Multiple sequence alignment - TraesCS4A01G453200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G453200 chr4A 100.000 3944 0 0 1 3944 717809834 717805891 0.000000e+00 7284
1 TraesCS4A01G453200 chr4A 89.429 2488 124 45 893 3312 717255351 717257767 0.000000e+00 3009
2 TraesCS4A01G453200 chr4A 92.343 1972 103 16 1265 3204 717282228 717284183 0.000000e+00 2761
3 TraesCS4A01G453200 chr4A 95.432 1598 56 7 1641 3222 717220923 717222519 0.000000e+00 2531
4 TraesCS4A01G453200 chr4A 93.958 1291 68 7 1655 2939 717757381 717756095 0.000000e+00 1943
5 TraesCS4A01G453200 chr4A 91.483 634 32 5 3319 3944 717257808 717258427 0.000000e+00 852
6 TraesCS4A01G453200 chr4A 94.466 506 22 1 3319 3818 717222671 717223176 0.000000e+00 774
7 TraesCS4A01G453200 chr4A 94.323 458 20 2 3367 3818 717284187 717284644 0.000000e+00 697
8 TraesCS4A01G453200 chr4A 93.883 376 22 1 3570 3944 717755454 717755079 2.060000e-157 566
9 TraesCS4A01G453200 chr4A 82.124 565 74 7 249 789 717252943 717253504 3.590000e-125 459
10 TraesCS4A01G453200 chr4A 93.174 293 12 3 2938 3222 717756045 717755753 1.310000e-114 424
11 TraesCS4A01G453200 chr4A 87.887 355 18 10 1033 1378 717220392 717220730 1.030000e-105 394
12 TraesCS4A01G453200 chr4A 86.517 178 17 2 955 1125 717760712 717760535 5.200000e-44 189
13 TraesCS4A01G453200 chr4A 89.041 146 15 1 1440 1584 717220765 717220910 3.130000e-41 180
14 TraesCS4A01G453200 chr4A 96.226 106 4 0 3207 3312 717755740 717755635 1.460000e-39 174
15 TraesCS4A01G453200 chr4A 96.939 98 3 0 3207 3304 717222533 717222630 8.770000e-37 165
16 TraesCS4A01G453200 chr4A 91.765 85 5 2 858 942 717760833 717760751 2.490000e-22 117
17 TraesCS4A01G453200 chr7A 91.285 2754 157 32 221 2930 16437768 16435054 0.000000e+00 3679
18 TraesCS4A01G453200 chr7A 91.549 2189 128 23 783 2930 16325090 16322918 0.000000e+00 2964
19 TraesCS4A01G453200 chr7A 91.035 1439 88 24 2533 3944 16430456 16429032 0.000000e+00 1905
20 TraesCS4A01G453200 chr7A 94.586 905 45 2 1646 2548 16432656 16431754 0.000000e+00 1397
21 TraesCS4A01G453200 chr7A 93.040 819 55 2 2495 3312 16394809 16393992 0.000000e+00 1195
22 TraesCS4A01G453200 chr7A 92.089 632 28 2 3319 3944 16393954 16393339 0.000000e+00 870
23 TraesCS4A01G453200 chr7A 89.137 672 62 8 1 672 16326269 16325609 0.000000e+00 826
24 TraesCS4A01G453200 chr7A 90.566 477 37 2 3476 3944 15820132 15820608 3.350000e-175 625
25 TraesCS4A01G453200 chr7A 95.337 386 17 1 2928 3312 16317905 16317520 2.610000e-171 612
26 TraesCS4A01G453200 chr7A 89.583 432 36 3 3522 3944 15791605 15792036 1.250000e-149 540
27 TraesCS4A01G453200 chr7A 82.787 366 28 12 1277 1620 16433005 16432653 1.070000e-75 294
28 TraesCS4A01G453200 chr7A 84.270 178 26 2 1192 1368 15787134 15787310 5.240000e-39 172
29 TraesCS4A01G453200 chr7A 84.270 178 26 2 1192 1368 15815017 15815193 5.240000e-39 172
30 TraesCS4A01G453200 chr7A 92.000 100 8 0 1271 1370 15790464 15790563 1.480000e-29 141
31 TraesCS4A01G453200 chr7A 89.000 100 7 1 1173 1268 16433142 16433043 1.920000e-23 121
32 TraesCS4A01G453200 chr7D 93.140 1968 112 8 1677 3627 16997783 16995822 0.000000e+00 2865
33 TraesCS4A01G453200 chr7D 91.272 1902 103 18 1436 3312 16756106 16757969 0.000000e+00 2534
34 TraesCS4A01G453200 chr7D 84.721 1165 113 26 1 1110 17129441 17128287 0.000000e+00 1105
35 TraesCS4A01G453200 chr7D 94.462 632 26 4 3319 3944 16758011 16758639 0.000000e+00 965
36 TraesCS4A01G453200 chr7D 93.207 633 35 3 3319 3944 17124612 17123981 0.000000e+00 924
37 TraesCS4A01G453200 chr7D 85.862 679 83 7 1 672 16998551 16997879 0.000000e+00 710
38 TraesCS4A01G453200 chr7D 91.608 429 30 1 2776 3198 17125158 17124730 4.390000e-164 588
39 TraesCS4A01G453200 chr7D 85.625 320 34 4 1265 1584 17126285 17125978 3.800000e-85 326
40 TraesCS4A01G453200 chr7D 85.556 180 20 5 1192 1368 16751147 16751323 2.420000e-42 183
41 TraesCS4A01G453200 chr7D 86.131 137 10 2 1142 1269 17128286 17128150 5.310000e-29 139
42 TraesCS4A01G453200 chr7D 93.590 78 5 0 3232 3309 17124735 17124658 2.490000e-22 117
43 TraesCS4A01G453200 chr7B 89.093 1907 153 25 1436 3312 655815573 655813692 0.000000e+00 2318
44 TraesCS4A01G453200 chr7B 92.405 632 39 4 3321 3944 655813648 655813018 0.000000e+00 893
45 TraesCS4A01G453200 chr7B 92.553 94 7 0 1277 1370 655815700 655815607 6.870000e-28 135
46 TraesCS4A01G453200 chrUn 77.958 1420 241 47 1629 3015 318851789 318853169 0.000000e+00 822
47 TraesCS4A01G453200 chrUn 84.270 178 26 2 1192 1368 318851407 318851583 5.240000e-39 172
48 TraesCS4A01G453200 chr2A 83.900 441 42 16 1198 1622 745558823 745559250 1.030000e-105 394


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G453200 chr4A 717805891 717809834 3943 True 7284.000000 7284 100.000000 1 3944 1 chr4A.!!$R1 3943
1 TraesCS4A01G453200 chr4A 717282228 717284644 2416 False 1729.000000 2761 93.333000 1265 3818 2 chr4A.!!$F3 2553
2 TraesCS4A01G453200 chr4A 717252943 717258427 5484 False 1440.000000 3009 87.678667 249 3944 3 chr4A.!!$F2 3695
3 TraesCS4A01G453200 chr4A 717220392 717223176 2784 False 808.800000 2531 92.753000 1033 3818 5 chr4A.!!$F1 2785
4 TraesCS4A01G453200 chr4A 717755079 717760833 5754 True 568.833333 1943 92.587167 858 3944 6 chr4A.!!$R2 3086
5 TraesCS4A01G453200 chr7A 16322918 16326269 3351 True 1895.000000 2964 90.343000 1 2930 2 chr7A.!!$R2 2929
6 TraesCS4A01G453200 chr7A 16429032 16437768 8736 True 1479.200000 3679 89.738600 221 3944 5 chr7A.!!$R4 3723
7 TraesCS4A01G453200 chr7A 16393339 16394809 1470 True 1032.500000 1195 92.564500 2495 3944 2 chr7A.!!$R3 1449
8 TraesCS4A01G453200 chr7A 15787134 15792036 4902 False 284.333333 540 88.617667 1192 3944 3 chr7A.!!$F3 2752
9 TraesCS4A01G453200 chr7D 16995822 16998551 2729 True 1787.500000 2865 89.501000 1 3627 2 chr7D.!!$R1 3626
10 TraesCS4A01G453200 chr7D 16756106 16758639 2533 False 1749.500000 2534 92.867000 1436 3944 2 chr7D.!!$F2 2508
11 TraesCS4A01G453200 chr7D 17123981 17129441 5460 True 533.166667 1105 89.147000 1 3944 6 chr7D.!!$R2 3943
12 TraesCS4A01G453200 chr7B 655813018 655815700 2682 True 1115.333333 2318 91.350333 1277 3944 3 chr7B.!!$R1 2667
13 TraesCS4A01G453200 chrUn 318851407 318853169 1762 False 497.000000 822 81.114000 1192 3015 2 chrUn.!!$F1 1823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 1310 0.031857 CACAAACGGATGCTTTGCCA 59.968 50.000 8.36 0.0 32.71 4.92 F
816 1319 2.224018 GGATGCTTTGCCAACTCAAACA 60.224 45.455 0.00 0.0 32.99 2.83 F
1896 15727 0.238289 CCACTTGTCGTCATTGGTGC 59.762 55.000 3.56 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 15727 0.179153 TGTGCGCTGAGAAGAGATCG 60.179 55.0 9.73 0.00 0.00 3.69 R
2265 16111 0.618680 ACAGATAGGCTCCAGCACCA 60.619 55.0 0.03 0.00 44.36 4.17 R
3613 18948 0.250814 TGCACCATGTCAGATGTGCA 60.251 50.0 17.66 17.66 44.11 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.107993 CTGGGATGAGCATGACGTGT 60.108 55.000 0.00 0.00 0.00 4.49
91 92 1.186200 AGCGCAGTCACATTCTAGGA 58.814 50.000 11.47 0.00 0.00 2.94
95 96 2.263077 GCAGTCACATTCTAGGACACG 58.737 52.381 0.00 0.00 34.04 4.49
178 179 2.356278 CCCCACCACCACCAGATG 59.644 66.667 0.00 0.00 0.00 2.90
188 189 1.283029 ACCACCAGATGCACATTAGCT 59.717 47.619 0.00 0.00 34.99 3.32
194 195 4.072839 CCAGATGCACATTAGCTCATGAT 58.927 43.478 14.77 0.00 34.99 2.45
204 205 1.714541 AGCTCATGATGGTCGAGGAT 58.285 50.000 0.00 0.00 0.00 3.24
206 207 1.607509 GCTCATGATGGTCGAGGATGG 60.608 57.143 0.00 0.00 0.00 3.51
207 208 0.394192 TCATGATGGTCGAGGATGGC 59.606 55.000 0.00 0.00 0.00 4.40
208 209 0.947660 CATGATGGTCGAGGATGGCG 60.948 60.000 0.00 0.00 0.00 5.69
237 238 2.081161 GGGTGAGGAGGGCCATGAT 61.081 63.158 6.18 0.00 36.29 2.45
278 279 1.972660 GAACGCCTAGTGGGATGGCT 61.973 60.000 0.00 0.00 44.09 4.75
293 294 1.300963 GGCTTGGAGGTGCAGATCA 59.699 57.895 0.00 0.00 0.00 2.92
343 344 2.354401 CGAGCTGGAGGAGGCAGAA 61.354 63.158 0.00 0.00 0.00 3.02
425 444 2.967076 CGTGCACGCCAGAGTTGT 60.967 61.111 28.16 0.00 0.00 3.32
491 517 3.249189 ACATGCCACCACCTCCGT 61.249 61.111 0.00 0.00 0.00 4.69
559 585 2.046217 GCCTCCCTTCGTTGACCC 60.046 66.667 0.00 0.00 0.00 4.46
565 591 2.030562 CTTCGTTGACCCCAGCGT 59.969 61.111 0.00 0.00 45.35 5.07
621 648 2.283529 ATGGAGTGAAGACGGCGGT 61.284 57.895 13.24 0.00 0.00 5.68
631 658 4.250305 ACGGCGGTGAAGGCTTGT 62.250 61.111 13.24 0.00 34.19 3.16
632 659 2.978010 CGGCGGTGAAGGCTTGTT 60.978 61.111 3.46 0.00 34.19 2.83
633 660 2.954611 GGCGGTGAAGGCTTGTTC 59.045 61.111 3.46 0.00 0.00 3.18
634 661 1.600916 GGCGGTGAAGGCTTGTTCT 60.601 57.895 3.46 0.00 0.00 3.01
684 734 4.811908 TGATGCATGACTTTTGGACATTG 58.188 39.130 2.46 0.00 0.00 2.82
807 1310 0.031857 CACAAACGGATGCTTTGCCA 59.968 50.000 8.36 0.00 32.71 4.92
816 1319 2.224018 GGATGCTTTGCCAACTCAAACA 60.224 45.455 0.00 0.00 32.99 2.83
1107 3381 3.793888 CCCCAACCCCTACCTCGC 61.794 72.222 0.00 0.00 0.00 5.03
1221 6175 6.877855 GCATAGATGGATTCTGCTTATTCTCA 59.122 38.462 0.00 0.00 35.79 3.27
1315 11360 6.830324 AGGAAAATCATATGTGCTCTGCTTTA 59.170 34.615 1.90 0.00 0.00 1.85
1431 11479 8.697507 AGATCTATTTGAAACTTCAACAACCT 57.302 30.769 4.38 0.00 45.99 3.50
1558 11651 5.730550 TCAGTTCAGTGTATGATGGTAACC 58.269 41.667 0.00 0.00 37.89 2.85
1591 11684 4.611310 TGATGTCCTAACGAGTAACGAG 57.389 45.455 0.00 0.00 45.77 4.18
1648 11757 6.045318 GCTCATCTTGCTAACTCATGTTCTA 58.955 40.000 0.00 0.00 37.59 2.10
1686 11800 3.832527 ACCTTGTTTCACATGCCTAACT 58.167 40.909 0.00 0.00 0.00 2.24
1896 15727 0.238289 CCACTTGTCGTCATTGGTGC 59.762 55.000 3.56 0.00 0.00 5.01
1952 15789 1.541118 TGCTCCTCCACCCCAATCA 60.541 57.895 0.00 0.00 0.00 2.57
1994 15837 3.449018 ACTCTCTCGCATAACTGTTGGAT 59.551 43.478 2.69 0.00 0.00 3.41
2053 15899 2.415010 CCACCTCATCCTCTCGCG 59.585 66.667 0.00 0.00 0.00 5.87
2092 15938 2.746362 GACCTCAGAAGCATGACCTTTG 59.254 50.000 0.00 0.00 0.00 2.77
2157 16003 6.660800 TGGGTTCCATATTGTTAATCCGTTA 58.339 36.000 0.00 0.00 0.00 3.18
2223 16069 3.055602 TCACTTGCATCAGCTATGTCACT 60.056 43.478 0.00 0.00 42.74 3.41
2265 16111 3.005554 CACTGATTCGCATCTCCTTGTT 58.994 45.455 0.00 0.00 0.00 2.83
2477 16330 3.370061 GTGTTCGAGGAAGATAAAACCGG 59.630 47.826 0.00 0.00 0.00 5.28
2564 17730 1.831652 CTTGTGGAGGCGGGAAGACT 61.832 60.000 0.00 0.00 44.42 3.24
2769 17950 7.867921 ACCACATATACTTCCCAAGTTATCAA 58.132 34.615 0.00 0.00 42.81 2.57
2784 17965 8.143835 CCAAGTTATCAATCTGAAAAACCTTGT 58.856 33.333 0.00 0.00 30.93 3.16
2912 18101 0.999406 CTTGTTACGTCCTGCGATGG 59.001 55.000 0.00 0.00 44.77 3.51
2918 18107 1.112113 ACGTCCTGCGATGGTCTTAT 58.888 50.000 0.00 0.00 44.77 1.73
2924 18113 1.961277 GCGATGGTCTTATGGCCGG 60.961 63.158 0.00 0.00 0.00 6.13
2966 18211 1.281867 TCTGATACAGCTTTGGTGGGG 59.718 52.381 1.90 0.00 35.13 4.96
3005 18255 6.756157 GCAGTCGCAGGATGAGTAGTTCAT 62.756 50.000 0.00 0.00 43.09 2.57
3017 18274 6.706055 TGAGTAGTTCATTGAATGTTCGTC 57.294 37.500 4.93 0.00 0.00 4.20
3174 18433 1.638070 TGGGCACTTGATAACATGGGA 59.362 47.619 0.00 0.00 0.00 4.37
3477 18812 4.385825 ACAAAAACTAGGCAGACATCGAA 58.614 39.130 0.00 0.00 0.00 3.71
3547 18882 5.228635 GCGTGCATTTGATTATCTCTGTTTG 59.771 40.000 0.00 0.00 0.00 2.93
3583 18918 6.525629 AGCTACAAATAGATGTATGGACCAC 58.474 40.000 0.00 0.00 35.37 4.16
3613 18948 8.078060 AGCACATAACTAAAATAAAAGCCCAT 57.922 30.769 0.00 0.00 0.00 4.00
3686 19035 6.485171 ACCCAAGAAGCTAGTATTGTTTCAT 58.515 36.000 0.00 0.00 0.00 2.57
3780 19129 2.035066 CACAAGTTTTGCCTCCAGGAAG 59.965 50.000 0.00 0.00 37.39 3.46
3851 19200 2.388310 AAGGAGCGGAAACTAGAAGC 57.612 50.000 0.00 0.00 0.00 3.86
3900 19258 2.033299 CAGCCAACGACAACAAGACAAT 59.967 45.455 0.00 0.00 0.00 2.71
3905 19263 1.668751 ACGACAACAAGACAATTGCGT 59.331 42.857 5.05 0.61 35.36 5.24
3919 19277 2.949106 GCGTGCTGCAATGACACT 59.051 55.556 2.77 0.00 45.45 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.673168 GTCATGCTCATCCCAGAACC 58.327 55.000 0.00 0.00 0.00 3.62
59 60 2.164865 CTGCGCTAGGCTAGGATGGG 62.165 65.000 22.40 7.36 44.05 4.00
91 92 2.426023 GCTTGGAGGACACCGTGT 59.574 61.111 3.13 3.13 0.00 4.49
95 96 2.671682 GAGGGCTTGGAGGACACC 59.328 66.667 0.00 0.00 0.00 4.16
122 123 0.037232 GCTCAGTCGTGCCCTAAAGT 60.037 55.000 0.00 0.00 0.00 2.66
144 145 2.482374 GGTGACAAGAGCGCATGC 59.518 61.111 11.47 7.91 43.24 4.06
155 156 3.494254 GTGGTGGTGGGGGTGACA 61.494 66.667 0.00 0.00 0.00 3.58
157 158 4.845307 TGGTGGTGGTGGGGGTGA 62.845 66.667 0.00 0.00 0.00 4.02
178 179 2.222678 CGACCATCATGAGCTAATGTGC 59.777 50.000 11.02 0.00 0.00 4.57
188 189 0.394192 GCCATCCTCGACCATCATGA 59.606 55.000 0.00 0.00 0.00 3.07
194 195 3.147595 CCTCGCCATCCTCGACCA 61.148 66.667 0.00 0.00 32.08 4.02
207 208 3.368190 CTCACCCAGCTGCTCCTCG 62.368 68.421 8.66 0.00 0.00 4.63
208 209 2.583520 CTCACCCAGCTGCTCCTC 59.416 66.667 8.66 0.00 0.00 3.71
237 238 4.021456 TCTCAAACTTCATCGCTAAGTCCA 60.021 41.667 0.00 0.00 36.17 4.02
343 344 2.030562 CACTTGGGTTCCGCGTCT 59.969 61.111 4.92 0.00 0.00 4.18
369 370 2.776526 AGGACTGGCCCACCACAA 60.777 61.111 0.00 0.00 42.67 3.33
370 371 3.569210 CAGGACTGGCCCACCACA 61.569 66.667 0.00 0.00 42.67 4.17
559 585 0.467384 ATCTTCCTCATCCACGCTGG 59.533 55.000 0.00 0.00 39.43 4.85
565 591 0.182061 GCTGCCATCTTCCTCATCCA 59.818 55.000 0.00 0.00 0.00 3.41
600 626 1.596934 GCCGTCTTCACTCCATGGA 59.403 57.895 15.27 15.27 0.00 3.41
749 1231 3.700038 ACCCGTCACATTTGGTAAAAACA 59.300 39.130 0.00 0.00 0.00 2.83
785 1278 1.769733 CAAAGCATCCGTTTGTGGTG 58.230 50.000 0.00 0.00 31.44 4.17
807 1310 2.693591 TCGGAGTCTGTCTGTTTGAGTT 59.306 45.455 0.00 0.00 32.66 3.01
816 1319 1.603172 CGCTTTGTTCGGAGTCTGTCT 60.603 52.381 0.00 0.00 0.00 3.41
981 3249 4.451150 TGCGCCGCCGATTCTTCT 62.451 61.111 6.63 0.00 36.29 2.85
1107 3381 0.613777 AAAGAAGGAGGCGTACAGGG 59.386 55.000 0.00 0.00 0.00 4.45
1221 6175 7.941238 TCTCAATCTGGATTGTTCTTCTTCTTT 59.059 33.333 18.86 0.00 46.15 2.52
1230 6184 5.124617 GGGAAAGTCTCAATCTGGATTGTTC 59.875 44.000 18.86 14.89 46.15 3.18
1315 11360 7.576236 CGAGTGTTGATACTGACTGAAAAATT 58.424 34.615 0.00 0.00 0.00 1.82
1339 11384 6.504398 TCTCAAACTAATACTGTATCTGGCG 58.496 40.000 0.00 0.00 0.00 5.69
1369 11414 2.300723 ACACACCACAATCGCCTAGTAA 59.699 45.455 0.00 0.00 0.00 2.24
1370 11415 1.897133 ACACACCACAATCGCCTAGTA 59.103 47.619 0.00 0.00 0.00 1.82
1371 11416 0.685097 ACACACCACAATCGCCTAGT 59.315 50.000 0.00 0.00 0.00 2.57
1372 11417 2.665649 TACACACCACAATCGCCTAG 57.334 50.000 0.00 0.00 0.00 3.02
1462 11510 3.159213 TCAACAATGATGAAGGCAGGT 57.841 42.857 0.00 0.00 0.00 4.00
1464 11512 5.578005 AAGATCAACAATGATGAAGGCAG 57.422 39.130 0.00 0.00 46.30 4.85
1558 11651 1.135373 AGGACATCAACGCGACACTAG 60.135 52.381 15.93 0.00 0.00 2.57
1591 11684 2.774439 AAAAACATGACTGGTGCGTC 57.226 45.000 0.00 0.00 34.52 5.19
1896 15727 0.179153 TGTGCGCTGAGAAGAGATCG 60.179 55.000 9.73 0.00 0.00 3.69
1994 15837 5.015515 TCCATGTGCATTTGTGGAATAAGA 58.984 37.500 9.11 0.00 37.78 2.10
2053 15899 4.207955 AGGTCACTCAAGGAAAGAAAACC 58.792 43.478 0.00 0.00 0.00 3.27
2092 15938 1.521681 GACCATGGGAGTAGCGCAC 60.522 63.158 18.09 5.97 42.69 5.34
2157 16003 1.202891 GGACCAACCTTAGTGCCACTT 60.203 52.381 1.02 0.00 35.41 3.16
2223 16069 1.892474 GATGCAACAGGGGCAGTTAAA 59.108 47.619 0.00 0.00 45.68 1.52
2265 16111 0.618680 ACAGATAGGCTCCAGCACCA 60.619 55.000 0.03 0.00 44.36 4.17
2477 16330 6.851222 TTTCATTTGCCGAATAGAGATCTC 57.149 37.500 15.29 15.29 0.00 2.75
2769 17950 2.694628 TGCAGCACAAGGTTTTTCAGAT 59.305 40.909 0.00 0.00 0.00 2.90
2784 17965 3.556817 CCATAGTTGGACTGCAGCA 57.443 52.632 15.27 0.93 46.92 4.41
2811 17993 3.106672 GAGCTGTGTCGAACGGTAATAG 58.893 50.000 0.00 0.00 37.49 1.73
2912 18101 1.523938 GCACTCCCGGCCATAAGAC 60.524 63.158 2.24 0.00 0.00 3.01
2924 18113 1.599542 GCTAATCATCAACCGCACTCC 59.400 52.381 0.00 0.00 0.00 3.85
2966 18211 3.063997 CGACTGCAACATTGTAGAATCCC 59.936 47.826 15.48 0.70 42.54 3.85
3005 18255 4.551990 GCAAGTTTCGAGACGAACATTCAA 60.552 41.667 6.09 0.00 45.64 2.69
3017 18274 5.747565 TCTGTTTGTAATGCAAGTTTCGAG 58.252 37.500 0.00 0.00 38.47 4.04
3174 18433 3.850173 TGAAAGGGAAGTTACAGGCCTAT 59.150 43.478 3.98 0.00 0.00 2.57
3238 18527 3.564235 GCTCAAGCACATCACATGAAA 57.436 42.857 0.00 0.00 41.59 2.69
3312 18603 5.468072 GTGACCTTGCAACTCTCCATATATG 59.532 44.000 5.68 5.68 0.00 1.78
3313 18604 5.455326 GGTGACCTTGCAACTCTCCATATAT 60.455 44.000 12.59 0.00 0.00 0.86
3314 18605 4.141711 GGTGACCTTGCAACTCTCCATATA 60.142 45.833 12.59 0.00 0.00 0.86
3315 18606 3.370953 GGTGACCTTGCAACTCTCCATAT 60.371 47.826 12.59 0.00 0.00 1.78
3316 18607 2.027192 GGTGACCTTGCAACTCTCCATA 60.027 50.000 12.59 0.00 0.00 2.74
3317 18608 1.271597 GGTGACCTTGCAACTCTCCAT 60.272 52.381 12.59 0.00 0.00 3.41
3477 18812 5.534207 TCAAATGCAGATCTGTTTGGTTT 57.466 34.783 26.32 16.93 33.55 3.27
3547 18882 6.821388 TCTATTTGTAGCTTGATCTCCTTCC 58.179 40.000 0.00 0.00 0.00 3.46
3613 18948 0.250814 TGCACCATGTCAGATGTGCA 60.251 50.000 17.66 17.66 44.11 4.57
3661 18998 5.938125 TGAAACAATACTAGCTTCTTGGGTC 59.062 40.000 0.00 0.00 0.00 4.46
3686 19035 2.886523 CAAGAGACAAGGGTTTGCATCA 59.113 45.455 0.00 0.00 37.85 3.07
3724 19073 6.621316 TGTTTTCGCTGAACCTTGTTATTA 57.379 33.333 0.00 0.00 0.00 0.98
3726 19075 4.556699 GCTGTTTTCGCTGAACCTTGTTAT 60.557 41.667 0.00 0.00 0.00 1.89
3780 19129 0.466555 TGTTTGCCACCCAGTGTACC 60.467 55.000 0.00 0.00 0.00 3.34
3905 19263 3.615224 TGAGATAGTGTCATTGCAGCA 57.385 42.857 0.00 0.00 0.00 4.41
3919 19277 4.454678 CTTTGCAGCTTGGGTATGAGATA 58.545 43.478 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.