Multiple sequence alignment - TraesCS4A01G452800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G452800 chr4A 100.000 6747 0 0 987 7733 717749777 717756523 0.000000e+00 12460.0
1 TraesCS4A01G452800 chr4A 94.882 5705 251 15 987 6670 717263742 717258058 0.000000e+00 8879.0
2 TraesCS4A01G452800 chr4A 94.992 3235 152 5 3432 6664 717803039 717806265 0.000000e+00 5068.0
3 TraesCS4A01G452800 chr4A 96.664 3028 84 6 3405 6430 717287668 717284656 0.000000e+00 5016.0
4 TraesCS4A01G452800 chr4A 97.456 2476 61 2 3955 6430 717225661 717223188 0.000000e+00 4222.0
5 TraesCS4A01G452800 chr4A 93.950 2463 121 10 987 3433 717800485 717802935 0.000000e+00 3698.0
6 TraesCS4A01G452800 chr4A 96.650 2000 49 5 987 2971 717236746 717234750 0.000000e+00 3306.0
7 TraesCS4A01G452800 chr4A 100.000 594 0 0 1 594 717748791 717749384 0.000000e+00 1098.0
8 TraesCS4A01G452800 chr4A 96.627 593 10 2 6664 7255 717222810 717222227 0.000000e+00 976.0
9 TraesCS4A01G452800 chr4A 95.791 594 25 0 1 594 717289017 717288424 0.000000e+00 959.0
10 TraesCS4A01G452800 chr4A 94.108 594 35 0 1 594 717264436 717263843 0.000000e+00 904.0
11 TraesCS4A01G452800 chr4A 92.424 594 44 1 1 594 717799791 717800383 0.000000e+00 846.0
12 TraesCS4A01G452800 chr4A 94.499 509 27 1 84 592 717237358 717236851 0.000000e+00 784.0
13 TraesCS4A01G452800 chr4A 99.061 426 4 0 7308 7733 717283911 717283486 0.000000e+00 765.0
14 TraesCS4A01G452800 chr4A 98.826 426 5 0 7308 7733 717222225 717221800 0.000000e+00 760.0
15 TraesCS4A01G452800 chr4A 97.653 426 10 0 7308 7733 717257402 717256977 0.000000e+00 732.0
16 TraesCS4A01G452800 chr4A 96.970 429 13 0 7305 7733 717806896 717807324 0.000000e+00 721.0
17 TraesCS4A01G452800 chr4A 96.029 277 8 1 6979 7255 717284186 717283913 1.530000e-121 448.0
18 TraesCS4A01G452800 chr4A 97.647 255 6 0 6416 6670 717284644 717284390 9.210000e-119 438.0
19 TraesCS4A01G452800 chr4A 93.174 293 12 3 6963 7255 717806613 717806897 2.580000e-114 424.0
20 TraesCS4A01G452800 chr4A 96.471 255 9 0 6416 6670 717223176 717222922 9.280000e-114 422.0
21 TraesCS4A01G452800 chr4A 90.444 293 8 4 6963 7255 717257676 717257404 1.230000e-97 368.0
22 TraesCS4A01G452800 chr4A 97.857 140 3 0 6664 6803 717806377 717806516 7.750000e-60 243.0
23 TraesCS4A01G452800 chr4A 96.226 106 4 0 6845 6950 717806523 717806628 2.870000e-39 174.0
24 TraesCS4A01G452800 chr4A 96.739 92 3 0 6664 6755 717284278 717284187 3.740000e-33 154.0
25 TraesCS4A01G452800 chr4A 97.297 37 1 0 1109 1145 717236700 717236664 6.480000e-06 63.9
26 TraesCS4A01G452800 chr4A 97.297 37 1 0 1109 1145 717749822 717749858 6.480000e-06 63.9
27 TraesCS4A01G452800 chr4A 97.297 37 1 0 1032 1068 717749899 717749935 6.480000e-06 63.9
28 TraesCS4A01G452800 chr4A 94.595 37 2 0 1032 1068 717236623 717236587 3.010000e-04 58.4
29 TraesCS4A01G452800 chr4A 100.000 29 0 0 7282 7310 717222276 717222248 4.000000e-03 54.7
30 TraesCS4A01G452800 chr4A 100.000 29 0 0 7282 7310 717257453 717257425 4.000000e-03 54.7
31 TraesCS4A01G452800 chr4A 100.000 29 0 0 7282 7310 717283962 717283934 4.000000e-03 54.7
32 TraesCS4A01G452800 chr4A 100.000 29 0 0 7282 7310 717755996 717756024 4.000000e-03 54.7
33 TraesCS4A01G452800 chr7D 95.317 5701 239 14 987 6670 16763948 16758259 0.000000e+00 9023.0
34 TraesCS4A01G452800 chr7D 94.201 5535 289 17 1153 6664 17118831 17124356 0.000000e+00 8414.0
35 TraesCS4A01G452800 chr7D 93.578 3566 203 12 1153 4700 16992268 16995825 0.000000e+00 5293.0
36 TraesCS4A01G452800 chr7D 89.531 554 49 3 1 545 17117404 17117957 0.000000e+00 693.0
37 TraesCS4A01G452800 chr7D 93.578 436 21 2 7305 7733 16996514 16996949 1.820000e-180 643.0
38 TraesCS4A01G452800 chr7D 94.444 288 12 3 6664 6950 16758147 16757863 2.560000e-119 440.0
39 TraesCS4A01G452800 chr7D 93.220 295 11 3 6963 7256 16757878 16757592 7.170000e-115 425.0
40 TraesCS4A01G452800 chr7D 92.177 294 15 3 6963 7256 16996231 16996516 7.220000e-110 409.0
41 TraesCS4A01G452800 chr7D 93.156 263 16 2 6664 6925 17124474 17124735 1.220000e-102 385.0
42 TraesCS4A01G452800 chr7D 91.603 262 15 1 6995 7256 17124737 17124991 9.540000e-94 355.0
43 TraesCS4A01G452800 chr7D 93.865 163 7 2 6664 6826 16995997 16996156 7.750000e-60 243.0
44 TraesCS4A01G452800 chr7D 97.297 37 1 0 1109 1145 16763903 16763867 6.480000e-06 63.9
45 TraesCS4A01G452800 chr7A 93.510 5532 313 20 1153 6664 16423898 16429403 0.000000e+00 8185.0
46 TraesCS4A01G452800 chr7A 93.385 5306 305 20 1153 6439 16311798 16317076 0.000000e+00 7812.0
47 TraesCS4A01G452800 chr7A 92.876 3832 213 24 1153 4954 16378724 16382525 0.000000e+00 5509.0
48 TraesCS4A01G452800 chr7A 93.353 2317 142 10 4357 6664 15822539 15820226 0.000000e+00 3415.0
49 TraesCS4A01G452800 chr7A 88.966 580 54 7 6680 7256 15820125 15819553 0.000000e+00 708.0
50 TraesCS4A01G452800 chr7A 89.781 548 48 4 1 544 15837435 15836892 0.000000e+00 695.0
51 TraesCS4A01G452800 chr7A 89.711 554 42 10 6409 6950 16317076 16317626 0.000000e+00 693.0
52 TraesCS4A01G452800 chr7A 89.636 550 50 4 1 545 16422688 16423235 0.000000e+00 693.0
53 TraesCS4A01G452800 chr7A 89.455 550 52 4 1 545 16310337 16310885 0.000000e+00 689.0
54 TraesCS4A01G452800 chr7A 95.714 420 18 0 7314 7733 16322918 16323337 0.000000e+00 676.0
55 TraesCS4A01G452800 chr7A 95.714 420 18 0 7314 7733 16435054 16435473 0.000000e+00 676.0
56 TraesCS4A01G452800 chr7A 95.782 403 17 0 7309 7711 16430054 16430456 0.000000e+00 651.0
57 TraesCS4A01G452800 chr7A 93.939 429 25 1 7305 7733 16394366 16394793 0.000000e+00 647.0
58 TraesCS4A01G452800 chr7A 92.808 292 19 2 6963 7254 16429761 16430050 9.280000e-114 422.0
59 TraesCS4A01G452800 chr7A 93.056 288 15 2 6664 6950 16393815 16394098 4.320000e-112 416.0
60 TraesCS4A01G452800 chr7A 92.517 294 14 2 6963 7256 16317611 16317896 1.550000e-111 414.0
61 TraesCS4A01G452800 chr7A 91.156 294 18 5 6963 7256 16394083 16394368 7.270000e-105 392.0
62 TraesCS4A01G452800 chr7A 95.385 195 8 1 6757 6950 16429582 16429776 7.540000e-80 309.0
63 TraesCS4A01G452800 chr7B 91.888 3649 238 24 1153 4770 655805499 655809120 0.000000e+00 5046.0
64 TraesCS4A01G452800 chr7B 89.982 549 50 4 1 545 655706630 655707177 0.000000e+00 704.0
65 TraesCS4A01G452800 chr7B 87.648 591 42 15 6664 7253 655813511 655814071 0.000000e+00 658.0
66 TraesCS4A01G452800 chr7B 92.627 434 24 2 7306 7733 655814073 655814504 1.100000e-172 617.0
67 TraesCS4A01G452800 chr7B 94.000 50 3 0 542 591 655750110 655750159 8.320000e-10 76.8
68 TraesCS4A01G452800 chr7B 90.566 53 5 0 542 594 655805227 655805279 3.870000e-08 71.3
69 TraesCS4A01G452800 chr7B 100.000 34 0 0 1109 1142 655805412 655805445 6.480000e-06 63.9
70 TraesCS4A01G452800 chr7B 100.000 32 0 0 1111 1142 655663233 655663264 8.380000e-05 60.2
71 TraesCS4A01G452800 chr7B 97.059 34 1 0 547 580 655707575 655707608 3.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G452800 chr4A 717748791 717756523 7732 False 6779.000000 12460 100.000000 1 7733 2 chr4A.!!$F2 7732
1 TraesCS4A01G452800 chr4A 717256977 717264436 7459 True 2187.540000 8879 95.417400 1 7733 5 chr4A.!!$R3 7732
2 TraesCS4A01G452800 chr4A 717799791 717807324 7533 False 1596.285714 5068 95.084714 1 7733 7 chr4A.!!$F4 7732
3 TraesCS4A01G452800 chr4A 717221800 717225661 3861 True 1286.940000 4222 97.876000 3955 7733 5 chr4A.!!$R1 3778
4 TraesCS4A01G452800 chr4A 717283486 717289017 5531 True 1119.242857 5016 97.418714 1 7733 7 chr4A.!!$R4 7732
5 TraesCS4A01G452800 chr4A 717234750 717237358 2608 True 1053.075000 3306 95.760250 84 2971 4 chr4A.!!$R2 2887
6 TraesCS4A01G452800 chr7D 16757592 16763948 6356 True 2487.975000 9023 95.069500 987 7256 4 chr7D.!!$R1 6269
7 TraesCS4A01G452800 chr7D 17117404 17124991 7587 False 2461.750000 8414 92.122750 1 7256 4 chr7D.!!$F2 7255
8 TraesCS4A01G452800 chr7D 16992268 16996949 4681 False 1647.000000 5293 93.299500 1153 7733 4 chr7D.!!$F1 6580
9 TraesCS4A01G452800 chr7A 16378724 16382525 3801 False 5509.000000 5509 92.876000 1153 4954 1 chr7A.!!$F2 3801
10 TraesCS4A01G452800 chr7A 16310337 16317896 7559 False 2402.000000 7812 91.267000 1 7256 4 chr7A.!!$F4 7255
11 TraesCS4A01G452800 chr7A 15819553 15822539 2986 True 2061.500000 3415 91.159500 4357 7256 2 chr7A.!!$R2 2899
12 TraesCS4A01G452800 chr7A 16422688 16430456 7768 False 2052.000000 8185 93.424200 1 7711 5 chr7A.!!$F6 7710
13 TraesCS4A01G452800 chr7A 15836892 15837435 543 True 695.000000 695 89.781000 1 544 1 chr7A.!!$R1 543
14 TraesCS4A01G452800 chr7A 16393815 16394793 978 False 485.000000 647 92.717000 6664 7733 3 chr7A.!!$F5 1069
15 TraesCS4A01G452800 chr7B 655805227 655809120 3893 False 1727.066667 5046 94.151333 542 4770 3 chr7B.!!$F4 4228
16 TraesCS4A01G452800 chr7B 655813511 655814504 993 False 637.500000 658 90.137500 6664 7733 2 chr7B.!!$F5 1069
17 TraesCS4A01G452800 chr7B 655706630 655707608 978 False 381.200000 704 93.520500 1 580 2 chr7B.!!$F3 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 412 0.593128 GCGAGCAAACTGACCAACAT 59.407 50.000 0.00 0.0 0.00 2.71 F
1502 2311 1.357137 TGGGACACTAGCCAACATCA 58.643 50.000 0.00 0.0 0.00 3.07 F
3019 3855 0.901114 TTGCTACGCACCTGGGTCTA 60.901 55.000 0.00 0.0 38.71 2.59 F
3871 4839 0.108585 AGGTGTCGCCACAAACTCAT 59.891 50.000 4.97 0.0 43.71 2.90 F
3913 4881 1.898472 CCATGCATTTACCCAACACCA 59.102 47.619 0.00 0.0 0.00 4.17 F
5473 6470 0.034616 GACCAGACAAGCTCAGCTGT 59.965 55.000 14.67 0.0 39.62 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 3156 1.285950 GGTTCAAGCGCTTCCCAAC 59.714 57.895 22.21 21.12 0.00 3.77 R
3274 4113 0.107993 ATGAGACGATGTGTGGCAGG 60.108 55.000 0.00 0.00 0.00 4.85 R
4119 5088 0.478072 TTCCCTTGCTGAGGCTGAAA 59.522 50.000 0.00 0.00 44.85 2.69 R
4846 5835 1.966901 ATTCCGGGCGCACAGATACA 61.967 55.000 11.77 0.00 0.00 2.29 R
5622 6619 3.261580 CAGTGAGCACGTCCATAATGAA 58.738 45.455 0.00 0.00 36.20 2.57 R
6993 8264 0.824759 CGCTAGGCCTGTAACTTCCT 59.175 55.000 17.99 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.867166 TCGGCAACAACGACACATAA 58.133 45.000 0.00 0.00 35.12 1.90
166 168 5.445964 AGAATAAAAATATGGGCGGACAGT 58.554 37.500 0.00 0.00 0.00 3.55
203 205 3.353557 AGAACATAGAGTACCTCACGCA 58.646 45.455 0.00 0.00 32.06 5.24
317 319 2.047274 CCGGTCGGAGCATGTTGT 60.047 61.111 2.83 0.00 37.50 3.32
401 412 0.593128 GCGAGCAAACTGACCAACAT 59.407 50.000 0.00 0.00 0.00 2.71
510 521 1.671379 GGACGGGAGGTCTTGTTGC 60.671 63.158 0.00 0.00 45.35 4.17
1026 1830 2.412323 CGCGTGGGCTCCTACTGTA 61.412 63.158 0.00 0.00 36.88 2.74
1266 2070 2.250939 TTGTTGCCTCCACTTCGCG 61.251 57.895 0.00 0.00 0.00 5.87
1316 2122 3.377485 GGGAAGAACTCGCCCTATTTTTC 59.623 47.826 0.00 0.00 38.85 2.29
1438 2244 2.624838 CAATCATTAGACATGGGGGCAC 59.375 50.000 0.00 0.00 0.00 5.01
1502 2311 1.357137 TGGGACACTAGCCAACATCA 58.643 50.000 0.00 0.00 0.00 3.07
1562 2371 9.019656 ACATTGTTACCAGAAATAGCACAAATA 57.980 29.630 0.00 0.00 0.00 1.40
1584 2393 2.157085 GTGTTACACTCAGCGCCTTTAC 59.843 50.000 8.41 0.00 0.00 2.01
1643 2452 2.445525 ACCTCCAGCCAAAGACCTTAAA 59.554 45.455 0.00 0.00 0.00 1.52
1665 2474 6.943899 AACTTCTCTGGAACCTTATCTCTT 57.056 37.500 0.00 0.00 0.00 2.85
1754 2566 2.768527 TGAATTTGAGTTGGGTGGCAAA 59.231 40.909 0.00 0.00 35.07 3.68
1817 2630 6.596309 TGCGAAATATCTCCTCTACATCAT 57.404 37.500 0.00 0.00 0.00 2.45
1820 2633 8.029522 TGCGAAATATCTCCTCTACATCATAAC 58.970 37.037 0.00 0.00 0.00 1.89
1954 2770 3.051081 ACTGTCTCAGAATCCAGTTGC 57.949 47.619 3.70 0.00 34.64 4.17
1976 2792 6.005823 TGCCTCTCTGAATCTGAATTTTTCA 58.994 36.000 0.00 0.00 38.17 2.69
2325 3156 8.352201 TCACATTTGAACAATCCAAAGAAGTAG 58.648 33.333 0.00 0.00 37.00 2.57
2399 3232 7.410174 TGGGTCATATACTTTTCAATCCAGTT 58.590 34.615 0.00 0.00 0.00 3.16
2419 3252 5.348179 CAGTTCTTGCACATTTTTGTGAACA 59.652 36.000 10.14 0.00 42.02 3.18
2731 3566 2.305635 GGCTCCCCCAACAATTTTGATT 59.694 45.455 0.00 0.00 0.00 2.57
2743 3578 7.040548 CCAACAATTTTGATTGGCATTAACCTT 60.041 33.333 9.91 0.00 34.80 3.50
2765 3600 2.555757 CCTTCCAAGACCTGCTTTCTTG 59.444 50.000 12.82 12.82 46.51 3.02
2881 3717 4.283212 GGACCCAAAATCTTTCATGTCCAA 59.717 41.667 0.00 0.00 40.52 3.53
2884 3720 5.781818 ACCCAAAATCTTTCATGTCCAAGAT 59.218 36.000 10.10 10.10 40.76 2.40
3006 3842 2.093783 CGGAAGGATTTCACGTTGCTAC 59.906 50.000 0.00 0.00 34.90 3.58
3019 3855 0.901114 TTGCTACGCACCTGGGTCTA 60.901 55.000 0.00 0.00 38.71 2.59
3063 3902 4.227300 AGGAAAGTGGTTGGAGCATATGTA 59.773 41.667 4.29 0.00 0.00 2.29
3064 3903 4.576463 GGAAAGTGGTTGGAGCATATGTAG 59.424 45.833 4.29 0.00 0.00 2.74
3217 4056 7.834068 TTATGAAGATCACACTAGAACAAGC 57.166 36.000 0.00 0.00 0.00 4.01
3238 4077 6.765915 AGCCTTCTCTGAAATTGGTATTTC 57.234 37.500 0.00 0.00 46.42 2.17
3279 4118 3.077617 GAGAAGTGCTCATCCTGCC 57.922 57.895 0.00 0.00 43.38 4.85
3280 4119 0.251354 GAGAAGTGCTCATCCTGCCA 59.749 55.000 0.00 0.00 43.38 4.92
3450 4395 7.770801 TGAATTAAGACATTGATGTACCTCG 57.229 36.000 0.00 0.00 41.95 4.63
3554 4502 3.554342 CTGGCGGCCTAGCATCCT 61.554 66.667 21.46 0.00 39.27 3.24
3763 4719 1.136828 AACCAATGGGCCGATAGCTA 58.863 50.000 3.55 0.00 43.05 3.32
3819 4775 1.486726 CCTCCATTACCCTCACCTCAC 59.513 57.143 0.00 0.00 0.00 3.51
3871 4839 0.108585 AGGTGTCGCCACAAACTCAT 59.891 50.000 4.97 0.00 43.71 2.90
3913 4881 1.898472 CCATGCATTTACCCAACACCA 59.102 47.619 0.00 0.00 0.00 4.17
4025 4994 2.542541 TCCAGGGGTAGGGGAGGT 60.543 66.667 0.00 0.00 0.00 3.85
4073 5042 3.153369 TCATTTTCCTTGCTGGCTGTA 57.847 42.857 0.00 0.00 35.26 2.74
4129 5099 2.592993 CCCTCCGGTTTCAGCCTCA 61.593 63.158 0.00 0.00 0.00 3.86
4216 5192 2.799126 TTGGAGTGATTGCCGGTATT 57.201 45.000 1.90 0.00 0.00 1.89
4272 5248 2.170166 GGAACCCATGACAGCAATTGA 58.830 47.619 10.34 0.00 0.00 2.57
4332 5308 8.503458 TTGATTGTTTTGTTTGGAACATGATT 57.497 26.923 0.00 0.00 41.79 2.57
4846 5835 8.417780 TTTCAAATGTTGATGAAATTTGTCGT 57.582 26.923 0.00 0.00 39.81 4.34
4856 5845 5.029650 TGAAATTTGTCGTGTATCTGTGC 57.970 39.130 0.00 0.00 0.00 4.57
5473 6470 0.034616 GACCAGACAAGCTCAGCTGT 59.965 55.000 14.67 0.00 39.62 4.40
5559 6556 4.662278 CTTGACCCCTCCAAGTATTTTGA 58.338 43.478 0.00 0.00 36.99 2.69
5610 6607 2.677836 GGTCATGCGATTTTCTGCTACA 59.322 45.455 0.00 0.00 0.00 2.74
5621 6618 4.744795 TTTCTGCTACAAGAGATCCCTC 57.255 45.455 0.00 0.00 39.72 4.30
5677 6674 2.229784 CAGCTCCACCTTTTCCATTGAC 59.770 50.000 0.00 0.00 0.00 3.18
6009 7007 1.176527 CCTACTTGGTCGTAACGGGA 58.823 55.000 0.00 0.00 0.00 5.14
6153 7151 5.819901 GTGAATCCAGAGAGAATGGGTTTAG 59.180 44.000 0.00 0.00 41.31 1.85
6173 7171 0.623723 GGGGTGGCCTTGTCTATCAA 59.376 55.000 3.32 0.00 34.61 2.57
6363 7362 1.607467 GTTGGCTGCACTTGGGGAT 60.607 57.895 0.50 0.00 0.00 3.85
6557 7645 6.610075 AGGGTTTGCATCTTGAAACAATAT 57.390 33.333 0.00 0.00 34.36 1.28
6611 7700 2.200792 TTTTTGTGTGCACCATGTCG 57.799 45.000 15.69 0.00 0.00 4.35
6664 7754 4.218200 TGCTTTGTTTGGTCCATACATCTG 59.782 41.667 14.95 9.68 0.00 2.90
6667 7757 5.703978 TTGTTTGGTCCATACATCTGTTG 57.296 39.130 14.95 0.00 0.00 3.33
6725 7933 4.946772 TGCTGCTTATATGTTTGTTGGCTA 59.053 37.500 0.00 0.00 0.00 3.93
6905 8122 4.802999 TGAGATAGTCATATGCTCAAGCG 58.197 43.478 7.32 0.00 45.83 4.68
6950 8221 9.601217 CAACCATAGTACAATTACTCTTAGCTT 57.399 33.333 0.00 0.00 39.43 3.74
6986 8257 8.573035 AGACAAGTTACTCTTAGCTATCTATGC 58.427 37.037 0.00 0.00 34.66 3.14
7012 8283 0.824759 AGGAAGTTACAGGCCTAGCG 59.175 55.000 3.98 0.00 0.00 4.26
7256 8537 4.963237 GCTGTATCAGAAGCTAATCACG 57.037 45.455 0.66 0.00 36.47 4.35
7257 8538 3.738282 GCTGTATCAGAAGCTAATCACGG 59.262 47.826 0.66 0.00 36.47 4.94
7258 8539 4.737946 GCTGTATCAGAAGCTAATCACGGT 60.738 45.833 0.66 0.00 36.47 4.83
7259 8540 5.507482 GCTGTATCAGAAGCTAATCACGGTA 60.507 44.000 0.66 0.00 36.47 4.02
7260 8541 6.459670 TGTATCAGAAGCTAATCACGGTAA 57.540 37.500 0.00 0.00 0.00 2.85
7261 8542 6.270815 TGTATCAGAAGCTAATCACGGTAAC 58.729 40.000 0.00 0.00 0.00 2.50
7262 8543 4.794278 TCAGAAGCTAATCACGGTAACA 57.206 40.909 0.00 0.00 0.00 2.41
7263 8544 5.142061 TCAGAAGCTAATCACGGTAACAA 57.858 39.130 0.00 0.00 0.00 2.83
7264 8545 5.168569 TCAGAAGCTAATCACGGTAACAAG 58.831 41.667 0.00 0.00 0.00 3.16
7265 8546 4.330074 CAGAAGCTAATCACGGTAACAAGG 59.670 45.833 0.00 0.00 0.00 3.61
7266 8547 4.222145 AGAAGCTAATCACGGTAACAAGGA 59.778 41.667 0.00 0.00 0.00 3.36
7267 8548 4.546829 AGCTAATCACGGTAACAAGGAA 57.453 40.909 0.00 0.00 0.00 3.36
7268 8549 4.901868 AGCTAATCACGGTAACAAGGAAA 58.098 39.130 0.00 0.00 0.00 3.13
7269 8550 4.694037 AGCTAATCACGGTAACAAGGAAAC 59.306 41.667 0.00 0.00 0.00 2.78
7270 8551 4.453136 GCTAATCACGGTAACAAGGAAACA 59.547 41.667 0.00 0.00 0.00 2.83
7271 8552 5.123344 GCTAATCACGGTAACAAGGAAACAT 59.877 40.000 0.00 0.00 0.00 2.71
7272 8553 6.314400 GCTAATCACGGTAACAAGGAAACATA 59.686 38.462 0.00 0.00 0.00 2.29
7273 8554 6.737254 AATCACGGTAACAAGGAAACATAG 57.263 37.500 0.00 0.00 0.00 2.23
7274 8555 5.217978 TCACGGTAACAAGGAAACATAGT 57.782 39.130 0.00 0.00 0.00 2.12
7275 8556 6.343716 TCACGGTAACAAGGAAACATAGTA 57.656 37.500 0.00 0.00 0.00 1.82
7276 8557 6.392354 TCACGGTAACAAGGAAACATAGTAG 58.608 40.000 0.00 0.00 0.00 2.57
7277 8558 6.209192 TCACGGTAACAAGGAAACATAGTAGA 59.791 38.462 0.00 0.00 0.00 2.59
7278 8559 6.869913 CACGGTAACAAGGAAACATAGTAGAA 59.130 38.462 0.00 0.00 0.00 2.10
7279 8560 7.548075 CACGGTAACAAGGAAACATAGTAGAAT 59.452 37.037 0.00 0.00 0.00 2.40
7280 8561 7.763071 ACGGTAACAAGGAAACATAGTAGAATC 59.237 37.037 0.00 0.00 0.00 2.52
7281 8562 7.762615 CGGTAACAAGGAAACATAGTAGAATCA 59.237 37.037 0.00 0.00 0.00 2.57
7282 8563 8.880750 GGTAACAAGGAAACATAGTAGAATCAC 58.119 37.037 0.00 0.00 0.00 3.06
7283 8564 9.654663 GTAACAAGGAAACATAGTAGAATCACT 57.345 33.333 0.00 0.00 0.00 3.41
7284 8565 8.553459 AACAAGGAAACATAGTAGAATCACTG 57.447 34.615 0.00 0.00 0.00 3.66
7285 8566 6.595716 ACAAGGAAACATAGTAGAATCACTGC 59.404 38.462 0.00 0.00 0.00 4.40
7286 8567 6.299805 AGGAAACATAGTAGAATCACTGCA 57.700 37.500 0.00 0.00 33.69 4.41
7287 8568 6.711277 AGGAAACATAGTAGAATCACTGCAA 58.289 36.000 0.00 0.00 33.69 4.08
7288 8569 6.595716 AGGAAACATAGTAGAATCACTGCAAC 59.404 38.462 0.00 0.00 33.69 4.17
7289 8570 6.371548 GGAAACATAGTAGAATCACTGCAACA 59.628 38.462 0.00 0.00 33.69 3.33
7290 8571 7.066284 GGAAACATAGTAGAATCACTGCAACAT 59.934 37.037 0.00 0.00 33.69 2.71
7291 8572 9.098355 GAAACATAGTAGAATCACTGCAACATA 57.902 33.333 0.00 0.00 33.69 2.29
7292 8573 8.654230 AACATAGTAGAATCACTGCAACATAG 57.346 34.615 0.00 0.00 33.69 2.23
7293 8574 7.786030 ACATAGTAGAATCACTGCAACATAGT 58.214 34.615 0.00 0.00 33.69 2.12
7294 8575 8.914011 ACATAGTAGAATCACTGCAACATAGTA 58.086 33.333 0.00 0.00 33.69 1.82
7295 8576 9.404348 CATAGTAGAATCACTGCAACATAGTAG 57.596 37.037 0.00 0.00 33.69 2.57
7296 8577 7.646548 AGTAGAATCACTGCAACATAGTAGA 57.353 36.000 0.00 0.00 33.69 2.59
7297 8578 8.067751 AGTAGAATCACTGCAACATAGTAGAA 57.932 34.615 0.00 0.00 33.69 2.10
7298 8579 8.700051 AGTAGAATCACTGCAACATAGTAGAAT 58.300 33.333 0.00 0.00 33.69 2.40
7299 8580 8.973378 GTAGAATCACTGCAACATAGTAGAATC 58.027 37.037 0.00 0.00 0.00 2.52
7300 8581 6.989169 AGAATCACTGCAACATAGTAGAATCC 59.011 38.462 0.00 0.00 0.00 3.01
7301 8582 5.939764 TCACTGCAACATAGTAGAATCCT 57.060 39.130 0.00 0.00 0.00 3.24
7302 8583 5.907207 TCACTGCAACATAGTAGAATCCTC 58.093 41.667 0.00 0.00 0.00 3.71
7303 8584 5.053145 CACTGCAACATAGTAGAATCCTCC 58.947 45.833 0.00 0.00 0.00 4.30
7304 8585 4.101741 ACTGCAACATAGTAGAATCCTCCC 59.898 45.833 0.00 0.00 0.00 4.30
7305 8586 4.037222 TGCAACATAGTAGAATCCTCCCA 58.963 43.478 0.00 0.00 0.00 4.37
7306 8587 4.141711 TGCAACATAGTAGAATCCTCCCAC 60.142 45.833 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.551452 CCGACCTCTCCTCTTTGTCT 58.449 55.000 0.00 0.00 0.00 3.41
239 241 4.323792 CCAATGACCTTACCTCACTGACAT 60.324 45.833 0.00 0.00 0.00 3.06
240 242 3.007940 CCAATGACCTTACCTCACTGACA 59.992 47.826 0.00 0.00 0.00 3.58
317 319 3.616560 GCAAGGAGACGAAAGACACCATA 60.617 47.826 0.00 0.00 38.76 2.74
401 412 2.352715 CGTGTAGGATGAGAGTTGTGCA 60.353 50.000 0.00 0.00 0.00 4.57
472 483 2.159572 CCTCACGTTTAAATTGCCTCGG 60.160 50.000 0.00 0.00 0.00 4.63
475 486 2.482721 CGTCCTCACGTTTAAATTGCCT 59.517 45.455 0.00 0.00 41.42 4.75
510 521 5.922739 TTATTATGTGAGCTTGCATACCG 57.077 39.130 9.71 0.00 0.00 4.02
1026 1830 5.168679 AGGACTCCAGATATGGATGGAAAT 58.831 41.667 10.06 0.00 44.82 2.17
1073 1877 1.899814 ACTGCGGTGACTCCAAATCTA 59.100 47.619 0.00 0.00 35.57 1.98
1438 2244 6.263168 GGAATTGGTGTCCCATCAATACTTAG 59.737 42.308 3.33 0.00 43.36 2.18
1502 2311 2.233271 CAATCTCCACAGTGGCTTTGT 58.767 47.619 15.64 0.00 37.47 2.83
1643 2452 6.019748 TGAAGAGATAAGGTTCCAGAGAAGT 58.980 40.000 0.00 0.00 30.91 3.01
1665 2474 5.825532 TGGAGTATTTGGGATGTGATTTGA 58.174 37.500 0.00 0.00 0.00 2.69
1754 2566 8.621532 ATGTAATGGATGACGTGCTTATAAAT 57.378 30.769 0.00 0.00 0.00 1.40
1817 2630 6.569127 TGTCCATAGGCTATTTTCTGGTTA 57.431 37.500 3.76 0.00 0.00 2.85
1820 2633 4.823989 CCTTGTCCATAGGCTATTTTCTGG 59.176 45.833 3.76 4.47 0.00 3.86
1954 2770 7.338703 TGGATGAAAAATTCAGATTCAGAGAGG 59.661 37.037 0.00 0.00 43.98 3.69
1976 2792 4.528206 TCATCTGGCGTATAGTGAATGGAT 59.472 41.667 0.00 0.00 0.00 3.41
2325 3156 1.285950 GGTTCAAGCGCTTCCCAAC 59.714 57.895 22.21 21.12 0.00 3.77
2399 3232 6.036953 GGAAATGTTCACAAAAATGTGCAAGA 59.963 34.615 4.13 0.28 39.49 3.02
2419 3252 7.041780 CCTCGAATTTTAGTCGATCATGGAAAT 60.042 37.037 0.00 0.00 45.75 2.17
2731 3566 3.075283 TCTTGGAAGGAAGGTTAATGCCA 59.925 43.478 0.00 0.00 0.00 4.92
2743 3578 2.057922 AGAAAGCAGGTCTTGGAAGGA 58.942 47.619 0.00 0.00 34.67 3.36
2765 3600 1.587547 GATGGTCGGGAAAGCATCTC 58.412 55.000 8.41 0.00 46.00 2.75
2881 3717 4.337555 GTGCTGCAATAGGATGTTTGATCT 59.662 41.667 2.77 0.00 0.00 2.75
2884 3720 3.689347 AGTGCTGCAATAGGATGTTTGA 58.311 40.909 2.77 0.00 0.00 2.69
3006 3842 0.387202 CAGAGATAGACCCAGGTGCG 59.613 60.000 0.00 0.00 0.00 5.34
3063 3902 4.974645 TTCAGAGTGAACAATGGTACCT 57.025 40.909 14.36 0.00 30.26 3.08
3064 3903 7.681939 TTTATTCAGAGTGAACAATGGTACC 57.318 36.000 4.43 4.43 39.45 3.34
3238 4077 5.471797 TCAGTAGCTTGGATATTCGAGAGAG 59.528 44.000 1.96 0.00 43.69 3.20
3274 4113 0.107993 ATGAGACGATGTGTGGCAGG 60.108 55.000 0.00 0.00 0.00 4.85
3279 4118 6.092670 AGGTGATTTTTATGAGACGATGTGTG 59.907 38.462 0.00 0.00 0.00 3.82
3280 4119 6.173339 AGGTGATTTTTATGAGACGATGTGT 58.827 36.000 0.00 0.00 0.00 3.72
3361 4201 4.461781 CCTAAGGAGTAAGGAAGACGTCAA 59.538 45.833 19.50 0.00 34.58 3.18
3411 4251 8.000127 TGTCTTAATTCATGATGATTCCCATGA 59.000 33.333 12.17 12.17 45.03 3.07
3763 4719 0.322648 GGTGTGTTAGGCGGTAAGGT 59.677 55.000 0.00 0.00 0.00 3.50
3819 4775 1.151668 CTGGTCTGAACAAGAAGGCG 58.848 55.000 0.00 0.00 36.40 5.52
3913 4881 2.513895 CCTTGTGAACACCGGGGT 59.486 61.111 1.51 1.51 0.00 4.95
3927 4895 5.510430 GGGAAGTAAGTTGATCAATCCCTT 58.490 41.667 25.66 19.50 41.66 3.95
4073 5042 1.383803 GGCCTCCTCCATGAGTCCT 60.384 63.158 0.00 0.00 0.00 3.85
4119 5088 0.478072 TTCCCTTGCTGAGGCTGAAA 59.522 50.000 0.00 0.00 44.85 2.69
4129 5099 0.853530 ACTTGGTTCCTTCCCTTGCT 59.146 50.000 0.00 0.00 0.00 3.91
4216 5192 1.911766 GGGGAAGGTCTCGTCCACA 60.912 63.158 0.00 0.00 43.22 4.17
4267 5243 1.597797 CGGCCACTGCACCATCAATT 61.598 55.000 2.24 0.00 40.13 2.32
4302 5278 7.972527 TGTTCCAAACAAAACAATCAAGATTG 58.027 30.769 18.52 18.52 44.61 2.67
4332 5308 2.293122 GTGACATGCAAGCACCAACTAA 59.707 45.455 0.00 0.00 0.00 2.24
4842 5831 2.165301 GGGCGCACAGATACACGAC 61.165 63.158 10.83 0.00 0.00 4.34
4846 5835 1.966901 ATTCCGGGCGCACAGATACA 61.967 55.000 11.77 0.00 0.00 2.29
4856 5845 4.891727 CCACCTCGATTCCGGGCG 62.892 72.222 0.00 3.47 34.24 6.13
5473 6470 5.009631 CCCATGTGTTTCCAATGTTAGAGA 58.990 41.667 0.00 0.00 0.00 3.10
5559 6556 5.613329 ACATTTGATGACTGCCATTTTGTT 58.387 33.333 0.00 0.00 35.17 2.83
5621 6618 3.308053 CAGTGAGCACGTCCATAATGAAG 59.692 47.826 0.00 0.00 36.20 3.02
5622 6619 3.261580 CAGTGAGCACGTCCATAATGAA 58.738 45.455 0.00 0.00 36.20 2.57
5677 6674 5.724328 TGAAGGTTCTGTAGCATAGTTGAG 58.276 41.667 0.00 0.00 0.00 3.02
6009 7007 4.202503 TGAGAAGTCAATGGAGAAGGCTTT 60.203 41.667 0.00 0.00 0.00 3.51
6153 7151 1.279025 TGATAGACAAGGCCACCCCC 61.279 60.000 5.01 0.00 0.00 5.40
6173 7171 2.699954 ACTCGAGCGTTTTCATCCAAT 58.300 42.857 13.61 0.00 0.00 3.16
6434 7521 2.603075 ATGTACACTGGGTGGCAAAT 57.397 45.000 0.00 0.00 37.94 2.32
6557 7645 8.072321 AGTGATATGAAGACTCAAGAAGCTAA 57.928 34.615 0.00 0.00 34.49 3.09
6611 7700 1.780503 ATAAAAGCCCAGGCACATCC 58.219 50.000 12.03 0.00 44.88 3.51
6664 7754 8.359060 TCACAAAGTTTATATTTTGCACCAAC 57.641 30.769 0.00 0.00 37.71 3.77
6667 7757 8.755696 TCATCACAAAGTTTATATTTTGCACC 57.244 30.769 0.00 0.00 37.71 5.01
6905 8122 4.793216 GGTTGTTGATTATTCACGTGATGC 59.207 41.667 20.80 7.78 0.00 3.91
6954 8225 9.998106 ATAGCTAAGAGTAACTTGTCTCAAAAA 57.002 29.630 0.00 0.00 39.38 1.94
6955 8226 9.640963 GATAGCTAAGAGTAACTTGTCTCAAAA 57.359 33.333 0.00 0.00 39.38 2.44
6956 8227 9.026121 AGATAGCTAAGAGTAACTTGTCTCAAA 57.974 33.333 0.00 0.00 39.38 2.69
6957 8228 8.582657 AGATAGCTAAGAGTAACTTGTCTCAA 57.417 34.615 0.00 0.00 39.38 3.02
6958 8229 9.854668 ATAGATAGCTAAGAGTAACTTGTCTCA 57.145 33.333 0.00 0.00 39.38 3.27
6960 8231 8.573035 GCATAGATAGCTAAGAGTAACTTGTCT 58.427 37.037 0.00 0.00 39.38 3.41
6961 8232 8.353684 TGCATAGATAGCTAAGAGTAACTTGTC 58.646 37.037 0.00 0.00 39.38 3.18
6962 8233 8.239038 TGCATAGATAGCTAAGAGTAACTTGT 57.761 34.615 0.00 0.00 39.38 3.16
6963 8234 9.138062 CATGCATAGATAGCTAAGAGTAACTTG 57.862 37.037 0.00 0.00 39.38 3.16
6964 8235 9.083422 TCATGCATAGATAGCTAAGAGTAACTT 57.917 33.333 0.00 0.00 42.04 2.66
6965 8236 8.642935 TCATGCATAGATAGCTAAGAGTAACT 57.357 34.615 0.00 0.00 0.00 2.24
6966 8237 9.698309 TTTCATGCATAGATAGCTAAGAGTAAC 57.302 33.333 0.00 0.00 0.00 2.50
6968 8239 9.920133 CTTTTCATGCATAGATAGCTAAGAGTA 57.080 33.333 0.00 0.00 0.00 2.59
6969 8240 7.877097 CCTTTTCATGCATAGATAGCTAAGAGT 59.123 37.037 0.00 0.00 0.00 3.24
6970 8241 8.093307 TCCTTTTCATGCATAGATAGCTAAGAG 58.907 37.037 0.00 0.00 0.00 2.85
6971 8242 7.966812 TCCTTTTCATGCATAGATAGCTAAGA 58.033 34.615 0.00 0.00 0.00 2.10
6972 8243 8.613060 TTCCTTTTCATGCATAGATAGCTAAG 57.387 34.615 0.00 0.00 0.00 2.18
6973 8244 8.213679 ACTTCCTTTTCATGCATAGATAGCTAA 58.786 33.333 0.00 0.00 0.00 3.09
6974 8245 7.739825 ACTTCCTTTTCATGCATAGATAGCTA 58.260 34.615 0.00 0.00 0.00 3.32
6975 8246 6.599445 ACTTCCTTTTCATGCATAGATAGCT 58.401 36.000 0.00 0.00 0.00 3.32
6976 8247 6.874288 ACTTCCTTTTCATGCATAGATAGC 57.126 37.500 0.00 0.00 0.00 2.97
6977 8248 9.330063 TGTAACTTCCTTTTCATGCATAGATAG 57.670 33.333 0.00 0.00 0.00 2.08
6978 8249 9.330063 CTGTAACTTCCTTTTCATGCATAGATA 57.670 33.333 0.00 0.00 0.00 1.98
6986 8257 4.082125 AGGCCTGTAACTTCCTTTTCATG 58.918 43.478 3.11 0.00 0.00 3.07
6993 8264 0.824759 CGCTAGGCCTGTAACTTCCT 59.175 55.000 17.99 0.00 0.00 3.36
7012 8283 1.406539 CCTGGGCACTTGATAACATGC 59.593 52.381 0.00 0.00 37.35 4.06
7256 8537 8.880750 GTGATTCTACTATGTTTCCTTGTTACC 58.119 37.037 0.00 0.00 0.00 2.85
7257 8538 9.654663 AGTGATTCTACTATGTTTCCTTGTTAC 57.345 33.333 0.00 0.00 0.00 2.50
7258 8539 9.653287 CAGTGATTCTACTATGTTTCCTTGTTA 57.347 33.333 0.00 0.00 0.00 2.41
7259 8540 7.119846 GCAGTGATTCTACTATGTTTCCTTGTT 59.880 37.037 0.00 0.00 0.00 2.83
7260 8541 6.595716 GCAGTGATTCTACTATGTTTCCTTGT 59.404 38.462 0.00 0.00 0.00 3.16
7261 8542 6.595326 TGCAGTGATTCTACTATGTTTCCTTG 59.405 38.462 0.00 0.00 0.00 3.61
7262 8543 6.711277 TGCAGTGATTCTACTATGTTTCCTT 58.289 36.000 0.00 0.00 0.00 3.36
7263 8544 6.299805 TGCAGTGATTCTACTATGTTTCCT 57.700 37.500 0.00 0.00 0.00 3.36
7264 8545 6.371548 TGTTGCAGTGATTCTACTATGTTTCC 59.628 38.462 0.00 0.00 0.00 3.13
7265 8546 7.364522 TGTTGCAGTGATTCTACTATGTTTC 57.635 36.000 0.00 0.00 0.00 2.78
7266 8547 7.928307 ATGTTGCAGTGATTCTACTATGTTT 57.072 32.000 0.00 0.00 0.00 2.83
7267 8548 8.260818 ACTATGTTGCAGTGATTCTACTATGTT 58.739 33.333 0.00 0.00 0.00 2.71
7268 8549 7.786030 ACTATGTTGCAGTGATTCTACTATGT 58.214 34.615 0.00 0.00 0.00 2.29
7269 8550 9.404348 CTACTATGTTGCAGTGATTCTACTATG 57.596 37.037 0.00 0.00 0.00 2.23
7270 8551 9.355916 TCTACTATGTTGCAGTGATTCTACTAT 57.644 33.333 0.00 0.00 0.00 2.12
7271 8552 8.747538 TCTACTATGTTGCAGTGATTCTACTA 57.252 34.615 0.00 0.00 0.00 1.82
7272 8553 7.646548 TCTACTATGTTGCAGTGATTCTACT 57.353 36.000 0.00 0.00 0.00 2.57
7273 8554 8.879342 ATTCTACTATGTTGCAGTGATTCTAC 57.121 34.615 0.00 0.00 0.00 2.59
7274 8555 8.144478 GGATTCTACTATGTTGCAGTGATTCTA 58.856 37.037 0.00 0.00 0.00 2.10
7275 8556 6.989169 GGATTCTACTATGTTGCAGTGATTCT 59.011 38.462 0.00 0.00 0.00 2.40
7276 8557 6.989169 AGGATTCTACTATGTTGCAGTGATTC 59.011 38.462 0.00 0.00 0.00 2.52
7277 8558 6.893583 AGGATTCTACTATGTTGCAGTGATT 58.106 36.000 0.00 0.00 0.00 2.57
7278 8559 6.463614 GGAGGATTCTACTATGTTGCAGTGAT 60.464 42.308 0.00 0.00 0.00 3.06
7279 8560 5.163405 GGAGGATTCTACTATGTTGCAGTGA 60.163 44.000 0.00 0.00 0.00 3.41
7280 8561 5.053145 GGAGGATTCTACTATGTTGCAGTG 58.947 45.833 0.00 0.00 0.00 3.66
7281 8562 4.101741 GGGAGGATTCTACTATGTTGCAGT 59.898 45.833 0.00 0.00 0.00 4.40
7282 8563 4.101585 TGGGAGGATTCTACTATGTTGCAG 59.898 45.833 0.00 0.00 0.00 4.41
7283 8564 4.037222 TGGGAGGATTCTACTATGTTGCA 58.963 43.478 0.00 0.00 0.00 4.08
7284 8565 4.381411 GTGGGAGGATTCTACTATGTTGC 58.619 47.826 0.00 0.00 0.00 4.17
7285 8566 4.408921 TGGTGGGAGGATTCTACTATGTTG 59.591 45.833 0.00 0.00 0.00 3.33
7286 8567 4.631234 TGGTGGGAGGATTCTACTATGTT 58.369 43.478 0.00 0.00 0.00 2.71
7287 8568 4.280789 TGGTGGGAGGATTCTACTATGT 57.719 45.455 0.00 0.00 0.00 2.29
7288 8569 4.202367 GGTTGGTGGGAGGATTCTACTATG 60.202 50.000 0.00 0.00 0.00 2.23
7289 8570 3.974642 GGTTGGTGGGAGGATTCTACTAT 59.025 47.826 0.00 0.00 0.00 2.12
7290 8571 3.381335 GGTTGGTGGGAGGATTCTACTA 58.619 50.000 0.00 0.00 0.00 1.82
7291 8572 2.197465 GGTTGGTGGGAGGATTCTACT 58.803 52.381 0.00 0.00 0.00 2.57
7292 8573 1.134491 CGGTTGGTGGGAGGATTCTAC 60.134 57.143 0.00 0.00 0.00 2.59
7293 8574 1.200519 CGGTTGGTGGGAGGATTCTA 58.799 55.000 0.00 0.00 0.00 2.10
7294 8575 1.991230 CGGTTGGTGGGAGGATTCT 59.009 57.895 0.00 0.00 0.00 2.40
7295 8576 1.749258 GCGGTTGGTGGGAGGATTC 60.749 63.158 0.00 0.00 0.00 2.52
7296 8577 2.355115 GCGGTTGGTGGGAGGATT 59.645 61.111 0.00 0.00 0.00 3.01
7297 8578 2.933287 TGCGGTTGGTGGGAGGAT 60.933 61.111 0.00 0.00 0.00 3.24
7298 8579 3.948719 GTGCGGTTGGTGGGAGGA 61.949 66.667 0.00 0.00 0.00 3.71
7299 8580 3.901797 GAGTGCGGTTGGTGGGAGG 62.902 68.421 0.00 0.00 0.00 4.30
7300 8581 2.358737 GAGTGCGGTTGGTGGGAG 60.359 66.667 0.00 0.00 0.00 4.30
7301 8582 3.164977 TGAGTGCGGTTGGTGGGA 61.165 61.111 0.00 0.00 0.00 4.37
7302 8583 2.978010 GTGAGTGCGGTTGGTGGG 60.978 66.667 0.00 0.00 0.00 4.61
7303 8584 3.345808 CGTGAGTGCGGTTGGTGG 61.346 66.667 0.00 0.00 0.00 4.61
7304 8585 3.345808 CCGTGAGTGCGGTTGGTG 61.346 66.667 0.00 0.00 46.11 4.17
7442 8730 4.303257 GGGCTGCAGTCCAACTAC 57.697 61.111 32.45 2.98 40.23 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.