Multiple sequence alignment - TraesCS4A01G452600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G452600 chr4A 100.000 2928 0 0 1 2928 717725822 717722895 0.000000e+00 5408.0
1 TraesCS4A01G452600 chr4A 94.495 109 6 0 1 109 733353720 733353612 5.020000e-38 169.0
2 TraesCS4A01G452600 chr4A 86.567 67 9 0 2444 2510 743322072 743322006 1.130000e-09 75.0
3 TraesCS4A01G452600 chr7D 93.018 1776 76 17 662 2420 16912936 16911192 0.000000e+00 2549.0
4 TraesCS4A01G452600 chr7D 94.697 396 13 4 2540 2928 16910555 16910161 2.500000e-170 608.0
5 TraesCS4A01G452600 chr7D 88.710 124 14 0 2426 2549 16910710 16910587 5.050000e-33 152.0
6 TraesCS4A01G452600 chr7D 83.544 79 7 4 281 359 580230869 580230941 5.240000e-08 69.4
7 TraesCS4A01G452600 chr7D 81.609 87 6 5 318 400 16913098 16913018 2.440000e-06 63.9
8 TraesCS4A01G452600 chr7A 90.367 1879 100 43 588 2436 16165109 16163282 0.000000e+00 2392.0
9 TraesCS4A01G452600 chr7A 94.388 392 18 4 2540 2928 16161855 16161465 1.500000e-167 599.0
10 TraesCS4A01G452600 chr1B 81.174 1073 79 53 1349 2394 665294303 665295279 0.000000e+00 749.0
11 TraesCS4A01G452600 chr1B 85.405 185 25 2 1509 1692 499896494 499896677 1.070000e-44 191.0
12 TraesCS4A01G452600 chr1B 82.209 163 22 6 1142 1304 665294169 665294324 1.830000e-27 134.0
13 TraesCS4A01G452600 chr3B 83.683 429 22 24 1280 1701 766032144 766031757 7.710000e-96 361.0
14 TraesCS4A01G452600 chr3B 95.531 179 7 1 393 570 307971499 307971677 4.780000e-73 285.0
15 TraesCS4A01G452600 chr3B 94.086 186 9 2 387 570 723448625 723448440 6.180000e-72 281.0
16 TraesCS4A01G452600 chr3B 96.364 110 4 0 1 110 452700005 452699896 6.450000e-42 182.0
17 TraesCS4A01G452600 chr3B 100.000 40 0 0 1783 1822 766031720 766031681 1.130000e-09 75.0
18 TraesCS4A01G452600 chr3B 100.000 31 0 0 890 920 766032361 766032331 1.130000e-04 58.4
19 TraesCS4A01G452600 chr5B 93.333 195 9 4 391 583 346616346 346616154 4.780000e-73 285.0
20 TraesCS4A01G452600 chr5B 96.000 175 7 0 396 570 589201209 589201035 4.780000e-73 285.0
21 TraesCS4A01G452600 chr5B 95.413 109 5 0 1 109 281369168 281369060 1.080000e-39 174.0
22 TraesCS4A01G452600 chr2B 92.079 202 15 1 381 582 763446636 763446836 1.720000e-72 283.0
23 TraesCS4A01G452600 chr2B 92.670 191 14 0 389 579 765569966 765570156 2.870000e-70 276.0
24 TraesCS4A01G452600 chr2B 83.425 181 28 2 1506 1685 776213602 776213781 1.800000e-37 167.0
25 TraesCS4A01G452600 chr7B 93.583 187 10 2 396 580 32329467 32329281 7.990000e-71 278.0
26 TraesCS4A01G452600 chr7B 86.603 209 26 2 364 570 103581164 103581372 2.270000e-56 230.0
27 TraesCS4A01G452600 chr7B 95.327 107 5 0 3 109 475565121 475565015 1.400000e-38 171.0
28 TraesCS4A01G452600 chr4B 92.268 194 11 3 390 579 667396902 667396709 3.720000e-69 272.0
29 TraesCS4A01G452600 chr4B 91.795 195 13 3 377 570 606181278 606181086 4.810000e-68 268.0
30 TraesCS4A01G452600 chr4B 93.519 108 7 0 3 110 467987274 467987381 8.400000e-36 161.0
31 TraesCS4A01G452600 chr1D 85.561 187 25 2 1507 1692 375646699 375646514 8.280000e-46 195.0
32 TraesCS4A01G452600 chr6B 96.364 110 4 0 1 110 156565012 156564903 6.450000e-42 182.0
33 TraesCS4A01G452600 chr6B 91.489 47 4 0 2455 2501 126687240 126687286 6.770000e-07 65.8
34 TraesCS4A01G452600 chr1A 83.957 187 28 2 1507 1692 474450729 474450544 8.340000e-41 178.0
35 TraesCS4A01G452600 chrUn 95.370 108 5 0 3 110 77055538 77055645 3.880000e-39 172.0
36 TraesCS4A01G452600 chr5A 95.370 108 5 0 3 110 29910525 29910632 3.880000e-39 172.0
37 TraesCS4A01G452600 chr4D 92.562 121 6 3 3 121 82565512 82565393 1.400000e-38 171.0
38 TraesCS4A01G452600 chr2A 83.333 180 30 0 1506 1685 759456107 759456286 1.800000e-37 167.0
39 TraesCS4A01G452600 chr2A 91.228 57 5 0 2442 2498 55932170 55932114 8.700000e-11 78.7
40 TraesCS4A01G452600 chr3A 82.383 193 29 4 1503 1691 616492652 616492461 2.330000e-36 163.0
41 TraesCS4A01G452600 chr3D 81.865 193 30 4 1503 1691 474216238 474216047 1.090000e-34 158.0
42 TraesCS4A01G452600 chr3D 83.582 134 20 2 1508 1640 23195804 23195672 1.100000e-24 124.0
43 TraesCS4A01G452600 chr3D 79.268 164 21 9 1475 1632 481702708 481702864 5.160000e-18 102.0
44 TraesCS4A01G452600 chr3D 79.104 134 24 4 1508 1639 23173728 23173597 4.020000e-14 89.8
45 TraesCS4A01G452600 chr2D 86.885 61 6 2 2442 2502 102593726 102593668 1.880000e-07 67.6
46 TraesCS4A01G452600 chr2D 85.484 62 7 2 2442 2502 634272998 634272938 2.440000e-06 63.9
47 TraesCS4A01G452600 chr5D 90.000 50 5 0 2455 2504 478329028 478328979 6.770000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G452600 chr4A 717722895 717725822 2927 True 5408.000 5408 100.0000 1 2928 1 chr4A.!!$R1 2927
1 TraesCS4A01G452600 chr7D 16910161 16913098 2937 True 843.225 2549 89.5085 318 2928 4 chr7D.!!$R1 2610
2 TraesCS4A01G452600 chr7A 16161465 16165109 3644 True 1495.500 2392 92.3775 588 2928 2 chr7A.!!$R1 2340
3 TraesCS4A01G452600 chr1B 665294169 665295279 1110 False 441.500 749 81.6915 1142 2394 2 chr1B.!!$F2 1252

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.03601 ACAGCCGACCTCTGATTTGG 60.036 55.0 0.0 0.0 35.61 3.28 F
173 174 0.10741 TCGCCAAACAACACAGAGGT 60.107 50.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 1525 0.037605 ACCCCGATCGTCAACAAGAC 60.038 55.000 15.09 0.0 44.02 3.01 R
2054 2124 1.982395 AGATGAGGAACGGACGGCA 60.982 57.895 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.487482 GCTTTTTGAAACAGCCGACC 58.513 50.000 4.79 0.00 0.00 4.79
20 21 1.067060 GCTTTTTGAAACAGCCGACCT 59.933 47.619 4.79 0.00 0.00 3.85
21 22 2.858646 GCTTTTTGAAACAGCCGACCTC 60.859 50.000 4.79 0.00 0.00 3.85
22 23 2.341846 TTTTGAAACAGCCGACCTCT 57.658 45.000 0.00 0.00 0.00 3.69
23 24 1.593196 TTTGAAACAGCCGACCTCTG 58.407 50.000 0.00 0.00 37.56 3.35
24 25 0.756294 TTGAAACAGCCGACCTCTGA 59.244 50.000 0.00 0.00 35.61 3.27
25 26 0.976641 TGAAACAGCCGACCTCTGAT 59.023 50.000 0.00 0.00 35.61 2.90
26 27 1.347707 TGAAACAGCCGACCTCTGATT 59.652 47.619 0.00 0.00 35.61 2.57
27 28 2.224523 TGAAACAGCCGACCTCTGATTT 60.225 45.455 0.00 0.00 35.61 2.17
28 29 1.813513 AACAGCCGACCTCTGATTTG 58.186 50.000 0.00 0.00 35.61 2.32
29 30 0.036010 ACAGCCGACCTCTGATTTGG 60.036 55.000 0.00 0.00 35.61 3.28
30 31 0.036010 CAGCCGACCTCTGATTTGGT 60.036 55.000 0.00 0.00 39.60 3.67
31 32 1.207089 CAGCCGACCTCTGATTTGGTA 59.793 52.381 0.00 0.00 36.59 3.25
32 33 1.482593 AGCCGACCTCTGATTTGGTAG 59.517 52.381 0.00 0.00 36.59 3.18
33 34 1.207329 GCCGACCTCTGATTTGGTAGT 59.793 52.381 0.00 0.00 36.59 2.73
34 35 2.354805 GCCGACCTCTGATTTGGTAGTT 60.355 50.000 0.00 0.00 36.59 2.24
35 36 3.118884 GCCGACCTCTGATTTGGTAGTTA 60.119 47.826 0.00 0.00 36.59 2.24
36 37 4.443034 GCCGACCTCTGATTTGGTAGTTAT 60.443 45.833 0.00 0.00 36.59 1.89
37 38 5.290386 CCGACCTCTGATTTGGTAGTTATC 58.710 45.833 0.00 0.00 36.59 1.75
38 39 5.069251 CCGACCTCTGATTTGGTAGTTATCT 59.931 44.000 0.00 0.00 36.59 1.98
39 40 6.264744 CCGACCTCTGATTTGGTAGTTATCTA 59.735 42.308 0.00 0.00 36.59 1.98
40 41 7.201884 CCGACCTCTGATTTGGTAGTTATCTAA 60.202 40.741 0.00 0.00 36.59 2.10
41 42 7.863375 CGACCTCTGATTTGGTAGTTATCTAAG 59.137 40.741 0.00 0.00 36.59 2.18
42 43 8.840200 ACCTCTGATTTGGTAGTTATCTAAGA 57.160 34.615 0.00 0.00 34.36 2.10
43 44 9.268282 ACCTCTGATTTGGTAGTTATCTAAGAA 57.732 33.333 0.00 0.00 34.36 2.52
85 86 6.718522 TTTTTGGAACCCTAACCTGTAAAG 57.281 37.500 0.00 0.00 0.00 1.85
86 87 5.391577 TTTGGAACCCTAACCTGTAAAGT 57.608 39.130 0.00 0.00 0.00 2.66
87 88 6.512514 TTTGGAACCCTAACCTGTAAAGTA 57.487 37.500 0.00 0.00 0.00 2.24
88 89 5.750352 TGGAACCCTAACCTGTAAAGTAG 57.250 43.478 0.00 0.00 0.00 2.57
89 90 5.157395 TGGAACCCTAACCTGTAAAGTAGT 58.843 41.667 0.00 0.00 0.00 2.73
90 91 6.322126 TGGAACCCTAACCTGTAAAGTAGTA 58.678 40.000 0.00 0.00 0.00 1.82
91 92 6.438425 TGGAACCCTAACCTGTAAAGTAGTAG 59.562 42.308 0.00 0.00 0.00 2.57
92 93 6.438741 GGAACCCTAACCTGTAAAGTAGTAGT 59.561 42.308 0.00 0.00 0.00 2.73
93 94 7.038729 GGAACCCTAACCTGTAAAGTAGTAGTT 60.039 40.741 0.00 0.00 0.00 2.24
94 95 7.862274 ACCCTAACCTGTAAAGTAGTAGTTT 57.138 36.000 8.04 8.04 0.00 2.66
95 96 8.267620 ACCCTAACCTGTAAAGTAGTAGTTTT 57.732 34.615 8.25 0.00 0.00 2.43
96 97 9.379770 ACCCTAACCTGTAAAGTAGTAGTTTTA 57.620 33.333 8.25 0.00 0.00 1.52
130 131 8.046294 ACTCTAGTATGATATAAAGCGTGAGG 57.954 38.462 0.00 0.00 0.00 3.86
131 132 7.883833 ACTCTAGTATGATATAAAGCGTGAGGA 59.116 37.037 0.00 0.00 0.00 3.71
132 133 8.631480 TCTAGTATGATATAAAGCGTGAGGAA 57.369 34.615 0.00 0.00 0.00 3.36
133 134 9.074576 TCTAGTATGATATAAAGCGTGAGGAAA 57.925 33.333 0.00 0.00 0.00 3.13
134 135 7.948278 AGTATGATATAAAGCGTGAGGAAAC 57.052 36.000 0.00 0.00 0.00 2.78
135 136 6.929606 AGTATGATATAAAGCGTGAGGAAACC 59.070 38.462 0.00 0.00 0.00 3.27
136 137 4.448210 TGATATAAAGCGTGAGGAAACCC 58.552 43.478 0.00 0.00 0.00 4.11
137 138 4.163458 TGATATAAAGCGTGAGGAAACCCT 59.837 41.667 0.00 0.00 36.57 4.34
138 139 2.943036 TAAAGCGTGAGGAAACCCTT 57.057 45.000 0.00 0.00 33.25 3.95
139 140 2.067365 AAAGCGTGAGGAAACCCTTT 57.933 45.000 0.00 0.00 33.25 3.11
140 141 1.605753 AAGCGTGAGGAAACCCTTTC 58.394 50.000 0.00 0.00 38.94 2.62
141 142 0.765510 AGCGTGAGGAAACCCTTTCT 59.234 50.000 0.00 0.00 39.59 2.52
142 143 1.157585 GCGTGAGGAAACCCTTTCTC 58.842 55.000 0.00 0.00 39.59 2.87
143 144 1.429463 CGTGAGGAAACCCTTTCTCG 58.571 55.000 0.00 0.00 39.59 4.04
144 145 1.270147 CGTGAGGAAACCCTTTCTCGT 60.270 52.381 0.00 0.00 39.59 4.18
145 146 2.414806 GTGAGGAAACCCTTTCTCGTC 58.585 52.381 0.00 0.00 39.59 4.20
146 147 1.000506 TGAGGAAACCCTTTCTCGTCG 59.999 52.381 0.00 0.00 39.59 5.12
147 148 1.271656 GAGGAAACCCTTTCTCGTCGA 59.728 52.381 0.00 0.00 39.59 4.20
148 149 1.690352 AGGAAACCCTTTCTCGTCGAA 59.310 47.619 0.00 0.00 39.59 3.71
149 150 2.302157 AGGAAACCCTTTCTCGTCGAAT 59.698 45.455 0.00 0.00 39.59 3.34
150 151 2.415512 GGAAACCCTTTCTCGTCGAATG 59.584 50.000 0.00 0.00 39.59 2.67
151 152 3.323243 GAAACCCTTTCTCGTCGAATGA 58.677 45.455 0.00 0.00 36.73 2.57
152 153 3.611766 AACCCTTTCTCGTCGAATGAT 57.388 42.857 0.00 0.00 0.00 2.45
153 154 2.893637 ACCCTTTCTCGTCGAATGATG 58.106 47.619 0.00 0.00 0.00 3.07
154 155 2.233922 ACCCTTTCTCGTCGAATGATGT 59.766 45.455 0.00 0.00 32.69 3.06
155 156 2.860735 CCCTTTCTCGTCGAATGATGTC 59.139 50.000 0.00 0.00 32.69 3.06
156 157 2.531912 CCTTTCTCGTCGAATGATGTCG 59.468 50.000 0.00 0.00 42.48 4.35
157 158 1.545759 TTCTCGTCGAATGATGTCGC 58.454 50.000 0.00 0.00 40.88 5.19
158 159 0.248498 TCTCGTCGAATGATGTCGCC 60.248 55.000 0.00 0.00 40.88 5.54
159 160 0.525455 CTCGTCGAATGATGTCGCCA 60.525 55.000 0.00 0.00 40.88 5.69
160 161 0.109039 TCGTCGAATGATGTCGCCAA 60.109 50.000 0.00 0.00 40.88 4.52
161 162 0.718904 CGTCGAATGATGTCGCCAAA 59.281 50.000 0.00 0.00 40.88 3.28
162 163 1.526986 CGTCGAATGATGTCGCCAAAC 60.527 52.381 0.00 0.00 40.88 2.93
163 164 1.463056 GTCGAATGATGTCGCCAAACA 59.537 47.619 0.00 0.00 40.88 2.83
164 165 2.095969 GTCGAATGATGTCGCCAAACAA 60.096 45.455 0.00 0.00 40.88 2.83
165 166 2.095969 TCGAATGATGTCGCCAAACAAC 60.096 45.455 0.00 0.00 40.88 3.32
166 167 2.350293 CGAATGATGTCGCCAAACAACA 60.350 45.455 0.00 0.00 36.54 3.33
167 168 2.704725 ATGATGTCGCCAAACAACAC 57.295 45.000 0.00 0.00 35.18 3.32
168 169 1.383523 TGATGTCGCCAAACAACACA 58.616 45.000 0.00 0.00 31.81 3.72
169 170 1.333308 TGATGTCGCCAAACAACACAG 59.667 47.619 0.00 0.00 31.81 3.66
170 171 1.601903 GATGTCGCCAAACAACACAGA 59.398 47.619 0.00 0.00 31.81 3.41
171 172 1.013596 TGTCGCCAAACAACACAGAG 58.986 50.000 0.00 0.00 0.00 3.35
172 173 0.307760 GTCGCCAAACAACACAGAGG 59.692 55.000 0.00 0.00 0.00 3.69
173 174 0.107410 TCGCCAAACAACACAGAGGT 60.107 50.000 0.00 0.00 0.00 3.85
189 190 6.319141 ACAGAGGTGAATTCAGTTTTTAGC 57.681 37.500 8.80 0.00 0.00 3.09
190 191 5.827797 ACAGAGGTGAATTCAGTTTTTAGCA 59.172 36.000 8.80 0.00 0.00 3.49
191 192 6.491403 ACAGAGGTGAATTCAGTTTTTAGCAT 59.509 34.615 8.80 0.00 0.00 3.79
192 193 6.805271 CAGAGGTGAATTCAGTTTTTAGCATG 59.195 38.462 8.80 0.00 0.00 4.06
193 194 6.491403 AGAGGTGAATTCAGTTTTTAGCATGT 59.509 34.615 8.80 0.00 0.00 3.21
194 195 7.014615 AGAGGTGAATTCAGTTTTTAGCATGTT 59.985 33.333 8.80 0.00 0.00 2.71
195 196 6.925165 AGGTGAATTCAGTTTTTAGCATGTTG 59.075 34.615 8.80 0.00 0.00 3.33
196 197 6.346838 GGTGAATTCAGTTTTTAGCATGTTGC 60.347 38.462 8.80 0.00 45.46 4.17
208 209 2.669364 GCATGTTGCTTTGAGTTCTGG 58.331 47.619 0.00 0.00 40.96 3.86
209 210 2.294233 GCATGTTGCTTTGAGTTCTGGA 59.706 45.455 0.00 0.00 40.96 3.86
210 211 3.243501 GCATGTTGCTTTGAGTTCTGGAA 60.244 43.478 0.00 0.00 40.96 3.53
211 212 4.543692 CATGTTGCTTTGAGTTCTGGAAG 58.456 43.478 0.00 0.00 0.00 3.46
212 213 3.620488 TGTTGCTTTGAGTTCTGGAAGT 58.380 40.909 0.00 0.00 33.76 3.01
213 214 4.776349 TGTTGCTTTGAGTTCTGGAAGTA 58.224 39.130 0.00 0.00 33.76 2.24
214 215 5.189928 TGTTGCTTTGAGTTCTGGAAGTAA 58.810 37.500 0.00 0.00 33.76 2.24
215 216 5.827797 TGTTGCTTTGAGTTCTGGAAGTAAT 59.172 36.000 0.00 0.00 33.76 1.89
216 217 6.995686 TGTTGCTTTGAGTTCTGGAAGTAATA 59.004 34.615 0.00 0.00 33.76 0.98
217 218 7.665559 TGTTGCTTTGAGTTCTGGAAGTAATAT 59.334 33.333 0.00 0.00 33.76 1.28
218 219 7.615582 TGCTTTGAGTTCTGGAAGTAATATG 57.384 36.000 0.00 0.00 33.76 1.78
219 220 6.599244 TGCTTTGAGTTCTGGAAGTAATATGG 59.401 38.462 0.00 0.00 33.76 2.74
220 221 6.038714 GCTTTGAGTTCTGGAAGTAATATGGG 59.961 42.308 0.00 0.00 33.76 4.00
221 222 6.884472 TTGAGTTCTGGAAGTAATATGGGA 57.116 37.500 0.00 0.00 33.76 4.37
222 223 6.485830 TGAGTTCTGGAAGTAATATGGGAG 57.514 41.667 0.00 0.00 33.76 4.30
223 224 6.202331 TGAGTTCTGGAAGTAATATGGGAGA 58.798 40.000 0.00 0.00 33.76 3.71
224 225 6.846505 TGAGTTCTGGAAGTAATATGGGAGAT 59.153 38.462 0.00 0.00 33.76 2.75
225 226 7.072263 AGTTCTGGAAGTAATATGGGAGATG 57.928 40.000 0.00 0.00 33.76 2.90
226 227 6.846505 AGTTCTGGAAGTAATATGGGAGATGA 59.153 38.462 0.00 0.00 33.76 2.92
227 228 6.924913 TCTGGAAGTAATATGGGAGATGAG 57.075 41.667 0.00 0.00 33.76 2.90
228 229 5.782331 TCTGGAAGTAATATGGGAGATGAGG 59.218 44.000 0.00 0.00 33.76 3.86
229 230 5.726560 TGGAAGTAATATGGGAGATGAGGA 58.273 41.667 0.00 0.00 0.00 3.71
230 231 6.150332 TGGAAGTAATATGGGAGATGAGGAA 58.850 40.000 0.00 0.00 0.00 3.36
231 232 6.270927 TGGAAGTAATATGGGAGATGAGGAAG 59.729 42.308 0.00 0.00 0.00 3.46
232 233 6.498651 GGAAGTAATATGGGAGATGAGGAAGA 59.501 42.308 0.00 0.00 0.00 2.87
233 234 7.016661 GGAAGTAATATGGGAGATGAGGAAGAA 59.983 40.741 0.00 0.00 0.00 2.52
234 235 7.937700 AGTAATATGGGAGATGAGGAAGAAA 57.062 36.000 0.00 0.00 0.00 2.52
235 236 8.337118 AGTAATATGGGAGATGAGGAAGAAAA 57.663 34.615 0.00 0.00 0.00 2.29
236 237 8.781951 AGTAATATGGGAGATGAGGAAGAAAAA 58.218 33.333 0.00 0.00 0.00 1.94
237 238 9.579932 GTAATATGGGAGATGAGGAAGAAAAAT 57.420 33.333 0.00 0.00 0.00 1.82
239 240 9.804977 AATATGGGAGATGAGGAAGAAAAATAG 57.195 33.333 0.00 0.00 0.00 1.73
240 241 5.440610 TGGGAGATGAGGAAGAAAAATAGC 58.559 41.667 0.00 0.00 0.00 2.97
241 242 5.044919 TGGGAGATGAGGAAGAAAAATAGCA 60.045 40.000 0.00 0.00 0.00 3.49
242 243 5.530543 GGGAGATGAGGAAGAAAAATAGCAG 59.469 44.000 0.00 0.00 0.00 4.24
243 244 5.008514 GGAGATGAGGAAGAAAAATAGCAGC 59.991 44.000 0.00 0.00 0.00 5.25
244 245 5.753716 AGATGAGGAAGAAAAATAGCAGCT 58.246 37.500 0.00 0.00 0.00 4.24
245 246 6.893583 AGATGAGGAAGAAAAATAGCAGCTA 58.106 36.000 4.10 4.10 0.00 3.32
246 247 6.991531 AGATGAGGAAGAAAAATAGCAGCTAG 59.008 38.462 8.43 0.00 0.00 3.42
247 248 5.431765 TGAGGAAGAAAAATAGCAGCTAGG 58.568 41.667 8.43 0.00 0.00 3.02
248 249 5.189736 TGAGGAAGAAAAATAGCAGCTAGGA 59.810 40.000 8.43 0.00 0.00 2.94
249 250 6.126652 TGAGGAAGAAAAATAGCAGCTAGGAT 60.127 38.462 8.43 0.00 0.00 3.24
250 251 6.295249 AGGAAGAAAAATAGCAGCTAGGATC 58.705 40.000 8.43 4.05 0.00 3.36
251 252 5.471797 GGAAGAAAAATAGCAGCTAGGATCC 59.528 44.000 8.43 2.48 0.00 3.36
252 253 4.636249 AGAAAAATAGCAGCTAGGATCCG 58.364 43.478 8.43 0.00 0.00 4.18
253 254 4.101741 AGAAAAATAGCAGCTAGGATCCGT 59.898 41.667 8.43 0.00 0.00 4.69
254 255 4.423625 AAAATAGCAGCTAGGATCCGTT 57.576 40.909 8.43 0.00 0.00 4.44
255 256 4.423625 AAATAGCAGCTAGGATCCGTTT 57.576 40.909 8.43 0.00 0.00 3.60
256 257 4.423625 AATAGCAGCTAGGATCCGTTTT 57.576 40.909 8.43 0.00 0.00 2.43
257 258 2.029838 AGCAGCTAGGATCCGTTTTG 57.970 50.000 5.98 5.60 0.00 2.44
258 259 1.555075 AGCAGCTAGGATCCGTTTTGA 59.445 47.619 5.98 0.00 0.00 2.69
259 260 2.171448 AGCAGCTAGGATCCGTTTTGAT 59.829 45.455 5.98 0.06 0.00 2.57
260 261 3.388024 AGCAGCTAGGATCCGTTTTGATA 59.612 43.478 5.98 0.00 0.00 2.15
261 262 4.127171 GCAGCTAGGATCCGTTTTGATAA 58.873 43.478 5.98 0.00 0.00 1.75
262 263 4.574828 GCAGCTAGGATCCGTTTTGATAAA 59.425 41.667 5.98 0.00 0.00 1.40
263 264 5.065988 GCAGCTAGGATCCGTTTTGATAAAA 59.934 40.000 5.98 0.00 0.00 1.52
264 265 6.487103 CAGCTAGGATCCGTTTTGATAAAAC 58.513 40.000 5.98 7.01 45.56 2.43
284 285 9.784531 ATAAAACATAGGTCATGATTGTAGAGG 57.215 33.333 0.00 0.00 38.10 3.69
285 286 5.220710 ACATAGGTCATGATTGTAGAGGC 57.779 43.478 0.00 0.00 38.10 4.70
286 287 4.655649 ACATAGGTCATGATTGTAGAGGCA 59.344 41.667 0.00 0.00 38.10 4.75
287 288 5.130975 ACATAGGTCATGATTGTAGAGGCAA 59.869 40.000 0.00 0.00 38.10 4.52
288 289 4.574674 AGGTCATGATTGTAGAGGCAAA 57.425 40.909 0.00 0.00 31.63 3.68
289 290 5.121380 AGGTCATGATTGTAGAGGCAAAT 57.879 39.130 0.00 0.00 31.63 2.32
290 291 5.513233 AGGTCATGATTGTAGAGGCAAATT 58.487 37.500 0.00 0.00 31.63 1.82
291 292 5.954150 AGGTCATGATTGTAGAGGCAAATTT 59.046 36.000 0.00 0.00 31.63 1.82
292 293 7.118723 AGGTCATGATTGTAGAGGCAAATTTA 58.881 34.615 0.00 0.00 31.63 1.40
293 294 7.615365 AGGTCATGATTGTAGAGGCAAATTTAA 59.385 33.333 0.00 0.00 31.63 1.52
294 295 7.917505 GGTCATGATTGTAGAGGCAAATTTAAG 59.082 37.037 0.00 0.00 31.63 1.85
295 296 7.433425 GTCATGATTGTAGAGGCAAATTTAAGC 59.567 37.037 0.00 0.00 31.63 3.09
296 297 7.340232 TCATGATTGTAGAGGCAAATTTAAGCT 59.660 33.333 0.00 0.00 31.63 3.74
297 298 8.623903 CATGATTGTAGAGGCAAATTTAAGCTA 58.376 33.333 0.00 0.00 31.63 3.32
298 299 8.213518 TGATTGTAGAGGCAAATTTAAGCTAG 57.786 34.615 0.00 0.00 31.63 3.42
299 300 6.436843 TTGTAGAGGCAAATTTAAGCTAGC 57.563 37.500 6.62 6.62 0.00 3.42
300 301 5.496556 TGTAGAGGCAAATTTAAGCTAGCA 58.503 37.500 18.83 0.00 0.00 3.49
301 302 4.972514 AGAGGCAAATTTAAGCTAGCAC 57.027 40.909 18.83 0.00 0.00 4.40
302 303 3.375299 AGAGGCAAATTTAAGCTAGCACG 59.625 43.478 18.83 0.00 0.00 5.34
303 304 3.081804 AGGCAAATTTAAGCTAGCACGT 58.918 40.909 18.83 4.05 0.00 4.49
304 305 4.258543 AGGCAAATTTAAGCTAGCACGTA 58.741 39.130 18.83 2.98 0.00 3.57
305 306 4.094442 AGGCAAATTTAAGCTAGCACGTAC 59.906 41.667 18.83 0.00 0.00 3.67
306 307 4.142773 GGCAAATTTAAGCTAGCACGTACA 60.143 41.667 18.83 0.00 0.00 2.90
307 308 5.448632 GGCAAATTTAAGCTAGCACGTACAT 60.449 40.000 18.83 1.96 0.00 2.29
308 309 6.238266 GGCAAATTTAAGCTAGCACGTACATA 60.238 38.462 18.83 0.00 0.00 2.29
309 310 7.352739 GCAAATTTAAGCTAGCACGTACATAT 58.647 34.615 18.83 0.00 0.00 1.78
310 311 7.855904 GCAAATTTAAGCTAGCACGTACATATT 59.144 33.333 18.83 1.18 0.00 1.28
311 312 9.716507 CAAATTTAAGCTAGCACGTACATATTT 57.283 29.630 18.83 8.32 0.00 1.40
315 316 9.806203 TTTAAGCTAGCACGTACATATTTTAGA 57.194 29.630 18.83 0.00 0.00 2.10
316 317 9.976511 TTAAGCTAGCACGTACATATTTTAGAT 57.023 29.630 18.83 0.00 0.00 1.98
317 318 8.522178 AAGCTAGCACGTACATATTTTAGATC 57.478 34.615 18.83 0.00 0.00 2.75
318 319 7.658261 AGCTAGCACGTACATATTTTAGATCA 58.342 34.615 18.83 0.00 0.00 2.92
319 320 8.141909 AGCTAGCACGTACATATTTTAGATCAA 58.858 33.333 18.83 0.00 0.00 2.57
320 321 8.428536 GCTAGCACGTACATATTTTAGATCAAG 58.571 37.037 10.63 0.00 0.00 3.02
321 322 7.178712 AGCACGTACATATTTTAGATCAAGC 57.821 36.000 0.00 0.00 0.00 4.01
322 323 6.986817 AGCACGTACATATTTTAGATCAAGCT 59.013 34.615 0.00 0.00 0.00 3.74
323 324 8.141909 AGCACGTACATATTTTAGATCAAGCTA 58.858 33.333 0.00 0.00 0.00 3.32
324 325 8.761497 GCACGTACATATTTTAGATCAAGCTAA 58.239 33.333 0.00 0.00 0.00 3.09
359 360 5.277825 TGGTGTTTTTCTTAATGTGAAGCG 58.722 37.500 0.00 0.00 0.00 4.68
362 363 5.974751 GTGTTTTTCTTAATGTGAAGCGGAA 59.025 36.000 0.00 0.00 0.00 4.30
367 368 8.909708 TTTTCTTAATGTGAAGCGGAATATTG 57.090 30.769 0.00 0.00 0.00 1.90
368 369 6.618287 TCTTAATGTGAAGCGGAATATTGG 57.382 37.500 0.00 0.00 0.00 3.16
369 370 6.353323 TCTTAATGTGAAGCGGAATATTGGA 58.647 36.000 0.00 0.00 0.00 3.53
370 371 6.483307 TCTTAATGTGAAGCGGAATATTGGAG 59.517 38.462 0.00 0.00 0.00 3.86
372 373 4.746535 TGTGAAGCGGAATATTGGAGTA 57.253 40.909 0.00 0.00 0.00 2.59
373 374 5.092554 TGTGAAGCGGAATATTGGAGTAA 57.907 39.130 0.00 0.00 0.00 2.24
374 375 5.492895 TGTGAAGCGGAATATTGGAGTAAA 58.507 37.500 0.00 0.00 0.00 2.01
375 376 5.941058 TGTGAAGCGGAATATTGGAGTAAAA 59.059 36.000 0.00 0.00 0.00 1.52
376 377 6.601613 TGTGAAGCGGAATATTGGAGTAAAAT 59.398 34.615 0.00 0.00 0.00 1.82
392 393 6.710295 GGAGTAAAATTTTTGGCACTGGATTT 59.290 34.615 9.06 0.00 0.00 2.17
393 394 7.228507 GGAGTAAAATTTTTGGCACTGGATTTT 59.771 33.333 9.06 11.96 33.06 1.82
394 395 7.929159 AGTAAAATTTTTGGCACTGGATTTTG 58.071 30.769 9.06 0.00 31.48 2.44
395 396 6.772360 AAAATTTTTGGCACTGGATTTTGT 57.228 29.167 0.00 0.00 0.00 2.83
396 397 6.772360 AAATTTTTGGCACTGGATTTTGTT 57.228 29.167 0.00 0.00 0.00 2.83
397 398 6.772360 AATTTTTGGCACTGGATTTTGTTT 57.228 29.167 0.00 0.00 0.00 2.83
398 399 7.872113 AATTTTTGGCACTGGATTTTGTTTA 57.128 28.000 0.00 0.00 0.00 2.01
399 400 6.670077 TTTTTGGCACTGGATTTTGTTTAC 57.330 33.333 0.00 0.00 0.00 2.01
400 401 5.344743 TTTGGCACTGGATTTTGTTTACA 57.655 34.783 0.00 0.00 0.00 2.41
401 402 4.582701 TGGCACTGGATTTTGTTTACAG 57.417 40.909 0.00 0.00 35.40 2.74
402 403 3.957497 TGGCACTGGATTTTGTTTACAGT 59.043 39.130 0.00 0.00 42.62 3.55
403 404 4.404073 TGGCACTGGATTTTGTTTACAGTT 59.596 37.500 0.00 0.00 40.14 3.16
404 405 5.105146 TGGCACTGGATTTTGTTTACAGTTT 60.105 36.000 0.00 0.00 40.14 2.66
405 406 5.815222 GGCACTGGATTTTGTTTACAGTTTT 59.185 36.000 0.00 0.00 40.14 2.43
406 407 6.238076 GGCACTGGATTTTGTTTACAGTTTTG 60.238 38.462 0.00 0.00 40.14 2.44
407 408 6.704819 CACTGGATTTTGTTTACAGTTTTGC 58.295 36.000 0.00 0.00 40.14 3.68
408 409 6.534793 CACTGGATTTTGTTTACAGTTTTGCT 59.465 34.615 0.00 0.00 40.14 3.91
409 410 7.704472 CACTGGATTTTGTTTACAGTTTTGCTA 59.296 33.333 0.00 0.00 40.14 3.49
410 411 7.920682 ACTGGATTTTGTTTACAGTTTTGCTAG 59.079 33.333 0.00 0.00 39.16 3.42
411 412 8.001881 TGGATTTTGTTTACAGTTTTGCTAGA 57.998 30.769 0.00 0.00 0.00 2.43
412 413 8.470805 TGGATTTTGTTTACAGTTTTGCTAGAA 58.529 29.630 0.00 0.00 0.00 2.10
413 414 8.752254 GGATTTTGTTTACAGTTTTGCTAGAAC 58.248 33.333 0.00 0.00 0.00 3.01
414 415 9.516314 GATTTTGTTTACAGTTTTGCTAGAACT 57.484 29.630 0.00 0.00 37.82 3.01
415 416 8.905103 TTTTGTTTACAGTTTTGCTAGAACTC 57.095 30.769 0.00 0.00 35.26 3.01
416 417 7.618502 TTGTTTACAGTTTTGCTAGAACTCA 57.381 32.000 0.00 0.00 35.26 3.41
417 418 7.801716 TGTTTACAGTTTTGCTAGAACTCAT 57.198 32.000 0.00 0.00 35.26 2.90
418 419 7.861630 TGTTTACAGTTTTGCTAGAACTCATC 58.138 34.615 0.00 0.00 35.26 2.92
419 420 7.715249 TGTTTACAGTTTTGCTAGAACTCATCT 59.285 33.333 0.00 0.00 42.48 2.90
420 421 9.204570 GTTTACAGTTTTGCTAGAACTCATCTA 57.795 33.333 0.00 0.00 39.71 1.98
448 449 8.868522 TGAGATAAAATTTGGTCTCATTCACT 57.131 30.769 22.30 0.00 41.40 3.41
449 450 9.300681 TGAGATAAAATTTGGTCTCATTCACTT 57.699 29.630 22.30 0.00 41.40 3.16
457 458 9.860898 AATTTGGTCTCATTCACTTTTTATAGC 57.139 29.630 0.00 0.00 0.00 2.97
458 459 7.391148 TTGGTCTCATTCACTTTTTATAGCC 57.609 36.000 0.00 0.00 0.00 3.93
459 460 6.480763 TGGTCTCATTCACTTTTTATAGCCA 58.519 36.000 0.00 0.00 0.00 4.75
460 461 7.118723 TGGTCTCATTCACTTTTTATAGCCAT 58.881 34.615 0.00 0.00 0.00 4.40
461 462 7.615365 TGGTCTCATTCACTTTTTATAGCCATT 59.385 33.333 0.00 0.00 0.00 3.16
462 463 7.917505 GGTCTCATTCACTTTTTATAGCCATTG 59.082 37.037 0.00 0.00 0.00 2.82
463 464 7.917505 GTCTCATTCACTTTTTATAGCCATTGG 59.082 37.037 0.00 0.00 0.00 3.16
464 465 7.833682 TCTCATTCACTTTTTATAGCCATTGGA 59.166 33.333 6.95 0.00 0.00 3.53
465 466 8.537728 TCATTCACTTTTTATAGCCATTGGAT 57.462 30.769 6.95 1.78 0.00 3.41
466 467 8.415553 TCATTCACTTTTTATAGCCATTGGATG 58.584 33.333 6.95 0.00 0.00 3.51
467 468 7.716799 TTCACTTTTTATAGCCATTGGATGT 57.283 32.000 6.95 0.10 0.00 3.06
468 469 7.099266 TCACTTTTTATAGCCATTGGATGTG 57.901 36.000 6.95 2.95 0.00 3.21
469 470 6.889177 TCACTTTTTATAGCCATTGGATGTGA 59.111 34.615 6.95 5.43 0.00 3.58
470 471 7.560991 TCACTTTTTATAGCCATTGGATGTGAT 59.439 33.333 6.95 0.00 0.00 3.06
471 472 7.650504 CACTTTTTATAGCCATTGGATGTGATG 59.349 37.037 6.95 0.00 0.00 3.07
472 473 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
473 474 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
474 475 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
475 476 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
476 477 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
477 478 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
478 479 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
479 480 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
480 481 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
481 482 6.404403 GCCATTGGATGTGATGCTATAAGATG 60.404 42.308 6.95 0.00 0.00 2.90
482 483 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
483 484 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
484 485 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
485 486 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
486 487 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
487 488 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
488 489 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
489 490 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
490 491 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
491 492 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
492 493 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
493 494 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
494 495 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
495 496 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
496 497 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
497 498 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
498 499 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
499 500 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
500 501 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
501 502 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
502 503 1.078072 TGTGTGCTGACGTGGGTTT 60.078 52.632 0.00 0.00 0.00 3.27
503 504 0.678366 TGTGTGCTGACGTGGGTTTT 60.678 50.000 0.00 0.00 0.00 2.43
504 505 1.301423 GTGTGCTGACGTGGGTTTTA 58.699 50.000 0.00 0.00 0.00 1.52
505 506 1.877443 GTGTGCTGACGTGGGTTTTAT 59.123 47.619 0.00 0.00 0.00 1.40
506 507 2.095919 GTGTGCTGACGTGGGTTTTATC 60.096 50.000 0.00 0.00 0.00 1.75
507 508 1.467342 GTGCTGACGTGGGTTTTATCC 59.533 52.381 0.00 0.00 0.00 2.59
508 509 0.725117 GCTGACGTGGGTTTTATCCG 59.275 55.000 0.00 0.00 0.00 4.18
509 510 1.942586 GCTGACGTGGGTTTTATCCGT 60.943 52.381 0.00 0.00 0.00 4.69
510 511 2.419667 CTGACGTGGGTTTTATCCGTT 58.580 47.619 0.00 0.00 0.00 4.44
511 512 2.414138 CTGACGTGGGTTTTATCCGTTC 59.586 50.000 0.00 0.00 0.00 3.95
512 513 2.037511 TGACGTGGGTTTTATCCGTTCT 59.962 45.455 0.00 0.00 0.00 3.01
513 514 3.069289 GACGTGGGTTTTATCCGTTCTT 58.931 45.455 0.00 0.00 0.00 2.52
514 515 2.809696 ACGTGGGTTTTATCCGTTCTTG 59.190 45.455 0.00 0.00 0.00 3.02
515 516 2.809696 CGTGGGTTTTATCCGTTCTTGT 59.190 45.455 0.00 0.00 0.00 3.16
516 517 3.251487 CGTGGGTTTTATCCGTTCTTGTT 59.749 43.478 0.00 0.00 0.00 2.83
517 518 4.261280 CGTGGGTTTTATCCGTTCTTGTTT 60.261 41.667 0.00 0.00 0.00 2.83
518 519 5.593968 GTGGGTTTTATCCGTTCTTGTTTT 58.406 37.500 0.00 0.00 0.00 2.43
519 520 6.044046 GTGGGTTTTATCCGTTCTTGTTTTT 58.956 36.000 0.00 0.00 0.00 1.94
520 521 7.201835 GTGGGTTTTATCCGTTCTTGTTTTTA 58.798 34.615 0.00 0.00 0.00 1.52
521 522 7.705752 GTGGGTTTTATCCGTTCTTGTTTTTAA 59.294 33.333 0.00 0.00 0.00 1.52
522 523 8.255905 TGGGTTTTATCCGTTCTTGTTTTTAAA 58.744 29.630 0.00 0.00 0.00 1.52
523 524 9.096160 GGGTTTTATCCGTTCTTGTTTTTAAAA 57.904 29.630 0.00 0.00 0.00 1.52
570 571 8.270137 TCATCTAGATGAGTTCTAGGTACTCT 57.730 38.462 27.93 10.35 44.99 3.24
571 572 8.719596 TCATCTAGATGAGTTCTAGGTACTCTT 58.280 37.037 27.93 15.72 44.99 2.85
572 573 9.349713 CATCTAGATGAGTTCTAGGTACTCTTT 57.650 37.037 25.78 11.62 44.99 2.52
608 609 4.096003 CCGGTTCCGCATGGGTCT 62.096 66.667 9.14 0.00 37.00 3.85
673 704 4.189580 CGGGTGGTATGGCAGGGG 62.190 72.222 0.00 0.00 0.00 4.79
762 799 4.435436 ATGTGCGCGCGGAGAGAA 62.435 61.111 33.06 15.06 0.00 2.87
767 804 4.161976 CGCGCGGAGAGAACGAGA 62.162 66.667 24.84 0.00 32.84 4.04
768 805 2.277628 GCGCGGAGAGAACGAGAG 60.278 66.667 8.83 0.00 32.84 3.20
769 806 2.751913 GCGCGGAGAGAACGAGAGA 61.752 63.158 8.83 0.00 32.84 3.10
809 852 1.673168 GCAAAGCTATCCACCAGAGG 58.327 55.000 0.00 0.00 0.00 3.69
835 878 2.943033 GGACGAATGGATAAGGTTGGTG 59.057 50.000 0.00 0.00 0.00 4.17
841 884 1.633432 TGGATAAGGTTGGTGAGTGGG 59.367 52.381 0.00 0.00 0.00 4.61
842 885 1.633945 GGATAAGGTTGGTGAGTGGGT 59.366 52.381 0.00 0.00 0.00 4.51
843 886 2.841881 GGATAAGGTTGGTGAGTGGGTA 59.158 50.000 0.00 0.00 0.00 3.69
844 887 3.370209 GGATAAGGTTGGTGAGTGGGTAC 60.370 52.174 0.00 0.00 0.00 3.34
948 993 1.452108 GCCGATTCCCACCTCCTTG 60.452 63.158 0.00 0.00 0.00 3.61
1008 1061 3.699134 GACAACCCCGATGGCCTCC 62.699 68.421 3.32 0.00 37.83 4.30
1197 1250 4.394712 GCCCTGGTGGAGGACGTG 62.395 72.222 0.00 0.00 46.33 4.49
1320 1373 1.139947 GGACCGGAAGAGCTTCGAG 59.860 63.158 9.46 1.29 40.37 4.04
1405 1458 0.739561 GGAGGAGCACAGGTACGTAG 59.260 60.000 0.00 0.00 0.00 3.51
1444 1497 1.611491 GAAAGCTCGGATCGGATCTCT 59.389 52.381 16.96 7.21 0.00 3.10
1454 1507 4.562347 CGGATCGGATCTCTCATGGAAAAT 60.562 45.833 16.96 0.00 0.00 1.82
1455 1508 5.312079 GGATCGGATCTCTCATGGAAAATT 58.688 41.667 16.96 0.00 0.00 1.82
1456 1509 5.411053 GGATCGGATCTCTCATGGAAAATTC 59.589 44.000 16.96 0.00 0.00 2.17
1472 1525 1.684386 ATTCCAGAGGAGGCTCTGCG 61.684 60.000 15.23 0.79 46.89 5.18
1477 1530 1.153667 GAGGAGGCTCTGCGTCTTG 60.154 63.158 15.23 0.00 42.20 3.02
1482 1535 0.601311 AGGCTCTGCGTCTTGTTGAC 60.601 55.000 0.00 0.00 42.06 3.18
1871 1932 4.444838 CGGTCATGTTCCCGCCGA 62.445 66.667 7.96 0.00 44.57 5.54
2054 2124 4.854399 TCTTGATTGATTCGTTTTGCGTT 58.146 34.783 0.00 0.00 42.13 4.84
2107 2183 2.669364 CGCCGGCGAATAAGTAAGTAT 58.331 47.619 44.86 0.00 42.83 2.12
2108 2184 3.054878 CGCCGGCGAATAAGTAAGTATT 58.945 45.455 44.86 0.00 42.83 1.89
2135 2211 1.069636 GCTGACTGTTGCAAGTGCTAC 60.070 52.381 0.00 10.39 44.83 3.58
2173 2255 0.912486 CCCGGGAAAGGTTCAGAGAT 59.088 55.000 18.48 0.00 0.00 2.75
2216 2298 1.204704 TCCCGATGTGTAGCTGTTCAG 59.795 52.381 0.00 0.00 0.00 3.02
2217 2299 1.204704 CCCGATGTGTAGCTGTTCAGA 59.795 52.381 0.00 0.00 0.00 3.27
2218 2300 2.534298 CCGATGTGTAGCTGTTCAGAG 58.466 52.381 0.00 0.00 0.00 3.35
2219 2301 2.164422 CCGATGTGTAGCTGTTCAGAGA 59.836 50.000 0.00 0.00 0.00 3.10
2306 2396 6.799925 CACTTTGACGTGAATAAATTACACCC 59.200 38.462 0.00 0.00 37.06 4.61
2308 2398 4.567971 TGACGTGAATAAATTACACCCGT 58.432 39.130 0.00 0.00 0.00 5.28
2325 2415 2.350868 CCCGTATGTCTCTGCTCGTATG 60.351 54.545 0.00 0.00 0.00 2.39
2357 2447 7.199766 CACCTTAATTTCACTGTAACAGCAAA 58.800 34.615 0.00 0.00 34.37 3.68
2414 2504 2.030958 CAAACCTGGCCGTACCGAC 61.031 63.158 0.00 0.00 43.94 4.79
2472 4319 6.040955 TGTCGAAGAAATGGCTGTATCTAGAT 59.959 38.462 10.73 10.73 39.69 1.98
2651 4544 3.129287 GCCATTGACCATTACAACAGGAG 59.871 47.826 0.00 0.00 31.70 3.69
2669 4563 3.057734 GGAGAAAACACCTACACGACAG 58.942 50.000 0.00 0.00 0.00 3.51
2738 4632 5.049954 CCATGGCAGAAAATTTCAAGTTGTG 60.050 40.000 8.55 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.357637 CAGAGGTCGGCTGTTTCAAAAA 59.642 45.455 0.00 0.00 0.00 1.94
3 4 1.946768 CAGAGGTCGGCTGTTTCAAAA 59.053 47.619 0.00 0.00 0.00 2.44
4 5 1.140052 TCAGAGGTCGGCTGTTTCAAA 59.860 47.619 0.00 0.00 34.98 2.69
6 7 0.976641 ATCAGAGGTCGGCTGTTTCA 59.023 50.000 0.00 0.00 34.98 2.69
7 8 2.100605 AATCAGAGGTCGGCTGTTTC 57.899 50.000 0.00 0.00 34.98 2.78
8 9 2.154462 CAAATCAGAGGTCGGCTGTTT 58.846 47.619 0.00 0.00 34.98 2.83
10 11 0.036010 CCAAATCAGAGGTCGGCTGT 60.036 55.000 0.00 0.00 34.98 4.40
11 12 0.036010 ACCAAATCAGAGGTCGGCTG 60.036 55.000 0.00 0.00 30.79 4.85
12 13 1.482593 CTACCAAATCAGAGGTCGGCT 59.517 52.381 0.00 0.00 39.31 5.52
13 14 1.207329 ACTACCAAATCAGAGGTCGGC 59.793 52.381 0.00 0.00 39.31 5.54
14 15 3.611766 AACTACCAAATCAGAGGTCGG 57.388 47.619 0.00 0.00 39.31 4.79
15 16 6.150396 AGATAACTACCAAATCAGAGGTCG 57.850 41.667 0.00 0.00 39.31 4.79
16 17 8.915036 TCTTAGATAACTACCAAATCAGAGGTC 58.085 37.037 0.00 0.00 39.31 3.85
17 18 8.840200 TCTTAGATAACTACCAAATCAGAGGT 57.160 34.615 0.00 0.00 41.89 3.85
62 63 6.196434 ACTTTACAGGTTAGGGTTCCAAAAA 58.804 36.000 0.00 0.00 0.00 1.94
63 64 5.768752 ACTTTACAGGTTAGGGTTCCAAAA 58.231 37.500 0.00 0.00 0.00 2.44
64 65 5.391577 ACTTTACAGGTTAGGGTTCCAAA 57.608 39.130 0.00 0.00 0.00 3.28
65 66 5.608015 ACTACTTTACAGGTTAGGGTTCCAA 59.392 40.000 0.00 0.00 0.00 3.53
66 67 5.157395 ACTACTTTACAGGTTAGGGTTCCA 58.843 41.667 0.00 0.00 0.00 3.53
67 68 5.752036 ACTACTTTACAGGTTAGGGTTCC 57.248 43.478 0.00 0.00 0.00 3.62
68 69 7.473735 ACTACTACTTTACAGGTTAGGGTTC 57.526 40.000 0.00 0.00 0.00 3.62
69 70 7.862274 AACTACTACTTTACAGGTTAGGGTT 57.138 36.000 0.00 0.00 0.00 4.11
70 71 7.862274 AAACTACTACTTTACAGGTTAGGGT 57.138 36.000 0.00 0.00 0.00 4.34
104 105 9.163899 CCTCACGCTTTATATCATACTAGAGTA 57.836 37.037 0.00 0.00 34.67 2.59
105 106 7.883833 TCCTCACGCTTTATATCATACTAGAGT 59.116 37.037 0.00 0.00 0.00 3.24
106 107 8.270080 TCCTCACGCTTTATATCATACTAGAG 57.730 38.462 0.00 0.00 0.00 2.43
107 108 8.631480 TTCCTCACGCTTTATATCATACTAGA 57.369 34.615 0.00 0.00 0.00 2.43
108 109 9.130312 GTTTCCTCACGCTTTATATCATACTAG 57.870 37.037 0.00 0.00 0.00 2.57
109 110 8.086522 GGTTTCCTCACGCTTTATATCATACTA 58.913 37.037 0.00 0.00 0.00 1.82
110 111 6.929606 GGTTTCCTCACGCTTTATATCATACT 59.070 38.462 0.00 0.00 0.00 2.12
111 112 6.147328 GGGTTTCCTCACGCTTTATATCATAC 59.853 42.308 0.00 0.00 0.00 2.39
112 113 6.042781 AGGGTTTCCTCACGCTTTATATCATA 59.957 38.462 0.00 0.00 39.80 2.15
113 114 5.063880 GGGTTTCCTCACGCTTTATATCAT 58.936 41.667 0.00 0.00 0.00 2.45
114 115 4.163458 AGGGTTTCCTCACGCTTTATATCA 59.837 41.667 0.00 0.00 39.80 2.15
115 116 4.704965 AGGGTTTCCTCACGCTTTATATC 58.295 43.478 0.00 0.00 39.80 1.63
116 117 4.772886 AGGGTTTCCTCACGCTTTATAT 57.227 40.909 0.00 0.00 39.80 0.86
117 118 4.563140 AAGGGTTTCCTCACGCTTTATA 57.437 40.909 0.00 0.00 45.09 0.98
118 119 3.434940 AAGGGTTTCCTCACGCTTTAT 57.565 42.857 0.00 0.00 45.09 1.40
119 120 2.943036 AAGGGTTTCCTCACGCTTTA 57.057 45.000 0.00 0.00 45.09 1.85
120 121 3.821306 AAGGGTTTCCTCACGCTTT 57.179 47.368 0.00 0.00 45.09 3.51
122 123 0.765510 AGAAAGGGTTTCCTCACGCT 59.234 50.000 0.00 0.00 44.07 5.07
123 124 1.157585 GAGAAAGGGTTTCCTCACGC 58.842 55.000 0.00 0.00 44.07 5.34
124 125 1.270147 ACGAGAAAGGGTTTCCTCACG 60.270 52.381 0.00 0.00 44.07 4.35
125 126 2.414806 GACGAGAAAGGGTTTCCTCAC 58.585 52.381 0.00 0.00 44.07 3.51
126 127 1.000506 CGACGAGAAAGGGTTTCCTCA 59.999 52.381 0.00 0.00 44.07 3.86
127 128 1.271656 TCGACGAGAAAGGGTTTCCTC 59.728 52.381 0.00 0.00 44.07 3.71
129 130 2.159327 TTCGACGAGAAAGGGTTTCC 57.841 50.000 0.00 0.00 40.54 3.13
130 131 3.323243 TCATTCGACGAGAAAGGGTTTC 58.677 45.455 0.00 0.00 42.91 2.78
131 132 3.396260 TCATTCGACGAGAAAGGGTTT 57.604 42.857 0.00 0.00 42.91 3.27
132 133 3.262420 CATCATTCGACGAGAAAGGGTT 58.738 45.455 0.00 0.00 42.91 4.11
133 134 2.233922 ACATCATTCGACGAGAAAGGGT 59.766 45.455 0.00 0.00 42.91 4.34
134 135 2.860735 GACATCATTCGACGAGAAAGGG 59.139 50.000 0.00 0.00 42.91 3.95
135 136 2.531912 CGACATCATTCGACGAGAAAGG 59.468 50.000 0.00 0.00 42.91 3.11
136 137 2.035342 GCGACATCATTCGACGAGAAAG 60.035 50.000 0.00 0.00 42.91 2.62
137 138 1.917955 GCGACATCATTCGACGAGAAA 59.082 47.619 0.00 0.00 42.91 2.52
138 139 1.545759 GCGACATCATTCGACGAGAA 58.454 50.000 0.00 0.00 41.78 2.87
139 140 0.248498 GGCGACATCATTCGACGAGA 60.248 55.000 0.00 0.00 41.78 4.04
140 141 2.208074 GGCGACATCATTCGACGAG 58.792 57.895 0.00 0.00 41.78 4.18
141 142 4.395080 GGCGACATCATTCGACGA 57.605 55.556 0.00 0.00 41.78 4.20
144 145 1.802069 TGTTTGGCGACATCATTCGA 58.198 45.000 0.00 0.00 41.78 3.71
145 146 2.241722 GTTGTTTGGCGACATCATTCG 58.758 47.619 0.00 0.00 42.32 3.34
146 147 2.979813 GTGTTGTTTGGCGACATCATTC 59.020 45.455 0.00 0.00 42.91 2.67
147 148 2.360483 TGTGTTGTTTGGCGACATCATT 59.640 40.909 0.00 0.00 42.91 2.57
148 149 1.952990 TGTGTTGTTTGGCGACATCAT 59.047 42.857 0.00 0.00 42.91 2.45
149 150 1.333308 CTGTGTTGTTTGGCGACATCA 59.667 47.619 0.00 0.00 42.91 3.07
150 151 1.601903 TCTGTGTTGTTTGGCGACATC 59.398 47.619 0.00 0.00 42.91 3.06
151 152 1.603802 CTCTGTGTTGTTTGGCGACAT 59.396 47.619 0.00 0.00 42.91 3.06
152 153 1.013596 CTCTGTGTTGTTTGGCGACA 58.986 50.000 0.00 0.00 39.08 4.35
153 154 0.307760 CCTCTGTGTTGTTTGGCGAC 59.692 55.000 0.00 0.00 0.00 5.19
154 155 0.107410 ACCTCTGTGTTGTTTGGCGA 60.107 50.000 0.00 0.00 0.00 5.54
155 156 0.029300 CACCTCTGTGTTGTTTGGCG 59.971 55.000 0.00 0.00 37.72 5.69
156 157 1.388547 TCACCTCTGTGTTGTTTGGC 58.611 50.000 0.00 0.00 43.26 4.52
157 158 4.097741 TGAATTCACCTCTGTGTTGTTTGG 59.902 41.667 3.38 0.00 43.26 3.28
158 159 5.163622 ACTGAATTCACCTCTGTGTTGTTTG 60.164 40.000 3.38 0.00 43.26 2.93
159 160 4.949856 ACTGAATTCACCTCTGTGTTGTTT 59.050 37.500 3.38 0.00 43.26 2.83
160 161 4.526970 ACTGAATTCACCTCTGTGTTGTT 58.473 39.130 3.38 0.00 43.26 2.83
161 162 4.156455 ACTGAATTCACCTCTGTGTTGT 57.844 40.909 3.38 0.00 43.26 3.32
162 163 5.505173 AAACTGAATTCACCTCTGTGTTG 57.495 39.130 3.38 0.00 43.26 3.33
163 164 6.530019 AAAAACTGAATTCACCTCTGTGTT 57.470 33.333 3.38 2.65 43.26 3.32
164 165 6.238759 GCTAAAAACTGAATTCACCTCTGTGT 60.239 38.462 3.38 0.00 43.26 3.72
165 166 6.145535 GCTAAAAACTGAATTCACCTCTGTG 58.854 40.000 3.38 0.00 44.18 3.66
166 167 5.827797 TGCTAAAAACTGAATTCACCTCTGT 59.172 36.000 3.38 0.00 0.00 3.41
167 168 6.317789 TGCTAAAAACTGAATTCACCTCTG 57.682 37.500 3.38 0.00 0.00 3.35
168 169 6.491403 ACATGCTAAAAACTGAATTCACCTCT 59.509 34.615 3.38 0.00 0.00 3.69
169 170 6.681777 ACATGCTAAAAACTGAATTCACCTC 58.318 36.000 3.38 0.00 0.00 3.85
170 171 6.655078 ACATGCTAAAAACTGAATTCACCT 57.345 33.333 3.38 0.00 0.00 4.00
171 172 6.346838 GCAACATGCTAAAAACTGAATTCACC 60.347 38.462 3.38 0.00 40.96 4.02
172 173 6.584056 GCAACATGCTAAAAACTGAATTCAC 58.416 36.000 3.38 0.00 40.96 3.18
173 174 6.768029 GCAACATGCTAAAAACTGAATTCA 57.232 33.333 8.12 8.12 40.96 2.57
188 189 2.294233 TCCAGAACTCAAAGCAACATGC 59.706 45.455 0.00 0.00 45.46 4.06
189 190 4.037208 ACTTCCAGAACTCAAAGCAACATG 59.963 41.667 0.00 0.00 0.00 3.21
190 191 4.210331 ACTTCCAGAACTCAAAGCAACAT 58.790 39.130 0.00 0.00 0.00 2.71
191 192 3.620488 ACTTCCAGAACTCAAAGCAACA 58.380 40.909 0.00 0.00 0.00 3.33
192 193 5.751243 TTACTTCCAGAACTCAAAGCAAC 57.249 39.130 0.00 0.00 0.00 4.17
193 194 7.121168 CCATATTACTTCCAGAACTCAAAGCAA 59.879 37.037 0.00 0.00 0.00 3.91
194 195 6.599244 CCATATTACTTCCAGAACTCAAAGCA 59.401 38.462 0.00 0.00 0.00 3.91
195 196 6.038714 CCCATATTACTTCCAGAACTCAAAGC 59.961 42.308 0.00 0.00 0.00 3.51
196 197 7.338710 TCCCATATTACTTCCAGAACTCAAAG 58.661 38.462 0.00 0.00 0.00 2.77
197 198 7.182026 TCTCCCATATTACTTCCAGAACTCAAA 59.818 37.037 0.00 0.00 0.00 2.69
198 199 6.672218 TCTCCCATATTACTTCCAGAACTCAA 59.328 38.462 0.00 0.00 0.00 3.02
199 200 6.202331 TCTCCCATATTACTTCCAGAACTCA 58.798 40.000 0.00 0.00 0.00 3.41
200 201 6.732896 TCTCCCATATTACTTCCAGAACTC 57.267 41.667 0.00 0.00 0.00 3.01
201 202 6.846505 TCATCTCCCATATTACTTCCAGAACT 59.153 38.462 0.00 0.00 0.00 3.01
202 203 7.067496 TCATCTCCCATATTACTTCCAGAAC 57.933 40.000 0.00 0.00 0.00 3.01
203 204 6.270927 CCTCATCTCCCATATTACTTCCAGAA 59.729 42.308 0.00 0.00 0.00 3.02
204 205 5.782331 CCTCATCTCCCATATTACTTCCAGA 59.218 44.000 0.00 0.00 0.00 3.86
205 206 5.782331 TCCTCATCTCCCATATTACTTCCAG 59.218 44.000 0.00 0.00 0.00 3.86
206 207 5.726560 TCCTCATCTCCCATATTACTTCCA 58.273 41.667 0.00 0.00 0.00 3.53
207 208 6.498651 TCTTCCTCATCTCCCATATTACTTCC 59.501 42.308 0.00 0.00 0.00 3.46
208 209 7.546250 TCTTCCTCATCTCCCATATTACTTC 57.454 40.000 0.00 0.00 0.00 3.01
209 210 7.937700 TTCTTCCTCATCTCCCATATTACTT 57.062 36.000 0.00 0.00 0.00 2.24
210 211 7.937700 TTTCTTCCTCATCTCCCATATTACT 57.062 36.000 0.00 0.00 0.00 2.24
211 212 8.980481 TTTTTCTTCCTCATCTCCCATATTAC 57.020 34.615 0.00 0.00 0.00 1.89
213 214 9.804977 CTATTTTTCTTCCTCATCTCCCATATT 57.195 33.333 0.00 0.00 0.00 1.28
214 215 7.887495 GCTATTTTTCTTCCTCATCTCCCATAT 59.113 37.037 0.00 0.00 0.00 1.78
215 216 7.147320 TGCTATTTTTCTTCCTCATCTCCCATA 60.147 37.037 0.00 0.00 0.00 2.74
216 217 6.067350 GCTATTTTTCTTCCTCATCTCCCAT 58.933 40.000 0.00 0.00 0.00 4.00
217 218 5.044919 TGCTATTTTTCTTCCTCATCTCCCA 60.045 40.000 0.00 0.00 0.00 4.37
218 219 5.440610 TGCTATTTTTCTTCCTCATCTCCC 58.559 41.667 0.00 0.00 0.00 4.30
219 220 5.008514 GCTGCTATTTTTCTTCCTCATCTCC 59.991 44.000 0.00 0.00 0.00 3.71
220 221 5.821995 AGCTGCTATTTTTCTTCCTCATCTC 59.178 40.000 0.00 0.00 0.00 2.75
221 222 5.753716 AGCTGCTATTTTTCTTCCTCATCT 58.246 37.500 0.00 0.00 0.00 2.90
222 223 6.204495 CCTAGCTGCTATTTTTCTTCCTCATC 59.796 42.308 10.23 0.00 0.00 2.92
223 224 6.060788 CCTAGCTGCTATTTTTCTTCCTCAT 58.939 40.000 10.23 0.00 0.00 2.90
224 225 5.189736 TCCTAGCTGCTATTTTTCTTCCTCA 59.810 40.000 10.23 0.00 0.00 3.86
225 226 5.675538 TCCTAGCTGCTATTTTTCTTCCTC 58.324 41.667 10.23 0.00 0.00 3.71
226 227 5.700402 TCCTAGCTGCTATTTTTCTTCCT 57.300 39.130 10.23 0.00 0.00 3.36
227 228 5.471797 GGATCCTAGCTGCTATTTTTCTTCC 59.528 44.000 10.23 6.52 0.00 3.46
228 229 5.178438 CGGATCCTAGCTGCTATTTTTCTTC 59.822 44.000 10.23 1.50 0.00 2.87
229 230 5.059833 CGGATCCTAGCTGCTATTTTTCTT 58.940 41.667 10.23 0.00 0.00 2.52
230 231 4.101741 ACGGATCCTAGCTGCTATTTTTCT 59.898 41.667 10.23 0.00 0.00 2.52
231 232 4.381411 ACGGATCCTAGCTGCTATTTTTC 58.619 43.478 10.23 5.37 0.00 2.29
232 233 4.423625 ACGGATCCTAGCTGCTATTTTT 57.576 40.909 10.23 0.00 0.00 1.94
233 234 4.423625 AACGGATCCTAGCTGCTATTTT 57.576 40.909 10.23 0.00 0.00 1.82
234 235 4.423625 AAACGGATCCTAGCTGCTATTT 57.576 40.909 10.23 3.27 0.00 1.40
235 236 4.130118 CAAAACGGATCCTAGCTGCTATT 58.870 43.478 10.23 0.00 0.00 1.73
236 237 3.388024 TCAAAACGGATCCTAGCTGCTAT 59.612 43.478 10.23 0.00 0.00 2.97
237 238 2.764010 TCAAAACGGATCCTAGCTGCTA 59.236 45.455 10.75 9.34 0.00 3.49
238 239 1.555075 TCAAAACGGATCCTAGCTGCT 59.445 47.619 10.75 7.57 0.00 4.24
239 240 2.024176 TCAAAACGGATCCTAGCTGC 57.976 50.000 10.75 0.00 0.00 5.25
240 241 6.487103 GTTTTATCAAAACGGATCCTAGCTG 58.513 40.000 10.75 2.41 41.04 4.24
241 242 6.679327 GTTTTATCAAAACGGATCCTAGCT 57.321 37.500 10.75 0.00 41.04 3.32
258 259 9.784531 CCTCTACAATCATGACCTATGTTTTAT 57.215 33.333 0.00 0.00 38.01 1.40
259 260 7.715249 GCCTCTACAATCATGACCTATGTTTTA 59.285 37.037 0.00 0.00 38.01 1.52
260 261 6.543831 GCCTCTACAATCATGACCTATGTTTT 59.456 38.462 0.00 0.00 38.01 2.43
261 262 6.058183 GCCTCTACAATCATGACCTATGTTT 58.942 40.000 0.00 0.00 38.01 2.83
262 263 5.130975 TGCCTCTACAATCATGACCTATGTT 59.869 40.000 0.00 0.00 38.01 2.71
263 264 4.655649 TGCCTCTACAATCATGACCTATGT 59.344 41.667 0.00 4.07 38.01 2.29
264 265 5.219343 TGCCTCTACAATCATGACCTATG 57.781 43.478 0.00 0.00 38.17 2.23
265 266 5.894298 TTGCCTCTACAATCATGACCTAT 57.106 39.130 0.00 0.00 0.00 2.57
266 267 5.692115 TTTGCCTCTACAATCATGACCTA 57.308 39.130 0.00 0.00 0.00 3.08
267 268 4.574674 TTTGCCTCTACAATCATGACCT 57.425 40.909 0.00 0.00 0.00 3.85
268 269 5.841957 AATTTGCCTCTACAATCATGACC 57.158 39.130 0.00 0.00 0.00 4.02
269 270 7.433425 GCTTAAATTTGCCTCTACAATCATGAC 59.567 37.037 0.00 0.00 0.00 3.06
270 271 7.340232 AGCTTAAATTTGCCTCTACAATCATGA 59.660 33.333 0.00 0.00 0.00 3.07
271 272 7.486647 AGCTTAAATTTGCCTCTACAATCATG 58.513 34.615 0.00 0.00 0.00 3.07
272 273 7.651027 AGCTTAAATTTGCCTCTACAATCAT 57.349 32.000 0.00 0.00 0.00 2.45
273 274 7.201732 GCTAGCTTAAATTTGCCTCTACAATCA 60.202 37.037 7.70 0.00 0.00 2.57
274 275 7.135467 GCTAGCTTAAATTTGCCTCTACAATC 58.865 38.462 7.70 0.00 0.00 2.67
275 276 6.603201 TGCTAGCTTAAATTTGCCTCTACAAT 59.397 34.615 17.23 0.00 0.00 2.71
276 277 5.943416 TGCTAGCTTAAATTTGCCTCTACAA 59.057 36.000 17.23 0.00 0.00 2.41
277 278 5.354234 GTGCTAGCTTAAATTTGCCTCTACA 59.646 40.000 17.23 0.00 0.00 2.74
278 279 5.502544 CGTGCTAGCTTAAATTTGCCTCTAC 60.503 44.000 17.23 0.00 0.00 2.59
279 280 4.570772 CGTGCTAGCTTAAATTTGCCTCTA 59.429 41.667 17.23 0.00 0.00 2.43
280 281 3.375299 CGTGCTAGCTTAAATTTGCCTCT 59.625 43.478 17.23 0.00 0.00 3.69
281 282 3.127030 ACGTGCTAGCTTAAATTTGCCTC 59.873 43.478 17.23 0.00 0.00 4.70
282 283 3.081804 ACGTGCTAGCTTAAATTTGCCT 58.918 40.909 17.23 0.00 0.00 4.75
283 284 3.487563 ACGTGCTAGCTTAAATTTGCC 57.512 42.857 17.23 0.00 0.00 4.52
284 285 4.965062 TGTACGTGCTAGCTTAAATTTGC 58.035 39.130 17.23 0.00 0.00 3.68
285 286 9.716507 AAATATGTACGTGCTAGCTTAAATTTG 57.283 29.630 17.23 0.00 0.00 2.32
289 290 9.806203 TCTAAAATATGTACGTGCTAGCTTAAA 57.194 29.630 17.23 0.13 0.00 1.52
290 291 9.976511 ATCTAAAATATGTACGTGCTAGCTTAA 57.023 29.630 17.23 0.00 0.00 1.85
291 292 9.622004 GATCTAAAATATGTACGTGCTAGCTTA 57.378 33.333 17.23 1.69 0.00 3.09
292 293 8.141909 TGATCTAAAATATGTACGTGCTAGCTT 58.858 33.333 17.23 2.72 0.00 3.74
293 294 7.658261 TGATCTAAAATATGTACGTGCTAGCT 58.342 34.615 17.23 0.00 0.00 3.32
294 295 7.869016 TGATCTAAAATATGTACGTGCTAGC 57.131 36.000 8.10 8.10 0.00 3.42
295 296 8.428536 GCTTGATCTAAAATATGTACGTGCTAG 58.571 37.037 4.97 0.00 0.00 3.42
296 297 8.141909 AGCTTGATCTAAAATATGTACGTGCTA 58.858 33.333 4.97 0.00 0.00 3.49
297 298 6.986817 AGCTTGATCTAAAATATGTACGTGCT 59.013 34.615 4.97 0.00 0.00 4.40
298 299 7.178712 AGCTTGATCTAAAATATGTACGTGC 57.821 36.000 0.00 0.00 0.00 5.34
359 360 8.664798 GTGCCAAAAATTTTACTCCAATATTCC 58.335 33.333 3.34 0.00 0.00 3.01
362 363 7.823799 CCAGTGCCAAAAATTTTACTCCAATAT 59.176 33.333 3.34 0.00 0.00 1.28
367 368 5.208463 TCCAGTGCCAAAAATTTTACTCC 57.792 39.130 3.34 0.00 0.00 3.85
368 369 7.728847 AAATCCAGTGCCAAAAATTTTACTC 57.271 32.000 3.34 0.00 0.00 2.59
369 370 7.555914 ACAAAATCCAGTGCCAAAAATTTTACT 59.444 29.630 3.34 1.02 0.00 2.24
370 371 7.702386 ACAAAATCCAGTGCCAAAAATTTTAC 58.298 30.769 3.34 0.00 0.00 2.01
372 373 6.772360 ACAAAATCCAGTGCCAAAAATTTT 57.228 29.167 0.00 0.00 0.00 1.82
373 374 6.772360 AACAAAATCCAGTGCCAAAAATTT 57.228 29.167 0.00 0.00 0.00 1.82
374 375 6.772360 AAACAAAATCCAGTGCCAAAAATT 57.228 29.167 0.00 0.00 0.00 1.82
375 376 6.825721 TGTAAACAAAATCCAGTGCCAAAAAT 59.174 30.769 0.00 0.00 0.00 1.82
376 377 6.173339 TGTAAACAAAATCCAGTGCCAAAAA 58.827 32.000 0.00 0.00 0.00 1.94
392 393 7.618502 TGAGTTCTAGCAAAACTGTAAACAA 57.381 32.000 0.32 0.00 37.10 2.83
393 394 7.715249 AGATGAGTTCTAGCAAAACTGTAAACA 59.285 33.333 0.32 0.00 37.10 2.83
394 395 8.089115 AGATGAGTTCTAGCAAAACTGTAAAC 57.911 34.615 0.32 0.00 37.10 2.01
395 396 9.424319 CTAGATGAGTTCTAGCAAAACTGTAAA 57.576 33.333 0.32 0.00 45.63 2.01
396 397 8.988064 CTAGATGAGTTCTAGCAAAACTGTAA 57.012 34.615 0.32 0.00 45.63 2.41
431 432 9.860898 GCTATAAAAAGTGAATGAGACCAAATT 57.139 29.630 0.00 0.00 0.00 1.82
432 433 8.470002 GGCTATAAAAAGTGAATGAGACCAAAT 58.530 33.333 0.00 0.00 0.00 2.32
433 434 7.450014 TGGCTATAAAAAGTGAATGAGACCAAA 59.550 33.333 0.00 0.00 0.00 3.28
434 435 6.945435 TGGCTATAAAAAGTGAATGAGACCAA 59.055 34.615 0.00 0.00 0.00 3.67
435 436 6.480763 TGGCTATAAAAAGTGAATGAGACCA 58.519 36.000 0.00 0.00 0.00 4.02
436 437 7.573968 ATGGCTATAAAAAGTGAATGAGACC 57.426 36.000 0.00 0.00 0.00 3.85
437 438 7.917505 CCAATGGCTATAAAAAGTGAATGAGAC 59.082 37.037 0.00 0.00 0.00 3.36
438 439 7.833682 TCCAATGGCTATAAAAAGTGAATGAGA 59.166 33.333 0.00 0.00 0.00 3.27
439 440 7.999679 TCCAATGGCTATAAAAAGTGAATGAG 58.000 34.615 0.00 0.00 0.00 2.90
440 441 7.953005 TCCAATGGCTATAAAAAGTGAATGA 57.047 32.000 0.00 0.00 0.00 2.57
441 442 8.199449 ACATCCAATGGCTATAAAAAGTGAATG 58.801 33.333 0.00 0.00 33.60 2.67
442 443 8.199449 CACATCCAATGGCTATAAAAAGTGAAT 58.801 33.333 0.00 0.00 33.60 2.57
443 444 7.395772 TCACATCCAATGGCTATAAAAAGTGAA 59.604 33.333 0.00 0.00 33.60 3.18
444 445 6.889177 TCACATCCAATGGCTATAAAAAGTGA 59.111 34.615 0.00 0.00 33.60 3.41
445 446 7.099266 TCACATCCAATGGCTATAAAAAGTG 57.901 36.000 0.00 0.00 33.60 3.16
446 447 7.685155 GCATCACATCCAATGGCTATAAAAAGT 60.685 37.037 0.00 0.00 33.60 2.66
447 448 6.643770 GCATCACATCCAATGGCTATAAAAAG 59.356 38.462 0.00 0.00 33.60 2.27
448 449 6.324512 AGCATCACATCCAATGGCTATAAAAA 59.675 34.615 0.00 0.00 33.60 1.94
449 450 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
450 451 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
451 452 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
452 453 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
453 454 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
454 455 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
455 456 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
456 457 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
457 458 6.404403 GCATCTTATAGCATCACATCCAATGG 60.404 42.308 0.00 0.00 33.60 3.16
458 459 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
459 460 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
460 461 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
461 462 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
462 463 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
463 464 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
464 465 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
465 466 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
466 467 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
467 468 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
468 469 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
469 470 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
470 471 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
471 472 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
472 473 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
473 474 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
474 475 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
475 476 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
476 477 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
477 478 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
478 479 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
479 480 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
480 481 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
481 482 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
482 483 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
483 484 1.373590 AAACCCACGTCAGCACACAC 61.374 55.000 0.00 0.00 0.00 3.82
484 485 0.678366 AAAACCCACGTCAGCACACA 60.678 50.000 0.00 0.00 0.00 3.72
485 486 1.301423 TAAAACCCACGTCAGCACAC 58.699 50.000 0.00 0.00 0.00 3.82
486 487 2.147958 GATAAAACCCACGTCAGCACA 58.852 47.619 0.00 0.00 0.00 4.57
487 488 1.467342 GGATAAAACCCACGTCAGCAC 59.533 52.381 0.00 0.00 0.00 4.40
488 489 1.816074 GGATAAAACCCACGTCAGCA 58.184 50.000 0.00 0.00 0.00 4.41
489 490 0.725117 CGGATAAAACCCACGTCAGC 59.275 55.000 0.00 0.00 0.00 4.26
490 491 2.088950 ACGGATAAAACCCACGTCAG 57.911 50.000 0.00 0.00 31.39 3.51
491 492 2.037511 AGAACGGATAAAACCCACGTCA 59.962 45.455 0.00 0.00 36.69 4.35
492 493 2.691927 AGAACGGATAAAACCCACGTC 58.308 47.619 0.00 0.00 36.69 4.34
493 494 2.809696 CAAGAACGGATAAAACCCACGT 59.190 45.455 0.00 0.00 39.74 4.49
494 495 2.809696 ACAAGAACGGATAAAACCCACG 59.190 45.455 0.00 0.00 0.00 4.94
495 496 4.841443 AACAAGAACGGATAAAACCCAC 57.159 40.909 0.00 0.00 0.00 4.61
496 497 5.855740 AAAACAAGAACGGATAAAACCCA 57.144 34.783 0.00 0.00 0.00 4.51
497 498 8.645730 TTTAAAAACAAGAACGGATAAAACCC 57.354 30.769 0.00 0.00 0.00 4.11
573 574 0.253894 GGGGGCCGAGCTAGTAAAAA 59.746 55.000 0.00 0.00 0.00 1.94
593 594 2.700773 GCAAGACCCATGCGGAACC 61.701 63.158 7.17 0.00 33.57 3.62
594 595 2.877691 GCAAGACCCATGCGGAAC 59.122 61.111 7.17 2.01 33.57 3.62
605 606 1.531522 CGTTGCTGCAAACGCAAGAC 61.532 55.000 17.80 1.48 46.81 3.01
606 607 1.298264 CGTTGCTGCAAACGCAAGA 60.298 52.632 17.80 0.00 46.81 3.02
607 608 3.214412 CGTTGCTGCAAACGCAAG 58.786 55.556 17.80 3.83 46.81 4.01
637 638 2.742372 CTAGTTGCCGCAAGCCGT 60.742 61.111 5.91 0.00 42.71 5.68
657 658 3.820843 CCCCCTGCCATACCACCC 61.821 72.222 0.00 0.00 0.00 4.61
658 659 2.694616 TCCCCCTGCCATACCACC 60.695 66.667 0.00 0.00 0.00 4.61
660 661 0.328450 ATTCTCCCCCTGCCATACCA 60.328 55.000 0.00 0.00 0.00 3.25
673 704 1.152368 CCTCCATGGCCCATTCTCC 59.848 63.158 6.96 0.00 0.00 3.71
762 799 5.336372 CCAAAAACATCTCTCTCTCTCTCGT 60.336 44.000 0.00 0.00 0.00 4.18
764 801 4.869861 GCCAAAAACATCTCTCTCTCTCTC 59.130 45.833 0.00 0.00 0.00 3.20
765 802 4.620332 CGCCAAAAACATCTCTCTCTCTCT 60.620 45.833 0.00 0.00 0.00 3.10
766 803 3.616379 CGCCAAAAACATCTCTCTCTCTC 59.384 47.826 0.00 0.00 0.00 3.20
767 804 3.594134 CGCCAAAAACATCTCTCTCTCT 58.406 45.455 0.00 0.00 0.00 3.10
768 805 2.675348 CCGCCAAAAACATCTCTCTCTC 59.325 50.000 0.00 0.00 0.00 3.20
769 806 2.616510 CCCGCCAAAAACATCTCTCTCT 60.617 50.000 0.00 0.00 0.00 3.10
809 852 2.213499 CCTTATCCATTCGTCCACAGC 58.787 52.381 0.00 0.00 0.00 4.40
835 878 2.126189 GCCACGACGTACCCACTC 60.126 66.667 0.00 0.00 0.00 3.51
948 993 2.356433 GGAGGCTTATCCGCGAGC 60.356 66.667 8.23 8.63 40.77 5.03
988 1033 2.034999 GGCCATCGGGGTTGTCAA 59.965 61.111 0.00 0.00 39.65 3.18
989 1034 2.933287 AGGCCATCGGGGTTGTCA 60.933 61.111 5.01 0.00 39.65 3.58
990 1035 2.124695 GAGGCCATCGGGGTTGTC 60.125 66.667 5.01 0.00 39.65 3.18
992 1037 4.506255 GGGAGGCCATCGGGGTTG 62.506 72.222 5.01 0.00 39.65 3.77
1041 1094 0.894184 TCTCGAACGCCTTGTCCTCT 60.894 55.000 0.00 0.00 0.00 3.69
1408 1461 8.475639 TCCGAGCTTTCTTTCTTGTACTTATAT 58.524 33.333 0.00 0.00 0.00 0.86
1409 1462 7.833786 TCCGAGCTTTCTTTCTTGTACTTATA 58.166 34.615 0.00 0.00 0.00 0.98
1410 1463 6.698380 TCCGAGCTTTCTTTCTTGTACTTAT 58.302 36.000 0.00 0.00 0.00 1.73
1411 1464 6.092955 TCCGAGCTTTCTTTCTTGTACTTA 57.907 37.500 0.00 0.00 0.00 2.24
1412 1465 4.957296 TCCGAGCTTTCTTTCTTGTACTT 58.043 39.130 0.00 0.00 0.00 2.24
1413 1466 4.602340 TCCGAGCTTTCTTTCTTGTACT 57.398 40.909 0.00 0.00 0.00 2.73
1414 1467 4.031878 CGATCCGAGCTTTCTTTCTTGTAC 59.968 45.833 0.00 0.00 0.00 2.90
1464 1517 1.862806 GTCAACAAGACGCAGAGCC 59.137 57.895 0.00 0.00 37.53 4.70
1472 1525 0.037605 ACCCCGATCGTCAACAAGAC 60.038 55.000 15.09 0.00 44.02 3.01
1477 1530 3.186047 CGCACCCCGATCGTCAAC 61.186 66.667 15.09 0.00 40.02 3.18
1499 1552 3.058160 GAACAGCCTGCACGCCAT 61.058 61.111 3.92 0.00 0.00 4.40
2054 2124 1.982395 AGATGAGGAACGGACGGCA 60.982 57.895 0.00 0.00 0.00 5.69
2107 2183 4.645762 TTGCAACAGTCAGCAAATACAA 57.354 36.364 10.14 0.00 46.65 2.41
2135 2211 4.142447 CCGGGTCTGTGATCGTATATAAGG 60.142 50.000 0.00 0.00 0.00 2.69
2173 2255 3.314080 GGCCGCTGCTAATTACATTTACA 59.686 43.478 0.00 0.00 37.74 2.41
2281 2363 6.799925 GGGTGTAATTTATTCACGTCAAAGTG 59.200 38.462 0.00 0.00 43.11 3.16
2306 2396 3.804688 CTCATACGAGCAGAGACATACG 58.195 50.000 0.00 0.00 31.00 3.06
2325 2415 4.082571 ACAGTGAAATTAAGGTGCATGCTC 60.083 41.667 20.33 15.68 0.00 4.26
2357 2447 4.371855 TGAGCGATGATTAGTTCGTTCT 57.628 40.909 9.82 0.00 43.31 3.01
2435 4282 7.201609 GCCATTTCTTCGACATGTAATAAGTGA 60.202 37.037 0.00 0.00 0.00 3.41
2436 4283 6.907212 GCCATTTCTTCGACATGTAATAAGTG 59.093 38.462 0.00 0.00 0.00 3.16
2446 4293 5.028549 AGATACAGCCATTTCTTCGACAT 57.971 39.130 0.00 0.00 0.00 3.06
2525 4373 1.232792 TTTTTGGAGGGCAGGTGCT 59.767 52.632 1.26 0.00 41.70 4.40
2599 4492 6.156602 TCCCATTGGTATTTCCTTTCGTAGTA 59.843 38.462 1.20 0.00 37.07 1.82
2636 4529 4.583073 GGTGTTTTCTCCTGTTGTAATGGT 59.417 41.667 0.00 0.00 0.00 3.55
2651 4544 5.440685 CAAATCTGTCGTGTAGGTGTTTTC 58.559 41.667 0.00 0.00 0.00 2.29
2738 4632 3.753272 TCAACTTTGCATCAGTCTTAGCC 59.247 43.478 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.