Multiple sequence alignment - TraesCS4A01G452500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G452500 chr4A 100.000 3525 0 0 1 3525 717652048 717648524 0.000000e+00 6510
1 TraesCS4A01G452500 chr7D 88.482 1884 164 29 813 2662 16905818 16903954 0.000000e+00 2228
2 TraesCS4A01G452500 chr7D 93.852 732 32 7 21 751 16907190 16906471 0.000000e+00 1090
3 TraesCS4A01G452500 chr7D 83.951 486 44 17 2851 3312 16903801 16903326 5.400000e-118 435
4 TraesCS4A01G452500 chr7A 92.098 1101 79 5 976 2075 16129252 16128159 0.000000e+00 1544
5 TraesCS4A01G452500 chr7A 91.469 715 50 6 21 735 16156661 16155958 0.000000e+00 972
6 TraesCS4A01G452500 chr5A 81.953 338 61 0 1463 1800 622363411 622363748 1.600000e-73 287
7 TraesCS4A01G452500 chr2A 79.841 377 71 4 993 1365 749566783 749566408 1.610000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G452500 chr4A 717648524 717652048 3524 True 6510 6510 100.000000 1 3525 1 chr4A.!!$R1 3524
1 TraesCS4A01G452500 chr7D 16903326 16907190 3864 True 1251 2228 88.761667 21 3312 3 chr7D.!!$R1 3291
2 TraesCS4A01G452500 chr7A 16128159 16129252 1093 True 1544 1544 92.098000 976 2075 1 chr7A.!!$R1 1099
3 TraesCS4A01G452500 chr7A 16155958 16156661 703 True 972 972 91.469000 21 735 1 chr7A.!!$R2 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
766 767 0.249031 GTTCAAGCTGTGTGGGTTGC 60.249 55.0 0.0 0.0 42.32 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2696 3332 0.03918 TCCCAAGAGTAGCAGACCGA 59.961 55.0 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 0.450983 GGACTACACGAGGTCCTTCG 59.549 60.000 0.00 0.80 45.99 3.79
194 195 2.708255 GAGTACCGTCCGCTCTCG 59.292 66.667 0.00 0.00 0.00 4.04
410 411 0.542938 TGCTGTCAGGTAGTCTGCCT 60.543 55.000 3.18 3.18 43.06 4.75
632 633 6.093771 TCGTCTTTAGTTTCTCTAGCTACCAG 59.906 42.308 0.00 0.00 0.00 4.00
667 668 4.021916 AGTATGTTGCGACCTACTACCTT 58.978 43.478 17.63 0.00 36.04 3.50
682 683 9.939802 ACCTACTACCTTTGTTTCTAAATGTAG 57.060 33.333 10.22 10.22 41.00 2.74
712 713 2.482142 GGTAGTTCAATCTGAGAGCGGG 60.482 54.545 0.00 0.00 0.00 6.13
726 727 2.064014 GAGCGGGCGGTATTTATGTAC 58.936 52.381 0.00 0.00 0.00 2.90
754 755 7.770801 AAAAAGACATTTTGGTAGTTCAAGC 57.229 32.000 0.00 0.00 39.73 4.01
755 756 6.715347 AAAGACATTTTGGTAGTTCAAGCT 57.285 33.333 0.00 0.00 0.00 3.74
756 757 5.695851 AGACATTTTGGTAGTTCAAGCTG 57.304 39.130 0.00 0.00 0.00 4.24
757 758 5.133221 AGACATTTTGGTAGTTCAAGCTGT 58.867 37.500 0.00 0.00 0.00 4.40
758 759 5.009010 AGACATTTTGGTAGTTCAAGCTGTG 59.991 40.000 0.00 0.00 0.00 3.66
759 760 4.644685 ACATTTTGGTAGTTCAAGCTGTGT 59.355 37.500 0.00 0.00 0.00 3.72
760 761 4.630894 TTTTGGTAGTTCAAGCTGTGTG 57.369 40.909 0.00 0.00 0.00 3.82
762 763 1.202758 TGGTAGTTCAAGCTGTGTGGG 60.203 52.381 0.00 0.00 0.00 4.61
763 764 1.202770 GGTAGTTCAAGCTGTGTGGGT 60.203 52.381 0.00 0.00 0.00 4.51
764 765 2.572290 GTAGTTCAAGCTGTGTGGGTT 58.428 47.619 0.00 0.00 0.00 4.11
766 767 0.249031 GTTCAAGCTGTGTGGGTTGC 60.249 55.000 0.00 0.00 42.32 4.17
767 768 1.391157 TTCAAGCTGTGTGGGTTGCC 61.391 55.000 0.00 0.00 42.32 4.52
768 769 2.126596 CAAGCTGTGTGGGTTGCCA 61.127 57.895 0.00 0.00 37.76 4.92
770 771 2.519302 GCTGTGTGGGTTGCCAGT 60.519 61.111 0.00 0.00 0.00 4.00
772 773 2.123939 TGTGTGGGTTGCCAGTGG 60.124 61.111 4.20 4.20 0.00 4.00
773 774 2.123897 GTGTGGGTTGCCAGTGGT 60.124 61.111 11.74 0.00 0.00 4.16
775 776 1.756172 TGTGGGTTGCCAGTGGTTG 60.756 57.895 11.74 0.00 0.00 3.77
776 777 1.454847 GTGGGTTGCCAGTGGTTGA 60.455 57.895 11.74 0.00 0.00 3.18
777 778 1.152777 TGGGTTGCCAGTGGTTGAG 60.153 57.895 11.74 0.00 0.00 3.02
778 779 2.564721 GGGTTGCCAGTGGTTGAGC 61.565 63.158 11.74 6.62 0.00 4.26
779 780 2.564721 GGTTGCCAGTGGTTGAGCC 61.565 63.158 11.74 3.16 37.90 4.70
780 781 2.203480 TTGCCAGTGGTTGAGCCC 60.203 61.111 11.74 0.00 36.04 5.19
782 783 2.203480 GCCAGTGGTTGAGCCCAA 60.203 61.111 11.74 0.00 35.92 4.12
784 785 1.455849 CCAGTGGTTGAGCCCAAGA 59.544 57.895 0.00 0.00 35.92 3.02
786 787 1.171308 CAGTGGTTGAGCCCAAGATG 58.829 55.000 0.00 0.00 35.92 2.90
787 788 1.067295 AGTGGTTGAGCCCAAGATGA 58.933 50.000 0.00 0.00 35.92 2.92
788 789 1.004044 AGTGGTTGAGCCCAAGATGAG 59.996 52.381 0.00 0.00 35.92 2.90
789 790 0.322816 TGGTTGAGCCCAAGATGAGC 60.323 55.000 0.00 0.00 36.04 4.26
790 791 1.034292 GGTTGAGCCCAAGATGAGCC 61.034 60.000 0.00 0.00 32.06 4.70
791 792 1.034292 GTTGAGCCCAAGATGAGCCC 61.034 60.000 0.00 0.00 32.06 5.19
792 793 2.203126 GAGCCCAAGATGAGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
794 795 4.883354 GCCCAAGATGAGCCCGGG 62.883 72.222 19.09 19.09 40.11 5.73
795 796 4.195334 CCCAAGATGAGCCCGGGG 62.195 72.222 25.28 9.31 32.88 5.73
796 797 4.195334 CCAAGATGAGCCCGGGGG 62.195 72.222 25.28 8.38 38.57 5.40
797 798 3.089874 CAAGATGAGCCCGGGGGA 61.090 66.667 25.28 0.00 37.50 4.81
800 801 4.880426 GATGAGCCCGGGGGAGGA 62.880 72.222 25.28 0.00 37.50 3.71
801 802 4.888325 ATGAGCCCGGGGGAGGAG 62.888 72.222 25.28 0.00 37.50 3.69
810 1403 2.671682 GGGGAGGAGCAAGTGACC 59.328 66.667 0.00 0.00 0.00 4.02
811 1404 2.224159 GGGGAGGAGCAAGTGACCA 61.224 63.158 0.00 0.00 0.00 4.02
821 1414 4.458989 GGAGCAAGTGACCATGTCATTTAA 59.541 41.667 4.91 0.00 44.63 1.52
832 1425 7.122650 TGACCATGTCATTTAAGGAATTCTTCC 59.877 37.037 5.23 0.00 42.89 3.46
848 1441 3.766151 TCTTCCTATGCAACTACGAACG 58.234 45.455 0.00 0.00 0.00 3.95
852 1445 2.281762 CCTATGCAACTACGAACGCTTC 59.718 50.000 0.00 0.00 0.00 3.86
861 1454 3.475944 GAACGCTTCGAGGAAGGC 58.524 61.111 0.00 0.00 39.76 4.35
877 1470 3.950254 GCCTGCGCTGCTGCATAG 61.950 66.667 16.29 11.91 45.26 2.23
879 1472 2.245346 CCTGCGCTGCTGCATAGAG 61.245 63.158 16.29 5.00 45.26 2.43
899 1492 1.590147 CTTACCGCAACGACCTCCT 59.410 57.895 0.00 0.00 0.00 3.69
911 1504 3.009115 CCTCCTCCTCCCCGCAAA 61.009 66.667 0.00 0.00 0.00 3.68
916 1509 3.551496 CTCCTCCCCGCAAAGTGCA 62.551 63.158 0.61 0.00 45.36 4.57
950 1543 3.993081 CCTTTTATAGATGAGCTCCTGCG 59.007 47.826 12.15 0.00 45.42 5.18
990 1583 1.685765 CCTCCTGTGATCCGACCCA 60.686 63.158 0.00 0.00 0.00 4.51
1185 1778 1.445582 CGCTTGTACCTCGTCCCAC 60.446 63.158 0.00 0.00 0.00 4.61
1193 1786 4.135153 CTCGTCCCACCTGAGCCG 62.135 72.222 0.00 0.00 0.00 5.52
1196 1789 4.083862 GTCCCACCTGAGCCGGAC 62.084 72.222 5.05 0.00 38.18 4.79
1203 1796 4.135153 CTGAGCCGGACCGTGGAG 62.135 72.222 13.94 0.00 0.00 3.86
1213 1806 2.198304 GACCGTGGAGCTTGGGGAAT 62.198 60.000 0.00 0.00 0.00 3.01
1234 1827 6.317893 GGAATTTAAGCCAATCGACCTTCTTA 59.682 38.462 0.00 0.00 0.00 2.10
1239 1832 2.795470 GCCAATCGACCTTCTTATCGTC 59.205 50.000 0.00 0.00 39.38 4.20
1272 1865 2.420138 GCTGAGGGAGCGTGAGATA 58.580 57.895 0.00 0.00 38.15 1.98
1278 1871 1.531423 GGGAGCGTGAGATACCGATA 58.469 55.000 0.00 0.00 43.01 2.92
1286 1879 2.885266 GTGAGATACCGATACCTCTGCA 59.115 50.000 0.00 0.00 0.00 4.41
1287 1880 2.885266 TGAGATACCGATACCTCTGCAC 59.115 50.000 0.00 0.00 0.00 4.57
1298 1891 3.157949 TCTGCACACCGGTGTCCA 61.158 61.111 36.92 32.77 46.95 4.02
1303 1896 3.621805 ACACCGGTGTCCATCGCA 61.622 61.111 34.41 0.00 40.24 5.10
1314 1907 0.904649 TCCATCGCACTGTCCTCATT 59.095 50.000 0.00 0.00 0.00 2.57
1323 1916 1.078759 CTGTCCTCATTGGCGACGAC 61.079 60.000 0.00 0.00 35.26 4.34
1325 1918 1.078759 GTCCTCATTGGCGACGACTG 61.079 60.000 0.65 0.00 35.26 3.51
1327 1920 1.737735 CTCATTGGCGACGACTGCA 60.738 57.895 0.65 0.00 0.00 4.41
1342 1935 1.004799 TGCAAGTTACCGGCGCTAA 60.005 52.632 7.64 0.00 0.00 3.09
1350 1943 1.011333 TACCGGCGCTAATCAAAAGC 58.989 50.000 7.64 0.00 36.60 3.51
1366 1959 4.466015 TCAAAAGCAAGGTGGTCTTTCTTT 59.534 37.500 0.00 0.00 45.93 2.52
1374 1967 4.207955 AGGTGGTCTTTCTTTCCAACTTC 58.792 43.478 0.00 0.00 45.61 3.01
1381 1974 6.296836 GGTCTTTCTTTCCAACTTCCCCTATA 60.297 42.308 0.00 0.00 0.00 1.31
1383 1976 6.273730 TCTTTCTTTCCAACTTCCCCTATACA 59.726 38.462 0.00 0.00 0.00 2.29
1418 2012 9.139174 CTTGCTTGTTTTTCTCTTTCTTTTACA 57.861 29.630 0.00 0.00 0.00 2.41
1419 2013 8.460831 TGCTTGTTTTTCTCTTTCTTTTACAC 57.539 30.769 0.00 0.00 0.00 2.90
1445 2039 5.207768 CACAGTCAGTCTTGTAATGTTTGC 58.792 41.667 0.00 0.00 0.00 3.68
1446 2040 4.881273 ACAGTCAGTCTTGTAATGTTTGCA 59.119 37.500 0.00 0.00 0.00 4.08
1490 2084 3.411351 CGTGGACGCCGACTTTGG 61.411 66.667 0.00 0.00 0.00 3.28
1545 2139 2.053244 CATCCTAGGCACCTCCTTGAT 58.947 52.381 2.96 0.00 44.75 2.57
1553 2147 1.901591 CACCTCCTTGATGTGCAGTT 58.098 50.000 0.00 0.00 0.00 3.16
1744 2338 1.773054 GCATGACATGAGCCTGAGCG 61.773 60.000 19.76 0.00 46.67 5.03
1747 2341 1.875813 GACATGAGCCTGAGCGACG 60.876 63.158 0.00 0.00 46.67 5.12
1914 2508 1.065551 GCTTTTGTGCAGAGTCGGTTT 59.934 47.619 0.00 0.00 0.00 3.27
1931 2525 1.877443 GTTTGCTCGGGACAAAAGCTA 59.123 47.619 6.48 0.00 31.73 3.32
1958 2552 1.079405 CGTGGTGTCGCCCTACAAT 60.079 57.895 0.00 0.00 36.04 2.71
1966 2560 2.800736 GCCCTACAATGCGCAAGG 59.199 61.111 17.11 17.23 38.28 3.61
2109 2703 4.671549 CTGCCGTGCACAGCAACG 62.672 66.667 26.64 13.76 41.47 4.10
2200 2794 7.387397 GTGAGTGAGAAAATCTCTTCAGTTCAT 59.613 37.037 8.68 0.00 43.73 2.57
2201 2795 7.387122 TGAGTGAGAAAATCTCTTCAGTTCATG 59.613 37.037 8.68 0.00 43.73 3.07
2202 2796 7.222872 AGTGAGAAAATCTCTTCAGTTCATGT 58.777 34.615 8.68 0.00 43.73 3.21
2203 2797 7.718753 AGTGAGAAAATCTCTTCAGTTCATGTT 59.281 33.333 8.68 0.00 43.73 2.71
2204 2798 8.014517 GTGAGAAAATCTCTTCAGTTCATGTTC 58.985 37.037 8.68 0.00 43.73 3.18
2205 2799 7.716560 TGAGAAAATCTCTTCAGTTCATGTTCA 59.283 33.333 8.68 0.00 43.73 3.18
2214 2808 6.870439 TCTTCAGTTCATGTTCAGTCACATAG 59.130 38.462 0.00 0.00 35.51 2.23
2228 2822 3.509575 GTCACATAGAACAATTTGGGCCA 59.490 43.478 0.00 0.00 0.00 5.36
2237 2831 4.762289 ACAATTTGGGCCACTGTAAAAA 57.238 36.364 5.23 0.00 0.00 1.94
2257 2851 5.834239 AAAAACTAACGACGATCGACATT 57.166 34.783 24.34 13.47 43.74 2.71
2258 2852 4.817987 AAACTAACGACGATCGACATTG 57.182 40.909 24.34 10.67 43.74 2.82
2260 2854 3.168963 ACTAACGACGATCGACATTGTG 58.831 45.455 24.34 10.39 43.74 3.33
2261 2855 2.060326 AACGACGATCGACATTGTGT 57.940 45.000 24.34 5.67 43.74 3.72
2265 2859 2.470621 CGACGATCGACATTGTGTTGTG 60.471 50.000 24.34 0.00 43.74 3.33
2266 2860 2.475111 GACGATCGACATTGTGTTGTGT 59.525 45.455 24.34 0.00 33.51 3.72
2268 2862 4.052608 ACGATCGACATTGTGTTGTGTTA 58.947 39.130 24.34 0.00 33.51 2.41
2269 2863 4.688879 ACGATCGACATTGTGTTGTGTTAT 59.311 37.500 24.34 0.00 33.51 1.89
2285 2883 3.063997 GTGTTATGTTCTTCCATCCGCAG 59.936 47.826 0.00 0.00 0.00 5.18
2308 2906 2.830370 GCCTTTGGATCCTGGGCG 60.830 66.667 21.02 5.14 33.30 6.13
2311 2909 1.815421 CTTTGGATCCTGGGCGACG 60.815 63.158 14.23 0.00 0.00 5.12
2346 2944 1.703438 GCAGCAAGACGATCTGGCAG 61.703 60.000 8.58 8.58 45.88 4.85
2352 2950 1.786937 AGACGATCTGGCAGGAGATT 58.213 50.000 15.73 0.00 32.57 2.40
2370 2968 3.423154 GTGGCCGACGCAAAGGAG 61.423 66.667 0.00 0.00 36.38 3.69
2385 2983 2.153034 AGGAGAGAGGGTGCTTCTAC 57.847 55.000 0.00 0.00 0.00 2.59
2395 2993 0.435008 GTGCTTCTACGACTGCAACG 59.565 55.000 10.65 10.65 37.17 4.10
2397 2995 0.985549 GCTTCTACGACTGCAACGAG 59.014 55.000 17.54 11.12 34.70 4.18
2401 2999 0.240145 CTACGACTGCAACGAGGACA 59.760 55.000 17.54 0.18 34.70 4.02
2464 3069 5.008613 CGGTCGGATGAATTAATTGGACAAT 59.991 40.000 5.17 0.00 0.00 2.71
2474 3079 3.837213 AATTGGACAATCTGCTCAACG 57.163 42.857 0.00 0.00 0.00 4.10
2476 3081 2.254546 TGGACAATCTGCTCAACGTT 57.745 45.000 0.00 0.00 0.00 3.99
2477 3082 1.872952 TGGACAATCTGCTCAACGTTG 59.127 47.619 22.35 22.35 0.00 4.10
2497 3102 3.165559 GAGCACACTCGTATAGGCG 57.834 57.895 0.00 0.00 32.04 5.52
2498 3103 0.317938 GAGCACACTCGTATAGGCGG 60.318 60.000 0.00 0.00 32.04 6.13
2499 3104 1.299926 GCACACTCGTATAGGCGGG 60.300 63.158 0.00 0.00 38.50 6.13
2500 3105 1.299926 CACACTCGTATAGGCGGGC 60.300 63.158 0.00 0.00 35.43 6.13
2501 3106 2.050351 CACTCGTATAGGCGGGCG 60.050 66.667 0.00 0.00 35.43 6.13
2502 3107 3.292936 ACTCGTATAGGCGGGCGG 61.293 66.667 0.00 0.00 35.43 6.13
2503 3108 4.052229 CTCGTATAGGCGGGCGGG 62.052 72.222 0.00 0.00 0.00 6.13
2504 3109 4.900704 TCGTATAGGCGGGCGGGT 62.901 66.667 0.00 0.00 0.00 5.28
2507 3112 2.203728 TATAGGCGGGCGGGTGAT 60.204 61.111 0.00 0.00 0.00 3.06
2531 3136 4.931661 TGATCTAGGGTACGAATGAACC 57.068 45.455 0.00 0.00 34.85 3.62
2532 3137 4.543689 TGATCTAGGGTACGAATGAACCT 58.456 43.478 0.00 0.00 35.97 3.50
2534 3139 6.312529 TGATCTAGGGTACGAATGAACCTAT 58.687 40.000 0.00 0.00 35.97 2.57
2535 3140 6.208797 TGATCTAGGGTACGAATGAACCTATG 59.791 42.308 0.00 0.00 35.97 2.23
2539 3144 3.131396 GGTACGAATGAACCTATGCCTG 58.869 50.000 0.00 0.00 32.72 4.85
2542 3147 2.769663 ACGAATGAACCTATGCCTGGTA 59.230 45.455 0.00 0.00 36.69 3.25
2548 3153 3.329520 TGAACCTATGCCTGGTACTTGTT 59.670 43.478 0.00 0.00 36.69 2.83
2553 3158 5.116882 CCTATGCCTGGTACTTGTTAAGTC 58.883 45.833 0.00 0.00 41.77 3.01
2556 3161 3.251571 GCCTGGTACTTGTTAAGTCGAG 58.748 50.000 0.00 0.00 41.77 4.04
2559 3164 5.162075 CCTGGTACTTGTTAAGTCGAGAAG 58.838 45.833 0.00 0.00 41.77 2.85
2562 3167 5.302568 TGGTACTTGTTAAGTCGAGAAGGAA 59.697 40.000 0.00 0.00 41.77 3.36
2568 3173 4.994852 TGTTAAGTCGAGAAGGAACCAATG 59.005 41.667 0.00 0.00 0.00 2.82
2569 3174 2.770164 AGTCGAGAAGGAACCAATGG 57.230 50.000 0.00 0.00 0.00 3.16
2579 3195 1.824852 GGAACCAATGGCCGAAAGATT 59.175 47.619 0.00 0.00 0.00 2.40
2585 3201 1.035139 ATGGCCGAAAGATTCATGGC 58.965 50.000 0.00 0.00 44.98 4.40
2591 3207 3.319122 GCCGAAAGATTCATGGCCTTAAT 59.681 43.478 3.32 0.29 39.83 1.40
2602 3218 1.707989 TGGCCTTAATCTGTTGGACCA 59.292 47.619 3.32 0.00 0.00 4.02
2607 3223 4.770795 CCTTAATCTGTTGGACCAGTAGG 58.229 47.826 0.00 0.00 42.21 3.18
2623 3249 1.774894 TAGGTGCCGCCACTTCCTTT 61.775 55.000 0.00 0.00 41.75 3.11
2630 3256 1.172180 CGCCACTTCCTTTCCTGCAA 61.172 55.000 0.00 0.00 0.00 4.08
2638 3264 3.524095 TCCTTTCCTGCAAGAATCCAA 57.476 42.857 0.00 0.00 34.07 3.53
2641 3267 4.021916 CCTTTCCTGCAAGAATCCAAGAT 58.978 43.478 0.00 0.00 34.07 2.40
2647 3273 5.045651 TCCTGCAAGAATCCAAGATGAACTA 60.046 40.000 0.00 0.00 34.07 2.24
2648 3274 5.065731 CCTGCAAGAATCCAAGATGAACTAC 59.934 44.000 0.00 0.00 34.07 2.73
2674 3310 6.718593 ATGAAATTATGGCTGGTAGGGATA 57.281 37.500 0.00 0.00 0.00 2.59
2682 3318 1.472728 GCTGGTAGGGATACGGTTGTG 60.473 57.143 0.00 0.00 37.60 3.33
2691 3327 3.126343 GGGATACGGTTGTGTGTCAATTC 59.874 47.826 0.00 0.00 36.33 2.17
2692 3328 3.126343 GGATACGGTTGTGTGTCAATTCC 59.874 47.826 0.00 0.00 38.38 3.01
2696 3332 0.306533 GTTGTGTGTCAATTCCGCGT 59.693 50.000 4.92 0.00 38.38 6.01
2698 3334 1.129809 GTGTGTCAATTCCGCGTCG 59.870 57.895 4.92 0.00 0.00 5.12
2708 3344 3.812019 CCGCGTCGGTCTGCTACT 61.812 66.667 4.92 0.00 42.73 2.57
2712 3348 0.798771 GCGTCGGTCTGCTACTCTTG 60.799 60.000 0.00 0.00 0.00 3.02
2725 3361 0.768221 ACTCTTGGGAGGCCAACTGA 60.768 55.000 5.01 0.00 43.46 3.41
2726 3362 0.401738 CTCTTGGGAGGCCAACTGAA 59.598 55.000 5.01 0.00 36.03 3.02
2727 3363 0.401738 TCTTGGGAGGCCAACTGAAG 59.598 55.000 5.01 0.00 0.00 3.02
2728 3364 0.401738 CTTGGGAGGCCAACTGAAGA 59.598 55.000 5.01 0.00 0.00 2.87
2729 3365 0.850100 TTGGGAGGCCAACTGAAGAA 59.150 50.000 5.01 0.00 0.00 2.52
2731 3367 0.962855 GGGAGGCCAACTGAAGAAGC 60.963 60.000 5.01 0.00 0.00 3.86
2732 3368 0.037447 GGAGGCCAACTGAAGAAGCT 59.963 55.000 5.01 0.00 0.00 3.74
2733 3369 1.546548 GGAGGCCAACTGAAGAAGCTT 60.547 52.381 5.01 0.00 0.00 3.74
2734 3370 2.234143 GAGGCCAACTGAAGAAGCTTT 58.766 47.619 5.01 0.00 0.00 3.51
2735 3371 2.625314 GAGGCCAACTGAAGAAGCTTTT 59.375 45.455 5.01 0.00 0.00 2.27
2736 3372 2.363359 AGGCCAACTGAAGAAGCTTTTG 59.637 45.455 5.01 0.00 0.00 2.44
2738 3374 3.317993 GGCCAACTGAAGAAGCTTTTGTA 59.682 43.478 0.00 0.00 0.00 2.41
2739 3375 4.540824 GCCAACTGAAGAAGCTTTTGTAG 58.459 43.478 0.00 0.00 0.00 2.74
2740 3376 4.557496 GCCAACTGAAGAAGCTTTTGTAGG 60.557 45.833 0.00 0.00 0.00 3.18
2741 3377 4.540824 CAACTGAAGAAGCTTTTGTAGGC 58.459 43.478 0.00 0.00 0.00 3.93
2742 3378 2.808543 ACTGAAGAAGCTTTTGTAGGCG 59.191 45.455 0.00 0.00 0.00 5.52
2743 3379 1.535462 TGAAGAAGCTTTTGTAGGCGC 59.465 47.619 0.00 0.00 0.00 6.53
2744 3380 1.535462 GAAGAAGCTTTTGTAGGCGCA 59.465 47.619 10.83 0.00 0.00 6.09
2745 3381 1.160137 AGAAGCTTTTGTAGGCGCAG 58.840 50.000 10.83 0.00 0.00 5.18
2746 3382 1.156736 GAAGCTTTTGTAGGCGCAGA 58.843 50.000 10.83 0.00 0.00 4.26
2747 3383 1.129437 GAAGCTTTTGTAGGCGCAGAG 59.871 52.381 10.83 0.00 0.00 3.35
2748 3384 0.321671 AGCTTTTGTAGGCGCAGAGA 59.678 50.000 10.83 0.00 0.00 3.10
2749 3385 1.156736 GCTTTTGTAGGCGCAGAGAA 58.843 50.000 10.83 0.00 0.00 2.87
2750 3386 1.535462 GCTTTTGTAGGCGCAGAGAAA 59.465 47.619 10.83 4.19 0.00 2.52
2751 3387 2.665794 GCTTTTGTAGGCGCAGAGAAAC 60.666 50.000 10.83 0.00 0.00 2.78
2752 3388 2.248280 TTTGTAGGCGCAGAGAAACA 57.752 45.000 10.83 0.32 0.00 2.83
2753 3389 2.472695 TTGTAGGCGCAGAGAAACAT 57.527 45.000 10.83 0.00 0.00 2.71
2754 3390 1.725641 TGTAGGCGCAGAGAAACATG 58.274 50.000 10.83 0.00 0.00 3.21
2755 3391 1.009829 GTAGGCGCAGAGAAACATGG 58.990 55.000 10.83 0.00 0.00 3.66
2756 3392 0.613260 TAGGCGCAGAGAAACATGGT 59.387 50.000 10.83 0.00 0.00 3.55
2757 3393 0.957395 AGGCGCAGAGAAACATGGTG 60.957 55.000 10.83 0.00 0.00 4.17
2758 3394 0.955428 GGCGCAGAGAAACATGGTGA 60.955 55.000 10.83 0.00 0.00 4.02
2759 3395 0.166814 GCGCAGAGAAACATGGTGAC 59.833 55.000 0.30 0.00 0.00 3.67
2779 3415 2.069273 CACCGAACTGTAAGCCTTGAG 58.931 52.381 0.00 0.00 37.60 3.02
2782 3418 2.028930 CCGAACTGTAAGCCTTGAGACT 60.029 50.000 0.00 0.00 37.60 3.24
2783 3419 2.989840 CGAACTGTAAGCCTTGAGACTG 59.010 50.000 0.00 0.00 37.60 3.51
2784 3420 2.464157 ACTGTAAGCCTTGAGACTGC 57.536 50.000 0.00 0.00 37.60 4.40
2785 3421 1.002544 ACTGTAAGCCTTGAGACTGCC 59.997 52.381 0.00 0.00 37.60 4.85
2786 3422 0.037326 TGTAAGCCTTGAGACTGCCG 60.037 55.000 0.00 0.00 0.00 5.69
2787 3423 0.741221 GTAAGCCTTGAGACTGCCGG 60.741 60.000 0.00 0.00 0.00 6.13
2788 3424 0.902984 TAAGCCTTGAGACTGCCGGA 60.903 55.000 5.05 0.00 0.00 5.14
2789 3425 1.768684 AAGCCTTGAGACTGCCGGAA 61.769 55.000 5.05 0.00 0.00 4.30
2790 3426 1.743252 GCCTTGAGACTGCCGGAAG 60.743 63.158 8.33 8.33 0.00 3.46
2791 3427 1.674057 CCTTGAGACTGCCGGAAGT 59.326 57.895 17.45 17.45 0.00 3.01
2794 3430 1.118965 TTGAGACTGCCGGAAGTCCA 61.119 55.000 34.96 28.27 46.51 4.02
2803 3439 1.739067 CCGGAAGTCCATTGTTCTCC 58.261 55.000 0.00 0.00 35.14 3.71
2808 3444 1.747444 AGTCCATTGTTCTCCCCTGT 58.253 50.000 0.00 0.00 0.00 4.00
2809 3445 1.630878 AGTCCATTGTTCTCCCCTGTC 59.369 52.381 0.00 0.00 0.00 3.51
2810 3446 0.991920 TCCATTGTTCTCCCCTGTCC 59.008 55.000 0.00 0.00 0.00 4.02
2811 3447 0.034089 CCATTGTTCTCCCCTGTCCC 60.034 60.000 0.00 0.00 0.00 4.46
2812 3448 0.995024 CATTGTTCTCCCCTGTCCCT 59.005 55.000 0.00 0.00 0.00 4.20
2813 3449 0.995024 ATTGTTCTCCCCTGTCCCTG 59.005 55.000 0.00 0.00 0.00 4.45
2814 3450 0.401395 TTGTTCTCCCCTGTCCCTGT 60.401 55.000 0.00 0.00 0.00 4.00
2815 3451 0.490017 TGTTCTCCCCTGTCCCTGTA 59.510 55.000 0.00 0.00 0.00 2.74
2816 3452 1.080498 TGTTCTCCCCTGTCCCTGTAT 59.920 52.381 0.00 0.00 0.00 2.29
2821 3457 3.077088 TCTCCCCTGTCCCTGTATATACC 59.923 52.174 10.38 0.00 0.00 2.73
2828 3464 6.443849 CCCTGTCCCTGTATATACCACATTAT 59.556 42.308 10.38 0.00 0.00 1.28
2829 3465 7.364762 CCCTGTCCCTGTATATACCACATTATC 60.365 44.444 10.38 0.00 0.00 1.75
2890 3528 4.760530 TCCCCTCTGATGTCAACTATTG 57.239 45.455 0.00 0.00 0.00 1.90
2911 3549 2.843701 GCAACCAGCAGCATATAGTCT 58.156 47.619 0.00 0.00 44.79 3.24
2912 3550 3.995199 GCAACCAGCAGCATATAGTCTA 58.005 45.455 0.00 0.00 44.79 2.59
2922 3564 6.663093 AGCAGCATATAGTCTATAGTGCTCTT 59.337 38.462 21.57 14.96 35.40 2.85
2927 3569 8.519526 GCATATAGTCTATAGTGCTCTTTCAGT 58.480 37.037 17.89 0.00 0.00 3.41
2933 3575 8.371699 AGTCTATAGTGCTCTTTCAGTTTTCTT 58.628 33.333 0.00 0.00 0.00 2.52
2935 3577 9.561069 TCTATAGTGCTCTTTCAGTTTTCTTTT 57.439 29.630 0.00 0.00 0.00 2.27
2939 3581 7.199078 AGTGCTCTTTCAGTTTTCTTTTGATC 58.801 34.615 0.00 0.00 0.00 2.92
2945 3587 9.184523 TCTTTCAGTTTTCTTTTGATCTTGGTA 57.815 29.630 0.00 0.00 0.00 3.25
2951 3593 6.916360 TTTCTTTTGATCTTGGTAGCCATT 57.084 33.333 0.00 0.00 31.53 3.16
2955 3597 5.840243 TTTGATCTTGGTAGCCATTGATG 57.160 39.130 8.24 0.00 31.53 3.07
2956 3598 4.776435 TGATCTTGGTAGCCATTGATGA 57.224 40.909 8.24 0.13 31.53 2.92
2958 3600 5.508567 TGATCTTGGTAGCCATTGATGAAA 58.491 37.500 8.24 0.00 31.53 2.69
2962 3604 4.032960 TGGTAGCCATTGATGAAAGTGT 57.967 40.909 0.00 0.00 0.00 3.55
2963 3605 4.406456 TGGTAGCCATTGATGAAAGTGTT 58.594 39.130 0.00 0.00 0.00 3.32
2964 3606 5.565509 TGGTAGCCATTGATGAAAGTGTTA 58.434 37.500 0.00 0.00 0.00 2.41
2967 3609 3.763897 AGCCATTGATGAAAGTGTTACCC 59.236 43.478 0.00 0.00 0.00 3.69
2968 3610 3.763897 GCCATTGATGAAAGTGTTACCCT 59.236 43.478 0.00 0.00 0.00 4.34
2970 3612 4.380867 CCATTGATGAAAGTGTTACCCTGC 60.381 45.833 0.00 0.00 0.00 4.85
2971 3613 3.500448 TGATGAAAGTGTTACCCTGCA 57.500 42.857 0.00 0.00 0.00 4.41
2978 3630 1.820519 AGTGTTACCCTGCAATGCATG 59.179 47.619 8.91 5.86 38.13 4.06
3000 3652 3.244491 GGATCTAGATGAAGCCAGCATGT 60.244 47.826 10.74 0.00 0.00 3.21
3009 3664 4.005650 TGAAGCCAGCATGTAGAAGAAAG 58.994 43.478 0.00 0.00 0.00 2.62
3012 3667 2.941720 GCCAGCATGTAGAAGAAAGAGG 59.058 50.000 0.00 0.00 0.00 3.69
3023 3678 3.761752 AGAAGAAAGAGGGAGACGAAGAG 59.238 47.826 0.00 0.00 0.00 2.85
3047 3702 2.283145 AGATGCTTGGAACTGCAACT 57.717 45.000 0.00 0.00 40.89 3.16
3051 3706 3.138884 TGCTTGGAACTGCAACTGATA 57.861 42.857 0.00 0.00 35.92 2.15
3055 3710 3.616956 TGGAACTGCAACTGATAGAGG 57.383 47.619 0.00 0.00 0.00 3.69
3066 3721 8.579850 TGCAACTGATAGAGGTGATTAATTTT 57.420 30.769 0.00 0.00 42.79 1.82
3088 3743 7.761651 TTTGTTCTCTTGATCGATCTACATG 57.238 36.000 25.02 11.99 0.00 3.21
3097 3752 8.204160 TCTTGATCGATCTACATGTTGGTTATT 58.796 33.333 25.02 0.00 0.00 1.40
3098 3753 7.946655 TGATCGATCTACATGTTGGTTATTC 57.053 36.000 25.02 0.00 0.00 1.75
3153 3808 7.068348 GTGTACTCCTGTGGTAGAATAGAATGA 59.932 40.741 0.00 0.00 0.00 2.57
3171 3826 1.066215 TGATGCGCTGTAGTTGTGGAT 60.066 47.619 9.73 0.00 0.00 3.41
3173 3828 1.890876 TGCGCTGTAGTTGTGGATTT 58.109 45.000 9.73 0.00 0.00 2.17
3206 3861 5.630680 GTGTTGAGTTAATTCACATGCCTTG 59.369 40.000 0.00 0.00 0.00 3.61
3231 3886 0.883833 CTGTGGTTGGGTGCTGATTC 59.116 55.000 0.00 0.00 0.00 2.52
3232 3887 0.184692 TGTGGTTGGGTGCTGATTCA 59.815 50.000 0.00 0.00 0.00 2.57
3233 3888 0.883833 GTGGTTGGGTGCTGATTCAG 59.116 55.000 9.40 9.40 34.12 3.02
3234 3889 0.478072 TGGTTGGGTGCTGATTCAGT 59.522 50.000 14.90 0.00 33.43 3.41
3235 3890 1.133513 TGGTTGGGTGCTGATTCAGTT 60.134 47.619 14.90 0.00 33.43 3.16
3240 3895 4.901197 TGGGTGCTGATTCAGTTAGTTA 57.099 40.909 14.90 0.00 33.43 2.24
3243 3898 4.870991 GGGTGCTGATTCAGTTAGTTAGTC 59.129 45.833 14.90 0.00 33.43 2.59
3250 3905 7.159322 TGATTCAGTTAGTTAGTCAGTCTCC 57.841 40.000 0.00 0.00 0.00 3.71
3270 3931 1.674322 GCTTTCTGGTTAGGCGGCA 60.674 57.895 13.08 0.00 0.00 5.69
3291 3952 3.127030 CAGCCGTTTAAGATGGTTCCTTC 59.873 47.826 0.00 0.00 36.73 3.46
3297 3958 5.334879 CGTTTAAGATGGTTCCTTCTGTTGG 60.335 44.000 7.80 0.00 0.00 3.77
3300 3961 2.711009 AGATGGTTCCTTCTGTTGGTGA 59.289 45.455 6.48 0.00 0.00 4.02
3301 3962 3.331889 AGATGGTTCCTTCTGTTGGTGAT 59.668 43.478 6.48 0.00 0.00 3.06
3302 3963 2.862541 TGGTTCCTTCTGTTGGTGATG 58.137 47.619 0.00 0.00 0.00 3.07
3303 3964 2.174639 TGGTTCCTTCTGTTGGTGATGT 59.825 45.455 0.00 0.00 0.00 3.06
3307 3968 2.038952 TCCTTCTGTTGGTGATGTCTGG 59.961 50.000 0.00 0.00 0.00 3.86
3308 3969 2.224621 CCTTCTGTTGGTGATGTCTGGT 60.225 50.000 0.00 0.00 0.00 4.00
3309 3970 2.549064 TCTGTTGGTGATGTCTGGTG 57.451 50.000 0.00 0.00 0.00 4.17
3310 3971 1.768275 TCTGTTGGTGATGTCTGGTGT 59.232 47.619 0.00 0.00 0.00 4.16
3311 3972 1.875514 CTGTTGGTGATGTCTGGTGTG 59.124 52.381 0.00 0.00 0.00 3.82
3312 3973 1.211703 TGTTGGTGATGTCTGGTGTGT 59.788 47.619 0.00 0.00 0.00 3.72
3313 3974 1.873591 GTTGGTGATGTCTGGTGTGTC 59.126 52.381 0.00 0.00 0.00 3.67
3314 3975 0.033366 TGGTGATGTCTGGTGTGTCG 59.967 55.000 0.00 0.00 0.00 4.35
3315 3976 0.317160 GGTGATGTCTGGTGTGTCGA 59.683 55.000 0.00 0.00 0.00 4.20
3316 3977 1.670087 GGTGATGTCTGGTGTGTCGAG 60.670 57.143 0.00 0.00 0.00 4.04
3317 3978 1.269723 GTGATGTCTGGTGTGTCGAGA 59.730 52.381 0.00 0.00 0.00 4.04
3318 3979 1.960689 TGATGTCTGGTGTGTCGAGAA 59.039 47.619 0.00 0.00 32.98 2.87
3319 3980 2.562738 TGATGTCTGGTGTGTCGAGAAT 59.437 45.455 0.00 0.00 32.98 2.40
3320 3981 2.724977 TGTCTGGTGTGTCGAGAATC 57.275 50.000 0.00 0.00 32.98 2.52
3321 3982 1.960689 TGTCTGGTGTGTCGAGAATCA 59.039 47.619 0.00 0.00 32.98 2.57
3322 3983 2.562738 TGTCTGGTGTGTCGAGAATCAT 59.437 45.455 0.00 0.00 32.98 2.45
3323 3984 2.926200 GTCTGGTGTGTCGAGAATCATG 59.074 50.000 0.00 0.00 32.98 3.07
3324 3985 2.562738 TCTGGTGTGTCGAGAATCATGT 59.437 45.455 0.00 0.00 33.17 3.21
3325 3986 2.669924 CTGGTGTGTCGAGAATCATGTG 59.330 50.000 0.00 0.00 33.17 3.21
3326 3987 1.394917 GGTGTGTCGAGAATCATGTGC 59.605 52.381 0.00 0.00 33.17 4.57
3327 3988 2.068519 GTGTGTCGAGAATCATGTGCA 58.931 47.619 0.00 0.00 33.17 4.57
3328 3989 2.480037 GTGTGTCGAGAATCATGTGCAA 59.520 45.455 0.00 0.00 33.17 4.08
3329 3990 3.058983 GTGTGTCGAGAATCATGTGCAAA 60.059 43.478 0.00 0.00 33.17 3.68
3330 3991 3.563390 TGTGTCGAGAATCATGTGCAAAA 59.437 39.130 0.00 0.00 33.17 2.44
3331 3992 4.036144 TGTGTCGAGAATCATGTGCAAAAA 59.964 37.500 0.00 0.00 33.17 1.94
3332 3993 4.614284 GTGTCGAGAATCATGTGCAAAAAG 59.386 41.667 0.00 0.00 33.17 2.27
3333 3994 4.161333 GTCGAGAATCATGTGCAAAAAGG 58.839 43.478 0.00 0.00 33.17 3.11
3334 3995 3.191162 TCGAGAATCATGTGCAAAAAGGG 59.809 43.478 0.00 0.00 33.17 3.95
3335 3996 3.674138 CGAGAATCATGTGCAAAAAGGGG 60.674 47.826 0.00 0.00 33.17 4.79
3336 3997 3.242011 AGAATCATGTGCAAAAAGGGGT 58.758 40.909 0.00 0.00 0.00 4.95
3337 3998 4.415596 AGAATCATGTGCAAAAAGGGGTA 58.584 39.130 0.00 0.00 0.00 3.69
3338 3999 4.463891 AGAATCATGTGCAAAAAGGGGTAG 59.536 41.667 0.00 0.00 0.00 3.18
3339 4000 2.524306 TCATGTGCAAAAAGGGGTAGG 58.476 47.619 0.00 0.00 0.00 3.18
3340 4001 2.109128 TCATGTGCAAAAAGGGGTAGGA 59.891 45.455 0.00 0.00 0.00 2.94
3341 4002 2.990740 TGTGCAAAAAGGGGTAGGAT 57.009 45.000 0.00 0.00 0.00 3.24
3342 4003 4.017958 TCATGTGCAAAAAGGGGTAGGATA 60.018 41.667 0.00 0.00 0.00 2.59
3343 4004 4.601406 TGTGCAAAAAGGGGTAGGATAT 57.399 40.909 0.00 0.00 0.00 1.63
3344 4005 5.718801 TGTGCAAAAAGGGGTAGGATATA 57.281 39.130 0.00 0.00 0.00 0.86
3345 4006 6.274322 TGTGCAAAAAGGGGTAGGATATAT 57.726 37.500 0.00 0.00 0.00 0.86
3346 4007 6.303839 TGTGCAAAAAGGGGTAGGATATATC 58.696 40.000 3.96 3.96 0.00 1.63
3347 4008 5.411669 GTGCAAAAAGGGGTAGGATATATCG 59.588 44.000 6.64 0.00 0.00 2.92
3348 4009 4.941873 GCAAAAAGGGGTAGGATATATCGG 59.058 45.833 6.64 0.00 0.00 4.18
3349 4010 5.514310 GCAAAAAGGGGTAGGATATATCGGT 60.514 44.000 6.64 0.00 0.00 4.69
3350 4011 5.757099 AAAAGGGGTAGGATATATCGGTG 57.243 43.478 6.64 0.00 0.00 4.94
3351 4012 3.399952 AGGGGTAGGATATATCGGTGG 57.600 52.381 6.64 0.00 0.00 4.61
3352 4013 2.931088 AGGGGTAGGATATATCGGTGGA 59.069 50.000 6.64 0.00 0.00 4.02
3353 4014 3.338824 AGGGGTAGGATATATCGGTGGAA 59.661 47.826 6.64 0.00 0.00 3.53
3354 4015 4.015541 AGGGGTAGGATATATCGGTGGAAT 60.016 45.833 6.64 0.00 0.00 3.01
3355 4016 4.720273 GGGGTAGGATATATCGGTGGAATT 59.280 45.833 6.64 0.00 0.00 2.17
3356 4017 5.396436 GGGGTAGGATATATCGGTGGAATTG 60.396 48.000 6.64 0.00 0.00 2.32
3357 4018 5.189145 GGGTAGGATATATCGGTGGAATTGT 59.811 44.000 6.64 0.00 0.00 2.71
3358 4019 6.296259 GGGTAGGATATATCGGTGGAATTGTT 60.296 42.308 6.64 0.00 0.00 2.83
3359 4020 6.594159 GGTAGGATATATCGGTGGAATTGTTG 59.406 42.308 6.64 0.00 0.00 3.33
3360 4021 5.560724 AGGATATATCGGTGGAATTGTTGG 58.439 41.667 6.64 0.00 0.00 3.77
3361 4022 5.309543 AGGATATATCGGTGGAATTGTTGGA 59.690 40.000 6.64 0.00 0.00 3.53
3362 4023 6.012508 AGGATATATCGGTGGAATTGTTGGAT 60.013 38.462 6.64 0.00 0.00 3.41
3363 4024 6.094048 GGATATATCGGTGGAATTGTTGGATG 59.906 42.308 6.64 0.00 0.00 3.51
3364 4025 2.869101 TCGGTGGAATTGTTGGATGA 57.131 45.000 0.00 0.00 0.00 2.92
3365 4026 3.364460 TCGGTGGAATTGTTGGATGAT 57.636 42.857 0.00 0.00 0.00 2.45
3366 4027 3.278574 TCGGTGGAATTGTTGGATGATC 58.721 45.455 0.00 0.00 0.00 2.92
3367 4028 3.016031 CGGTGGAATTGTTGGATGATCA 58.984 45.455 0.00 0.00 0.00 2.92
3368 4029 3.065786 CGGTGGAATTGTTGGATGATCAG 59.934 47.826 0.09 0.00 0.00 2.90
3369 4030 3.181483 GGTGGAATTGTTGGATGATCAGC 60.181 47.826 1.26 1.26 0.00 4.26
3370 4031 3.444742 GTGGAATTGTTGGATGATCAGCA 59.555 43.478 13.85 0.00 0.00 4.41
3371 4032 3.697542 TGGAATTGTTGGATGATCAGCAG 59.302 43.478 13.85 0.00 0.00 4.24
3372 4033 3.698040 GGAATTGTTGGATGATCAGCAGT 59.302 43.478 13.85 0.00 0.00 4.40
3373 4034 4.439700 GGAATTGTTGGATGATCAGCAGTG 60.440 45.833 13.85 0.00 0.00 3.66
3374 4035 1.456296 TGTTGGATGATCAGCAGTGC 58.544 50.000 13.85 7.13 0.00 4.40
3375 4036 1.271488 TGTTGGATGATCAGCAGTGCA 60.271 47.619 19.20 0.00 0.00 4.57
3376 4037 1.400846 GTTGGATGATCAGCAGTGCAG 59.599 52.381 19.20 9.98 0.00 4.41
3377 4038 0.616891 TGGATGATCAGCAGTGCAGT 59.383 50.000 19.20 1.81 0.00 4.40
3378 4039 1.015109 GGATGATCAGCAGTGCAGTG 58.985 55.000 19.20 17.56 0.00 3.66
3379 4040 1.678123 GGATGATCAGCAGTGCAGTGT 60.678 52.381 22.22 7.06 0.00 3.55
3380 4041 2.082231 GATGATCAGCAGTGCAGTGTT 58.918 47.619 22.22 14.37 0.00 3.32
3381 4042 2.837532 TGATCAGCAGTGCAGTGTTA 57.162 45.000 22.22 8.95 0.00 2.41
3382 4043 3.339253 TGATCAGCAGTGCAGTGTTAT 57.661 42.857 22.22 13.06 0.00 1.89
3383 4044 3.678289 TGATCAGCAGTGCAGTGTTATT 58.322 40.909 22.22 7.58 0.00 1.40
3384 4045 4.831107 TGATCAGCAGTGCAGTGTTATTA 58.169 39.130 22.22 8.04 0.00 0.98
3385 4046 5.244755 TGATCAGCAGTGCAGTGTTATTAA 58.755 37.500 22.22 4.23 0.00 1.40
3386 4047 5.882000 TGATCAGCAGTGCAGTGTTATTAAT 59.118 36.000 22.22 8.53 0.00 1.40
3387 4048 5.801350 TCAGCAGTGCAGTGTTATTAATC 57.199 39.130 22.22 3.59 0.00 1.75
3388 4049 5.491070 TCAGCAGTGCAGTGTTATTAATCT 58.509 37.500 22.22 5.87 0.00 2.40
3389 4050 5.352293 TCAGCAGTGCAGTGTTATTAATCTG 59.648 40.000 22.22 16.73 0.00 2.90
3399 4060 8.485050 CAGTGTTATTAATCTGCATCGATTTG 57.515 34.615 6.51 0.00 35.40 2.32
3400 4061 8.124823 CAGTGTTATTAATCTGCATCGATTTGT 58.875 33.333 6.51 0.32 35.40 2.83
3401 4062 8.124823 AGTGTTATTAATCTGCATCGATTTGTG 58.875 33.333 6.51 0.00 35.40 3.33
3402 4063 7.910162 GTGTTATTAATCTGCATCGATTTGTGT 59.090 33.333 6.51 0.00 35.40 3.72
3403 4064 8.458052 TGTTATTAATCTGCATCGATTTGTGTT 58.542 29.630 6.51 0.00 35.40 3.32
3404 4065 9.289303 GTTATTAATCTGCATCGATTTGTGTTT 57.711 29.630 6.51 0.00 35.40 2.83
3407 4068 9.669353 ATTAATCTGCATCGATTTGTGTTTATC 57.331 29.630 6.51 0.00 35.40 1.75
3408 4069 6.682423 ATCTGCATCGATTTGTGTTTATCA 57.318 33.333 0.00 0.00 0.00 2.15
3409 4070 6.682423 TCTGCATCGATTTGTGTTTATCAT 57.318 33.333 0.00 0.00 0.00 2.45
3410 4071 6.718388 TCTGCATCGATTTGTGTTTATCATC 58.282 36.000 0.00 0.00 0.00 2.92
3411 4072 5.820131 TGCATCGATTTGTGTTTATCATCC 58.180 37.500 0.00 0.00 0.00 3.51
3412 4073 5.356470 TGCATCGATTTGTGTTTATCATCCA 59.644 36.000 0.00 0.00 0.00 3.41
3413 4074 5.682862 GCATCGATTTGTGTTTATCATCCAC 59.317 40.000 0.00 0.00 0.00 4.02
3414 4075 5.463499 TCGATTTGTGTTTATCATCCACG 57.537 39.130 0.00 0.00 31.75 4.94
3415 4076 4.932799 TCGATTTGTGTTTATCATCCACGT 59.067 37.500 0.00 0.00 31.75 4.49
3416 4077 5.021389 CGATTTGTGTTTATCATCCACGTG 58.979 41.667 9.08 9.08 31.75 4.49
3417 4078 5.163903 CGATTTGTGTTTATCATCCACGTGA 60.164 40.000 19.30 3.36 31.75 4.35
3418 4079 6.567687 ATTTGTGTTTATCATCCACGTGAA 57.432 33.333 19.30 0.00 31.75 3.18
3419 4080 6.567687 TTTGTGTTTATCATCCACGTGAAT 57.432 33.333 19.30 0.00 31.75 2.57
3420 4081 6.567687 TTGTGTTTATCATCCACGTGAATT 57.432 33.333 19.30 0.00 31.75 2.17
3421 4082 5.937187 TGTGTTTATCATCCACGTGAATTG 58.063 37.500 19.30 11.32 31.75 2.32
3422 4083 5.703130 TGTGTTTATCATCCACGTGAATTGA 59.297 36.000 19.30 16.29 31.75 2.57
3423 4084 6.374053 TGTGTTTATCATCCACGTGAATTGAT 59.626 34.615 19.30 21.44 31.75 2.57
3424 4085 7.550906 TGTGTTTATCATCCACGTGAATTGATA 59.449 33.333 19.30 20.50 31.75 2.15
3425 4086 8.559536 GTGTTTATCATCCACGTGAATTGATAT 58.440 33.333 19.30 5.56 31.41 1.63
3426 4087 8.558700 TGTTTATCATCCACGTGAATTGATATG 58.441 33.333 19.30 8.63 31.41 1.78
3427 4088 8.773645 GTTTATCATCCACGTGAATTGATATGA 58.226 33.333 19.30 13.23 31.41 2.15
3428 4089 9.506018 TTTATCATCCACGTGAATTGATATGAT 57.494 29.630 19.30 18.24 36.88 2.45
3431 4092 9.676861 ATCATCCACGTGAATTGATATGATATT 57.323 29.630 19.30 0.00 32.56 1.28
3432 4093 8.938906 TCATCCACGTGAATTGATATGATATTG 58.061 33.333 19.30 0.00 0.00 1.90
3433 4094 8.938906 CATCCACGTGAATTGATATGATATTGA 58.061 33.333 19.30 0.00 0.00 2.57
3434 4095 8.900983 TCCACGTGAATTGATATGATATTGAA 57.099 30.769 19.30 0.00 0.00 2.69
3435 4096 8.992073 TCCACGTGAATTGATATGATATTGAAG 58.008 33.333 19.30 0.00 0.00 3.02
3436 4097 8.992073 CCACGTGAATTGATATGATATTGAAGA 58.008 33.333 19.30 0.00 0.00 2.87
3475 4136 8.823818 ACGTATTATATTTCTTTACACCACAGC 58.176 33.333 0.00 0.00 0.00 4.40
3476 4137 9.042008 CGTATTATATTTCTTTACACCACAGCT 57.958 33.333 0.00 0.00 0.00 4.24
3479 4140 6.992063 ATATTTCTTTACACCACAGCTCTG 57.008 37.500 0.00 0.00 0.00 3.35
3480 4141 4.415881 TTTCTTTACACCACAGCTCTGA 57.584 40.909 3.60 0.00 0.00 3.27
3481 4142 3.667497 TCTTTACACCACAGCTCTGAG 57.333 47.619 3.60 0.00 0.00 3.35
3482 4143 2.072298 CTTTACACCACAGCTCTGAGC 58.928 52.381 21.72 21.72 42.84 4.26
3492 4153 3.916061 GCTCTGAGCTCTGTAGACG 57.084 57.895 21.93 5.23 38.45 4.18
3493 4154 1.374560 GCTCTGAGCTCTGTAGACGA 58.625 55.000 21.93 0.00 38.45 4.20
3494 4155 1.946768 GCTCTGAGCTCTGTAGACGAT 59.053 52.381 21.93 0.00 38.45 3.73
3495 4156 2.286950 GCTCTGAGCTCTGTAGACGATG 60.287 54.545 21.93 0.00 38.45 3.84
3496 4157 2.942376 CTCTGAGCTCTGTAGACGATGT 59.058 50.000 16.19 0.00 0.00 3.06
3497 4158 4.123506 CTCTGAGCTCTGTAGACGATGTA 58.876 47.826 16.19 0.00 0.00 2.29
3498 4159 4.123506 TCTGAGCTCTGTAGACGATGTAG 58.876 47.826 16.19 0.00 0.00 2.74
3499 4160 3.206964 TGAGCTCTGTAGACGATGTAGG 58.793 50.000 16.19 0.00 0.00 3.18
3500 4161 3.118371 TGAGCTCTGTAGACGATGTAGGA 60.118 47.826 16.19 0.00 0.00 2.94
3501 4162 3.878103 GAGCTCTGTAGACGATGTAGGAA 59.122 47.826 6.43 0.00 0.00 3.36
3502 4163 4.465886 AGCTCTGTAGACGATGTAGGAAT 58.534 43.478 0.00 0.00 0.00 3.01
3503 4164 4.517453 AGCTCTGTAGACGATGTAGGAATC 59.483 45.833 0.00 0.00 0.00 2.52
3504 4165 4.517453 GCTCTGTAGACGATGTAGGAATCT 59.483 45.833 0.00 0.00 0.00 2.40
3505 4166 5.701750 GCTCTGTAGACGATGTAGGAATCTA 59.298 44.000 0.00 0.00 0.00 1.98
3506 4167 6.128391 GCTCTGTAGACGATGTAGGAATCTAG 60.128 46.154 0.00 0.00 0.00 2.43
3507 4168 7.063934 TCTGTAGACGATGTAGGAATCTAGA 57.936 40.000 0.00 0.00 0.00 2.43
3508 4169 7.506971 TCTGTAGACGATGTAGGAATCTAGAA 58.493 38.462 0.00 0.00 0.00 2.10
3509 4170 7.991460 TCTGTAGACGATGTAGGAATCTAGAAA 59.009 37.037 0.00 0.00 0.00 2.52
3510 4171 8.515695 TGTAGACGATGTAGGAATCTAGAAAA 57.484 34.615 0.00 0.00 0.00 2.29
3511 4172 8.404000 TGTAGACGATGTAGGAATCTAGAAAAC 58.596 37.037 0.00 0.00 0.00 2.43
3512 4173 7.648039 AGACGATGTAGGAATCTAGAAAACT 57.352 36.000 0.00 0.00 0.00 2.66
3513 4174 7.484975 AGACGATGTAGGAATCTAGAAAACTG 58.515 38.462 0.00 0.00 0.00 3.16
3514 4175 7.122948 AGACGATGTAGGAATCTAGAAAACTGT 59.877 37.037 0.00 0.00 0.00 3.55
3515 4176 8.289939 ACGATGTAGGAATCTAGAAAACTGTA 57.710 34.615 0.00 0.00 0.00 2.74
3516 4177 8.915036 ACGATGTAGGAATCTAGAAAACTGTAT 58.085 33.333 0.00 0.00 0.00 2.29
3517 4178 9.400638 CGATGTAGGAATCTAGAAAACTGTATC 57.599 37.037 0.00 3.65 0.00 2.24
3521 4182 9.400638 GTAGGAATCTAGAAAACTGTATCATCG 57.599 37.037 0.00 0.00 0.00 3.84
3522 4183 8.239038 AGGAATCTAGAAAACTGTATCATCGA 57.761 34.615 0.00 0.00 0.00 3.59
3523 4184 8.865090 AGGAATCTAGAAAACTGTATCATCGAT 58.135 33.333 0.00 0.00 0.00 3.59
3524 4185 9.134734 GGAATCTAGAAAACTGTATCATCGATC 57.865 37.037 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.361427 TGAACATCGCCGGAGATTAATTTA 58.639 37.500 18.94 7.36 0.00 1.40
1 2 4.196193 TGAACATCGCCGGAGATTAATTT 58.804 39.130 18.94 9.12 0.00 1.82
2 3 3.804036 TGAACATCGCCGGAGATTAATT 58.196 40.909 18.94 12.76 0.00 1.40
3 4 3.069586 TCTGAACATCGCCGGAGATTAAT 59.930 43.478 18.94 7.38 0.00 1.40
4 5 2.429250 TCTGAACATCGCCGGAGATTAA 59.571 45.455 18.94 0.00 0.00 1.40
5 6 2.028876 TCTGAACATCGCCGGAGATTA 58.971 47.619 18.94 4.66 0.00 1.75
6 7 0.824109 TCTGAACATCGCCGGAGATT 59.176 50.000 18.94 5.78 0.00 2.40
7 8 1.043816 ATCTGAACATCGCCGGAGAT 58.956 50.000 15.69 15.69 0.00 2.75
8 9 0.103026 CATCTGAACATCGCCGGAGA 59.897 55.000 11.31 11.31 0.00 3.71
9 10 0.103026 TCATCTGAACATCGCCGGAG 59.897 55.000 5.05 0.00 0.00 4.63
10 11 0.534873 TTCATCTGAACATCGCCGGA 59.465 50.000 5.05 0.00 0.00 5.14
11 12 0.933097 CTTCATCTGAACATCGCCGG 59.067 55.000 0.00 0.00 0.00 6.13
12 13 1.857217 CTCTTCATCTGAACATCGCCG 59.143 52.381 0.00 0.00 0.00 6.46
13 14 3.170791 TCTCTTCATCTGAACATCGCC 57.829 47.619 0.00 0.00 0.00 5.54
14 15 4.210955 GGATTCTCTTCATCTGAACATCGC 59.789 45.833 0.00 0.00 0.00 4.58
15 16 4.749099 GGGATTCTCTTCATCTGAACATCG 59.251 45.833 0.00 0.00 0.00 3.84
16 17 4.749099 CGGGATTCTCTTCATCTGAACATC 59.251 45.833 0.00 0.00 0.00 3.06
17 18 4.444022 CCGGGATTCTCTTCATCTGAACAT 60.444 45.833 0.00 0.00 0.00 2.71
18 19 3.118629 CCGGGATTCTCTTCATCTGAACA 60.119 47.826 0.00 0.00 0.00 3.18
19 20 3.462021 CCGGGATTCTCTTCATCTGAAC 58.538 50.000 0.00 0.00 0.00 3.18
152 153 1.471119 TCCAGTCTACCTTAGCCACG 58.529 55.000 0.00 0.00 0.00 4.94
194 195 1.190178 ACCCTAACAGTGACCGGTCC 61.190 60.000 31.19 21.56 0.00 4.46
197 198 1.067354 GTGTACCCTAACAGTGACCGG 60.067 57.143 0.00 0.00 0.00 5.28
323 324 2.492088 TCTAACGATAGCTATGGCGCAT 59.508 45.455 11.94 3.40 44.37 4.73
360 361 1.134610 AGTGTGGACTTCGAAACCGTT 60.135 47.619 13.78 0.00 0.00 4.44
362 363 1.137513 GAGTGTGGACTTCGAAACCG 58.862 55.000 13.78 0.00 30.16 4.44
410 411 3.138304 CCTTCCGTCATGTTGTTTGAGA 58.862 45.455 0.00 0.00 0.00 3.27
531 532 4.503714 TCTCAATGAGGTTAATGTCCCC 57.496 45.455 10.71 0.00 0.00 4.81
632 633 2.928757 CAACATACTGACTGAGAGCAGC 59.071 50.000 6.92 0.00 46.26 5.25
682 683 6.655003 TCTCAGATTGAACTACCAAAATGTCC 59.345 38.462 0.00 0.00 0.00 4.02
712 713 3.948196 TTTGGCGTACATAAATACCGC 57.052 42.857 0.00 0.00 0.00 5.68
731 732 6.980397 CAGCTTGAACTACCAAAATGTCTTTT 59.020 34.615 0.00 0.00 34.90 2.27
743 744 1.202770 ACCCACACAGCTTGAACTACC 60.203 52.381 3.37 0.00 0.00 3.18
745 746 2.571212 CAACCCACACAGCTTGAACTA 58.429 47.619 3.37 0.00 0.00 2.24
746 747 1.392589 CAACCCACACAGCTTGAACT 58.607 50.000 3.37 0.00 0.00 3.01
747 748 0.249031 GCAACCCACACAGCTTGAAC 60.249 55.000 3.37 0.00 0.00 3.18
748 749 1.391157 GGCAACCCACACAGCTTGAA 61.391 55.000 3.37 0.00 0.00 2.69
750 751 2.079020 CTGGCAACCCACACAGCTTG 62.079 60.000 0.00 0.00 35.79 4.01
751 752 1.829533 CTGGCAACCCACACAGCTT 60.830 57.895 0.00 0.00 35.79 3.74
752 753 2.203394 CTGGCAACCCACACAGCT 60.203 61.111 0.00 0.00 35.79 4.24
753 754 2.519302 ACTGGCAACCCACACAGC 60.519 61.111 0.00 0.00 35.79 4.40
754 755 2.195567 CCACTGGCAACCCACACAG 61.196 63.158 0.00 0.00 35.79 3.66
755 756 2.123939 CCACTGGCAACCCACACA 60.124 61.111 0.00 0.00 35.79 3.72
756 757 1.756561 AACCACTGGCAACCCACAC 60.757 57.895 0.00 0.00 35.79 3.82
757 758 1.756172 CAACCACTGGCAACCCACA 60.756 57.895 0.00 0.00 35.79 4.17
758 759 1.454847 TCAACCACTGGCAACCCAC 60.455 57.895 0.00 0.00 35.79 4.61
759 760 1.152777 CTCAACCACTGGCAACCCA 60.153 57.895 0.00 0.00 39.32 4.51
760 761 2.564721 GCTCAACCACTGGCAACCC 61.565 63.158 0.00 0.00 0.00 4.11
762 763 2.564721 GGGCTCAACCACTGGCAAC 61.565 63.158 0.00 0.00 42.05 4.17
763 764 2.203480 GGGCTCAACCACTGGCAA 60.203 61.111 0.00 0.00 42.05 4.52
764 765 2.981914 CTTGGGCTCAACCACTGGCA 62.982 60.000 0.00 0.00 41.03 4.92
766 767 0.038744 ATCTTGGGCTCAACCACTGG 59.961 55.000 0.00 0.00 41.03 4.00
767 768 1.171308 CATCTTGGGCTCAACCACTG 58.829 55.000 0.00 0.00 41.03 3.66
768 769 1.004044 CTCATCTTGGGCTCAACCACT 59.996 52.381 0.00 0.00 41.03 4.00
770 771 0.322816 GCTCATCTTGGGCTCAACCA 60.323 55.000 0.00 0.00 41.63 3.67
772 773 1.034292 GGGCTCATCTTGGGCTCAAC 61.034 60.000 0.00 0.00 45.79 3.18
773 774 1.304282 GGGCTCATCTTGGGCTCAA 59.696 57.895 0.00 0.00 45.79 3.02
775 776 2.203126 CGGGCTCATCTTGGGCTC 60.203 66.667 0.00 0.00 45.01 4.70
776 777 3.801997 CCGGGCTCATCTTGGGCT 61.802 66.667 0.00 0.00 45.01 5.19
777 778 4.883354 CCCGGGCTCATCTTGGGC 62.883 72.222 8.08 0.00 44.90 5.36
778 779 4.195334 CCCCGGGCTCATCTTGGG 62.195 72.222 17.73 0.00 39.69 4.12
779 780 4.195334 CCCCCGGGCTCATCTTGG 62.195 72.222 17.73 3.94 0.00 3.61
780 781 3.089874 TCCCCCGGGCTCATCTTG 61.090 66.667 17.73 0.00 34.68 3.02
782 783 4.888325 CCTCCCCCGGGCTCATCT 62.888 72.222 17.73 0.00 34.68 2.90
784 785 4.888325 CTCCTCCCCCGGGCTCAT 62.888 72.222 17.73 0.00 34.68 2.90
790 791 4.101448 CACTTGCTCCTCCCCCGG 62.101 72.222 0.00 0.00 0.00 5.73
791 792 3.003173 TCACTTGCTCCTCCCCCG 61.003 66.667 0.00 0.00 0.00 5.73
792 793 2.671682 GTCACTTGCTCCTCCCCC 59.328 66.667 0.00 0.00 0.00 5.40
794 795 0.393537 CATGGTCACTTGCTCCTCCC 60.394 60.000 0.00 0.00 0.00 4.30
795 796 0.326264 ACATGGTCACTTGCTCCTCC 59.674 55.000 0.00 0.00 0.00 4.30
796 797 1.002430 TGACATGGTCACTTGCTCCTC 59.998 52.381 0.00 0.00 37.67 3.71
797 798 1.059098 TGACATGGTCACTTGCTCCT 58.941 50.000 0.00 0.00 37.67 3.69
800 801 4.460382 CCTTAAATGACATGGTCACTTGCT 59.540 41.667 0.49 0.00 45.65 3.91
801 802 4.458989 TCCTTAAATGACATGGTCACTTGC 59.541 41.667 0.49 0.00 45.65 4.01
802 803 6.573664 TTCCTTAAATGACATGGTCACTTG 57.426 37.500 0.49 0.00 45.65 3.16
803 804 7.671398 AGAATTCCTTAAATGACATGGTCACTT 59.329 33.333 0.65 0.00 45.65 3.16
806 1399 8.055279 GAAGAATTCCTTAAATGACATGGTCA 57.945 34.615 0.65 1.05 42.44 4.02
832 1425 3.554670 GAAGCGTTCGTAGTTGCATAG 57.445 47.619 0.00 0.00 0.00 2.23
848 1441 2.821810 GCAGGCCTTCCTCGAAGC 60.822 66.667 0.00 0.00 41.93 3.86
861 1454 2.202974 TCTATGCAGCAGCGCAGG 60.203 61.111 11.47 1.51 46.99 4.85
868 1461 0.104855 CGGTAAGCCTCTATGCAGCA 59.895 55.000 0.00 0.00 0.00 4.41
950 1543 4.445545 CCAAGGTTTCGAGCGCGC 62.446 66.667 26.66 26.66 37.46 6.86
963 1556 0.916358 ATCACAGGAGGTCCCCCAAG 60.916 60.000 0.00 0.00 36.42 3.61
990 1583 1.639298 GCTTTCGCATCAGCCGTTCT 61.639 55.000 0.00 0.00 37.52 3.01
1193 1786 4.410400 CCCCAAGCTCCACGGTCC 62.410 72.222 0.00 0.00 0.00 4.46
1195 1788 1.789576 AATTCCCCAAGCTCCACGGT 61.790 55.000 0.00 0.00 0.00 4.83
1196 1789 0.611896 AAATTCCCCAAGCTCCACGG 60.612 55.000 0.00 0.00 0.00 4.94
1198 1791 2.166459 GCTTAAATTCCCCAAGCTCCAC 59.834 50.000 0.00 0.00 41.14 4.02
1199 1792 2.456577 GCTTAAATTCCCCAAGCTCCA 58.543 47.619 0.00 0.00 41.14 3.86
1201 1794 2.456577 TGGCTTAAATTCCCCAAGCTC 58.543 47.619 5.61 0.00 43.33 4.09
1203 1796 3.737972 CGATTGGCTTAAATTCCCCAAGC 60.738 47.826 0.00 0.00 43.12 4.01
1213 1806 5.522460 CGATAAGAAGGTCGATTGGCTTAAA 59.478 40.000 0.00 0.00 40.11 1.52
1242 1835 4.869440 CTCAGCTGCTCCGCCTCG 62.869 72.222 9.47 0.00 0.00 4.63
1264 1857 2.095668 GCAGAGGTATCGGTATCTCACG 60.096 54.545 18.07 9.53 39.99 4.35
1270 1863 1.687123 GGTGTGCAGAGGTATCGGTAT 59.313 52.381 0.00 0.00 0.00 2.73
1272 1865 1.898154 GGTGTGCAGAGGTATCGGT 59.102 57.895 0.00 0.00 0.00 4.69
1278 1871 3.161450 ACACCGGTGTGCAGAGGT 61.161 61.111 38.46 12.15 46.86 3.85
1287 1880 3.118454 GTGCGATGGACACCGGTG 61.118 66.667 32.83 32.83 31.67 4.94
1298 1891 0.745845 GCCAATGAGGACAGTGCGAT 60.746 55.000 0.00 0.00 40.20 4.58
1303 1896 1.079819 CGTCGCCAATGAGGACAGT 60.080 57.895 4.94 0.00 41.22 3.55
1314 1907 0.942410 GTAACTTGCAGTCGTCGCCA 60.942 55.000 0.00 0.00 0.00 5.69
1323 1916 1.017177 TTAGCGCCGGTAACTTGCAG 61.017 55.000 2.29 0.00 32.79 4.41
1325 1918 0.303796 GATTAGCGCCGGTAACTTGC 59.696 55.000 11.30 0.00 0.00 4.01
1327 1920 2.389962 TTGATTAGCGCCGGTAACTT 57.610 45.000 11.30 0.00 0.00 2.66
1337 1930 2.228822 ACCACCTTGCTTTTGATTAGCG 59.771 45.455 0.00 0.00 41.54 4.26
1338 1931 3.507622 AGACCACCTTGCTTTTGATTAGC 59.492 43.478 0.00 0.00 39.10 3.09
1342 1935 4.218312 AGAAAGACCACCTTGCTTTTGAT 58.782 39.130 0.00 0.00 37.49 2.57
1350 1943 3.954258 AGTTGGAAAGAAAGACCACCTTG 59.046 43.478 0.00 0.00 34.79 3.61
1366 1959 5.251932 TCATGTTTGTATAGGGGAAGTTGGA 59.748 40.000 0.00 0.00 0.00 3.53
1374 1967 5.380043 AGCAAGATCATGTTTGTATAGGGG 58.620 41.667 0.00 0.00 0.00 4.79
1383 1976 7.495055 AGAGAAAAACAAGCAAGATCATGTTT 58.505 30.769 0.00 0.00 45.17 2.83
1418 2012 4.202121 ACATTACAAGACTGACTGTGTCGT 60.202 41.667 0.00 0.00 39.24 4.34
1419 2013 4.299155 ACATTACAAGACTGACTGTGTCG 58.701 43.478 0.00 0.00 39.24 4.35
1445 2039 5.536554 CTGCAAGGTACAATAGAGTTGTG 57.463 43.478 3.83 0.00 34.11 3.33
1488 2082 0.541998 TCTCGAACAGGCTTCTCCCA 60.542 55.000 0.00 0.00 34.51 4.37
1490 2084 0.174617 CCTCTCGAACAGGCTTCTCC 59.825 60.000 0.00 0.00 0.00 3.71
1518 2112 1.204146 GGTGCCTAGGATGTCCAAGA 58.796 55.000 14.75 0.00 38.89 3.02
1553 2147 0.105709 TATCTCCGGGTGCATCCTGA 60.106 55.000 15.59 12.63 45.09 3.86
1605 2199 0.548926 TGGGGCCATCTGTCACCTTA 60.549 55.000 4.39 0.00 0.00 2.69
1730 2324 2.182791 CGTCGCTCAGGCTCATGT 59.817 61.111 0.00 0.00 36.09 3.21
1914 2508 0.673644 GCTAGCTTTTGTCCCGAGCA 60.674 55.000 7.70 0.00 38.85 4.26
1952 2546 1.137404 GTGGCCTTGCGCATTGTAG 59.863 57.895 12.75 5.15 40.31 2.74
1966 2560 3.746949 CTCTCCTGGATGGCGTGGC 62.747 68.421 0.00 0.00 35.26 5.01
2034 2628 1.666872 CCACGGTCCGAACCTTCAC 60.667 63.158 20.51 0.00 44.04 3.18
2044 2638 3.714001 GGAACCCCTCCACGGTCC 61.714 72.222 0.00 0.00 44.67 4.46
2112 2706 4.303993 CAACCCGACCGACCCGTT 62.304 66.667 0.00 0.00 0.00 4.44
2162 2756 2.113139 ACTCACTTTGCCCGGGTG 59.887 61.111 24.63 12.48 0.00 4.61
2200 2794 6.016360 CCCAAATTGTTCTATGTGACTGAACA 60.016 38.462 12.49 12.49 45.31 3.18
2201 2795 6.381801 CCCAAATTGTTCTATGTGACTGAAC 58.618 40.000 8.77 8.77 40.09 3.18
2202 2796 5.048083 GCCCAAATTGTTCTATGTGACTGAA 60.048 40.000 0.00 0.00 0.00 3.02
2203 2797 4.458989 GCCCAAATTGTTCTATGTGACTGA 59.541 41.667 0.00 0.00 0.00 3.41
2204 2798 4.380867 GGCCCAAATTGTTCTATGTGACTG 60.381 45.833 0.00 0.00 0.00 3.51
2205 2799 3.763897 GGCCCAAATTGTTCTATGTGACT 59.236 43.478 0.00 0.00 0.00 3.41
2214 2808 4.329462 TTTACAGTGGCCCAAATTGTTC 57.671 40.909 0.00 0.00 0.00 3.18
2237 2831 4.089493 CACAATGTCGATCGTCGTTAGTTT 59.911 41.667 17.30 2.84 41.35 2.66
2238 2832 3.606777 CACAATGTCGATCGTCGTTAGTT 59.393 43.478 17.30 4.92 41.35 2.24
2239 2833 3.168963 CACAATGTCGATCGTCGTTAGT 58.831 45.455 17.30 14.59 41.35 2.24
2246 2840 2.479837 ACACAACACAATGTCGATCGT 58.520 42.857 15.94 0.00 0.00 3.73
2257 2851 5.240623 GGATGGAAGAACATAACACAACACA 59.759 40.000 0.00 0.00 0.00 3.72
2258 2852 5.616866 CGGATGGAAGAACATAACACAACAC 60.617 44.000 0.00 0.00 0.00 3.32
2260 2854 4.671766 GCGGATGGAAGAACATAACACAAC 60.672 45.833 0.00 0.00 0.00 3.32
2261 2855 3.438781 GCGGATGGAAGAACATAACACAA 59.561 43.478 0.00 0.00 0.00 3.33
2265 2859 2.614057 CCTGCGGATGGAAGAACATAAC 59.386 50.000 0.00 0.00 0.00 1.89
2266 2860 2.917933 CCTGCGGATGGAAGAACATAA 58.082 47.619 0.00 0.00 0.00 1.90
2268 2862 0.749454 GCCTGCGGATGGAAGAACAT 60.749 55.000 0.00 0.00 0.00 2.71
2269 2863 1.377202 GCCTGCGGATGGAAGAACA 60.377 57.895 0.00 0.00 0.00 3.18
2324 2922 1.144565 CCAGATCGTCTTGCTGCTCG 61.145 60.000 0.00 1.22 0.00 5.03
2346 2944 3.195698 GCGTCGGCCACAATCTCC 61.196 66.667 2.24 0.00 0.00 3.71
2352 2950 4.243008 TCCTTTGCGTCGGCCACA 62.243 61.111 2.24 0.00 38.85 4.17
2370 2968 1.133407 CAGTCGTAGAAGCACCCTCTC 59.867 57.143 0.00 0.00 39.69 3.20
2385 2983 1.284982 CCTTGTCCTCGTTGCAGTCG 61.285 60.000 6.98 6.98 0.00 4.18
2395 2993 2.182030 CGCGAGGTCCTTGTCCTC 59.818 66.667 0.00 2.27 45.56 3.71
2418 3016 4.842091 ACCACGGCGTCGCGTATC 62.842 66.667 10.85 0.00 40.63 2.24
2441 3039 5.828299 TTGTCCAATTAATTCATCCGACC 57.172 39.130 0.00 0.00 0.00 4.79
2443 3041 6.238731 GCAGATTGTCCAATTAATTCATCCGA 60.239 38.462 0.00 0.00 0.00 4.55
2453 3051 4.323417 ACGTTGAGCAGATTGTCCAATTA 58.677 39.130 0.00 0.00 0.00 1.40
2456 3054 2.254546 ACGTTGAGCAGATTGTCCAA 57.745 45.000 0.00 0.00 0.00 3.53
2474 3079 3.696898 CCTATACGAGTGTGCTCTCAAC 58.303 50.000 0.00 0.00 39.53 3.18
2476 3081 1.676529 GCCTATACGAGTGTGCTCTCA 59.323 52.381 0.00 0.00 39.53 3.27
2477 3082 1.334239 CGCCTATACGAGTGTGCTCTC 60.334 57.143 0.00 0.00 39.53 3.20
2479 3084 0.317938 CCGCCTATACGAGTGTGCTC 60.318 60.000 0.00 0.00 38.35 4.26
2484 3089 2.050351 CGCCCGCCTATACGAGTG 60.050 66.667 0.00 0.00 34.06 3.51
2485 3090 3.292936 CCGCCCGCCTATACGAGT 61.293 66.667 0.00 0.00 34.06 4.18
2486 3091 4.052229 CCCGCCCGCCTATACGAG 62.052 72.222 0.00 0.00 34.06 4.18
2497 3102 0.976641 TAGATCATGATCACCCGCCC 59.023 55.000 31.99 8.36 40.22 6.13
2498 3103 1.066573 CCTAGATCATGATCACCCGCC 60.067 57.143 31.99 9.06 40.22 6.13
2499 3104 1.066573 CCCTAGATCATGATCACCCGC 60.067 57.143 31.99 9.75 40.22 6.13
2500 3105 2.251818 ACCCTAGATCATGATCACCCG 58.748 52.381 31.99 20.15 40.22 5.28
2501 3106 3.193691 CGTACCCTAGATCATGATCACCC 59.806 52.174 31.99 10.80 40.22 4.61
2502 3107 4.079970 TCGTACCCTAGATCATGATCACC 58.920 47.826 31.99 11.15 40.22 4.02
2503 3108 5.707242 TTCGTACCCTAGATCATGATCAC 57.293 43.478 31.99 20.62 40.22 3.06
2504 3109 6.010219 TCATTCGTACCCTAGATCATGATCA 58.990 40.000 31.99 19.06 40.22 2.92
2507 3112 5.010719 GGTTCATTCGTACCCTAGATCATGA 59.989 44.000 0.00 0.00 0.00 3.07
2531 3136 4.804139 CGACTTAACAAGTACCAGGCATAG 59.196 45.833 0.00 0.00 43.03 2.23
2532 3137 4.463539 TCGACTTAACAAGTACCAGGCATA 59.536 41.667 0.00 0.00 43.03 3.14
2534 3139 2.629137 TCGACTTAACAAGTACCAGGCA 59.371 45.455 0.00 0.00 43.03 4.75
2535 3140 3.057033 TCTCGACTTAACAAGTACCAGGC 60.057 47.826 0.00 0.00 43.03 4.85
2539 3144 5.382618 TCCTTCTCGACTTAACAAGTACC 57.617 43.478 0.00 0.00 43.03 3.34
2542 3147 4.100498 TGGTTCCTTCTCGACTTAACAAGT 59.900 41.667 0.00 0.00 46.38 3.16
2548 3153 3.618997 GCCATTGGTTCCTTCTCGACTTA 60.619 47.826 4.26 0.00 0.00 2.24
2553 3158 1.369091 CGGCCATTGGTTCCTTCTCG 61.369 60.000 2.24 0.00 0.00 4.04
2556 3161 1.202348 CTTTCGGCCATTGGTTCCTTC 59.798 52.381 2.24 0.00 0.00 3.46
2559 3164 1.474330 ATCTTTCGGCCATTGGTTCC 58.526 50.000 2.24 0.00 0.00 3.62
2562 3167 2.214376 TGAATCTTTCGGCCATTGGT 57.786 45.000 2.24 0.00 0.00 3.67
2569 3174 1.106285 AAGGCCATGAATCTTTCGGC 58.894 50.000 5.01 0.00 42.21 5.54
2579 3195 3.620488 GTCCAACAGATTAAGGCCATGA 58.380 45.455 5.01 0.00 0.00 3.07
2585 3201 4.225267 ACCTACTGGTCCAACAGATTAAGG 59.775 45.833 0.00 2.68 44.78 2.69
2591 3207 0.685097 GCACCTACTGGTCCAACAGA 59.315 55.000 0.00 0.00 46.60 3.41
2602 3218 2.663196 GAAGTGGCGGCACCTACT 59.337 61.111 35.34 19.31 40.22 2.57
2607 3223 2.626780 GGAAAGGAAGTGGCGGCAC 61.627 63.158 32.77 32.77 0.00 5.01
2609 3225 2.034221 AGGAAAGGAAGTGGCGGC 59.966 61.111 0.00 0.00 0.00 6.53
2610 3226 2.335712 GCAGGAAAGGAAGTGGCGG 61.336 63.158 0.00 0.00 0.00 6.13
2611 3227 1.172180 TTGCAGGAAAGGAAGTGGCG 61.172 55.000 0.00 0.00 0.00 5.69
2612 3228 0.600057 CTTGCAGGAAAGGAAGTGGC 59.400 55.000 0.00 0.00 32.95 5.01
2613 3229 2.276732 TCTTGCAGGAAAGGAAGTGG 57.723 50.000 0.00 0.00 38.04 4.00
2614 3230 3.192212 GGATTCTTGCAGGAAAGGAAGTG 59.808 47.826 15.81 0.00 38.04 3.16
2615 3231 3.181429 TGGATTCTTGCAGGAAAGGAAGT 60.181 43.478 15.81 0.00 38.04 3.01
2623 3249 4.012374 GTTCATCTTGGATTCTTGCAGGA 58.988 43.478 0.00 0.00 33.90 3.86
2641 3267 7.998383 ACCAGCCATAATTTCATATGTAGTTCA 59.002 33.333 1.90 0.00 32.48 3.18
2647 3273 6.045459 TCCCTACCAGCCATAATTTCATATGT 59.955 38.462 1.90 0.00 32.48 2.29
2648 3274 6.484288 TCCCTACCAGCCATAATTTCATATG 58.516 40.000 0.00 0.00 33.85 1.78
2662 3298 0.828677 ACAACCGTATCCCTACCAGC 59.171 55.000 0.00 0.00 0.00 4.85
2674 3310 0.941542 CGGAATTGACACACAACCGT 59.058 50.000 0.00 0.00 40.70 4.83
2692 3328 2.254703 AAGAGTAGCAGACCGACGCG 62.255 60.000 3.53 3.53 0.00 6.01
2696 3332 0.039180 TCCCAAGAGTAGCAGACCGA 59.961 55.000 0.00 0.00 0.00 4.69
2698 3334 0.827368 CCTCCCAAGAGTAGCAGACC 59.173 60.000 0.00 0.00 38.58 3.85
2700 3336 0.978146 GGCCTCCCAAGAGTAGCAGA 60.978 60.000 0.00 0.00 38.58 4.26
2701 3337 1.267574 TGGCCTCCCAAGAGTAGCAG 61.268 60.000 3.32 0.00 38.46 4.24
2702 3338 0.840288 TTGGCCTCCCAAGAGTAGCA 60.840 55.000 3.32 0.00 46.01 3.49
2703 3339 1.991230 TTGGCCTCCCAAGAGTAGC 59.009 57.895 3.32 0.00 46.01 3.58
2712 3348 0.962855 GCTTCTTCAGTTGGCCTCCC 60.963 60.000 3.32 0.00 0.00 4.30
2725 3361 1.537202 CTGCGCCTACAAAAGCTTCTT 59.463 47.619 4.18 0.00 0.00 2.52
2726 3362 1.160137 CTGCGCCTACAAAAGCTTCT 58.840 50.000 4.18 0.00 0.00 2.85
2727 3363 1.129437 CTCTGCGCCTACAAAAGCTTC 59.871 52.381 4.18 0.00 0.00 3.86
2728 3364 1.160137 CTCTGCGCCTACAAAAGCTT 58.840 50.000 4.18 0.00 0.00 3.74
2729 3365 0.321671 TCTCTGCGCCTACAAAAGCT 59.678 50.000 4.18 0.00 0.00 3.74
2731 3367 2.548057 TGTTTCTCTGCGCCTACAAAAG 59.452 45.455 4.18 0.00 0.00 2.27
2732 3368 2.566913 TGTTTCTCTGCGCCTACAAAA 58.433 42.857 4.18 0.00 0.00 2.44
2733 3369 2.248280 TGTTTCTCTGCGCCTACAAA 57.752 45.000 4.18 0.00 0.00 2.83
2734 3370 2.076100 CATGTTTCTCTGCGCCTACAA 58.924 47.619 4.18 0.00 0.00 2.41
2735 3371 1.675714 CCATGTTTCTCTGCGCCTACA 60.676 52.381 4.18 0.07 0.00 2.74
2736 3372 1.009829 CCATGTTTCTCTGCGCCTAC 58.990 55.000 4.18 0.00 0.00 3.18
2738 3374 0.957395 CACCATGTTTCTCTGCGCCT 60.957 55.000 4.18 0.00 0.00 5.52
2739 3375 0.955428 TCACCATGTTTCTCTGCGCC 60.955 55.000 4.18 0.00 0.00 6.53
2740 3376 0.166814 GTCACCATGTTTCTCTGCGC 59.833 55.000 0.00 0.00 0.00 6.09
2741 3377 1.195448 GTGTCACCATGTTTCTCTGCG 59.805 52.381 0.00 0.00 0.00 5.18
2742 3378 1.537202 GGTGTCACCATGTTTCTCTGC 59.463 52.381 17.59 0.00 38.42 4.26
2743 3379 1.800586 CGGTGTCACCATGTTTCTCTG 59.199 52.381 21.91 0.00 38.47 3.35
2744 3380 1.691976 TCGGTGTCACCATGTTTCTCT 59.308 47.619 21.91 0.00 38.47 3.10
2745 3381 2.163818 TCGGTGTCACCATGTTTCTC 57.836 50.000 21.91 0.00 38.47 2.87
2746 3382 2.158813 AGTTCGGTGTCACCATGTTTCT 60.159 45.455 21.91 7.82 38.47 2.52
2747 3383 2.032030 CAGTTCGGTGTCACCATGTTTC 60.032 50.000 21.91 5.81 38.47 2.78
2748 3384 1.946768 CAGTTCGGTGTCACCATGTTT 59.053 47.619 21.91 0.30 38.47 2.83
2749 3385 1.134220 ACAGTTCGGTGTCACCATGTT 60.134 47.619 21.91 1.73 38.47 2.71
2750 3386 0.468226 ACAGTTCGGTGTCACCATGT 59.532 50.000 21.91 15.96 38.47 3.21
2751 3387 2.448926 TACAGTTCGGTGTCACCATG 57.551 50.000 21.91 15.37 38.47 3.66
2752 3388 2.870435 GCTTACAGTTCGGTGTCACCAT 60.870 50.000 21.91 1.66 38.47 3.55
2753 3389 1.539496 GCTTACAGTTCGGTGTCACCA 60.539 52.381 21.91 6.45 38.47 4.17
2754 3390 1.145803 GCTTACAGTTCGGTGTCACC 58.854 55.000 12.40 12.40 34.05 4.02
2755 3391 1.145803 GGCTTACAGTTCGGTGTCAC 58.854 55.000 0.00 0.00 31.46 3.67
2756 3392 1.045407 AGGCTTACAGTTCGGTGTCA 58.955 50.000 0.00 0.00 31.46 3.58
2757 3393 1.798813 CAAGGCTTACAGTTCGGTGTC 59.201 52.381 0.00 0.00 31.46 3.67
2758 3394 1.414919 TCAAGGCTTACAGTTCGGTGT 59.585 47.619 0.00 0.00 34.21 4.16
2759 3395 2.069273 CTCAAGGCTTACAGTTCGGTG 58.931 52.381 0.00 0.00 0.00 4.94
2760 3396 1.968493 TCTCAAGGCTTACAGTTCGGT 59.032 47.619 0.00 0.00 0.00 4.69
2761 3397 2.028930 AGTCTCAAGGCTTACAGTTCGG 60.029 50.000 0.00 0.00 0.00 4.30
2762 3398 2.989840 CAGTCTCAAGGCTTACAGTTCG 59.010 50.000 0.00 0.00 0.00 3.95
2763 3399 2.739379 GCAGTCTCAAGGCTTACAGTTC 59.261 50.000 0.00 0.00 0.00 3.01
2764 3400 2.551071 GGCAGTCTCAAGGCTTACAGTT 60.551 50.000 0.00 0.00 0.00 3.16
2765 3401 1.002544 GGCAGTCTCAAGGCTTACAGT 59.997 52.381 0.00 0.00 0.00 3.55
2769 3405 0.902984 TCCGGCAGTCTCAAGGCTTA 60.903 55.000 0.00 0.00 0.00 3.09
2779 3415 0.321653 ACAATGGACTTCCGGCAGTC 60.322 55.000 24.14 24.14 42.34 3.51
2782 3418 0.400213 AGAACAATGGACTTCCGGCA 59.600 50.000 0.00 0.00 39.43 5.69
2783 3419 1.087501 GAGAACAATGGACTTCCGGC 58.912 55.000 0.00 0.00 39.43 6.13
2784 3420 1.679032 GGGAGAACAATGGACTTCCGG 60.679 57.143 0.00 0.00 39.43 5.14
2785 3421 1.679032 GGGGAGAACAATGGACTTCCG 60.679 57.143 0.00 0.00 39.43 4.30
2786 3422 1.636003 AGGGGAGAACAATGGACTTCC 59.364 52.381 0.00 0.00 0.00 3.46
2787 3423 2.040412 ACAGGGGAGAACAATGGACTTC 59.960 50.000 0.00 0.00 0.00 3.01
2788 3424 2.040412 GACAGGGGAGAACAATGGACTT 59.960 50.000 0.00 0.00 0.00 3.01
2789 3425 1.630878 GACAGGGGAGAACAATGGACT 59.369 52.381 0.00 0.00 0.00 3.85
2790 3426 1.340114 GGACAGGGGAGAACAATGGAC 60.340 57.143 0.00 0.00 0.00 4.02
2791 3427 0.991920 GGACAGGGGAGAACAATGGA 59.008 55.000 0.00 0.00 0.00 3.41
2794 3430 0.995024 CAGGGACAGGGGAGAACAAT 59.005 55.000 0.00 0.00 0.00 2.71
2803 3439 3.583228 TGTGGTATATACAGGGACAGGG 58.417 50.000 14.70 0.00 0.00 4.45
2841 3477 9.320295 ACCCTCTTTACCAAAATCATAAAATGA 57.680 29.630 0.00 0.00 44.55 2.57
2842 3478 9.942850 AACCCTCTTTACCAAAATCATAAAATG 57.057 29.630 0.00 0.00 0.00 2.32
2846 3482 8.129496 GGAAACCCTCTTTACCAAAATCATAA 57.871 34.615 0.00 0.00 0.00 1.90
2847 3483 7.712204 GGAAACCCTCTTTACCAAAATCATA 57.288 36.000 0.00 0.00 0.00 2.15
2848 3484 6.605471 GGAAACCCTCTTTACCAAAATCAT 57.395 37.500 0.00 0.00 0.00 2.45
2866 3504 3.425162 AGTTGACATCAGAGGGGAAAC 57.575 47.619 0.00 0.00 0.00 2.78
2869 3507 3.455910 CCAATAGTTGACATCAGAGGGGA 59.544 47.826 0.00 0.00 0.00 4.81
2873 3511 4.095483 GGTTGCCAATAGTTGACATCAGAG 59.905 45.833 0.00 0.00 0.00 3.35
2880 3518 1.885887 TGCTGGTTGCCAATAGTTGAC 59.114 47.619 0.00 0.00 42.00 3.18
2890 3528 1.876156 GACTATATGCTGCTGGTTGCC 59.124 52.381 0.00 0.00 42.00 4.52
2905 3543 9.810545 GAAAACTGAAAGAGCACTATAGACTAT 57.189 33.333 6.78 0.00 37.43 2.12
2907 3545 7.902087 AGAAAACTGAAAGAGCACTATAGACT 58.098 34.615 6.78 3.15 37.43 3.24
2908 3546 8.541133 AAGAAAACTGAAAGAGCACTATAGAC 57.459 34.615 6.78 0.00 37.43 2.59
2909 3547 9.561069 AAAAGAAAACTGAAAGAGCACTATAGA 57.439 29.630 6.78 0.00 37.43 1.98
2910 3548 9.604626 CAAAAGAAAACTGAAAGAGCACTATAG 57.395 33.333 0.00 0.00 37.43 1.31
2911 3549 9.337396 TCAAAAGAAAACTGAAAGAGCACTATA 57.663 29.630 0.00 0.00 37.43 1.31
2912 3550 8.225603 TCAAAAGAAAACTGAAAGAGCACTAT 57.774 30.769 0.00 0.00 37.43 2.12
2922 3564 7.425606 GCTACCAAGATCAAAAGAAAACTGAA 58.574 34.615 0.00 0.00 0.00 3.02
2927 3569 6.916360 ATGGCTACCAAGATCAAAAGAAAA 57.084 33.333 0.00 0.00 36.95 2.29
2930 3572 5.569355 TCAATGGCTACCAAGATCAAAAGA 58.431 37.500 0.00 0.00 36.95 2.52
2933 3575 5.508567 TCATCAATGGCTACCAAGATCAAA 58.491 37.500 0.00 0.00 36.95 2.69
2935 3577 4.776435 TCATCAATGGCTACCAAGATCA 57.224 40.909 0.00 0.00 36.95 2.92
2939 3581 4.460382 ACACTTTCATCAATGGCTACCAAG 59.540 41.667 0.00 0.00 36.95 3.61
2945 3587 3.763897 GGGTAACACTTTCATCAATGGCT 59.236 43.478 0.00 0.00 39.74 4.75
2951 3593 3.500448 TGCAGGGTAACACTTTCATCA 57.500 42.857 0.00 0.00 39.74 3.07
2955 3597 2.295909 TGCATTGCAGGGTAACACTTTC 59.704 45.455 7.38 0.00 32.36 2.62
2956 3598 2.315176 TGCATTGCAGGGTAACACTTT 58.685 42.857 7.38 0.00 32.36 2.66
2958 3600 1.820519 CATGCATTGCAGGGTAACACT 59.179 47.619 17.52 0.00 43.65 3.55
2967 3609 4.324267 TCATCTAGATCCATGCATTGCAG 58.676 43.478 17.52 8.97 43.65 4.41
2968 3610 4.360951 TCATCTAGATCCATGCATTGCA 57.639 40.909 14.72 14.72 44.86 4.08
2970 3612 4.156190 GGCTTCATCTAGATCCATGCATTG 59.844 45.833 1.03 0.00 0.00 2.82
2971 3613 4.202535 TGGCTTCATCTAGATCCATGCATT 60.203 41.667 1.03 0.00 0.00 3.56
2978 3630 3.244491 ACATGCTGGCTTCATCTAGATCC 60.244 47.826 1.03 1.58 0.00 3.36
3000 3652 4.919793 TCTTCGTCTCCCTCTTTCTTCTA 58.080 43.478 0.00 0.00 0.00 2.10
3009 3664 1.399089 CTTCGACTCTTCGTCTCCCTC 59.601 57.143 0.00 0.00 46.01 4.30
3012 3667 2.793237 GCATCTTCGACTCTTCGTCTCC 60.793 54.545 0.00 0.00 46.01 3.71
3023 3678 1.129437 GCAGTTCCAAGCATCTTCGAC 59.871 52.381 0.00 0.00 0.00 4.20
3025 3680 1.159285 TGCAGTTCCAAGCATCTTCG 58.841 50.000 0.00 0.00 35.51 3.79
3051 3706 8.924511 TCAAGAGAACAAAATTAATCACCTCT 57.075 30.769 0.00 0.00 0.00 3.69
3055 3710 9.994432 ATCGATCAAGAGAACAAAATTAATCAC 57.006 29.630 0.00 0.00 0.00 3.06
3066 3721 6.456795 ACATGTAGATCGATCAAGAGAACA 57.543 37.500 26.47 18.31 0.00 3.18
3083 3738 4.255301 GGTGACCGAATAACCAACATGTA 58.745 43.478 0.00 0.00 33.94 2.29
3088 3743 1.808343 GGTGGTGACCGAATAACCAAC 59.192 52.381 3.41 0.00 45.26 3.77
3112 3767 1.261619 GTACACTGCAGACACAGCAAC 59.738 52.381 23.35 3.06 42.17 4.17
3153 3808 2.113860 AATCCACAACTACAGCGCAT 57.886 45.000 11.47 0.00 0.00 4.73
3171 3826 6.935741 ATTAACTCAACACACTGCTACAAA 57.064 33.333 0.00 0.00 0.00 2.83
3173 3828 6.018262 GTGAATTAACTCAACACACTGCTACA 60.018 38.462 0.00 0.00 0.00 2.74
3206 3861 1.734388 GCACCCAACCACAGGAACAC 61.734 60.000 0.00 0.00 0.00 3.32
3210 3865 1.426251 ATCAGCACCCAACCACAGGA 61.426 55.000 0.00 0.00 0.00 3.86
3231 3886 4.461081 AGCTGGAGACTGACTAACTAACTG 59.539 45.833 0.00 0.00 0.00 3.16
3232 3887 4.668636 AGCTGGAGACTGACTAACTAACT 58.331 43.478 0.00 0.00 0.00 2.24
3233 3888 5.394224 AAGCTGGAGACTGACTAACTAAC 57.606 43.478 0.00 0.00 0.00 2.34
3234 3889 5.775701 AGAAAGCTGGAGACTGACTAACTAA 59.224 40.000 0.00 0.00 0.00 2.24
3235 3890 5.184096 CAGAAAGCTGGAGACTGACTAACTA 59.816 44.000 0.00 0.00 38.51 2.24
3250 3905 1.648467 GCCGCCTAACCAGAAAGCTG 61.648 60.000 0.00 0.00 41.93 4.24
3270 3931 3.009143 AGAAGGAACCATCTTAAACGGCT 59.991 43.478 0.00 0.00 0.00 5.52
3274 3935 5.535030 ACCAACAGAAGGAACCATCTTAAAC 59.465 40.000 0.00 0.00 0.00 2.01
3291 3952 1.875514 CACACCAGACATCACCAACAG 59.124 52.381 0.00 0.00 0.00 3.16
3297 3958 1.269723 TCTCGACACACCAGACATCAC 59.730 52.381 0.00 0.00 0.00 3.06
3300 3961 2.562738 TGATTCTCGACACACCAGACAT 59.437 45.455 0.00 0.00 0.00 3.06
3301 3962 1.960689 TGATTCTCGACACACCAGACA 59.039 47.619 0.00 0.00 0.00 3.41
3302 3963 2.724977 TGATTCTCGACACACCAGAC 57.275 50.000 0.00 0.00 0.00 3.51
3303 3964 2.562738 ACATGATTCTCGACACACCAGA 59.437 45.455 0.00 0.00 0.00 3.86
3307 3968 2.068519 TGCACATGATTCTCGACACAC 58.931 47.619 0.00 0.00 0.00 3.82
3308 3969 2.453983 TGCACATGATTCTCGACACA 57.546 45.000 0.00 0.00 0.00 3.72
3309 3970 3.811722 TTTGCACATGATTCTCGACAC 57.188 42.857 0.00 0.00 0.00 3.67
3310 3971 4.320421 CCTTTTTGCACATGATTCTCGACA 60.320 41.667 0.00 0.00 0.00 4.35
3311 3972 4.161333 CCTTTTTGCACATGATTCTCGAC 58.839 43.478 0.00 0.00 0.00 4.20
3312 3973 3.191162 CCCTTTTTGCACATGATTCTCGA 59.809 43.478 0.00 0.00 0.00 4.04
3313 3974 3.504863 CCCTTTTTGCACATGATTCTCG 58.495 45.455 0.00 0.00 0.00 4.04
3314 3975 3.259123 ACCCCTTTTTGCACATGATTCTC 59.741 43.478 0.00 0.00 0.00 2.87
3315 3976 3.242011 ACCCCTTTTTGCACATGATTCT 58.758 40.909 0.00 0.00 0.00 2.40
3316 3977 3.683365 ACCCCTTTTTGCACATGATTC 57.317 42.857 0.00 0.00 0.00 2.52
3317 3978 3.515104 CCTACCCCTTTTTGCACATGATT 59.485 43.478 0.00 0.00 0.00 2.57
3318 3979 3.099141 CCTACCCCTTTTTGCACATGAT 58.901 45.455 0.00 0.00 0.00 2.45
3319 3980 2.109128 TCCTACCCCTTTTTGCACATGA 59.891 45.455 0.00 0.00 0.00 3.07
3320 3981 2.524306 TCCTACCCCTTTTTGCACATG 58.476 47.619 0.00 0.00 0.00 3.21
3321 3982 2.990740 TCCTACCCCTTTTTGCACAT 57.009 45.000 0.00 0.00 0.00 3.21
3322 3983 2.990740 ATCCTACCCCTTTTTGCACA 57.009 45.000 0.00 0.00 0.00 4.57
3323 3984 5.411669 CGATATATCCTACCCCTTTTTGCAC 59.588 44.000 7.15 0.00 0.00 4.57
3324 3985 5.514136 CCGATATATCCTACCCCTTTTTGCA 60.514 44.000 7.15 0.00 0.00 4.08
3325 3986 4.941873 CCGATATATCCTACCCCTTTTTGC 59.058 45.833 7.15 0.00 0.00 3.68
3326 3987 5.938125 CACCGATATATCCTACCCCTTTTTG 59.062 44.000 7.15 0.00 0.00 2.44
3327 3988 5.013808 CCACCGATATATCCTACCCCTTTTT 59.986 44.000 7.15 0.00 0.00 1.94
3328 3989 4.534897 CCACCGATATATCCTACCCCTTTT 59.465 45.833 7.15 0.00 0.00 2.27
3329 3990 4.101856 CCACCGATATATCCTACCCCTTT 58.898 47.826 7.15 0.00 0.00 3.11
3330 3991 3.338824 TCCACCGATATATCCTACCCCTT 59.661 47.826 7.15 0.00 0.00 3.95
3331 3992 2.931088 TCCACCGATATATCCTACCCCT 59.069 50.000 7.15 0.00 0.00 4.79
3332 3993 3.393426 TCCACCGATATATCCTACCCC 57.607 52.381 7.15 0.00 0.00 4.95
3333 3994 5.189145 ACAATTCCACCGATATATCCTACCC 59.811 44.000 7.15 0.00 0.00 3.69
3334 3995 6.295719 ACAATTCCACCGATATATCCTACC 57.704 41.667 7.15 0.00 0.00 3.18
3335 3996 6.594159 CCAACAATTCCACCGATATATCCTAC 59.406 42.308 7.15 0.00 0.00 3.18
3336 3997 6.499000 TCCAACAATTCCACCGATATATCCTA 59.501 38.462 7.15 0.00 0.00 2.94
3337 3998 5.309543 TCCAACAATTCCACCGATATATCCT 59.690 40.000 7.15 0.00 0.00 3.24
3338 3999 5.556915 TCCAACAATTCCACCGATATATCC 58.443 41.667 7.15 0.00 0.00 2.59
3339 4000 6.878923 TCATCCAACAATTCCACCGATATATC 59.121 38.462 2.34 2.34 0.00 1.63
3340 4001 6.778821 TCATCCAACAATTCCACCGATATAT 58.221 36.000 0.00 0.00 0.00 0.86
3341 4002 6.181206 TCATCCAACAATTCCACCGATATA 57.819 37.500 0.00 0.00 0.00 0.86
3342 4003 5.047566 TCATCCAACAATTCCACCGATAT 57.952 39.130 0.00 0.00 0.00 1.63
3343 4004 4.495690 TCATCCAACAATTCCACCGATA 57.504 40.909 0.00 0.00 0.00 2.92
3344 4005 3.364460 TCATCCAACAATTCCACCGAT 57.636 42.857 0.00 0.00 0.00 4.18
3345 4006 2.869101 TCATCCAACAATTCCACCGA 57.131 45.000 0.00 0.00 0.00 4.69
3346 4007 3.016031 TGATCATCCAACAATTCCACCG 58.984 45.455 0.00 0.00 0.00 4.94
3347 4008 3.181483 GCTGATCATCCAACAATTCCACC 60.181 47.826 0.00 0.00 0.00 4.61
3348 4009 3.444742 TGCTGATCATCCAACAATTCCAC 59.555 43.478 0.00 0.00 0.00 4.02
3349 4010 3.697542 CTGCTGATCATCCAACAATTCCA 59.302 43.478 0.00 0.00 0.00 3.53
3350 4011 3.698040 ACTGCTGATCATCCAACAATTCC 59.302 43.478 0.00 0.00 0.00 3.01
3351 4012 4.669318 CACTGCTGATCATCCAACAATTC 58.331 43.478 0.00 0.00 0.00 2.17
3352 4013 3.119245 GCACTGCTGATCATCCAACAATT 60.119 43.478 0.00 0.00 0.00 2.32
3353 4014 2.426024 GCACTGCTGATCATCCAACAAT 59.574 45.455 0.00 0.00 0.00 2.71
3354 4015 1.814394 GCACTGCTGATCATCCAACAA 59.186 47.619 0.00 0.00 0.00 2.83
3355 4016 1.271488 TGCACTGCTGATCATCCAACA 60.271 47.619 1.98 0.00 0.00 3.33
3356 4017 1.400846 CTGCACTGCTGATCATCCAAC 59.599 52.381 1.98 0.00 0.00 3.77
3357 4018 1.003928 ACTGCACTGCTGATCATCCAA 59.996 47.619 14.30 0.00 0.00 3.53
3358 4019 0.616891 ACTGCACTGCTGATCATCCA 59.383 50.000 14.30 0.00 0.00 3.41
3359 4020 1.015109 CACTGCACTGCTGATCATCC 58.985 55.000 14.30 0.00 0.00 3.51
3360 4021 1.735386 ACACTGCACTGCTGATCATC 58.265 50.000 14.30 0.00 0.00 2.92
3361 4022 2.195741 AACACTGCACTGCTGATCAT 57.804 45.000 14.30 0.00 0.00 2.45
3362 4023 2.837532 TAACACTGCACTGCTGATCA 57.162 45.000 14.30 0.00 0.00 2.92
3363 4024 5.801350 TTAATAACACTGCACTGCTGATC 57.199 39.130 14.30 0.00 0.00 2.92
3364 4025 6.037940 CAGATTAATAACACTGCACTGCTGAT 59.962 38.462 14.30 3.59 0.00 2.90
3365 4026 5.352293 CAGATTAATAACACTGCACTGCTGA 59.648 40.000 14.30 0.00 0.00 4.26
3366 4027 5.566623 CAGATTAATAACACTGCACTGCTG 58.433 41.667 6.37 6.37 0.00 4.41
3367 4028 5.808042 CAGATTAATAACACTGCACTGCT 57.192 39.130 1.98 0.00 0.00 4.24
3374 4035 8.124823 ACAAATCGATGCAGATTAATAACACTG 58.875 33.333 0.00 0.00 39.69 3.66
3375 4036 8.124823 CACAAATCGATGCAGATTAATAACACT 58.875 33.333 0.00 0.00 39.69 3.55
3376 4037 7.910162 ACACAAATCGATGCAGATTAATAACAC 59.090 33.333 0.00 0.00 39.69 3.32
3377 4038 7.984391 ACACAAATCGATGCAGATTAATAACA 58.016 30.769 0.00 0.00 39.69 2.41
3378 4039 8.841444 AACACAAATCGATGCAGATTAATAAC 57.159 30.769 0.00 0.00 39.69 1.89
3381 4042 9.669353 GATAAACACAAATCGATGCAGATTAAT 57.331 29.630 0.00 0.00 39.69 1.40
3382 4043 8.672815 TGATAAACACAAATCGATGCAGATTAA 58.327 29.630 0.00 0.00 39.69 1.40
3383 4044 8.207521 TGATAAACACAAATCGATGCAGATTA 57.792 30.769 0.00 0.00 39.69 1.75
3384 4045 7.087409 TGATAAACACAAATCGATGCAGATT 57.913 32.000 0.00 0.00 42.13 2.40
3385 4046 6.682423 TGATAAACACAAATCGATGCAGAT 57.318 33.333 0.00 0.00 0.00 2.90
3386 4047 6.238456 GGATGATAAACACAAATCGATGCAGA 60.238 38.462 0.00 0.00 0.00 4.26
3387 4048 5.911280 GGATGATAAACACAAATCGATGCAG 59.089 40.000 0.00 0.00 0.00 4.41
3388 4049 5.356470 TGGATGATAAACACAAATCGATGCA 59.644 36.000 0.00 0.00 0.00 3.96
3389 4050 5.682862 GTGGATGATAAACACAAATCGATGC 59.317 40.000 0.00 0.00 35.30 3.91
3390 4051 5.903530 CGTGGATGATAAACACAAATCGATG 59.096 40.000 0.00 0.00 34.91 3.84
3391 4052 5.584649 ACGTGGATGATAAACACAAATCGAT 59.415 36.000 0.00 0.00 34.91 3.59
3392 4053 4.932799 ACGTGGATGATAAACACAAATCGA 59.067 37.500 0.00 0.00 34.91 3.59
3393 4054 5.021389 CACGTGGATGATAAACACAAATCG 58.979 41.667 7.95 0.00 34.91 3.34
3394 4055 6.176975 TCACGTGGATGATAAACACAAATC 57.823 37.500 17.00 0.00 34.91 2.17
3395 4056 6.567687 TTCACGTGGATGATAAACACAAAT 57.432 33.333 17.00 0.00 34.91 2.32
3396 4057 6.567687 ATTCACGTGGATGATAAACACAAA 57.432 33.333 17.00 0.00 34.91 2.83
3397 4058 6.205658 TCAATTCACGTGGATGATAAACACAA 59.794 34.615 17.00 0.00 34.91 3.33
3398 4059 5.703130 TCAATTCACGTGGATGATAAACACA 59.297 36.000 17.00 0.00 34.91 3.72
3399 4060 6.176975 TCAATTCACGTGGATGATAAACAC 57.823 37.500 17.00 0.00 0.00 3.32
3400 4061 8.558700 CATATCAATTCACGTGGATGATAAACA 58.441 33.333 26.97 16.02 36.78 2.83
3401 4062 8.773645 TCATATCAATTCACGTGGATGATAAAC 58.226 33.333 26.97 0.00 36.78 2.01
3402 4063 8.900983 TCATATCAATTCACGTGGATGATAAA 57.099 30.769 26.97 20.11 36.78 1.40
3405 4066 9.676861 AATATCATATCAATTCACGTGGATGAT 57.323 29.630 24.48 24.48 35.48 2.45
3406 4067 8.938906 CAATATCATATCAATTCACGTGGATGA 58.061 33.333 17.00 17.02 0.00 2.92
3407 4068 8.938906 TCAATATCATATCAATTCACGTGGATG 58.061 33.333 17.00 12.25 0.00 3.51
3408 4069 9.506018 TTCAATATCATATCAATTCACGTGGAT 57.494 29.630 17.00 10.25 0.00 3.41
3409 4070 8.900983 TTCAATATCATATCAATTCACGTGGA 57.099 30.769 17.00 7.58 0.00 4.02
3410 4071 8.992073 TCTTCAATATCATATCAATTCACGTGG 58.008 33.333 17.00 0.00 0.00 4.94
3449 4110 8.823818 GCTGTGGTGTAAAGAAATATAATACGT 58.176 33.333 0.00 0.00 0.00 3.57
3450 4111 9.042008 AGCTGTGGTGTAAAGAAATATAATACG 57.958 33.333 0.00 0.00 0.00 3.06
3453 4114 9.113838 CAGAGCTGTGGTGTAAAGAAATATAAT 57.886 33.333 2.14 0.00 0.00 1.28
3454 4115 8.318412 TCAGAGCTGTGGTGTAAAGAAATATAA 58.682 33.333 11.47 0.00 0.00 0.98
3455 4116 7.847096 TCAGAGCTGTGGTGTAAAGAAATATA 58.153 34.615 11.47 0.00 0.00 0.86
3456 4117 6.711277 TCAGAGCTGTGGTGTAAAGAAATAT 58.289 36.000 11.47 0.00 0.00 1.28
3457 4118 6.109156 TCAGAGCTGTGGTGTAAAGAAATA 57.891 37.500 11.47 0.00 0.00 1.40
3458 4119 4.973168 TCAGAGCTGTGGTGTAAAGAAAT 58.027 39.130 11.47 0.00 0.00 2.17
3459 4120 4.380531 CTCAGAGCTGTGGTGTAAAGAAA 58.619 43.478 11.47 0.00 0.00 2.52
3460 4121 3.803715 GCTCAGAGCTGTGGTGTAAAGAA 60.804 47.826 15.78 0.00 38.45 2.52
3461 4122 2.289072 GCTCAGAGCTGTGGTGTAAAGA 60.289 50.000 15.78 0.00 38.45 2.52
3462 4123 2.072298 GCTCAGAGCTGTGGTGTAAAG 58.928 52.381 15.78 0.75 38.45 1.85
3463 4124 2.169832 GCTCAGAGCTGTGGTGTAAA 57.830 50.000 15.78 0.00 38.45 2.01
3464 4125 3.914984 GCTCAGAGCTGTGGTGTAA 57.085 52.632 15.78 0.00 38.45 2.41
3474 4135 1.374560 TCGTCTACAGAGCTCAGAGC 58.625 55.000 17.77 15.25 42.84 4.09
3475 4136 2.942376 ACATCGTCTACAGAGCTCAGAG 59.058 50.000 17.77 9.73 0.00 3.35
3476 4137 2.992593 ACATCGTCTACAGAGCTCAGA 58.007 47.619 17.77 7.36 0.00 3.27
3477 4138 3.249799 CCTACATCGTCTACAGAGCTCAG 59.750 52.174 17.77 11.05 0.00 3.35
3478 4139 3.118371 TCCTACATCGTCTACAGAGCTCA 60.118 47.826 17.77 0.00 0.00 4.26
3479 4140 3.468770 TCCTACATCGTCTACAGAGCTC 58.531 50.000 5.27 5.27 0.00 4.09
3480 4141 3.562343 TCCTACATCGTCTACAGAGCT 57.438 47.619 0.00 0.00 0.00 4.09
3481 4142 4.517453 AGATTCCTACATCGTCTACAGAGC 59.483 45.833 0.00 0.00 0.00 4.09
3482 4143 7.156000 TCTAGATTCCTACATCGTCTACAGAG 58.844 42.308 0.00 0.00 0.00 3.35
3483 4144 7.063934 TCTAGATTCCTACATCGTCTACAGA 57.936 40.000 0.00 0.00 0.00 3.41
3484 4145 7.731882 TTCTAGATTCCTACATCGTCTACAG 57.268 40.000 0.00 0.00 0.00 2.74
3485 4146 8.404000 GTTTTCTAGATTCCTACATCGTCTACA 58.596 37.037 0.00 0.00 0.00 2.74
3486 4147 8.623030 AGTTTTCTAGATTCCTACATCGTCTAC 58.377 37.037 0.00 0.00 0.00 2.59
3487 4148 8.622157 CAGTTTTCTAGATTCCTACATCGTCTA 58.378 37.037 0.00 0.00 0.00 2.59
3488 4149 7.122948 ACAGTTTTCTAGATTCCTACATCGTCT 59.877 37.037 0.00 0.00 0.00 4.18
3489 4150 7.259161 ACAGTTTTCTAGATTCCTACATCGTC 58.741 38.462 0.00 0.00 0.00 4.20
3490 4151 7.171630 ACAGTTTTCTAGATTCCTACATCGT 57.828 36.000 0.00 0.00 0.00 3.73
3491 4152 9.400638 GATACAGTTTTCTAGATTCCTACATCG 57.599 37.037 0.00 0.00 0.00 3.84
3495 4156 9.400638 CGATGATACAGTTTTCTAGATTCCTAC 57.599 37.037 0.00 0.00 0.00 3.18
3496 4157 9.350951 TCGATGATACAGTTTTCTAGATTCCTA 57.649 33.333 0.00 0.00 0.00 2.94
3497 4158 8.239038 TCGATGATACAGTTTTCTAGATTCCT 57.761 34.615 0.00 0.00 0.00 3.36
3498 4159 9.134734 GATCGATGATACAGTTTTCTAGATTCC 57.865 37.037 0.54 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.