Multiple sequence alignment - TraesCS4A01G453300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G453300 chr4A 100.000 4005 0 0 1 4005 717924336 717920332 0.000000e+00 7396
1 TraesCS4A01G453300 chr4A 79.639 1886 277 61 1414 3240 717760317 717758480 0.000000e+00 1256
2 TraesCS4A01G453300 chr4A 81.733 1489 215 35 1777 3240 717296754 717298210 0.000000e+00 1190
3 TraesCS4A01G453300 chr7A 90.491 2282 133 23 1777 4003 15747781 15750033 0.000000e+00 2935
4 TraesCS4A01G453300 chr7A 78.689 2135 304 75 1213 3260 15995951 15998021 0.000000e+00 1282
5 TraesCS4A01G453300 chr7A 80.738 1599 218 54 1425 2975 16398351 16396795 0.000000e+00 1164
6 TraesCS4A01G453300 chr7A 83.158 1140 153 12 1845 2975 15787668 15788777 0.000000e+00 1005
7 TraesCS4A01G453300 chr7A 83.158 1140 153 12 1845 2975 15815551 15816660 0.000000e+00 1005
8 TraesCS4A01G453300 chr7A 79.720 715 100 38 7 706 521905693 521906377 3.620000e-130 475
9 TraesCS4A01G453300 chr7A 81.786 571 46 22 704 1236 15746580 15747130 3.700000e-115 425
10 TraesCS4A01G453300 chr7A 87.117 326 25 7 1366 1684 15747228 15747543 1.770000e-93 353
11 TraesCS4A01G453300 chr7A 75.208 722 113 30 1351 2019 15842347 15843055 8.470000e-72 281
12 TraesCS4A01G453300 chr7D 91.041 1585 75 28 1706 3224 16717980 16719563 0.000000e+00 2078
13 TraesCS4A01G453300 chr7D 83.333 1134 151 12 1845 2971 16751666 16752768 0.000000e+00 1013
14 TraesCS4A01G453300 chr7D 79.380 1581 209 72 1213 2746 16770063 16771573 0.000000e+00 1005
15 TraesCS4A01G453300 chr7D 80.452 885 86 41 843 1689 16717005 16717840 2.660000e-166 595
16 TraesCS4A01G453300 chr7D 84.633 449 46 10 3257 3684 16719556 16720002 3.700000e-115 425
17 TraesCS4A01G453300 chr7D 90.635 299 19 6 3708 4001 16719998 16720292 4.850000e-104 388
18 TraesCS4A01G453300 chr7B 83.348 1141 150 15 1843 2975 655819564 655818456 0.000000e+00 1018
19 TraesCS4A01G453300 chr7B 80.133 901 144 14 2076 2975 655654522 655653656 1.210000e-179 640
20 TraesCS4A01G453300 chr7B 80.110 724 114 25 32 742 504772186 504772892 2.760000e-141 512
21 TraesCS4A01G453300 chr7B 85.926 135 19 0 1887 2021 655654663 655654529 1.160000e-30 145
22 TraesCS4A01G453300 chr7B 84.848 132 20 0 1892 2023 655738826 655738695 2.510000e-27 134
23 TraesCS4A01G453300 chrUn 83.158 1140 153 12 1845 2975 318851941 318853050 0.000000e+00 1005
24 TraesCS4A01G453300 chr2D 82.240 732 101 25 22 742 30739996 30739283 4.430000e-169 604
25 TraesCS4A01G453300 chr2B 81.671 742 105 28 1 730 775835092 775835814 4.460000e-164 588
26 TraesCS4A01G453300 chr1A 80.615 748 114 26 3 741 483680972 483681697 2.100000e-152 549
27 TraesCS4A01G453300 chr5D 81.886 668 91 24 86 741 88186438 88187087 1.640000e-148 536
28 TraesCS4A01G453300 chr5D 80.000 640 99 23 7 631 493162132 493161507 2.840000e-121 446
29 TraesCS4A01G453300 chr6B 80.470 681 98 22 60 731 57291532 57290878 4.650000e-134 488
30 TraesCS4A01G453300 chr1D 83.840 526 62 17 227 742 226471491 226470979 2.800000e-131 479
31 TraesCS4A01G453300 chr3B 76.590 346 63 14 38 378 49684048 49684380 1.480000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G453300 chr4A 717920332 717924336 4004 True 7396.000000 7396 100.000000 1 4005 1 chr4A.!!$R2 4004
1 TraesCS4A01G453300 chr4A 717758480 717760317 1837 True 1256.000000 1256 79.639000 1414 3240 1 chr4A.!!$R1 1826
2 TraesCS4A01G453300 chr4A 717296754 717298210 1456 False 1190.000000 1190 81.733000 1777 3240 1 chr4A.!!$F1 1463
3 TraesCS4A01G453300 chr7A 15995951 15998021 2070 False 1282.000000 1282 78.689000 1213 3260 1 chr7A.!!$F4 2047
4 TraesCS4A01G453300 chr7A 15746580 15750033 3453 False 1237.666667 2935 86.464667 704 4003 3 chr7A.!!$F6 3299
5 TraesCS4A01G453300 chr7A 16396795 16398351 1556 True 1164.000000 1164 80.738000 1425 2975 1 chr7A.!!$R1 1550
6 TraesCS4A01G453300 chr7A 15787668 15788777 1109 False 1005.000000 1005 83.158000 1845 2975 1 chr7A.!!$F1 1130
7 TraesCS4A01G453300 chr7A 15815551 15816660 1109 False 1005.000000 1005 83.158000 1845 2975 1 chr7A.!!$F2 1130
8 TraesCS4A01G453300 chr7A 521905693 521906377 684 False 475.000000 475 79.720000 7 706 1 chr7A.!!$F5 699
9 TraesCS4A01G453300 chr7A 15842347 15843055 708 False 281.000000 281 75.208000 1351 2019 1 chr7A.!!$F3 668
10 TraesCS4A01G453300 chr7D 16751666 16752768 1102 False 1013.000000 1013 83.333000 1845 2971 1 chr7D.!!$F1 1126
11 TraesCS4A01G453300 chr7D 16770063 16771573 1510 False 1005.000000 1005 79.380000 1213 2746 1 chr7D.!!$F2 1533
12 TraesCS4A01G453300 chr7D 16717005 16720292 3287 False 871.500000 2078 86.690250 843 4001 4 chr7D.!!$F3 3158
13 TraesCS4A01G453300 chr7B 655818456 655819564 1108 True 1018.000000 1018 83.348000 1843 2975 1 chr7B.!!$R2 1132
14 TraesCS4A01G453300 chr7B 504772186 504772892 706 False 512.000000 512 80.110000 32 742 1 chr7B.!!$F1 710
15 TraesCS4A01G453300 chr7B 655653656 655654663 1007 True 392.500000 640 83.029500 1887 2975 2 chr7B.!!$R3 1088
16 TraesCS4A01G453300 chrUn 318851941 318853050 1109 False 1005.000000 1005 83.158000 1845 2975 1 chrUn.!!$F1 1130
17 TraesCS4A01G453300 chr2D 30739283 30739996 713 True 604.000000 604 82.240000 22 742 1 chr2D.!!$R1 720
18 TraesCS4A01G453300 chr2B 775835092 775835814 722 False 588.000000 588 81.671000 1 730 1 chr2B.!!$F1 729
19 TraesCS4A01G453300 chr1A 483680972 483681697 725 False 549.000000 549 80.615000 3 741 1 chr1A.!!$F1 738
20 TraesCS4A01G453300 chr5D 88186438 88187087 649 False 536.000000 536 81.886000 86 741 1 chr5D.!!$F1 655
21 TraesCS4A01G453300 chr5D 493161507 493162132 625 True 446.000000 446 80.000000 7 631 1 chr5D.!!$R1 624
22 TraesCS4A01G453300 chr6B 57290878 57291532 654 True 488.000000 488 80.470000 60 731 1 chr6B.!!$R1 671
23 TraesCS4A01G453300 chr1D 226470979 226471491 512 True 479.000000 479 83.840000 227 742 1 chr1D.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 693 0.038599 ATCCCAGTGATGCAGCAACA 59.961 50.0 6.05 0.00 30.54 3.33 F
672 694 0.038599 TCCCAGTGATGCAGCAACAT 59.961 50.0 6.05 0.00 0.00 2.71 F
673 695 0.172578 CCCAGTGATGCAGCAACATG 59.827 55.0 6.05 6.14 0.00 3.21 F
1820 2149 0.326522 TTATGCCTCTGCCTCCTCCA 60.327 55.0 0.00 0.00 36.33 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2130 0.326522 TGGAGGAGGCAGAGGCATAA 60.327 55.000 0.00 0.0 43.71 1.90 R
2087 2425 1.098050 GATGAGGCGGCAACTGAATT 58.902 50.000 13.08 0.0 0.00 2.17 R
2092 2430 2.270205 CAGGATGAGGCGGCAACT 59.730 61.111 13.08 0.0 39.69 3.16 R
3749 4211 0.105224 TGCCTTCGTTGGTTCTTCGA 59.895 50.000 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 4.757594 TGTGGATTCAAAATATGCTTGCC 58.242 39.130 0.00 0.00 0.00 4.52
89 92 7.495279 GTGGATTCAAAATATGCTTGCCATTTA 59.505 33.333 0.00 0.00 35.34 1.40
283 293 8.311836 TCCTAGAAATTTAGAAACTGTCGATGT 58.688 33.333 0.00 0.00 0.00 3.06
521 538 8.470040 AGTGCATAATGTTCATGAATTCAAAC 57.530 30.769 13.09 13.48 0.00 2.93
622 644 8.994429 ATGTTCACAAGTTACAAAAATGTTCA 57.006 26.923 0.00 0.00 0.00 3.18
623 645 8.994429 TGTTCACAAGTTACAAAAATGTTCAT 57.006 26.923 0.00 0.00 0.00 2.57
624 646 8.867935 TGTTCACAAGTTACAAAAATGTTCATG 58.132 29.630 0.00 0.00 0.00 3.07
625 647 9.081997 GTTCACAAGTTACAAAAATGTTCATGA 57.918 29.630 0.00 0.00 0.00 3.07
626 648 9.814899 TTCACAAGTTACAAAAATGTTCATGAT 57.185 25.926 0.00 0.00 0.00 2.45
627 649 9.814899 TCACAAGTTACAAAAATGTTCATGATT 57.185 25.926 0.00 0.00 0.00 2.57
656 678 9.566432 AGAAAATTGAGAATGATAGTGTATCCC 57.434 33.333 0.00 0.00 34.26 3.85
657 679 9.342308 GAAAATTGAGAATGATAGTGTATCCCA 57.658 33.333 0.00 0.00 34.26 4.37
658 680 8.915057 AAATTGAGAATGATAGTGTATCCCAG 57.085 34.615 0.00 0.00 34.26 4.45
659 681 7.623999 ATTGAGAATGATAGTGTATCCCAGT 57.376 36.000 0.00 0.00 34.26 4.00
660 682 6.410942 TGAGAATGATAGTGTATCCCAGTG 57.589 41.667 0.00 0.00 34.26 3.66
661 683 6.136155 TGAGAATGATAGTGTATCCCAGTGA 58.864 40.000 0.00 0.00 34.26 3.41
662 684 6.784473 TGAGAATGATAGTGTATCCCAGTGAT 59.216 38.462 0.00 0.00 37.49 3.06
663 685 7.002250 AGAATGATAGTGTATCCCAGTGATG 57.998 40.000 0.00 0.00 34.76 3.07
664 686 4.607293 TGATAGTGTATCCCAGTGATGC 57.393 45.455 0.00 0.00 36.68 3.91
665 687 3.966665 TGATAGTGTATCCCAGTGATGCA 59.033 43.478 0.00 0.00 42.85 3.96
666 688 2.996249 AGTGTATCCCAGTGATGCAG 57.004 50.000 0.00 0.00 45.21 4.41
667 689 1.134280 AGTGTATCCCAGTGATGCAGC 60.134 52.381 0.00 0.00 45.21 5.25
668 690 0.911053 TGTATCCCAGTGATGCAGCA 59.089 50.000 0.00 0.00 40.61 4.41
669 691 1.281577 TGTATCCCAGTGATGCAGCAA 59.718 47.619 6.05 0.00 40.61 3.91
670 692 1.672881 GTATCCCAGTGATGCAGCAAC 59.327 52.381 6.05 0.72 36.23 4.17
671 693 0.038599 ATCCCAGTGATGCAGCAACA 59.961 50.000 6.05 0.00 30.54 3.33
672 694 0.038599 TCCCAGTGATGCAGCAACAT 59.961 50.000 6.05 0.00 0.00 2.71
673 695 0.172578 CCCAGTGATGCAGCAACATG 59.827 55.000 6.05 6.14 0.00 3.21
674 696 0.885879 CCAGTGATGCAGCAACATGT 59.114 50.000 6.05 0.00 0.00 3.21
675 697 1.271379 CCAGTGATGCAGCAACATGTT 59.729 47.619 6.05 4.92 0.00 2.71
676 698 2.488937 CCAGTGATGCAGCAACATGTTA 59.511 45.455 6.05 0.00 0.00 2.41
677 699 3.129813 CCAGTGATGCAGCAACATGTTAT 59.870 43.478 6.05 0.01 0.00 1.89
678 700 4.348656 CAGTGATGCAGCAACATGTTATC 58.651 43.478 6.05 10.71 0.00 1.75
679 701 4.011698 AGTGATGCAGCAACATGTTATCA 58.988 39.130 6.05 13.20 0.00 2.15
680 702 4.643334 AGTGATGCAGCAACATGTTATCAT 59.357 37.500 19.00 15.11 32.51 2.45
681 703 5.126545 AGTGATGCAGCAACATGTTATCATT 59.873 36.000 19.00 14.19 32.51 2.57
682 704 5.231357 GTGATGCAGCAACATGTTATCATTG 59.769 40.000 19.00 11.35 32.51 2.82
683 705 4.787260 TGCAGCAACATGTTATCATTGT 57.213 36.364 11.53 0.00 31.15 2.71
684 706 4.735985 TGCAGCAACATGTTATCATTGTC 58.264 39.130 11.53 3.55 31.15 3.18
685 707 4.217983 TGCAGCAACATGTTATCATTGTCA 59.782 37.500 11.53 5.68 31.15 3.58
686 708 5.105675 TGCAGCAACATGTTATCATTGTCAT 60.106 36.000 11.53 0.00 31.15 3.06
687 709 5.808540 GCAGCAACATGTTATCATTGTCATT 59.191 36.000 11.53 0.00 31.15 2.57
688 710 6.237728 GCAGCAACATGTTATCATTGTCATTG 60.238 38.462 11.53 0.00 31.15 2.82
689 711 6.254804 CAGCAACATGTTATCATTGTCATTGG 59.745 38.462 11.53 0.00 31.15 3.16
690 712 6.153170 AGCAACATGTTATCATTGTCATTGGA 59.847 34.615 11.53 0.00 31.15 3.53
691 713 6.982141 GCAACATGTTATCATTGTCATTGGAT 59.018 34.615 11.53 0.00 31.15 3.41
692 714 8.136800 GCAACATGTTATCATTGTCATTGGATA 58.863 33.333 11.53 0.00 31.15 2.59
730 752 4.740431 GTTGCAACGCATGGGCCC 62.740 66.667 17.59 17.59 38.76 5.80
734 756 2.980475 CAACGCATGGGCCCATTT 59.020 55.556 35.69 23.78 36.38 2.32
735 757 1.448189 CAACGCATGGGCCCATTTG 60.448 57.895 35.69 30.00 36.38 2.32
738 760 2.126596 CGCATGGGCCCATTTGCTA 61.127 57.895 35.98 13.09 36.38 3.49
742 764 2.233271 CATGGGCCCATTTGCTAGTAG 58.767 52.381 35.69 16.41 33.90 2.57
781 803 3.561241 TGGCTGGCCGGTGTGTTA 61.561 61.111 14.55 0.00 39.42 2.41
796 818 4.470462 GTGTGTTACGTCGACAGTTCTAT 58.530 43.478 17.16 0.00 0.00 1.98
797 819 4.320164 GTGTGTTACGTCGACAGTTCTATG 59.680 45.833 17.16 0.00 0.00 2.23
802 824 2.287970 ACGTCGACAGTTCTATGCAACA 60.288 45.455 17.16 0.00 0.00 3.33
805 827 3.987868 GTCGACAGTTCTATGCAACAAGA 59.012 43.478 11.55 0.00 0.00 3.02
824 846 2.158957 AGAGGCAAATAGGAAATCGCGA 60.159 45.455 13.09 13.09 0.00 5.87
834 856 2.031682 AGGAAATCGCGATATTTGCTGC 60.032 45.455 24.00 3.54 43.35 5.25
878 900 1.689233 TGCTAAGTCCATCGCCCCT 60.689 57.895 0.00 0.00 0.00 4.79
899 921 0.842030 ACTTGGCCCATGAGTCCTGA 60.842 55.000 0.00 0.00 0.00 3.86
990 1033 1.807142 GTACTGCTGCTGGAAGAAACC 59.193 52.381 11.29 0.00 34.07 3.27
1053 1116 4.174305 ACCGCCTTTTGGTCCTTG 57.826 55.556 0.00 0.00 42.99 3.61
1054 1117 1.229076 ACCGCCTTTTGGTCCTTGT 59.771 52.632 0.00 0.00 42.99 3.16
1055 1118 0.822121 ACCGCCTTTTGGTCCTTGTC 60.822 55.000 0.00 0.00 42.99 3.18
1056 1119 1.524008 CCGCCTTTTGGTCCTTGTCC 61.524 60.000 0.00 0.00 42.99 4.02
1057 1120 0.537371 CGCCTTTTGGTCCTTGTCCT 60.537 55.000 0.00 0.00 42.99 3.85
1065 1128 0.612453 GGTCCTTGTCCTCGTCCTCT 60.612 60.000 0.00 0.00 0.00 3.69
1118 1215 3.557264 CGCCTTGTACTCCTCCTTTTTCT 60.557 47.826 0.00 0.00 0.00 2.52
1119 1216 4.399219 GCCTTGTACTCCTCCTTTTTCTT 58.601 43.478 0.00 0.00 0.00 2.52
1120 1217 4.456222 GCCTTGTACTCCTCCTTTTTCTTC 59.544 45.833 0.00 0.00 0.00 2.87
1121 1218 5.746361 GCCTTGTACTCCTCCTTTTTCTTCT 60.746 44.000 0.00 0.00 0.00 2.85
1122 1219 5.703130 CCTTGTACTCCTCCTTTTTCTTCTG 59.297 44.000 0.00 0.00 0.00 3.02
1123 1220 5.228945 TGTACTCCTCCTTTTTCTTCTGG 57.771 43.478 0.00 0.00 0.00 3.86
1124 1221 4.658901 TGTACTCCTCCTTTTTCTTCTGGT 59.341 41.667 0.00 0.00 0.00 4.00
1125 1222 4.797912 ACTCCTCCTTTTTCTTCTGGTT 57.202 40.909 0.00 0.00 0.00 3.67
1126 1223 5.906772 ACTCCTCCTTTTTCTTCTGGTTA 57.093 39.130 0.00 0.00 0.00 2.85
1127 1224 6.455690 ACTCCTCCTTTTTCTTCTGGTTAT 57.544 37.500 0.00 0.00 0.00 1.89
1128 1225 6.853490 ACTCCTCCTTTTTCTTCTGGTTATT 58.147 36.000 0.00 0.00 0.00 1.40
1129 1226 7.985589 ACTCCTCCTTTTTCTTCTGGTTATTA 58.014 34.615 0.00 0.00 0.00 0.98
1130 1227 8.445588 ACTCCTCCTTTTTCTTCTGGTTATTAA 58.554 33.333 0.00 0.00 0.00 1.40
1131 1228 9.467796 CTCCTCCTTTTTCTTCTGGTTATTAAT 57.532 33.333 0.00 0.00 0.00 1.40
1132 1229 9.822727 TCCTCCTTTTTCTTCTGGTTATTAATT 57.177 29.630 0.00 0.00 0.00 1.40
1174 1271 1.005294 GCGTTTGCCTGCTGATGTTG 61.005 55.000 0.00 0.00 33.98 3.33
1180 1277 5.335127 GTTTGCCTGCTGATGTTGTATTAG 58.665 41.667 0.00 0.00 0.00 1.73
1183 1280 6.173427 TGCCTGCTGATGTTGTATTAGATA 57.827 37.500 0.00 0.00 0.00 1.98
1248 1362 8.651389 TGGAACTAAATTAGGTGGATATCAGAG 58.349 37.037 4.83 0.00 0.00 3.35
1291 1407 7.950512 TGCTTGAAGAAAAACAATCCAGATTA 58.049 30.769 0.00 0.00 0.00 1.75
1293 1409 8.919661 GCTTGAAGAAAAACAATCCAGATTAAG 58.080 33.333 0.00 0.00 0.00 1.85
1297 1413 9.617975 GAAGAAAAACAATCCAGATTAAGACTG 57.382 33.333 5.73 5.73 35.43 3.51
1315 1431 0.636647 TGTCCCTGCCCTAGATCTCA 59.363 55.000 0.00 0.00 0.00 3.27
1316 1432 1.337118 GTCCCTGCCCTAGATCTCAG 58.663 60.000 0.00 0.00 0.00 3.35
1348 1465 2.237143 CAAGAATAGAGGGTGCCAGTCA 59.763 50.000 0.00 0.00 0.00 3.41
1397 1514 8.961294 ATATGCTAGGAGAATCATATTTGCTC 57.039 34.615 0.00 0.00 36.25 4.26
1409 1530 4.577693 TCATATTTGCTCTGCCTGTCATTC 59.422 41.667 0.00 0.00 0.00 2.67
1480 1631 1.970114 CAAGCACTCAGGCACCTGG 60.970 63.158 16.52 9.75 43.75 4.45
1513 1672 2.542020 TGAGAAACAGGCGATTGTGA 57.458 45.000 0.00 0.00 0.00 3.58
1520 1682 6.291377 AGAAACAGGCGATTGTGATGTATAT 58.709 36.000 0.00 0.00 0.00 0.86
1565 1735 6.708054 TCTGTGAAACTTCAGAAATCCTTCTC 59.292 38.462 0.00 0.00 37.52 2.87
1568 1738 6.148645 GTGAAACTTCAGAAATCCTTCTCTCC 59.851 42.308 0.00 0.00 40.05 3.71
1569 1739 4.464069 ACTTCAGAAATCCTTCTCTCCG 57.536 45.455 0.00 0.00 40.05 4.63
1587 1764 1.264288 CCGCAACTTCTCAACAGAACC 59.736 52.381 0.00 0.00 34.71 3.62
1685 1865 2.622942 TGTTCAGTTCAGTTTGGGATGC 59.377 45.455 0.00 0.00 0.00 3.91
1723 2026 3.963428 TCTTGGTAGCTCCTGTTCTTC 57.037 47.619 0.00 0.00 37.07 2.87
1758 2061 1.001974 ACTCGCTTCACATGCCTAACA 59.998 47.619 0.00 0.00 0.00 2.41
1781 2110 0.874390 TGTCCTGAATTTGCTGCGAC 59.126 50.000 0.00 0.00 0.00 5.19
1801 2130 2.096248 CTCAGGGCTAAGAGAACTCGT 58.904 52.381 0.00 0.00 33.74 4.18
1820 2149 0.326522 TTATGCCTCTGCCTCCTCCA 60.327 55.000 0.00 0.00 36.33 3.86
2085 2423 1.757118 GTCTGATCCGTGGAGATTGGA 59.243 52.381 0.00 0.00 35.96 3.53
2087 2425 3.574396 GTCTGATCCGTGGAGATTGGATA 59.426 47.826 0.00 0.00 42.46 2.59
2092 2430 5.071653 TGATCCGTGGAGATTGGATAATTCA 59.928 40.000 0.00 0.00 42.46 2.57
2094 2432 4.408921 TCCGTGGAGATTGGATAATTCAGT 59.591 41.667 0.00 0.00 0.00 3.41
2274 2612 1.794512 GGTAACTTCACCCGCGTTAA 58.205 50.000 4.92 0.00 31.91 2.01
2691 3060 1.195448 GTCACTTGATGCCGTGAACAG 59.805 52.381 0.00 0.00 41.35 3.16
2704 3092 0.823356 TGAACAGGAAGGCAAGGTGC 60.823 55.000 0.00 0.00 44.08 5.01
2795 3183 0.533755 CATGAACCCGGAGAGATGGC 60.534 60.000 0.73 0.00 0.00 4.40
2837 3225 8.589338 ACATATACTTCCCATGTTATCAGTCTC 58.411 37.037 0.00 0.00 28.56 3.36
2917 3305 2.939103 GCAGCTCGTGAATACTGGAATT 59.061 45.455 0.00 0.00 0.00 2.17
2975 3363 1.405526 GCACATTTCCTCGCTCTGGTA 60.406 52.381 0.00 0.00 0.00 3.25
2976 3364 2.743183 GCACATTTCCTCGCTCTGGTAT 60.743 50.000 0.00 0.00 0.00 2.73
3193 3632 8.012241 CAGATTGTAGAGTTTTCTTGTACTTGC 58.988 37.037 0.00 0.00 34.79 4.01
3233 3673 0.315251 GGGCTGCAACTTCCTTTCAC 59.685 55.000 0.50 0.00 0.00 3.18
3261 3701 5.661312 AGATACCTAAGGTGTTCATACTGCA 59.339 40.000 0.00 0.00 36.19 4.41
3275 3715 7.875554 TGTTCATACTGCAACAGAGTATTTGTA 59.124 33.333 0.78 0.00 34.94 2.41
3292 3732 3.980646 TGTACTGTGGTTGTTGATTGC 57.019 42.857 0.00 0.00 0.00 3.56
3312 3752 1.400846 CTCATGTGATGTGCTTGAGCC 59.599 52.381 0.00 0.00 41.18 4.70
3340 3780 4.899502 CAGTCTCACTGGGTAGAAATGTT 58.100 43.478 0.00 0.00 42.35 2.71
3372 3812 6.641474 AGAACATAACTTAAGGACTGCTACC 58.359 40.000 7.53 0.00 0.00 3.18
3384 3825 9.796180 TTAAGGACTGCTACCAATTTTTAACTA 57.204 29.630 0.00 0.00 0.00 2.24
3406 3847 8.757164 ACTAAAAATTGCACACTATTTTAGGC 57.243 30.769 20.74 0.00 39.33 3.93
3476 3937 8.883731 GCATTAGGGTTAATATATAGTGCACAG 58.116 37.037 21.04 0.00 0.00 3.66
3479 3940 6.231211 AGGGTTAATATATAGTGCACAGTGC 58.769 40.000 21.04 19.37 45.29 4.40
3482 3943 8.041323 GGGTTAATATATAGTGCACAGTGCTAT 58.959 37.037 25.83 17.66 45.31 2.97
3509 3970 0.459489 GCACACCAAGTTCAGCCAAA 59.541 50.000 0.00 0.00 0.00 3.28
3586 4047 1.251251 AAACCAGGCAGACAGATTGC 58.749 50.000 0.00 0.00 40.80 3.56
3595 4056 2.551459 GCAGACAGATTGCTCAACAACT 59.449 45.455 0.00 0.00 42.27 3.16
3601 4062 8.506437 CAGACAGATTGCTCAACAACTAAATAA 58.494 33.333 0.00 0.00 42.27 1.40
3615 4076 8.709386 ACAACTAAATAACTCTGCATCTGTAG 57.291 34.615 0.00 0.00 0.00 2.74
3627 4088 2.753296 CATCTGTAGCTAGCTTCAGCC 58.247 52.381 34.39 15.62 42.84 4.85
3676 4137 8.533569 ACCTCTGTTTTTAAAAGGAGATCAAA 57.466 30.769 19.75 0.00 0.00 2.69
3730 4192 7.839200 AGGACATAGTTAAATAAAAGCCCACAT 59.161 33.333 0.00 0.00 0.00 3.21
3749 4211 4.333649 CACATACAATGCCGAAGAGTGATT 59.666 41.667 0.00 0.00 0.00 2.57
3769 4231 0.234884 CGAAGAACCAACGAAGGCAC 59.765 55.000 0.00 0.00 0.00 5.01
3786 4248 3.821033 AGGCACTGTTTCAGGATGTAAAC 59.179 43.478 1.90 0.00 37.18 2.01
3790 4252 3.397955 ACTGTTTCAGGATGTAAACCCCT 59.602 43.478 1.90 0.00 36.19 4.79
3806 4268 3.690460 ACCCCTGTCTCTTTTATGCAAG 58.310 45.455 0.00 0.00 0.00 4.01
3827 4290 6.737346 GCAAGTGGAAGCAATTAACAAGGTTA 60.737 38.462 0.00 0.00 0.00 2.85
3829 4292 7.354751 AGTGGAAGCAATTAACAAGGTTAAA 57.645 32.000 5.74 0.00 0.00 1.52
3843 4306 5.119434 ACAAGGTTAAACAAAAACAACAGCG 59.881 36.000 0.00 0.00 0.00 5.18
3844 4307 4.177783 AGGTTAAACAAAAACAACAGCGG 58.822 39.130 0.00 0.00 0.00 5.52
3848 4311 0.099791 ACAAAAACAACAGCGGGTCG 59.900 50.000 0.00 0.00 0.00 4.79
3855 4319 1.374252 AACAGCGGGTCGACATGTC 60.374 57.895 18.91 16.21 0.00 3.06
3975 4441 8.043710 CAGTATATTCAGGTGGAAGAACTCTTT 58.956 37.037 0.00 0.00 39.30 2.52
3976 4442 8.261522 AGTATATTCAGGTGGAAGAACTCTTTC 58.738 37.037 0.00 0.00 39.30 2.62
3977 4443 5.574970 ATTCAGGTGGAAGAACTCTTTCT 57.425 39.130 0.00 0.00 44.53 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.909708 AATCCACAAACATTGTATGATTTACG 57.090 30.769 11.38 0.00 43.23 3.18
55 56 8.259049 AGCATATTTTGAATCCACAAACATTG 57.741 30.769 0.00 0.00 39.08 2.82
262 271 9.742552 GTAAGACATCGACAGTTTCTAAATTTC 57.257 33.333 0.00 0.00 0.00 2.17
268 277 8.827177 ATTTTGTAAGACATCGACAGTTTCTA 57.173 30.769 0.00 0.00 0.00 2.10
270 279 8.709646 ACTATTTTGTAAGACATCGACAGTTTC 58.290 33.333 0.00 0.00 0.00 2.78
475 492 9.598517 TGCACTATTTGAAAACATTTTTCTTCT 57.401 25.926 11.58 1.17 0.00 2.85
499 516 9.697250 CATTGTTTGAATTCATGAACATTATGC 57.303 29.630 20.80 0.00 32.64 3.14
543 561 9.701355 CATGAACACTTTTACAAATTTTGAACC 57.299 29.630 15.81 0.00 0.00 3.62
630 652 9.566432 GGGATACACTATCATTCTCAATTTTCT 57.434 33.333 0.00 0.00 36.91 2.52
631 653 9.342308 TGGGATACACTATCATTCTCAATTTTC 57.658 33.333 0.00 0.00 36.91 2.29
632 654 9.347240 CTGGGATACACTATCATTCTCAATTTT 57.653 33.333 0.00 0.00 36.91 1.82
633 655 8.497745 ACTGGGATACACTATCATTCTCAATTT 58.502 33.333 0.00 0.00 36.91 1.82
634 656 7.935755 CACTGGGATACACTATCATTCTCAATT 59.064 37.037 0.00 0.00 36.91 2.32
635 657 7.290948 TCACTGGGATACACTATCATTCTCAAT 59.709 37.037 0.00 0.00 36.91 2.57
636 658 6.611236 TCACTGGGATACACTATCATTCTCAA 59.389 38.462 0.00 0.00 36.91 3.02
637 659 6.136155 TCACTGGGATACACTATCATTCTCA 58.864 40.000 0.00 0.00 36.91 3.27
638 660 6.656632 TCACTGGGATACACTATCATTCTC 57.343 41.667 0.00 0.00 36.91 2.87
639 661 6.519721 GCATCACTGGGATACACTATCATTCT 60.520 42.308 0.00 0.00 36.91 2.40
640 662 5.641209 GCATCACTGGGATACACTATCATTC 59.359 44.000 0.00 0.00 36.91 2.67
641 663 5.072193 TGCATCACTGGGATACACTATCATT 59.928 40.000 0.00 0.00 36.91 2.57
642 664 4.594491 TGCATCACTGGGATACACTATCAT 59.406 41.667 0.00 0.00 36.91 2.45
643 665 3.966665 TGCATCACTGGGATACACTATCA 59.033 43.478 0.00 0.00 36.91 2.15
644 666 4.564041 CTGCATCACTGGGATACACTATC 58.436 47.826 0.00 0.00 33.95 2.08
645 667 3.244353 GCTGCATCACTGGGATACACTAT 60.244 47.826 0.00 0.00 33.95 2.12
646 668 2.103094 GCTGCATCACTGGGATACACTA 59.897 50.000 0.00 0.00 33.95 2.74
647 669 1.134280 GCTGCATCACTGGGATACACT 60.134 52.381 0.00 0.00 33.95 3.55
648 670 1.303309 GCTGCATCACTGGGATACAC 58.697 55.000 0.00 0.00 33.95 2.90
649 671 0.911053 TGCTGCATCACTGGGATACA 59.089 50.000 0.00 0.00 33.95 2.29
650 672 1.672881 GTTGCTGCATCACTGGGATAC 59.327 52.381 1.84 0.00 33.95 2.24
651 673 1.281577 TGTTGCTGCATCACTGGGATA 59.718 47.619 9.22 0.00 33.95 2.59
652 674 0.038599 TGTTGCTGCATCACTGGGAT 59.961 50.000 9.22 0.00 36.39 3.85
653 675 0.038599 ATGTTGCTGCATCACTGGGA 59.961 50.000 15.01 0.00 0.00 4.37
654 676 0.172578 CATGTTGCTGCATCACTGGG 59.827 55.000 15.01 3.05 0.00 4.45
655 677 0.885879 ACATGTTGCTGCATCACTGG 59.114 50.000 15.01 10.41 0.00 4.00
656 678 2.717580 AACATGTTGCTGCATCACTG 57.282 45.000 11.07 15.19 0.00 3.66
657 679 4.011698 TGATAACATGTTGCTGCATCACT 58.988 39.130 21.42 6.34 0.00 3.41
658 680 4.359971 TGATAACATGTTGCTGCATCAC 57.640 40.909 21.42 6.54 0.00 3.06
659 681 5.105675 ACAATGATAACATGTTGCTGCATCA 60.106 36.000 21.42 19.74 36.79 3.07
660 682 5.345702 ACAATGATAACATGTTGCTGCATC 58.654 37.500 21.42 15.01 36.79 3.91
661 683 5.105675 TGACAATGATAACATGTTGCTGCAT 60.106 36.000 21.42 14.47 36.79 3.96
662 684 4.217983 TGACAATGATAACATGTTGCTGCA 59.782 37.500 21.42 12.95 36.79 4.41
663 685 4.735985 TGACAATGATAACATGTTGCTGC 58.264 39.130 21.42 7.91 36.79 5.25
664 686 6.254804 CCAATGACAATGATAACATGTTGCTG 59.745 38.462 21.42 12.19 36.79 4.41
665 687 6.153170 TCCAATGACAATGATAACATGTTGCT 59.847 34.615 21.42 8.23 36.79 3.91
666 688 6.331845 TCCAATGACAATGATAACATGTTGC 58.668 36.000 21.42 13.03 36.79 4.17
720 742 2.079020 CTAGCAAATGGGCCCATGCG 62.079 60.000 38.06 29.85 38.85 4.73
724 746 1.590591 TCTACTAGCAAATGGGCCCA 58.409 50.000 30.92 30.92 0.00 5.36
755 777 2.689034 GGCCAGCCACCCTACTCT 60.689 66.667 3.12 0.00 35.81 3.24
769 791 3.107661 CGACGTAACACACCGGCC 61.108 66.667 0.00 0.00 0.00 6.13
781 803 2.287970 TGTTGCATAGAACTGTCGACGT 60.288 45.455 11.62 9.08 0.00 4.34
796 818 3.153369 TCCTATTTGCCTCTTGTTGCA 57.847 42.857 0.00 0.00 35.27 4.08
797 819 4.519540 TTTCCTATTTGCCTCTTGTTGC 57.480 40.909 0.00 0.00 0.00 4.17
802 824 2.614057 CGCGATTTCCTATTTGCCTCTT 59.386 45.455 0.00 0.00 0.00 2.85
805 827 2.325583 TCGCGATTTCCTATTTGCCT 57.674 45.000 3.71 0.00 0.00 4.75
842 864 2.513738 AGCAGCAAATACCCCATTCCTA 59.486 45.455 0.00 0.00 0.00 2.94
843 865 1.288932 AGCAGCAAATACCCCATTCCT 59.711 47.619 0.00 0.00 0.00 3.36
846 868 3.954258 GACTTAGCAGCAAATACCCCATT 59.046 43.478 0.00 0.00 0.00 3.16
847 869 3.555966 GACTTAGCAGCAAATACCCCAT 58.444 45.455 0.00 0.00 0.00 4.00
848 870 2.356741 GGACTTAGCAGCAAATACCCCA 60.357 50.000 0.00 0.00 0.00 4.96
960 986 1.275291 AGCAGCAGTACGGTACATGTT 59.725 47.619 19.62 10.43 0.00 2.71
963 989 0.175760 CCAGCAGCAGTACGGTACAT 59.824 55.000 19.62 3.30 0.00 2.29
1041 1104 2.143925 GACGAGGACAAGGACCAAAAG 58.856 52.381 0.00 0.00 0.00 2.27
1046 1109 0.612453 AGAGGACGAGGACAAGGACC 60.612 60.000 0.00 0.00 0.00 4.46
1053 1116 2.490685 GGCGAAGAGGACGAGGAC 59.509 66.667 0.00 0.00 0.00 3.85
1054 1117 3.132139 CGGCGAAGAGGACGAGGA 61.132 66.667 0.00 0.00 0.00 3.71
1055 1118 3.132139 TCGGCGAAGAGGACGAGG 61.132 66.667 7.35 0.00 0.00 4.63
1056 1119 2.100603 GTCGGCGAAGAGGACGAG 59.899 66.667 12.92 0.00 35.88 4.18
1065 1128 0.381801 GAGGGTATTACGTCGGCGAA 59.618 55.000 20.03 6.59 42.00 4.70
1118 1215 9.638239 GATGCAGAAACAAATTAATAACCAGAA 57.362 29.630 0.00 0.00 0.00 3.02
1119 1216 9.023962 AGATGCAGAAACAAATTAATAACCAGA 57.976 29.630 0.00 0.00 0.00 3.86
1120 1217 9.294030 GAGATGCAGAAACAAATTAATAACCAG 57.706 33.333 0.00 0.00 0.00 4.00
1121 1218 8.801299 TGAGATGCAGAAACAAATTAATAACCA 58.199 29.630 0.00 0.00 0.00 3.67
1122 1219 9.807649 ATGAGATGCAGAAACAAATTAATAACC 57.192 29.630 0.00 0.00 0.00 2.85
1126 1223 8.127327 CGAGATGAGATGCAGAAACAAATTAAT 58.873 33.333 0.00 0.00 0.00 1.40
1127 1224 7.119699 ACGAGATGAGATGCAGAAACAAATTAA 59.880 33.333 0.00 0.00 0.00 1.40
1128 1225 6.595326 ACGAGATGAGATGCAGAAACAAATTA 59.405 34.615 0.00 0.00 0.00 1.40
1129 1226 5.413833 ACGAGATGAGATGCAGAAACAAATT 59.586 36.000 0.00 0.00 0.00 1.82
1130 1227 4.940046 ACGAGATGAGATGCAGAAACAAAT 59.060 37.500 0.00 0.00 0.00 2.32
1131 1228 4.318332 ACGAGATGAGATGCAGAAACAAA 58.682 39.130 0.00 0.00 0.00 2.83
1132 1229 3.930336 ACGAGATGAGATGCAGAAACAA 58.070 40.909 0.00 0.00 0.00 2.83
1133 1230 3.599730 ACGAGATGAGATGCAGAAACA 57.400 42.857 0.00 0.00 0.00 2.83
1134 1231 3.484886 GCAACGAGATGAGATGCAGAAAC 60.485 47.826 0.00 0.00 37.00 2.78
1244 1344 9.798994 AAGCATAGCAAAATAAATCTTTCTCTG 57.201 29.630 0.00 0.00 0.00 3.35
1256 1370 9.539825 TTGTTTTTCTTCAAGCATAGCAAAATA 57.460 25.926 0.00 0.00 0.00 1.40
1291 1407 0.413832 TCTAGGGCAGGGACAGTCTT 59.586 55.000 0.00 0.00 0.00 3.01
1293 1409 1.044611 GATCTAGGGCAGGGACAGTC 58.955 60.000 0.00 0.00 0.00 3.51
1297 1413 1.133325 TCTGAGATCTAGGGCAGGGAC 60.133 57.143 8.78 0.00 0.00 4.46
1315 1431 4.197750 CTCTATTCTTGCCTGCAATGTCT 58.802 43.478 4.84 0.00 35.20 3.41
1316 1432 3.314635 CCTCTATTCTTGCCTGCAATGTC 59.685 47.826 4.84 0.00 35.20 3.06
1348 1465 0.251922 ACAGGCATGGCAAATCAGGT 60.252 50.000 22.64 4.74 0.00 4.00
1420 1541 2.887152 GTGTCAAACTGAATCAGGCCTT 59.113 45.455 15.38 2.19 35.51 4.35
1421 1542 2.107204 AGTGTCAAACTGAATCAGGCCT 59.893 45.455 15.38 0.00 37.88 5.19
1471 1622 2.291800 ACTGAATAAATGCCAGGTGCCT 60.292 45.455 0.00 0.00 40.16 4.75
1480 1631 6.089954 GCCTGTTTCTCAAACTGAATAAATGC 59.910 38.462 7.39 0.00 41.24 3.56
1543 1713 6.148645 GGAGAGAAGGATTTCTGAAGTTTCAC 59.851 42.308 0.00 0.00 43.63 3.18
1555 1725 3.008485 AGAAGTTGCGGAGAGAAGGATTT 59.992 43.478 0.00 0.00 0.00 2.17
1565 1735 2.154854 TCTGTTGAGAAGTTGCGGAG 57.845 50.000 0.00 0.00 0.00 4.63
1568 1738 1.264288 GGGTTCTGTTGAGAAGTTGCG 59.736 52.381 0.00 0.00 38.95 4.85
1569 1739 2.297701 TGGGTTCTGTTGAGAAGTTGC 58.702 47.619 0.00 0.00 38.95 4.17
1587 1764 0.458669 GATGCAGGCACAGGATTTGG 59.541 55.000 0.00 0.00 0.00 3.28
1697 2000 7.676683 AGAACAGGAGCTACCAAGATAATAA 57.323 36.000 0.00 0.00 42.04 1.40
1700 2003 5.721960 AGAAGAACAGGAGCTACCAAGATAA 59.278 40.000 0.00 0.00 42.04 1.75
1701 2004 5.273208 AGAAGAACAGGAGCTACCAAGATA 58.727 41.667 0.00 0.00 42.04 1.98
1723 2026 7.010460 TGTGAAGCGAGTCATAATTGTATGAAG 59.990 37.037 0.00 0.00 46.05 3.02
1758 2061 3.005684 TCGCAGCAAATTCAGGACAAAAT 59.994 39.130 0.00 0.00 0.00 1.82
1781 2110 2.096248 ACGAGTTCTCTTAGCCCTGAG 58.904 52.381 0.00 0.00 0.00 3.35
1801 2130 0.326522 TGGAGGAGGCAGAGGCATAA 60.327 55.000 0.00 0.00 43.71 1.90
1820 2149 2.123428 GCCTGGATGCGGCAAAGAT 61.123 57.895 6.82 0.00 46.77 2.40
2085 2423 2.418368 TGAGGCGGCAACTGAATTAT 57.582 45.000 13.08 0.00 0.00 1.28
2087 2425 1.098050 GATGAGGCGGCAACTGAATT 58.902 50.000 13.08 0.00 0.00 2.17
2092 2430 2.270205 CAGGATGAGGCGGCAACT 59.730 61.111 13.08 0.00 39.69 3.16
2094 2432 4.802051 GCCAGGATGAGGCGGCAA 62.802 66.667 13.08 0.00 44.25 4.52
2691 3060 1.856265 CTTCACGCACCTTGCCTTCC 61.856 60.000 0.00 0.00 41.12 3.46
2704 3092 0.944386 CCAACCTGTCCAACTTCACG 59.056 55.000 0.00 0.00 0.00 4.35
2795 3183 1.247567 ATGTGGTTGCTTTTCCCTCG 58.752 50.000 0.00 0.00 0.00 4.63
2975 3363 1.027357 GTCGCATCCTCAATTGCCAT 58.973 50.000 0.00 0.00 35.41 4.40
2976 3364 1.031571 GGTCGCATCCTCAATTGCCA 61.032 55.000 0.00 0.00 35.41 4.92
3193 3632 3.181507 CCAGACCATGTTATCAAGTTGCG 60.182 47.826 0.00 0.00 0.00 4.85
3233 3673 8.353684 CAGTATGAACACCTTAGGTATCTAGTG 58.646 40.741 2.52 9.04 39.69 2.74
3261 3701 6.354130 ACAACCACAGTACAAATACTCTGTT 58.646 36.000 0.00 0.00 39.80 3.16
3275 3715 2.653726 TGAGCAATCAACAACCACAGT 58.346 42.857 0.00 0.00 0.00 3.55
3292 3732 1.400846 GGCTCAAGCACATCACATGAG 59.599 52.381 0.00 0.00 44.36 2.90
3312 3752 7.406031 TTTCTACCCAGTGAGACTGTTATAG 57.594 40.000 3.18 2.57 44.50 1.31
3356 3796 8.573885 GTTAAAAATTGGTAGCAGTCCTTAAGT 58.426 33.333 0.97 0.00 0.00 2.24
3384 3825 6.650390 CCAGCCTAAAATAGTGTGCAATTTTT 59.350 34.615 11.07 5.66 36.80 1.94
3406 3847 0.393537 GACTTGCATCCCCACTCCAG 60.394 60.000 0.00 0.00 0.00 3.86
3586 4047 8.173775 CAGATGCAGAGTTATTTAGTTGTTGAG 58.826 37.037 0.00 0.00 0.00 3.02
3595 4056 7.014711 AGCTAGCTACAGATGCAGAGTTATTTA 59.985 37.037 17.69 0.00 0.00 1.40
3601 4062 2.665165 AGCTAGCTACAGATGCAGAGT 58.335 47.619 17.69 0.00 0.00 3.24
3615 4076 2.751806 AGAATTGTTGGCTGAAGCTAGC 59.248 45.455 6.62 6.62 42.94 3.42
3684 4145 6.016360 TGTCCTTTGTTTGTTCCATACATCTG 60.016 38.462 0.00 0.00 36.44 2.90
3701 4162 8.527810 TGGGCTTTTATTTAACTATGTCCTTTG 58.472 33.333 0.00 0.00 0.00 2.77
3705 4166 7.399245 TGTGGGCTTTTATTTAACTATGTCC 57.601 36.000 0.00 0.00 0.00 4.02
3730 4192 3.119280 TCGAATCACTCTTCGGCATTGTA 60.119 43.478 6.40 0.00 46.12 2.41
3749 4211 0.105224 TGCCTTCGTTGGTTCTTCGA 59.895 50.000 0.00 0.00 0.00 3.71
3769 4231 4.034285 AGGGGTTTACATCCTGAAACAG 57.966 45.455 0.00 0.00 37.30 3.16
3786 4248 3.441572 CACTTGCATAAAAGAGACAGGGG 59.558 47.826 0.00 0.00 0.00 4.79
3790 4252 4.216257 GCTTCCACTTGCATAAAAGAGACA 59.784 41.667 0.00 0.00 0.00 3.41
3806 4268 6.981559 TGTTTAACCTTGTTAATTGCTTCCAC 59.018 34.615 0.69 0.00 0.00 4.02
3827 4290 2.612604 GACCCGCTGTTGTTTTTGTTT 58.387 42.857 0.00 0.00 0.00 2.83
3829 4292 0.099791 CGACCCGCTGTTGTTTTTGT 59.900 50.000 0.00 0.00 0.00 2.83
3848 4311 2.216263 GCAAAAACTTGTGCGACATGTC 59.784 45.455 16.21 16.21 35.74 3.06
3855 4319 0.102120 TGGAGGCAAAAACTTGTGCG 59.898 50.000 0.00 0.00 41.85 5.34
3925 4391 6.936335 TGCTCATAGATGTCAAAAGACAAGAA 59.064 34.615 2.13 0.00 38.69 2.52
3944 4410 5.604231 TCTTCCACCTGAATATACTGCTCAT 59.396 40.000 0.00 0.00 31.06 2.90
3975 4441 0.252513 TTGAGGAATCACCGGGGAGA 60.253 55.000 14.24 3.94 44.74 3.71
3976 4442 0.618458 TTTGAGGAATCACCGGGGAG 59.382 55.000 14.24 0.00 44.74 4.30
3977 4443 1.068948 TTTTGAGGAATCACCGGGGA 58.931 50.000 9.99 9.99 44.74 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.