCATTGCAATCCTTTT 58.456 42.857 9.53 0.00 0.00 2.27
324 325 2.908351 AGCTCCCATTGCAATCCTTTTT 59.092 40.909 9.53 0.00 0.00 1.94
351 352 4.853924 AGAAAACAATCAAACTCGGCAT 57.146 36.364 0.00 0.00 0.00 4.40
352 353 5.957842 AGAAAACAATCAAACTCGGCATA 57.042 34.783 0.00 0.00 0.00 3.14
353 354 5.699839 AGAAAACAATCAAACTCGGCATAC 58.300 37.500 0.00 0.00 0.00 2.39
354 355 5.240623 AGAAAACAATCAAACTCGGCATACA 59.759 36.000 0.00 0.00 0.00 2.29
355 356 5.446143 AAACAATCAAACTCGGCATACAA 57.554 34.783 0.00 0.00 0.00 2.41
356 357 5.446143 AACAATCAAACTCGGCATACAAA 57.554 34.783 0.00 0.00 0.00 2.83
357 358 5.446143 ACAATCAAACTCGGCATACAAAA 57.554 34.783 0.00 0.00 0.00 2.44
358 359 5.460646 ACAATCAAACTCGGCATACAAAAG 58.539 37.500 0.00 0.00 0.00 2.27
359 360 5.240623 ACAATCAAACTCGGCATACAAAAGA 59.759 36.000 0.00 0.00 0.00 2.52
360 361 4.742438 TCAAACTCGGCATACAAAAGAC 57.258 40.909 0.00 0.00 0.00 3.01
361 362 4.130857 TCAAACTCGGCATACAAAAGACA 58.869 39.130 0.00 0.00 0.00 3.41
362 363 4.576873 TCAAACTCGGCATACAAAAGACAA 59.423 37.500 0.00 0.00 0.00 3.18
363 364 4.483476 AACTCGGCATACAAAAGACAAC 57.517 40.909 0.00 0.00 0.00 3.32
364 365 3.472652 ACTCGGCATACAAAAGACAACA 58.527 40.909 0.00 0.00 0.00 3.33
365 366 3.880490 ACTCGGCATACAAAAGACAACAA 59.120 39.130 0.00 0.00 0.00 2.83
366 367 4.217754 TCGGCATACAAAAGACAACAAC 57.782 40.909 0.00 0.00 0.00 3.32
367 368 3.880490 TCGGCATACAAAAGACAACAACT 59.120 39.130 0.00 0.00 0.00 3.16
368 369 5.057819 TCGGCATACAAAAGACAACAACTA 58.942 37.500 0.00 0.00 0.00 2.24
369 370 5.049954 TCGGCATACAAAAGACAACAACTAC 60.050 40.000 0.00 0.00 0.00 2.73
370 371 5.277586 CGGCATACAAAAGACAACAACTACA 60.278 40.000 0.00 0.00 0.00 2.74
371 372 6.142817 GGCATACAAAAGACAACAACTACAG 58.857 40.000 0.00 0.00 0.00 2.74
372 373 6.238648 GGCATACAAAAGACAACAACTACAGT 60.239 38.462 0.00 0.00 0.00 3.55
373 374 7.193595 GCATACAAAAGACAACAACTACAGTT 58.806 34.615 0.00 0.00 39.12 3.16
374 375 7.700656 GCATACAAAAGACAACAACTACAGTTT 59.299 33.333 0.00 0.00 35.83 2.66
375 376 9.221775 CATACAAAAGACAACAACTACAGTTTC 57.778 33.333 0.00 0.00 35.83 2.78
376 377 7.209471 ACAAAAGACAACAACTACAGTTTCA 57.791 32.000 0.00 0.00 35.83 2.69
377 378 7.081976 ACAAAAGACAACAACTACAGTTTCAC 58.918 34.615 0.00 0.00 35.83 3.18
378 379 6.811253 AAAGACAACAACTACAGTTTCACA 57.189 33.333 0.00 0.00 35.83 3.58
379 380 6.811253 AAGACAACAACTACAGTTTCACAA 57.189 33.333 0.00 0.00 35.83 3.33
380 381 6.422776 AGACAACAACTACAGTTTCACAAG 57.577 37.500 0.00 0.00 35.83 3.16
381 382 4.981794 ACAACAACTACAGTTTCACAAGC 58.018 39.130 0.00 0.00 35.83 4.01
382 383 4.142469 ACAACAACTACAGTTTCACAAGCC 60.142 41.667 0.00 0.00 35.83 4.35
383 384 3.616219 ACAACTACAGTTTCACAAGCCA 58.384 40.909 0.00 0.00 35.83 4.75
384 385 4.013728 ACAACTACAGTTTCACAAGCCAA 58.986 39.130 0.00 0.00 35.83 4.52
385 386 4.461081 ACAACTACAGTTTCACAAGCCAAA 59.539 37.500 0.00 0.00 35.83 3.28
386 387 4.900635 ACTACAGTTTCACAAGCCAAAG 57.099 40.909 0.00 0.00 0.00 2.77
387 388 2.584492 ACAGTTTCACAAGCCAAAGC 57.416 45.000 0.00 0.00 40.32 3.51
388 389 1.824230 ACAGTTTCACAAGCCAAAGCA 59.176 42.857 0.00 0.00 43.56 3.91
389 390 2.431782 ACAGTTTCACAAGCCAAAGCAT 59.568 40.909 0.00 0.00 43.56 3.79
390 391 3.636300 ACAGTTTCACAAGCCAAAGCATA 59.364 39.130 0.00 0.00 43.56 3.14
391 392 4.232221 CAGTTTCACAAGCCAAAGCATAG 58.768 43.478 0.00 0.00 43.56 2.23
392 393 2.989166 GTTTCACAAGCCAAAGCATAGC 59.011 45.455 0.00 0.00 43.56 2.97
393 394 2.205022 TCACAAGCCAAAGCATAGCT 57.795 45.000 0.00 0.00 43.56 3.32
394 395 2.086869 TCACAAGCCAAAGCATAGCTC 58.913 47.619 0.00 0.00 43.56 4.09
395 396 1.133790 CACAAGCCAAAGCATAGCTCC 59.866 52.381 0.00 0.00 43.56 4.70
396 397 0.743097 CAAGCCAAAGCATAGCTCCC 59.257 55.000 0.00 0.00 43.56 4.30
397 398 0.332632 AAGCCAAAGCATAGCTCCCA 59.667 50.000 0.00 0.00 43.56 4.37
398 399 0.554792 AGCCAAAGCATAGCTCCCAT 59.445 50.000 0.00 0.00 43.56 4.00
399 400 1.776667 AGCCAAAGCATAGCTCCCATA 59.223 47.619 0.00 0.00 43.56 2.74
400 401 2.157738 GCCAAAGCATAGCTCCCATAG 58.842 52.381 0.00 0.00 38.25 2.23
401 402 3.712168 GCCAAAGCATAGCTCCCATAGC 61.712 54.545 0.00 0.00 45.30 2.97
418 419 9.171877 CTCCCATAGCAATCCTCTTTTTATATC 57.828 37.037 0.00 0.00 0.00 1.63
419 420 8.109634 TCCCATAGCAATCCTCTTTTTATATCC 58.890 37.037 0.00 0.00 0.00 2.59
420 421 8.112183 CCCATAGCAATCCTCTTTTTATATCCT 58.888 37.037 0.00 0.00 0.00 3.24
421 422 9.171877 CCATAGCAATCCTCTTTTTATATCCTC 57.828 37.037 0.00 0.00 0.00 3.71
422 423 9.730705 CATAGCAATCCTCTTTTTATATCCTCA 57.269 33.333 0.00 0.00 0.00 3.86
423 424 9.732130 ATAGCAATCCTCTTTTTATATCCTCAC 57.268 33.333 0.00 0.00 0.00 3.51
424 425 7.577303 AGCAATCCTCTTTTTATATCCTCACA 58.423 34.615 0.00 0.00 0.00 3.58
425 426 8.055181 AGCAATCCTCTTTTTATATCCTCACAA 58.945 33.333 0.00 0.00 0.00 3.33
426 427 8.686334 GCAATCCTCTTTTTATATCCTCACAAA 58.314 33.333 0.00 0.00 0.00 2.83
462 463 6.910536 ATATAGAAAACGTTGAAGCTCAGG 57.089 37.500 0.00 0.00 0.00 3.86
463 464 2.222027 AGAAAACGTTGAAGCTCAGGG 58.778 47.619 0.00 0.00 0.00 4.45
6490 7591 8.422566 AGAACCTAGTGGCTAACTGAATAATAC 58.577 37.037 3.24 0.00 40.26 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.261671 CCACGCAAGCTACGAGGT 59.738 61.111 15.24 0.00 45.62 3.85
2 3 2.509336 CCCACGCAAGCTACGAGG 60.509 66.667 15.24 15.46 45.62 4.63
5 6 3.490759 CAGCCCACGCAAGCTACG 61.491 66.667 7.47 7.47 45.62 3.51
25 26 4.394712 GGGCACTGACCCGACTGG 62.395 72.222 0.00 0.00 40.98 4.00
39 40 3.741476 CGAGGCTTTGCACAGGGC 61.741 66.667 1.35 0.14 45.13 5.19
41 42 3.741476 GCCGAGGCTTTGCACAGG 61.741 66.667 6.90 0.00 38.26 4.00
42 43 1.870055 AATGCCGAGGCTTTGCACAG 61.870 55.000 15.75 0.00 42.51 3.66
43 44 1.865788 GAATGCCGAGGCTTTGCACA 61.866 55.000 18.16 0.00 42.51 4.57
44 45 1.153958 GAATGCCGAGGCTTTGCAC 60.154 57.895 18.16 2.77 42.51 4.57
45 46 1.303561 AGAATGCCGAGGCTTTGCA 60.304 52.632 18.16 13.23 42.51 4.08
46 47 1.138247 CAGAATGCCGAGGCTTTGC 59.862 57.895 18.16 10.60 42.51 3.68
67 68 0.250038 TCCTATCTGCCGCATTCTGC 60.250 55.000 0.00 0.00 40.69 4.26
71 72 0.394565 GACCTCCTATCTGCCGCATT 59.605 55.000 0.00 0.00 0.00 3.56
72 73 1.476007 GGACCTCCTATCTGCCGCAT 61.476 60.000 0.00 0.00 0.00 4.73
73 74 2.134287 GGACCTCCTATCTGCCGCA 61.134 63.158 0.00 0.00 0.00 5.69
74 75 2.737830 GGACCTCCTATCTGCCGC 59.262 66.667 0.00 0.00 0.00 6.53
75 76 2.565645 CGGGACCTCCTATCTGCCG 61.566 68.421 0.00 0.00 35.95 5.69
77 78 1.686325 TTGCGGGACCTCCTATCTGC 61.686 60.000 0.00 0.00 35.95 4.26
78 79 1.051812 ATTGCGGGACCTCCTATCTG 58.948 55.000 0.00 0.00 35.95 2.90
79 80 1.807814 AATTGCGGGACCTCCTATCT 58.192 50.000 0.00 0.00 35.95 1.98
80 81 2.289506 GGTAATTGCGGGACCTCCTATC 60.290 54.545 0.00 0.00 35.95 2.08
81 82 1.697982 GGTAATTGCGGGACCTCCTAT 59.302 52.381 0.00 0.00 35.95 2.57
82 83 1.125633 GGTAATTGCGGGACCTCCTA 58.874 55.000 0.00 0.00 35.95 2.94
83 84 1.632965 GGGTAATTGCGGGACCTCCT 61.633 60.000 0.00 0.00 35.95 3.69
84 85 1.153025 GGGTAATTGCGGGACCTCC 60.153 63.158 0.00 0.00 33.48 4.30
85 86 0.255033 AAGGGTAATTGCGGGACCTC 59.745 55.000 0.00 0.00 33.48 3.85
86 87 0.255033 GAAGGGTAATTGCGGGACCT 59.745 55.000 0.00 0.00 33.48 3.85
87 88 0.034863 TGAAGGGTAATTGCGGGACC 60.035 55.000 0.00 0.00 0.00 4.46
88 89 1.092348 GTGAAGGGTAATTGCGGGAC 58.908 55.000 0.00 0.00 0.00 4.46
89 90 0.034863 GGTGAAGGGTAATTGCGGGA 60.035 55.000 0.00 0.00 0.00 5.14
90 91 0.322997 TGGTGAAGGGTAATTGCGGG 60.323 55.000 0.00 0.00 0.00 6.13
91 92 1.405105 CATGGTGAAGGGTAATTGCGG 59.595 52.381 0.00 0.00 0.00 5.69
92 93 2.091541 ACATGGTGAAGGGTAATTGCG 58.908 47.619 0.00 0.00 0.00 4.85
93 94 3.356290 AGACATGGTGAAGGGTAATTGC 58.644 45.455 0.00 0.00 0.00 3.56
94 95 4.588899 TGAGACATGGTGAAGGGTAATTG 58.411 43.478 0.00 0.00 0.00 2.32
95 96 4.927267 TGAGACATGGTGAAGGGTAATT 57.073 40.909 0.00 0.00 0.00 1.40
96 97 4.927267 TTGAGACATGGTGAAGGGTAAT 57.073 40.909 0.00 0.00 0.00 1.89
97 98 4.715534 TTTGAGACATGGTGAAGGGTAA 57.284 40.909 0.00 0.00 0.00 2.85
98 99 4.104102 AGTTTTGAGACATGGTGAAGGGTA 59.896 41.667 0.00 0.00 0.00 3.69
99 100 3.117512 AGTTTTGAGACATGGTGAAGGGT 60.118 43.478 0.00 0.00 0.00 4.34
100 101 3.490348 AGTTTTGAGACATGGTGAAGGG 58.510 45.455 0.00 0.00 0.00 3.95
101 102 4.392940 AGAGTTTTGAGACATGGTGAAGG 58.607 43.478 0.00 0.00 0.00 3.46
102 103 5.303971 AGAGAGTTTTGAGACATGGTGAAG 58.696 41.667 0.00 0.00 0.00 3.02
103 104 5.296151 AGAGAGTTTTGAGACATGGTGAA 57.704 39.130 0.00 0.00 0.00 3.18
104 105 4.963318 AGAGAGTTTTGAGACATGGTGA 57.037 40.909 0.00 0.00 0.00 4.02
105 106 7.496529 TTTTAGAGAGTTTTGAGACATGGTG 57.503 36.000 0.00 0.00 0.00 4.17
106 107 8.571336 CATTTTTAGAGAGTTTTGAGACATGGT 58.429 33.333 0.00 0.00 0.00 3.55
107 108 8.571336 ACATTTTTAGAGAGTTTTGAGACATGG 58.429 33.333 0.00 0.00 0.00 3.66
110 111 9.832445 ACTACATTTTTAGAGAGTTTTGAGACA 57.168 29.630 0.00 0.00 0.00 3.41
164 165 8.331740 GGGGTTTTAGTTAAGGGTATTTACTCT 58.668 37.037 0.00 0.00 39.08 3.24
165 166 8.108999 TGGGGTTTTAGTTAAGGGTATTTACTC 58.891 37.037 0.00 0.00 0.00 2.59
166 167 7.890127 GTGGGGTTTTAGTTAAGGGTATTTACT 59.110 37.037 0.00 0.00 0.00 2.24
167 168 7.669304 TGTGGGGTTTTAGTTAAGGGTATTTAC 59.331 37.037 0.00 0.00 0.00 2.01
168 169 7.763613 TGTGGGGTTTTAGTTAAGGGTATTTA 58.236 34.615 0.00 0.00 0.00 1.40
169 170 6.622361 TGTGGGGTTTTAGTTAAGGGTATTT 58.378 36.000 0.00 0.00 0.00 1.40
170 171 6.216854 TGTGGGGTTTTAGTTAAGGGTATT 57.783 37.500 0.00 0.00 0.00 1.89
171 172 5.864198 TGTGGGGTTTTAGTTAAGGGTAT 57.136 39.130 0.00 0.00 0.00 2.73
172 173 5.074790 ACATGTGGGGTTTTAGTTAAGGGTA 59.925 40.000 0.00 0.00 0.00 3.69
173 174 4.140876 ACATGTGGGGTTTTAGTTAAGGGT 60.141 41.667 0.00 0.00 0.00 4.34
174 175 4.219725 CACATGTGGGGTTTTAGTTAAGGG 59.780 45.833 18.51 0.00 0.00 3.95
175 176 5.074115 TCACATGTGGGGTTTTAGTTAAGG 58.926 41.667 25.16 0.00 0.00 2.69
176 177 6.642707 TTCACATGTGGGGTTTTAGTTAAG 57.357 37.500 25.16 0.00 0.00 1.85
177 178 6.608002 ACTTTCACATGTGGGGTTTTAGTTAA 59.392 34.615 25.16 5.13 0.00 2.01
178 179 6.039941 CACTTTCACATGTGGGGTTTTAGTTA 59.960 38.462 25.16 0.00 0.00 2.24
179 180 4.959839 ACTTTCACATGTGGGGTTTTAGTT 59.040 37.500 25.16 0.00 0.00 2.24
180 181 4.340950 CACTTTCACATGTGGGGTTTTAGT 59.659 41.667 25.16 14.00 0.00 2.24
181 182 4.582656 TCACTTTCACATGTGGGGTTTTAG 59.417 41.667 25.16 13.46 35.15 1.85
182 183 4.537751 TCACTTTCACATGTGGGGTTTTA 58.462 39.130 25.16 1.24 35.15 1.52
183 184 3.370104 TCACTTTCACATGTGGGGTTTT 58.630 40.909 25.16 3.15 35.15 2.43
184 185 3.025322 TCACTTTCACATGTGGGGTTT 57.975 42.857 25.16 4.20 35.15 3.27
185 186 2.746279 TCACTTTCACATGTGGGGTT 57.254 45.000 25.16 5.62 35.15 4.11
186 187 2.978156 ATCACTTTCACATGTGGGGT 57.022 45.000 25.16 17.28 35.15 4.95
187 188 4.039004 TCAAAATCACTTTCACATGTGGGG 59.961 41.667 25.16 16.70 35.15 4.96
188 189 5.199024 TCAAAATCACTTTCACATGTGGG 57.801 39.130 25.16 17.02 35.15 4.61
189 190 6.364165 GTCATCAAAATCACTTTCACATGTGG 59.636 38.462 25.16 12.14 35.15 4.17
190 191 7.143340 AGTCATCAAAATCACTTTCACATGTG 58.857 34.615 20.18 20.18 35.68 3.21
191 192 7.013559 TGAGTCATCAAAATCACTTTCACATGT 59.986 33.333 0.00 0.00 30.61 3.21
192 193 7.364970 TGAGTCATCAAAATCACTTTCACATG 58.635 34.615 0.00 0.00 30.61 3.21
193 194 7.514784 TGAGTCATCAAAATCACTTTCACAT 57.485 32.000 0.00 0.00 30.61 3.21
194 195 6.940831 TGAGTCATCAAAATCACTTTCACA 57.059 33.333 0.00 0.00 30.61 3.58
195 196 6.805271 CCATGAGTCATCAAAATCACTTTCAC 59.195 38.462 1.56 0.00 39.39 3.18
196 197 6.716173 TCCATGAGTCATCAAAATCACTTTCA 59.284 34.615 1.56 0.00 39.39 2.69
197 198 7.149569 TCCATGAGTCATCAAAATCACTTTC 57.850 36.000 1.56 0.00 39.39 2.62
198 199 7.528996 TTCCATGAGTCATCAAAATCACTTT 57.471 32.000 1.56 0.00 39.39 2.66
199 200 7.713734 ATTCCATGAGTCATCAAAATCACTT 57.286 32.000 1.56 0.00 39.39 3.16
200 201 7.713734 AATTCCATGAGTCATCAAAATCACT 57.286 32.000 1.56 0.00 39.39 3.41
201 202 8.767478 AAAATTCCATGAGTCATCAAAATCAC 57.233 30.769 1.56 0.00 39.39 3.06
224 225 9.376075 TGATTATTTTCACTGACTTTGCAAAAA 57.624 25.926 13.84 1.47 0.00 1.94
225 226 8.939201 TGATTATTTTCACTGACTTTGCAAAA 57.061 26.923 13.84 0.00 0.00 2.44
226 227 8.939201 TTGATTATTTTCACTGACTTTGCAAA 57.061 26.923 12.14 12.14 0.00 3.68
227 228 8.939201 TTTGATTATTTTCACTGACTTTGCAA 57.061 26.923 0.00 0.00 0.00 4.08
228 229 9.545105 AATTTGATTATTTTCACTGACTTTGCA 57.455 25.926 0.00 0.00 0.00 4.08
236 237 8.798153 GCCGAGTTAATTTGATTATTTTCACTG 58.202 33.333 0.00 0.00 0.00 3.66
237 238 8.739972 AGCCGAGTTAATTTGATTATTTTCACT 58.260 29.630 0.00 0.00 0.00 3.41
238 239 8.911247 AGCCGAGTTAATTTGATTATTTTCAC 57.089 30.769 0.00 0.00 0.00 3.18
245 246 8.455682 CCTTTGTAAGCCGAGTTAATTTGATTA 58.544 33.333 0.00 0.00 0.00 1.75
246 247 7.175990 TCCTTTGTAAGCCGAGTTAATTTGATT 59.824 33.333 0.00 0.00 0.00 2.57
247 248 6.657541 TCCTTTGTAAGCCGAGTTAATTTGAT 59.342 34.615 0.00 0.00 0.00 2.57
248 249 5.998981 TCCTTTGTAAGCCGAGTTAATTTGA 59.001 36.000 0.00 0.00 0.00 2.69
249 250 6.084277 GTCCTTTGTAAGCCGAGTTAATTTG 58.916 40.000 0.00 0.00 0.00 2.32
250 251 5.766174 TGTCCTTTGTAAGCCGAGTTAATTT 59.234 36.000 0.00 0.00 0.00 1.82
251 252 5.310451 TGTCCTTTGTAAGCCGAGTTAATT 58.690 37.500 0.00 0.00 0.00 1.40
252 253 4.901868 TGTCCTTTGTAAGCCGAGTTAAT 58.098 39.130 0.00 0.00 0.00 1.40
253 254 4.339872 TGTCCTTTGTAAGCCGAGTTAA 57.660 40.909 0.00 0.00 0.00 2.01
254 255 4.060205 GTTGTCCTTTGTAAGCCGAGTTA 58.940 43.478 0.00 0.00 0.00 2.24
255 256 2.876550 GTTGTCCTTTGTAAGCCGAGTT 59.123 45.455 0.00 0.00 0.00 3.01
256 257 2.158871 TGTTGTCCTTTGTAAGCCGAGT 60.159 45.455 0.00 0.00 0.00 4.18
257 258 2.489971 TGTTGTCCTTTGTAAGCCGAG 58.510 47.619 0.00 0.00 0.00 4.63
258 259 2.614983 GTTGTTGTCCTTTGTAAGCCGA 59.385 45.455 0.00 0.00 0.00 5.54
259 260 2.616842 AGTTGTTGTCCTTTGTAAGCCG 59.383 45.455 0.00 0.00 0.00 5.52
260 261 4.097286 TGAAGTTGTTGTCCTTTGTAAGCC 59.903 41.667 0.00 0.00 0.00 4.35
261 262 5.163652 ACTGAAGTTGTTGTCCTTTGTAAGC 60.164 40.000 0.00 0.00 0.00 3.09
262 263 6.436843 ACTGAAGTTGTTGTCCTTTGTAAG 57.563 37.500 0.00 0.00 0.00 2.34
263 264 7.771361 TCATACTGAAGTTGTTGTCCTTTGTAA 59.229 33.333 0.00 0.00 0.00 2.41
264 265 7.225931 GTCATACTGAAGTTGTTGTCCTTTGTA 59.774 37.037 0.00 0.00 0.00 2.41
265 266 6.038271 GTCATACTGAAGTTGTTGTCCTTTGT 59.962 38.462 0.00 0.00 0.00 2.83
266 267 6.038161 TGTCATACTGAAGTTGTTGTCCTTTG 59.962 38.462 0.00 0.00 0.00 2.77
267 268 6.119536 TGTCATACTGAAGTTGTTGTCCTTT 58.880 36.000 0.00 0.00 0.00 3.11
268 269 5.680619 TGTCATACTGAAGTTGTTGTCCTT 58.319 37.500 0.00 0.00 0.00 3.36
269 270 5.290493 TGTCATACTGAAGTTGTTGTCCT 57.710 39.130 0.00 0.00 0.00 3.85
270 271 5.560953 GCTTGTCATACTGAAGTTGTTGTCC 60.561 44.000 0.00 0.00 0.00 4.02
271 272 5.444122 GCTTGTCATACTGAAGTTGTTGTC 58.556 41.667 0.00 0.00 0.00 3.18
272 273 4.275936 GGCTTGTCATACTGAAGTTGTTGT 59.724 41.667 0.00 0.00 0.00 3.32
273 274 4.275689 TGGCTTGTCATACTGAAGTTGTTG 59.724 41.667 0.00 0.00 0.00 3.33
274 275 4.460263 TGGCTTGTCATACTGAAGTTGTT 58.540 39.130 0.00 0.00 0.00 2.83
275 276 4.085357 TGGCTTGTCATACTGAAGTTGT 57.915 40.909 0.00 0.00 0.00 3.32
276 277 5.437289 TTTGGCTTGTCATACTGAAGTTG 57.563 39.130 0.00 0.00 0.00 3.16
277 278 5.769662 TGATTTGGCTTGTCATACTGAAGTT 59.230 36.000 0.00 0.00 0.00 2.66
278 279 5.316167 TGATTTGGCTTGTCATACTGAAGT 58.684 37.500 0.00 0.00 0.00 3.01
279 280 5.885230 TGATTTGGCTTGTCATACTGAAG 57.115 39.130 0.00 0.00 0.00 3.02
280 281 6.038603 GCTATGATTTGGCTTGTCATACTGAA 59.961 38.462 0.00 0.00 34.62 3.02
281 282 5.528690 GCTATGATTTGGCTTGTCATACTGA 59.471 40.000 0.00 0.00 34.62 3.41
282 283 5.530171 AGCTATGATTTGGCTTGTCATACTG 59.470 40.000 0.00 0.00 34.62 2.74
283 284 5.688807 AGCTATGATTTGGCTTGTCATACT 58.311 37.500 0.00 0.00 34.62 2.12
284 285 5.049129 GGAGCTATGATTTGGCTTGTCATAC 60.049 44.000 0.00 0.00 36.37 2.39
285 286 5.065914 GGAGCTATGATTTGGCTTGTCATA 58.934 41.667 0.00 6.27 36.37 2.15
286 287 3.887716 GGAGCTATGATTTGGCTTGTCAT 59.112 43.478 0.00 4.90 36.37 3.06
287 288 3.282021 GGAGCTATGATTTGGCTTGTCA 58.718 45.455 0.00 0.00 36.37 3.58
288 289 2.620585 GGGAGCTATGATTTGGCTTGTC 59.379 50.000 0.00 0.00 36.37 3.18
289 290 2.025037 TGGGAGCTATGATTTGGCTTGT 60.025 45.455 0.00 0.00 36.37 3.16
290 291 2.658285 TGGGAGCTATGATTTGGCTTG 58.342 47.619 0.00 0.00 36.37 4.01
291 292 3.607490 ATGGGAGCTATGATTTGGCTT 57.393 42.857 0.00 0.00 36.37 4.35
292 293 3.228453 CAATGGGAGCTATGATTTGGCT 58.772 45.455 0.00 0.00 39.16 4.75
293 294 2.288640 GCAATGGGAGCTATGATTTGGC 60.289 50.000 0.00 0.00 0.00 4.52
294 295 2.960384 TGCAATGGGAGCTATGATTTGG 59.040 45.455 0.00 0.00 0.00 3.28
295 296 4.659111 TTGCAATGGGAGCTATGATTTG 57.341 40.909 0.00 0.00 0.00 2.32
296 297 4.282703 GGATTGCAATGGGAGCTATGATTT 59.717 41.667 18.59 0.00 0.00 2.17
297 298 3.830755 GGATTGCAATGGGAGCTATGATT 59.169 43.478 18.59 0.00 0.00 2.57
298 299 3.075582 AGGATTGCAATGGGAGCTATGAT 59.924 43.478 18.59 0.00 0.00 2.45
299 300 2.444388 AGGATTGCAATGGGAGCTATGA 59.556 45.455 18.59 0.00 0.00 2.15
300 301 2.872732 AGGATTGCAATGGGAGCTATG 58.127 47.619 18.59 0.00 0.00 2.23
301 302 3.607490 AAGGATTGCAATGGGAGCTAT 57.393 42.857 18.59 0.00 0.00 2.97
302 303 3.386932 AAAGGATTGCAATGGGAGCTA 57.613 42.857 18.59 0.00 0.00 3.32
303 304 2.242882 AAAGGATTGCAATGGGAGCT 57.757 45.000 18.59 0.00 0.00 4.09
304 305 3.339253 AAAAAGGATTGCAATGGGAGC 57.661 42.857 18.59 1.11 0.00 4.70
322 323 9.672086 CCGAGTTTGATTGTTTTCTATACAAAA 57.328 29.630 0.00 0.00 38.82 2.44
323 324 7.806014 GCCGAGTTTGATTGTTTTCTATACAAA 59.194 33.333 0.00 0.00 38.82 2.83
324 325 7.041030 TGCCGAGTTTGATTGTTTTCTATACAA 60.041 33.333 0.00 0.00 39.58 2.41
325 326 6.428465 TGCCGAGTTTGATTGTTTTCTATACA 59.572 34.615 0.00 0.00 0.00 2.29
326 327 6.837992 TGCCGAGTTTGATTGTTTTCTATAC 58.162 36.000 0.00 0.00 0.00 1.47
327 328 7.624360 ATGCCGAGTTTGATTGTTTTCTATA 57.376 32.000 0.00 0.00 0.00 1.31
328 329 5.957842 TGCCGAGTTTGATTGTTTTCTAT 57.042 34.783 0.00 0.00 0.00 1.98
329 330 5.957842 ATGCCGAGTTTGATTGTTTTCTA 57.042 34.783 0.00 0.00 0.00 2.10
330 331 4.853924 ATGCCGAGTTTGATTGTTTTCT 57.146 36.364 0.00 0.00 0.00 2.52
331 332 5.457140 TGTATGCCGAGTTTGATTGTTTTC 58.543 37.500 0.00 0.00 0.00 2.29
345 346 3.880490 AGTTGTTGTCTTTTGTATGCCGA 59.120 39.130 0.00 0.00 0.00 5.54
346 347 4.223320 AGTTGTTGTCTTTTGTATGCCG 57.777 40.909 0.00 0.00 0.00 5.69
351 352 8.231837 GTGAAACTGTAGTTGTTGTCTTTTGTA 58.768 33.333 0.00 0.00 38.44 2.41
352 353 7.081976 GTGAAACTGTAGTTGTTGTCTTTTGT 58.918 34.615 0.00 0.00 38.44 2.83
353 354 7.081349 TGTGAAACTGTAGTTGTTGTCTTTTG 58.919 34.615 0.00 0.00 38.44 2.44
354 355 7.209471 TGTGAAACTGTAGTTGTTGTCTTTT 57.791 32.000 0.00 0.00 38.44 2.27
355 356 6.811253 TGTGAAACTGTAGTTGTTGTCTTT 57.189 33.333 0.00 0.00 38.44 2.52
356 357 6.622896 GCTTGTGAAACTGTAGTTGTTGTCTT 60.623 38.462 0.00 0.00 38.44 3.01
357 358 5.163754 GCTTGTGAAACTGTAGTTGTTGTCT 60.164 40.000 0.00 0.00 38.44 3.41
358 359 5.028375 GCTTGTGAAACTGTAGTTGTTGTC 58.972 41.667 0.00 0.00 38.44 3.18
359 360 4.142469 GGCTTGTGAAACTGTAGTTGTTGT 60.142 41.667 0.00 0.00 38.44 3.32
360 361 4.142491 TGGCTTGTGAAACTGTAGTTGTTG 60.142 41.667 0.00 0.00 38.44 3.33
361 362 4.013728 TGGCTTGTGAAACTGTAGTTGTT 58.986 39.130 0.00 0.00 38.44 2.83
362 363 3.616219 TGGCTTGTGAAACTGTAGTTGT 58.384 40.909 0.00 0.00 38.44 3.32
363 364 4.630894 TTGGCTTGTGAAACTGTAGTTG 57.369 40.909 0.00 0.00 38.44 3.16
364 365 4.440112 GCTTTGGCTTGTGAAACTGTAGTT 60.440 41.667 0.00 0.00 36.19 2.24
365 366 3.066760 GCTTTGGCTTGTGAAACTGTAGT 59.933 43.478 0.00 0.00 34.52 2.73
366 367 3.066621 TGCTTTGGCTTGTGAAACTGTAG 59.933 43.478 0.00 0.00 37.22 2.74
367 368 3.020274 TGCTTTGGCTTGTGAAACTGTA 58.980 40.909 0.00 0.00 37.22 2.74
368 369 1.824230 TGCTTTGGCTTGTGAAACTGT 59.176 42.857 0.00 0.00 37.22 3.55
369 370 2.582728 TGCTTTGGCTTGTGAAACTG 57.417 45.000 0.00 0.00 37.22 3.16
370 371 3.305608 GCTATGCTTTGGCTTGTGAAACT 60.306 43.478 0.00 0.00 37.22 2.66
371 372 2.989166 GCTATGCTTTGGCTTGTGAAAC 59.011 45.455 0.00 0.00 39.59 2.78
372 373 2.892852 AGCTATGCTTTGGCTTGTGAAA 59.107 40.909 0.00 0.00 33.89 2.69
373 374 2.489329 GAGCTATGCTTTGGCTTGTGAA 59.511 45.455 0.00 0.00 39.88 3.18
374 375 2.086869 GAGCTATGCTTTGGCTTGTGA 58.913 47.619 0.00 0.00 39.88 3.58
375 376 1.133790 GGAGCTATGCTTTGGCTTGTG 59.866 52.381 0.00 0.00 39.88 3.33
376 377 1.467920 GGAGCTATGCTTTGGCTTGT 58.532 50.000 0.00 0.00 39.88 3.16
377 378 0.743097 GGGAGCTATGCTTTGGCTTG 59.257 55.000 0.00 0.00 39.88 4.01
378 379 0.332632 TGGGAGCTATGCTTTGGCTT 59.667 50.000 0.00 0.00 39.88 4.35
379 380 0.554792 ATGGGAGCTATGCTTTGGCT 59.445 50.000 0.00 0.00 39.88 4.75
380 381 2.157738 CTATGGGAGCTATGCTTTGGC 58.842 52.381 0.00 0.00 39.88 4.52
392 393 9.171877 GATATAAAAAGAGGATTGCTATGGGAG 57.828 37.037 0.00 0.00 0.00 4.30
393 394 8.109634 GGATATAAAAAGAGGATTGCTATGGGA 58.890 37.037 0.00 0.00 0.00 4.37
394 395 8.112183 AGGATATAAAAAGAGGATTGCTATGGG 58.888 37.037 0.00 0.00 0.00 4.00
395 396 9.171877 GAGGATATAAAAAGAGGATTGCTATGG 57.828 37.037 0.00 0.00 0.00 2.74
396 397 9.730705 TGAGGATATAAAAAGAGGATTGCTATG 57.269 33.333 0.00 0.00 0.00 2.23
397 398 9.732130 GTGAGGATATAAAAAGAGGATTGCTAT 57.268 33.333 0.00 0.00 0.00 2.97
398 399 8.713971 TGTGAGGATATAAAAAGAGGATTGCTA 58.286 33.333 0.00 0.00 0.00 3.49
399 400 7.577303 TGTGAGGATATAAAAAGAGGATTGCT 58.423 34.615 0.00 0.00 0.00 3.91
400 401 7.807977 TGTGAGGATATAAAAAGAGGATTGC 57.192 36.000 0.00 0.00 0.00 3.56
436 437 8.879759 CCTGAGCTTCAACGTTTTCTATATAAA 58.120 33.333 0.00 0.00 0.00 1.40
437 438 7.494625 CCCTGAGCTTCAACGTTTTCTATATAA 59.505 37.037 0.00 0.00 0.00 0.98
438 439 6.984474 CCCTGAGCTTCAACGTTTTCTATATA 59.016 38.462 0.00 0.00 0.00 0.86
439 440 5.817816 CCCTGAGCTTCAACGTTTTCTATAT 59.182 40.000 0.00 0.00 0.00 0.86
440 441 5.175859 CCCTGAGCTTCAACGTTTTCTATA 58.824 41.667 0.00 0.00 0.00 1.31
441 442 4.003648 CCCTGAGCTTCAACGTTTTCTAT 58.996 43.478 0.00 0.00 0.00 1.98
442 443 3.181458 ACCCTGAGCTTCAACGTTTTCTA 60.181 43.478 0.00 0.00 0.00 2.10
443 444 2.222027 CCCTGAGCTTCAACGTTTTCT 58.778 47.619 0.00 0.00 0.00 2.52
444 445 1.947456 ACCCTGAGCTTCAACGTTTTC 59.053 47.619 0.00 0.00 0.00 2.29
445 446 2.052782 ACCCTGAGCTTCAACGTTTT 57.947 45.000 0.00 0.00 0.00 2.43
446 447 2.158871 TGTACCCTGAGCTTCAACGTTT 60.159 45.455 0.00 0.00 0.00 3.60
447 448 1.414919 TGTACCCTGAGCTTCAACGTT 59.585 47.619 0.00 0.00 0.00 3.99
448 449 1.045407 TGTACCCTGAGCTTCAACGT 58.955 50.000 0.00 0.00 0.00 3.99
449 450 2.163818 TTGTACCCTGAGCTTCAACG 57.836 50.000 0.00 0.00 0.00 4.10
450 451 4.911514 TTTTTGTACCCTGAGCTTCAAC 57.088 40.909 0.00 0.00 0.00 3.18
6490 7591 2.160417 GTCCTGTCGATTCCTGCTTTTG 59.840 50.000 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.