Multiple sequence alignment - TraesCS4A01G451000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G451000 chr4A 100.000 1877 0 0 754 2630 716703008 716704884 0.000000e+00 3467.0
1 TraesCS4A01G451000 chr4A 96.358 1016 37 0 754 1769 716630522 716631537 0.000000e+00 1672.0
2 TraesCS4A01G451000 chr4A 100.000 423 0 0 1 423 716702255 716702677 0.000000e+00 782.0
3 TraesCS4A01G451000 chr4A 94.492 236 12 1 175 410 716630272 716630506 1.920000e-96 363.0
4 TraesCS4A01G451000 chr4A 73.602 769 169 26 898 1649 715954937 715955688 5.580000e-67 265.0
5 TraesCS4A01G451000 chr4A 80.000 90 18 0 1528 1617 716293113 716293024 1.690000e-07 67.6
6 TraesCS4A01G451000 chr7A 97.427 583 12 2 2049 2630 683645722 683646302 0.000000e+00 990.0
7 TraesCS4A01G451000 chr3B 97.265 585 13 2 2049 2630 817080856 817081440 0.000000e+00 989.0
8 TraesCS4A01G451000 chr3B 80.226 177 31 4 1776 1950 63664113 63664287 2.120000e-26 130.0
9 TraesCS4A01G451000 chr1B 97.069 580 14 2 2052 2630 429009957 429009380 0.000000e+00 974.0
10 TraesCS4A01G451000 chr1B 82.803 157 25 2 1780 1935 358289568 358289723 3.530000e-29 139.0
11 TraesCS4A01G451000 chr1B 80.124 161 29 3 1775 1935 18963102 18963259 1.650000e-22 117.0
12 TraesCS4A01G451000 chr1B 81.250 112 16 5 1775 1883 318976573 318976682 4.660000e-13 86.1
13 TraesCS4A01G451000 chr1A 96.581 585 17 2 2049 2630 577890674 577890090 0.000000e+00 966.0
14 TraesCS4A01G451000 chr5B 96.730 581 14 2 2051 2630 442372259 442371683 0.000000e+00 963.0
15 TraesCS4A01G451000 chr2A 96.569 583 15 2 2049 2630 775432702 775432124 0.000000e+00 961.0
16 TraesCS4A01G451000 chr7B 96.410 585 16 3 2049 2630 708017009 708017591 0.000000e+00 959.0
17 TraesCS4A01G451000 chr7B 90.036 281 18 2 1775 2046 149277240 149277519 3.220000e-94 355.0
18 TraesCS4A01G451000 chr7B 82.787 122 20 1 1775 1895 8319631 8319752 9.950000e-20 108.0
19 TraesCS4A01G451000 chr7B 82.645 121 20 1 1775 1895 8159363 8159482 3.580000e-19 106.0
20 TraesCS4A01G451000 chr4B 96.398 583 16 2 2049 2630 652883700 652884278 0.000000e+00 955.0
21 TraesCS4A01G451000 chr4B 89.540 239 14 3 1790 2019 529205593 529205829 2.560000e-75 292.0
22 TraesCS4A01G451000 chr6A 96.226 583 17 2 2049 2630 101900140 101899562 0.000000e+00 950.0
23 TraesCS4A01G451000 chr2D 83.750 80 8 5 1768 1843 410953094 410953016 1.310000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G451000 chr4A 716702255 716704884 2629 False 2124.5 3467 100.000 1 2630 2 chr4A.!!$F3 2629
1 TraesCS4A01G451000 chr4A 716630272 716631537 1265 False 1017.5 1672 95.425 175 1769 2 chr4A.!!$F2 1594
2 TraesCS4A01G451000 chr4A 715954937 715955688 751 False 265.0 265 73.602 898 1649 1 chr4A.!!$F1 751
3 TraesCS4A01G451000 chr7A 683645722 683646302 580 False 990.0 990 97.427 2049 2630 1 chr7A.!!$F1 581
4 TraesCS4A01G451000 chr3B 817080856 817081440 584 False 989.0 989 97.265 2049 2630 1 chr3B.!!$F2 581
5 TraesCS4A01G451000 chr1B 429009380 429009957 577 True 974.0 974 97.069 2052 2630 1 chr1B.!!$R1 578
6 TraesCS4A01G451000 chr1A 577890090 577890674 584 True 966.0 966 96.581 2049 2630 1 chr1A.!!$R1 581
7 TraesCS4A01G451000 chr5B 442371683 442372259 576 True 963.0 963 96.730 2051 2630 1 chr5B.!!$R1 579
8 TraesCS4A01G451000 chr2A 775432124 775432702 578 True 961.0 961 96.569 2049 2630 1 chr2A.!!$R1 581
9 TraesCS4A01G451000 chr7B 708017009 708017591 582 False 959.0 959 96.410 2049 2630 1 chr7B.!!$F4 581
10 TraesCS4A01G451000 chr4B 652883700 652884278 578 False 955.0 955 96.398 2049 2630 1 chr4B.!!$F2 581
11 TraesCS4A01G451000 chr6A 101899562 101900140 578 True 950.0 950 96.226 2049 2630 1 chr6A.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 1.270305 CCACGAGAACAAGAAGAGGCA 60.27 52.381 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 1743 0.806868 ATGGCGCAGTGATGTCAAAG 59.193 50.0 10.83 0.0 0.0 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.838339 AGAATCAACTTATTTGTGACTATAGGG 57.162 33.333 4.43 0.00 36.49 3.53
34 35 8.980481 AATCAACTTATTTGTGACTATAGGGG 57.020 34.615 4.43 0.00 36.49 4.79
35 36 7.504926 TCAACTTATTTGTGACTATAGGGGT 57.495 36.000 4.43 0.00 36.49 4.95
36 37 8.612486 TCAACTTATTTGTGACTATAGGGGTA 57.388 34.615 4.43 0.00 36.49 3.69
37 38 8.480501 TCAACTTATTTGTGACTATAGGGGTAC 58.519 37.037 4.43 0.00 36.49 3.34
38 39 8.483758 CAACTTATTTGTGACTATAGGGGTACT 58.516 37.037 4.43 0.00 0.00 2.73
39 40 9.719433 AACTTATTTGTGACTATAGGGGTACTA 57.281 33.333 4.43 0.00 35.80 1.82
40 41 9.719433 ACTTATTTGTGACTATAGGGGTACTAA 57.281 33.333 4.43 1.90 34.79 2.24
58 59 7.737525 GTACTAATACCACGAGAACAAGAAG 57.262 40.000 0.00 0.00 0.00 2.85
59 60 6.585695 ACTAATACCACGAGAACAAGAAGA 57.414 37.500 0.00 0.00 0.00 2.87
60 61 6.622549 ACTAATACCACGAGAACAAGAAGAG 58.377 40.000 0.00 0.00 0.00 2.85
61 62 2.821991 ACCACGAGAACAAGAAGAGG 57.178 50.000 0.00 0.00 0.00 3.69
62 63 1.270358 ACCACGAGAACAAGAAGAGGC 60.270 52.381 0.00 0.00 0.00 4.70
63 64 1.270305 CCACGAGAACAAGAAGAGGCA 60.270 52.381 0.00 0.00 0.00 4.75
64 65 2.613977 CCACGAGAACAAGAAGAGGCAT 60.614 50.000 0.00 0.00 0.00 4.40
65 66 3.070018 CACGAGAACAAGAAGAGGCATT 58.930 45.455 0.00 0.00 0.00 3.56
66 67 4.245660 CACGAGAACAAGAAGAGGCATTA 58.754 43.478 0.00 0.00 0.00 1.90
67 68 4.690748 CACGAGAACAAGAAGAGGCATTAA 59.309 41.667 0.00 0.00 0.00 1.40
68 69 5.352569 CACGAGAACAAGAAGAGGCATTAAT 59.647 40.000 0.00 0.00 0.00 1.40
69 70 6.535150 CACGAGAACAAGAAGAGGCATTAATA 59.465 38.462 0.00 0.00 0.00 0.98
70 71 6.535508 ACGAGAACAAGAAGAGGCATTAATAC 59.464 38.462 0.00 0.00 0.00 1.89
71 72 6.018669 CGAGAACAAGAAGAGGCATTAATACC 60.019 42.308 0.00 0.00 0.00 2.73
72 73 5.817816 AGAACAAGAAGAGGCATTAATACCG 59.182 40.000 0.00 0.00 0.00 4.02
73 74 5.353394 ACAAGAAGAGGCATTAATACCGA 57.647 39.130 0.00 0.00 0.00 4.69
74 75 5.741011 ACAAGAAGAGGCATTAATACCGAA 58.259 37.500 0.00 0.00 0.00 4.30
75 76 5.817816 ACAAGAAGAGGCATTAATACCGAAG 59.182 40.000 0.00 0.00 0.00 3.79
76 77 5.871396 AGAAGAGGCATTAATACCGAAGA 57.129 39.130 0.00 0.00 0.00 2.87
77 78 6.426646 AGAAGAGGCATTAATACCGAAGAT 57.573 37.500 0.00 0.00 0.00 2.40
78 79 6.459923 AGAAGAGGCATTAATACCGAAGATC 58.540 40.000 0.00 0.00 0.00 2.75
79 80 5.153950 AGAGGCATTAATACCGAAGATCC 57.846 43.478 0.00 0.00 0.00 3.36
80 81 4.593206 AGAGGCATTAATACCGAAGATCCA 59.407 41.667 0.00 0.00 0.00 3.41
81 82 5.071788 AGAGGCATTAATACCGAAGATCCAA 59.928 40.000 0.00 0.00 0.00 3.53
82 83 5.690865 AGGCATTAATACCGAAGATCCAAA 58.309 37.500 0.00 0.00 0.00 3.28
83 84 5.765182 AGGCATTAATACCGAAGATCCAAAG 59.235 40.000 0.00 0.00 0.00 2.77
84 85 5.531287 GGCATTAATACCGAAGATCCAAAGT 59.469 40.000 0.00 0.00 0.00 2.66
85 86 6.430451 GCATTAATACCGAAGATCCAAAGTG 58.570 40.000 0.00 0.00 0.00 3.16
86 87 6.260050 GCATTAATACCGAAGATCCAAAGTGA 59.740 38.462 0.00 0.00 0.00 3.41
87 88 7.519008 GCATTAATACCGAAGATCCAAAGTGAG 60.519 40.741 0.00 0.00 0.00 3.51
88 89 2.100605 ACCGAAGATCCAAAGTGAGC 57.899 50.000 0.00 0.00 0.00 4.26
89 90 1.347707 ACCGAAGATCCAAAGTGAGCA 59.652 47.619 0.00 0.00 0.00 4.26
90 91 1.734465 CCGAAGATCCAAAGTGAGCAC 59.266 52.381 0.00 0.00 0.00 4.40
91 92 2.613977 CCGAAGATCCAAAGTGAGCACT 60.614 50.000 0.00 0.00 44.94 4.40
92 93 3.368427 CCGAAGATCCAAAGTGAGCACTA 60.368 47.826 3.21 0.00 41.58 2.74
93 94 4.245660 CGAAGATCCAAAGTGAGCACTAA 58.754 43.478 3.21 0.00 41.58 2.24
94 95 4.872691 CGAAGATCCAAAGTGAGCACTAAT 59.127 41.667 3.21 0.00 41.58 1.73
95 96 6.042777 CGAAGATCCAAAGTGAGCACTAATA 58.957 40.000 3.21 0.00 41.58 0.98
96 97 6.019479 CGAAGATCCAAAGTGAGCACTAATAC 60.019 42.308 3.21 0.00 41.58 1.89
97 98 5.675538 AGATCCAAAGTGAGCACTAATACC 58.324 41.667 3.21 0.00 41.58 2.73
98 99 4.901197 TCCAAAGTGAGCACTAATACCA 57.099 40.909 3.21 0.00 41.58 3.25
99 100 4.575885 TCCAAAGTGAGCACTAATACCAC 58.424 43.478 3.21 0.00 41.58 4.16
100 101 4.041075 TCCAAAGTGAGCACTAATACCACA 59.959 41.667 3.21 0.00 41.58 4.17
101 102 4.759693 CCAAAGTGAGCACTAATACCACAA 59.240 41.667 3.21 0.00 41.58 3.33
102 103 5.106555 CCAAAGTGAGCACTAATACCACAAG 60.107 44.000 3.21 0.00 41.58 3.16
103 104 5.483685 AAGTGAGCACTAATACCACAAGA 57.516 39.130 3.21 0.00 41.58 3.02
104 105 5.683876 AGTGAGCACTAATACCACAAGAT 57.316 39.130 0.41 0.00 40.43 2.40
105 106 5.665459 AGTGAGCACTAATACCACAAGATC 58.335 41.667 0.41 0.00 40.43 2.75
106 107 4.811557 GTGAGCACTAATACCACAAGATCC 59.188 45.833 0.00 0.00 0.00 3.36
107 108 4.469586 TGAGCACTAATACCACAAGATCCA 59.530 41.667 0.00 0.00 0.00 3.41
108 109 5.045942 TGAGCACTAATACCACAAGATCCAA 60.046 40.000 0.00 0.00 0.00 3.53
109 110 5.815581 AGCACTAATACCACAAGATCCAAA 58.184 37.500 0.00 0.00 0.00 3.28
110 111 6.245408 AGCACTAATACCACAAGATCCAAAA 58.755 36.000 0.00 0.00 0.00 2.44
111 112 6.891908 AGCACTAATACCACAAGATCCAAAAT 59.108 34.615 0.00 0.00 0.00 1.82
112 113 6.974622 GCACTAATACCACAAGATCCAAAATG 59.025 38.462 0.00 0.00 0.00 2.32
113 114 7.148086 GCACTAATACCACAAGATCCAAAATGA 60.148 37.037 0.00 0.00 0.00 2.57
114 115 8.400947 CACTAATACCACAAGATCCAAAATGAG 58.599 37.037 0.00 0.00 0.00 2.90
115 116 5.841957 ATACCACAAGATCCAAAATGAGC 57.158 39.130 0.00 0.00 0.00 4.26
116 117 3.499338 ACCACAAGATCCAAAATGAGCA 58.501 40.909 0.00 0.00 0.00 4.26
117 118 3.256631 ACCACAAGATCCAAAATGAGCAC 59.743 43.478 0.00 0.00 0.00 4.40
118 119 3.508793 CCACAAGATCCAAAATGAGCACT 59.491 43.478 0.00 0.00 0.00 4.40
119 120 4.701651 CCACAAGATCCAAAATGAGCACTA 59.298 41.667 0.00 0.00 0.00 2.74
120 121 5.183713 CCACAAGATCCAAAATGAGCACTAA 59.816 40.000 0.00 0.00 0.00 2.24
121 122 6.127535 CCACAAGATCCAAAATGAGCACTAAT 60.128 38.462 0.00 0.00 0.00 1.73
122 123 7.067372 CCACAAGATCCAAAATGAGCACTAATA 59.933 37.037 0.00 0.00 0.00 0.98
123 124 7.912250 CACAAGATCCAAAATGAGCACTAATAC 59.088 37.037 0.00 0.00 0.00 1.89
124 125 7.831193 ACAAGATCCAAAATGAGCACTAATACT 59.169 33.333 0.00 0.00 0.00 2.12
125 126 8.341173 CAAGATCCAAAATGAGCACTAATACTC 58.659 37.037 0.00 0.00 0.00 2.59
126 127 7.568349 AGATCCAAAATGAGCACTAATACTCA 58.432 34.615 0.00 0.00 46.34 3.41
147 148 8.644374 ACTCATAGATTACTTACAGGAGATCC 57.356 38.462 0.00 0.00 0.00 3.36
148 149 8.228206 ACTCATAGATTACTTACAGGAGATCCA 58.772 37.037 0.92 0.00 38.89 3.41
149 150 9.083422 CTCATAGATTACTTACAGGAGATCCAA 57.917 37.037 0.92 0.00 38.89 3.53
150 151 9.434275 TCATAGATTACTTACAGGAGATCCAAA 57.566 33.333 0.92 0.00 38.89 3.28
153 154 7.918076 AGATTACTTACAGGAGATCCAAAACA 58.082 34.615 0.92 0.00 38.89 2.83
154 155 8.383175 AGATTACTTACAGGAGATCCAAAACAA 58.617 33.333 0.92 0.00 38.89 2.83
155 156 7.979444 TTACTTACAGGAGATCCAAAACAAG 57.021 36.000 0.92 0.44 38.89 3.16
156 157 4.762251 ACTTACAGGAGATCCAAAACAAGC 59.238 41.667 0.92 0.00 38.89 4.01
157 158 3.228188 ACAGGAGATCCAAAACAAGCA 57.772 42.857 0.92 0.00 38.89 3.91
158 159 2.887152 ACAGGAGATCCAAAACAAGCAC 59.113 45.455 0.92 0.00 38.89 4.40
159 160 2.886523 CAGGAGATCCAAAACAAGCACA 59.113 45.455 0.92 0.00 38.89 4.57
160 161 2.887152 AGGAGATCCAAAACAAGCACAC 59.113 45.455 0.92 0.00 38.89 3.82
161 162 2.029918 GGAGATCCAAAACAAGCACACC 60.030 50.000 0.00 0.00 35.64 4.16
162 163 2.622942 GAGATCCAAAACAAGCACACCA 59.377 45.455 0.00 0.00 0.00 4.17
163 164 2.362077 AGATCCAAAACAAGCACACCAC 59.638 45.455 0.00 0.00 0.00 4.16
164 165 1.550327 TCCAAAACAAGCACACCACA 58.450 45.000 0.00 0.00 0.00 4.17
165 166 2.106566 TCCAAAACAAGCACACCACAT 58.893 42.857 0.00 0.00 0.00 3.21
166 167 2.499289 TCCAAAACAAGCACACCACATT 59.501 40.909 0.00 0.00 0.00 2.71
167 168 3.055530 TCCAAAACAAGCACACCACATTT 60.056 39.130 0.00 0.00 0.00 2.32
168 169 4.160439 TCCAAAACAAGCACACCACATTTA 59.840 37.500 0.00 0.00 0.00 1.40
169 170 5.055812 CCAAAACAAGCACACCACATTTAT 58.944 37.500 0.00 0.00 0.00 1.40
170 171 5.050227 CCAAAACAAGCACACCACATTTATG 60.050 40.000 0.00 0.00 0.00 1.90
171 172 5.528043 AAACAAGCACACCACATTTATGA 57.472 34.783 0.00 0.00 0.00 2.15
172 173 5.528043 AACAAGCACACCACATTTATGAA 57.472 34.783 0.00 0.00 0.00 2.57
173 174 5.528043 ACAAGCACACCACATTTATGAAA 57.472 34.783 0.00 0.00 0.00 2.69
230 231 9.896263 AAAATGCATCAATTTTACCATCAAAAC 57.104 25.926 0.00 0.00 37.84 2.43
268 269 8.771521 AATCATTTTGATACCCATGATCAAGA 57.228 30.769 0.00 5.27 42.63 3.02
279 280 3.314357 CCATGATCAAGATGTTCGCATGT 59.686 43.478 0.00 0.00 38.08 3.21
307 308 9.785982 TGAACCAATGGACATTCGATATATAAA 57.214 29.630 6.16 0.00 0.00 1.40
418 419 3.898482 TCGAGAGAGAGAGAGAGAGAGA 58.102 50.000 0.00 0.00 34.84 3.10
419 420 3.885901 TCGAGAGAGAGAGAGAGAGAGAG 59.114 52.174 0.00 0.00 34.84 3.20
421 422 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
422 423 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
796 797 5.186996 ACATCGATTGGCCATGAATAAAC 57.813 39.130 6.09 0.00 0.00 2.01
800 801 5.406649 TCGATTGGCCATGAATAAACAAAC 58.593 37.500 6.09 0.00 0.00 2.93
801 802 4.265085 CGATTGGCCATGAATAAACAAACG 59.735 41.667 6.09 0.00 0.00 3.60
861 862 6.515272 ACTGCATTTATGAAAACCCACTAG 57.485 37.500 0.00 0.00 0.00 2.57
869 870 8.815565 TTTATGAAAACCCACTAGATGCATTA 57.184 30.769 0.00 0.00 0.00 1.90
1092 1093 2.101582 CGCTAAGGCCAATGTCTCTAGT 59.898 50.000 5.01 0.00 34.44 2.57
1175 1176 1.065928 GTGATGGCGACCTCCGTAG 59.934 63.158 0.00 0.00 41.15 3.51
1212 1213 0.861837 GCTTATCGACCCTGCAATCG 59.138 55.000 8.07 8.07 39.72 3.34
1301 1302 0.038251 CGCCTCACTACTGCAACTCA 60.038 55.000 0.00 0.00 0.00 3.41
1324 1325 6.017933 CACAATGTCGAGAAAATGCTAGAAC 58.982 40.000 0.00 0.00 0.00 3.01
1369 1370 0.739813 ACGCGACCTCAGTTTATGCC 60.740 55.000 15.93 0.00 0.00 4.40
1565 1575 5.067674 CGGATGCCCTGATAAAAGAAAATGA 59.932 40.000 0.00 0.00 0.00 2.57
1733 1743 8.617809 TGTTGTCACCTTTGTTTTATTCTCTAC 58.382 33.333 0.00 0.00 0.00 2.59
1753 1763 0.804364 TTTGACATCACTGCGCCATC 59.196 50.000 4.18 0.00 0.00 3.51
1769 1779 3.537580 GCCATCTGTTTATGTCCCGTAA 58.462 45.455 0.00 0.00 0.00 3.18
1770 1780 3.942748 GCCATCTGTTTATGTCCCGTAAA 59.057 43.478 0.00 0.00 0.00 2.01
1771 1781 4.578928 GCCATCTGTTTATGTCCCGTAAAT 59.421 41.667 0.00 0.00 29.37 1.40
1772 1782 5.277828 GCCATCTGTTTATGTCCCGTAAATC 60.278 44.000 0.00 0.00 29.37 2.17
1773 1783 6.055588 CCATCTGTTTATGTCCCGTAAATCT 58.944 40.000 0.00 0.00 29.37 2.40
1774 1784 6.542370 CCATCTGTTTATGTCCCGTAAATCTT 59.458 38.462 0.00 0.00 29.37 2.40
1775 1785 7.254795 CCATCTGTTTATGTCCCGTAAATCTTC 60.255 40.741 0.00 0.00 29.37 2.87
1776 1786 6.942976 TCTGTTTATGTCCCGTAAATCTTCT 58.057 36.000 0.00 0.00 29.37 2.85
1777 1787 8.070034 TCTGTTTATGTCCCGTAAATCTTCTA 57.930 34.615 0.00 0.00 29.37 2.10
1778 1788 8.701895 TCTGTTTATGTCCCGTAAATCTTCTAT 58.298 33.333 0.00 0.00 29.37 1.98
1779 1789 8.882415 TGTTTATGTCCCGTAAATCTTCTATC 57.118 34.615 0.00 0.00 29.37 2.08
1780 1790 8.701895 TGTTTATGTCCCGTAAATCTTCTATCT 58.298 33.333 0.00 0.00 29.37 1.98
1786 1796 9.358406 TGTCCCGTAAATCTTCTATCTATTACA 57.642 33.333 0.00 0.00 0.00 2.41
1814 1824 9.914131 AATTAAAACAAGAGAGAAATAAGCCAC 57.086 29.630 0.00 0.00 0.00 5.01
1815 1825 8.691661 TTAAAACAAGAGAGAAATAAGCCACT 57.308 30.769 0.00 0.00 0.00 4.00
1816 1826 9.787435 TTAAAACAAGAGAGAAATAAGCCACTA 57.213 29.630 0.00 0.00 0.00 2.74
1817 1827 7.674471 AAACAAGAGAGAAATAAGCCACTAC 57.326 36.000 0.00 0.00 0.00 2.73
1818 1828 5.411781 ACAAGAGAGAAATAAGCCACTACG 58.588 41.667 0.00 0.00 0.00 3.51
1819 1829 5.047235 ACAAGAGAGAAATAAGCCACTACGT 60.047 40.000 0.00 0.00 0.00 3.57
1820 1830 5.662674 AGAGAGAAATAAGCCACTACGTT 57.337 39.130 0.00 0.00 0.00 3.99
1821 1831 5.652518 AGAGAGAAATAAGCCACTACGTTC 58.347 41.667 0.00 0.00 0.00 3.95
1822 1832 5.185249 AGAGAGAAATAAGCCACTACGTTCA 59.815 40.000 0.00 0.00 0.00 3.18
1823 1833 5.978814 AGAGAAATAAGCCACTACGTTCAT 58.021 37.500 0.00 0.00 0.00 2.57
1824 1834 6.043411 AGAGAAATAAGCCACTACGTTCATC 58.957 40.000 0.00 0.00 0.00 2.92
1825 1835 5.116882 AGAAATAAGCCACTACGTTCATCC 58.883 41.667 0.00 0.00 0.00 3.51
1826 1836 4.481368 AATAAGCCACTACGTTCATCCA 57.519 40.909 0.00 0.00 0.00 3.41
1827 1837 2.094762 AAGCCACTACGTTCATCCAC 57.905 50.000 0.00 0.00 0.00 4.02
1828 1838 0.973632 AGCCACTACGTTCATCCACA 59.026 50.000 0.00 0.00 0.00 4.17
1829 1839 1.555075 AGCCACTACGTTCATCCACAT 59.445 47.619 0.00 0.00 0.00 3.21
1830 1840 2.764010 AGCCACTACGTTCATCCACATA 59.236 45.455 0.00 0.00 0.00 2.29
1831 1841 3.123804 GCCACTACGTTCATCCACATAG 58.876 50.000 0.00 0.00 0.00 2.23
1832 1842 3.717707 CCACTACGTTCATCCACATAGG 58.282 50.000 0.00 0.00 39.47 2.57
1833 1843 3.132289 CCACTACGTTCATCCACATAGGT 59.868 47.826 0.00 0.00 39.02 3.08
1834 1844 4.382685 CCACTACGTTCATCCACATAGGTT 60.383 45.833 0.00 0.00 39.02 3.50
1835 1845 5.163488 CCACTACGTTCATCCACATAGGTTA 60.163 44.000 0.00 0.00 39.02 2.85
1836 1846 6.334989 CACTACGTTCATCCACATAGGTTAA 58.665 40.000 0.00 0.00 39.02 2.01
1837 1847 6.814644 CACTACGTTCATCCACATAGGTTAAA 59.185 38.462 0.00 0.00 39.02 1.52
1838 1848 7.494625 CACTACGTTCATCCACATAGGTTAAAT 59.505 37.037 0.00 0.00 39.02 1.40
1839 1849 8.044908 ACTACGTTCATCCACATAGGTTAAATT 58.955 33.333 0.00 0.00 39.02 1.82
1840 1850 9.537192 CTACGTTCATCCACATAGGTTAAATTA 57.463 33.333 0.00 0.00 39.02 1.40
1841 1851 8.974060 ACGTTCATCCACATAGGTTAAATTAT 57.026 30.769 0.00 0.00 39.02 1.28
1842 1852 9.403583 ACGTTCATCCACATAGGTTAAATTATT 57.596 29.630 0.00 0.00 39.02 1.40
1886 1896 9.760077 ATATAAACGGACGAGATTTAAAGATGT 57.240 29.630 0.00 0.00 0.00 3.06
1888 1898 7.894376 AAACGGACGAGATTTAAAGATGTAA 57.106 32.000 0.00 0.00 0.00 2.41
1889 1899 6.882458 ACGGACGAGATTTAAAGATGTAAC 57.118 37.500 0.00 0.00 0.00 2.50
1890 1900 5.514204 ACGGACGAGATTTAAAGATGTAACG 59.486 40.000 0.00 0.00 0.00 3.18
1891 1901 5.514204 CGGACGAGATTTAAAGATGTAACGT 59.486 40.000 0.00 0.00 0.00 3.99
1892 1902 6.034256 CGGACGAGATTTAAAGATGTAACGTT 59.966 38.462 5.88 5.88 0.00 3.99
1893 1903 7.218773 CGGACGAGATTTAAAGATGTAACGTTA 59.781 37.037 3.29 3.29 0.00 3.18
1894 1904 8.316753 GGACGAGATTTAAAGATGTAACGTTAC 58.683 37.037 27.65 27.65 0.00 2.50
1895 1905 8.746922 ACGAGATTTAAAGATGTAACGTTACA 57.253 30.769 35.74 35.74 46.55 2.41
1932 1942 3.815856 ATGCATTGTTTTGGACACACA 57.184 38.095 0.00 0.00 38.18 3.72
1933 1943 3.599730 TGCATTGTTTTGGACACACAA 57.400 38.095 0.00 0.00 38.18 3.33
1934 1944 3.930336 TGCATTGTTTTGGACACACAAA 58.070 36.364 0.00 0.00 38.18 2.83
1935 1945 3.931468 TGCATTGTTTTGGACACACAAAG 59.069 39.130 0.00 0.00 40.97 2.77
1936 1946 3.932089 GCATTGTTTTGGACACACAAAGT 59.068 39.130 1.60 0.00 40.97 2.66
1937 1947 4.032786 GCATTGTTTTGGACACACAAAGTC 59.967 41.667 1.60 0.00 40.97 3.01
1938 1948 5.410067 CATTGTTTTGGACACACAAAGTCT 58.590 37.500 0.00 0.00 40.97 3.24
1939 1949 4.433186 TGTTTTGGACACACAAAGTCTG 57.567 40.909 0.00 0.00 40.97 3.51
1940 1950 3.823873 TGTTTTGGACACACAAAGTCTGT 59.176 39.130 0.00 0.00 40.97 3.41
1941 1951 4.083003 TGTTTTGGACACACAAAGTCTGTC 60.083 41.667 0.00 0.00 40.97 3.51
1942 1952 3.342377 TTGGACACACAAAGTCTGTCA 57.658 42.857 7.63 0.00 34.09 3.58
1943 1953 3.558931 TGGACACACAAAGTCTGTCAT 57.441 42.857 7.63 0.00 34.09 3.06
1944 1954 3.205338 TGGACACACAAAGTCTGTCATG 58.795 45.455 7.63 0.00 34.09 3.07
1945 1955 3.206150 GGACACACAAAGTCTGTCATGT 58.794 45.455 7.63 0.00 34.09 3.21
1946 1956 4.141824 TGGACACACAAAGTCTGTCATGTA 60.142 41.667 7.63 0.00 34.09 2.29
1947 1957 4.211374 GGACACACAAAGTCTGTCATGTAC 59.789 45.833 7.63 0.00 34.09 2.90
1948 1958 4.765273 ACACACAAAGTCTGTCATGTACA 58.235 39.130 0.00 0.00 35.47 2.90
1949 1959 5.368145 ACACACAAAGTCTGTCATGTACAT 58.632 37.500 1.41 1.41 37.50 2.29
1950 1960 6.521162 ACACACAAAGTCTGTCATGTACATA 58.479 36.000 8.32 0.00 37.50 2.29
1951 1961 7.161404 ACACACAAAGTCTGTCATGTACATAT 58.839 34.615 8.32 0.00 37.50 1.78
1952 1962 8.311109 ACACACAAAGTCTGTCATGTACATATA 58.689 33.333 8.32 0.00 37.50 0.86
1953 1963 9.317936 CACACAAAGTCTGTCATGTACATATAT 57.682 33.333 8.32 0.00 37.50 0.86
1954 1964 9.534565 ACACAAAGTCTGTCATGTACATATATC 57.465 33.333 8.32 0.43 37.50 1.63
1955 1965 9.755804 CACAAAGTCTGTCATGTACATATATCT 57.244 33.333 8.32 0.41 37.50 1.98
1960 1970 8.303156 AGTCTGTCATGTACATATATCTTCAGC 58.697 37.037 8.32 6.33 37.50 4.26
1961 1971 7.543868 GTCTGTCATGTACATATATCTTCAGCC 59.456 40.741 8.32 0.00 37.50 4.85
1962 1972 7.233348 TCTGTCATGTACATATATCTTCAGCCA 59.767 37.037 8.32 0.00 37.50 4.75
1963 1973 7.154656 TGTCATGTACATATATCTTCAGCCAC 58.845 38.462 8.32 0.00 31.43 5.01
1964 1974 6.591834 GTCATGTACATATATCTTCAGCCACC 59.408 42.308 8.32 0.00 0.00 4.61
1965 1975 6.498303 TCATGTACATATATCTTCAGCCACCT 59.502 38.462 8.32 0.00 0.00 4.00
1966 1976 7.673926 TCATGTACATATATCTTCAGCCACCTA 59.326 37.037 8.32 0.00 0.00 3.08
1967 1977 8.481314 CATGTACATATATCTTCAGCCACCTAT 58.519 37.037 8.32 0.00 0.00 2.57
1968 1978 8.067751 TGTACATATATCTTCAGCCACCTATC 57.932 38.462 0.00 0.00 0.00 2.08
1969 1979 6.214191 ACATATATCTTCAGCCACCTATCG 57.786 41.667 0.00 0.00 0.00 2.92
1970 1980 5.717178 ACATATATCTTCAGCCACCTATCGT 59.283 40.000 0.00 0.00 0.00 3.73
1971 1981 6.890268 ACATATATCTTCAGCCACCTATCGTA 59.110 38.462 0.00 0.00 0.00 3.43
1972 1982 7.561722 ACATATATCTTCAGCCACCTATCGTAT 59.438 37.037 0.00 0.00 0.00 3.06
1973 1983 9.067986 CATATATCTTCAGCCACCTATCGTATA 57.932 37.037 0.00 0.00 0.00 1.47
1974 1984 9.815306 ATATATCTTCAGCCACCTATCGTATAT 57.185 33.333 0.00 0.00 0.00 0.86
1975 1985 5.899120 TCTTCAGCCACCTATCGTATATC 57.101 43.478 0.00 0.00 0.00 1.63
1976 1986 5.571285 TCTTCAGCCACCTATCGTATATCT 58.429 41.667 0.00 0.00 0.00 1.98
1977 1987 6.718294 TCTTCAGCCACCTATCGTATATCTA 58.282 40.000 0.00 0.00 0.00 1.98
1978 1988 7.347252 TCTTCAGCCACCTATCGTATATCTAT 58.653 38.462 0.00 0.00 0.00 1.98
1979 1989 6.944234 TCAGCCACCTATCGTATATCTATG 57.056 41.667 0.00 0.00 0.00 2.23
1980 1990 6.659824 TCAGCCACCTATCGTATATCTATGA 58.340 40.000 0.00 0.00 0.00 2.15
1981 1991 7.290813 TCAGCCACCTATCGTATATCTATGAT 58.709 38.462 0.00 0.00 37.37 2.45
1982 1992 7.229506 TCAGCCACCTATCGTATATCTATGATG 59.770 40.741 3.66 0.00 34.99 3.07
1983 1993 6.491745 AGCCACCTATCGTATATCTATGATGG 59.508 42.308 3.66 1.11 34.99 3.51
1984 1994 6.490381 GCCACCTATCGTATATCTATGATGGA 59.510 42.308 5.55 0.00 35.11 3.41
1985 1995 7.014326 GCCACCTATCGTATATCTATGATGGAA 59.986 40.741 5.55 0.00 35.11 3.53
1986 1996 8.914011 CCACCTATCGTATATCTATGATGGAAA 58.086 37.037 5.55 0.00 35.11 3.13
1987 1997 9.958234 CACCTATCGTATATCTATGATGGAAAG 57.042 37.037 5.55 0.00 35.11 2.62
1988 1998 9.702253 ACCTATCGTATATCTATGATGGAAAGT 57.298 33.333 5.55 0.00 35.11 2.66
1993 2003 9.914131 TCGTATATCTATGATGGAAAGTTCAAG 57.086 33.333 0.00 0.00 0.00 3.02
1994 2004 9.698309 CGTATATCTATGATGGAAAGTTCAAGT 57.302 33.333 0.00 0.00 0.00 3.16
1999 2009 9.911788 ATCTATGATGGAAAGTTCAAGTACAAT 57.088 29.630 0.00 0.00 0.00 2.71
2000 2010 9.383519 TCTATGATGGAAAGTTCAAGTACAATC 57.616 33.333 0.00 0.00 0.00 2.67
2001 2011 9.166173 CTATGATGGAAAGTTCAAGTACAATCA 57.834 33.333 0.00 0.00 0.00 2.57
2002 2012 7.202016 TGATGGAAAGTTCAAGTACAATCAC 57.798 36.000 0.00 0.00 0.00 3.06
2003 2013 5.666969 TGGAAAGTTCAAGTACAATCACG 57.333 39.130 0.00 0.00 0.00 4.35
2004 2014 5.120399 TGGAAAGTTCAAGTACAATCACGT 58.880 37.500 0.00 0.00 0.00 4.49
2005 2015 5.007234 TGGAAAGTTCAAGTACAATCACGTG 59.993 40.000 9.94 9.94 0.00 4.49
2006 2016 5.007332 GGAAAGTTCAAGTACAATCACGTGT 59.993 40.000 16.51 0.00 35.43 4.49
2007 2017 6.431198 AAAGTTCAAGTACAATCACGTGTT 57.569 33.333 16.51 3.97 32.75 3.32
2008 2018 7.254522 GGAAAGTTCAAGTACAATCACGTGTTA 60.255 37.037 16.51 0.00 32.75 2.41
2009 2019 6.764877 AGTTCAAGTACAATCACGTGTTAG 57.235 37.500 16.51 8.76 32.75 2.34
2010 2020 6.509656 AGTTCAAGTACAATCACGTGTTAGA 58.490 36.000 16.51 0.00 32.75 2.10
2011 2021 6.982141 AGTTCAAGTACAATCACGTGTTAGAA 59.018 34.615 16.51 0.00 32.75 2.10
2012 2022 7.169308 AGTTCAAGTACAATCACGTGTTAGAAG 59.831 37.037 16.51 3.77 32.75 2.85
2013 2023 5.924254 TCAAGTACAATCACGTGTTAGAAGG 59.076 40.000 16.51 2.34 32.75 3.46
2014 2024 5.717078 AGTACAATCACGTGTTAGAAGGA 57.283 39.130 16.51 0.00 32.75 3.36
2015 2025 6.092955 AGTACAATCACGTGTTAGAAGGAA 57.907 37.500 16.51 0.00 32.75 3.36
2016 2026 6.518493 AGTACAATCACGTGTTAGAAGGAAA 58.482 36.000 16.51 0.00 32.75 3.13
2017 2027 5.668558 ACAATCACGTGTTAGAAGGAAAC 57.331 39.130 16.51 0.00 0.00 2.78
2018 2028 4.514066 ACAATCACGTGTTAGAAGGAAACC 59.486 41.667 16.51 0.00 0.00 3.27
2019 2029 4.618920 ATCACGTGTTAGAAGGAAACCT 57.381 40.909 16.51 0.00 33.87 3.50
2020 2030 5.733620 ATCACGTGTTAGAAGGAAACCTA 57.266 39.130 16.51 0.00 31.13 3.08
2021 2031 4.874970 TCACGTGTTAGAAGGAAACCTAC 58.125 43.478 16.51 0.00 31.13 3.18
2022 2032 4.341806 TCACGTGTTAGAAGGAAACCTACA 59.658 41.667 16.51 0.00 31.13 2.74
2023 2033 5.051816 CACGTGTTAGAAGGAAACCTACAA 58.948 41.667 7.58 0.00 31.13 2.41
2024 2034 5.176958 CACGTGTTAGAAGGAAACCTACAAG 59.823 44.000 7.58 0.00 31.13 3.16
2025 2035 5.163374 ACGTGTTAGAAGGAAACCTACAAGT 60.163 40.000 0.00 0.00 31.13 3.16
2026 2036 5.756833 CGTGTTAGAAGGAAACCTACAAGTT 59.243 40.000 0.00 0.00 31.13 2.66
2027 2037 6.259387 CGTGTTAGAAGGAAACCTACAAGTTT 59.741 38.462 0.00 0.00 42.56 2.66
2028 2038 7.439056 CGTGTTAGAAGGAAACCTACAAGTTTA 59.561 37.037 0.00 0.00 40.01 2.01
2029 2039 8.554528 GTGTTAGAAGGAAACCTACAAGTTTAC 58.445 37.037 0.00 0.00 40.01 2.01
2030 2040 8.266473 TGTTAGAAGGAAACCTACAAGTTTACA 58.734 33.333 2.48 0.00 42.13 2.41
2031 2041 9.112725 GTTAGAAGGAAACCTACAAGTTTACAA 57.887 33.333 2.48 0.00 42.13 2.41
2032 2042 7.803279 AGAAGGAAACCTACAAGTTTACAAG 57.197 36.000 2.48 0.00 42.13 3.16
2033 2043 6.771267 AGAAGGAAACCTACAAGTTTACAAGG 59.229 38.462 2.48 0.00 42.13 3.61
2034 2044 6.009908 AGGAAACCTACAAGTTTACAAGGT 57.990 37.500 2.48 0.00 42.13 3.50
2035 2045 6.060136 AGGAAACCTACAAGTTTACAAGGTC 58.940 40.000 2.48 0.00 42.13 3.85
2036 2046 5.824097 GGAAACCTACAAGTTTACAAGGTCA 59.176 40.000 0.00 0.00 39.87 4.02
2037 2047 6.489022 GGAAACCTACAAGTTTACAAGGTCAT 59.511 38.462 0.00 0.00 39.87 3.06
2038 2048 7.308408 GGAAACCTACAAGTTTACAAGGTCATC 60.308 40.741 0.00 0.00 39.87 2.92
2039 2049 6.182507 ACCTACAAGTTTACAAGGTCATCA 57.817 37.500 0.00 0.00 35.67 3.07
2040 2050 6.779860 ACCTACAAGTTTACAAGGTCATCAT 58.220 36.000 0.00 0.00 35.67 2.45
2041 2051 7.231467 ACCTACAAGTTTACAAGGTCATCATT 58.769 34.615 0.00 0.00 35.67 2.57
2042 2052 8.380099 ACCTACAAGTTTACAAGGTCATCATTA 58.620 33.333 0.00 0.00 35.67 1.90
2043 2053 8.665685 CCTACAAGTTTACAAGGTCATCATTAC 58.334 37.037 0.00 0.00 0.00 1.89
2044 2054 7.129109 ACAAGTTTACAAGGTCATCATTACG 57.871 36.000 0.00 0.00 0.00 3.18
2045 2055 6.708949 ACAAGTTTACAAGGTCATCATTACGT 59.291 34.615 0.00 0.00 0.00 3.57
2046 2056 7.874016 ACAAGTTTACAAGGTCATCATTACGTA 59.126 33.333 0.00 0.00 0.00 3.57
2047 2057 7.823149 AGTTTACAAGGTCATCATTACGTAC 57.177 36.000 0.00 0.00 0.00 3.67
2059 2069 7.966753 GTCATCATTACGTACACTAGAAGAACA 59.033 37.037 0.00 0.00 0.00 3.18
2096 2106 3.349927 GGGGCCACGTTAACTTAAAGAT 58.650 45.455 4.39 0.00 0.00 2.40
2199 2216 3.861002 CCCCCTCCCTCTCTCTAAG 57.139 63.158 0.00 0.00 0.00 2.18
2259 2276 8.843262 CATAATCCATCTATTTCACACACACAT 58.157 33.333 0.00 0.00 0.00 3.21
2594 2611 6.295349 CCACAATAGCCCTACTTATCACCTAG 60.295 46.154 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.838339 CCCTATAGTCACAAATAAGTTGATTCT 57.162 33.333 0.00 0.00 39.87 2.40
8 9 9.057089 CCCCTATAGTCACAAATAAGTTGATTC 57.943 37.037 0.00 0.00 39.87 2.52
9 10 8.557450 ACCCCTATAGTCACAAATAAGTTGATT 58.443 33.333 0.00 0.00 39.87 2.57
10 11 8.102484 ACCCCTATAGTCACAAATAAGTTGAT 57.898 34.615 0.00 0.00 39.87 2.57
11 12 7.504926 ACCCCTATAGTCACAAATAAGTTGA 57.495 36.000 0.00 0.00 39.87 3.18
12 13 8.483758 AGTACCCCTATAGTCACAAATAAGTTG 58.516 37.037 0.00 0.00 43.43 3.16
13 14 8.619683 AGTACCCCTATAGTCACAAATAAGTT 57.380 34.615 0.00 0.00 0.00 2.66
14 15 9.719433 TTAGTACCCCTATAGTCACAAATAAGT 57.281 33.333 0.00 0.00 0.00 2.24
18 19 9.097946 GGTATTAGTACCCCTATAGTCACAAAT 57.902 37.037 3.01 0.00 43.90 2.32
19 20 8.482852 GGTATTAGTACCCCTATAGTCACAAA 57.517 38.462 3.01 0.00 43.90 2.83
34 35 7.533426 TCTTCTTGTTCTCGTGGTATTAGTAC 58.467 38.462 0.00 0.00 0.00 2.73
35 36 7.148120 CCTCTTCTTGTTCTCGTGGTATTAGTA 60.148 40.741 0.00 0.00 0.00 1.82
36 37 6.350277 CCTCTTCTTGTTCTCGTGGTATTAGT 60.350 42.308 0.00 0.00 0.00 2.24
37 38 6.037098 CCTCTTCTTGTTCTCGTGGTATTAG 58.963 44.000 0.00 0.00 0.00 1.73
38 39 5.623824 GCCTCTTCTTGTTCTCGTGGTATTA 60.624 44.000 0.00 0.00 0.00 0.98
39 40 4.822026 CCTCTTCTTGTTCTCGTGGTATT 58.178 43.478 0.00 0.00 0.00 1.89
40 41 3.368531 GCCTCTTCTTGTTCTCGTGGTAT 60.369 47.826 0.00 0.00 0.00 2.73
41 42 2.029290 GCCTCTTCTTGTTCTCGTGGTA 60.029 50.000 0.00 0.00 0.00 3.25
42 43 1.270358 GCCTCTTCTTGTTCTCGTGGT 60.270 52.381 0.00 0.00 0.00 4.16
43 44 1.270305 TGCCTCTTCTTGTTCTCGTGG 60.270 52.381 0.00 0.00 0.00 4.94
44 45 2.154854 TGCCTCTTCTTGTTCTCGTG 57.845 50.000 0.00 0.00 0.00 4.35
45 46 3.409026 AATGCCTCTTCTTGTTCTCGT 57.591 42.857 0.00 0.00 0.00 4.18
46 47 6.018669 GGTATTAATGCCTCTTCTTGTTCTCG 60.019 42.308 14.77 0.00 0.00 4.04
47 48 6.018669 CGGTATTAATGCCTCTTCTTGTTCTC 60.019 42.308 18.93 0.00 0.00 2.87
48 49 5.817816 CGGTATTAATGCCTCTTCTTGTTCT 59.182 40.000 18.93 0.00 0.00 3.01
49 50 5.815740 TCGGTATTAATGCCTCTTCTTGTTC 59.184 40.000 18.93 0.00 0.00 3.18
50 51 5.741011 TCGGTATTAATGCCTCTTCTTGTT 58.259 37.500 18.93 0.00 0.00 2.83
51 52 5.353394 TCGGTATTAATGCCTCTTCTTGT 57.647 39.130 18.93 0.00 0.00 3.16
52 53 6.049149 TCTTCGGTATTAATGCCTCTTCTTG 58.951 40.000 18.93 3.51 0.00 3.02
53 54 6.235231 TCTTCGGTATTAATGCCTCTTCTT 57.765 37.500 18.93 0.00 0.00 2.52
54 55 5.871396 TCTTCGGTATTAATGCCTCTTCT 57.129 39.130 18.93 0.00 0.00 2.85
55 56 5.639931 GGATCTTCGGTATTAATGCCTCTTC 59.360 44.000 18.93 9.25 0.00 2.87
56 57 5.071788 TGGATCTTCGGTATTAATGCCTCTT 59.928 40.000 18.93 1.48 0.00 2.85
57 58 4.593206 TGGATCTTCGGTATTAATGCCTCT 59.407 41.667 18.93 0.99 0.00 3.69
58 59 4.894784 TGGATCTTCGGTATTAATGCCTC 58.105 43.478 18.93 9.90 0.00 4.70
59 60 4.974645 TGGATCTTCGGTATTAATGCCT 57.025 40.909 18.93 1.27 0.00 4.75
60 61 5.531287 ACTTTGGATCTTCGGTATTAATGCC 59.469 40.000 12.27 12.27 0.00 4.40
61 62 6.260050 TCACTTTGGATCTTCGGTATTAATGC 59.740 38.462 0.00 0.00 0.00 3.56
62 63 7.519008 GCTCACTTTGGATCTTCGGTATTAATG 60.519 40.741 0.00 0.00 0.00 1.90
63 64 6.483640 GCTCACTTTGGATCTTCGGTATTAAT 59.516 38.462 0.00 0.00 0.00 1.40
64 65 5.815740 GCTCACTTTGGATCTTCGGTATTAA 59.184 40.000 0.00 0.00 0.00 1.40
65 66 5.105106 TGCTCACTTTGGATCTTCGGTATTA 60.105 40.000 0.00 0.00 0.00 0.98
66 67 4.192317 GCTCACTTTGGATCTTCGGTATT 58.808 43.478 0.00 0.00 0.00 1.89
67 68 3.197766 TGCTCACTTTGGATCTTCGGTAT 59.802 43.478 0.00 0.00 0.00 2.73
68 69 2.565391 TGCTCACTTTGGATCTTCGGTA 59.435 45.455 0.00 0.00 0.00 4.02
69 70 1.347707 TGCTCACTTTGGATCTTCGGT 59.652 47.619 0.00 0.00 0.00 4.69
70 71 1.734465 GTGCTCACTTTGGATCTTCGG 59.266 52.381 0.00 0.00 0.00 4.30
71 72 2.693069 AGTGCTCACTTTGGATCTTCG 58.307 47.619 0.00 0.00 38.83 3.79
72 73 6.258947 GGTATTAGTGCTCACTTTGGATCTTC 59.741 42.308 7.92 0.00 42.54 2.87
73 74 6.116126 GGTATTAGTGCTCACTTTGGATCTT 58.884 40.000 7.92 0.00 42.54 2.40
74 75 5.189736 TGGTATTAGTGCTCACTTTGGATCT 59.810 40.000 7.92 0.00 42.54 2.75
75 76 5.294552 GTGGTATTAGTGCTCACTTTGGATC 59.705 44.000 7.92 0.00 42.54 3.36
76 77 5.186198 GTGGTATTAGTGCTCACTTTGGAT 58.814 41.667 7.92 1.61 42.54 3.41
77 78 4.041075 TGTGGTATTAGTGCTCACTTTGGA 59.959 41.667 7.92 0.00 42.54 3.53
78 79 4.323417 TGTGGTATTAGTGCTCACTTTGG 58.677 43.478 7.92 0.00 42.54 3.28
79 80 5.700832 TCTTGTGGTATTAGTGCTCACTTTG 59.299 40.000 7.92 0.00 42.54 2.77
80 81 5.865085 TCTTGTGGTATTAGTGCTCACTTT 58.135 37.500 7.92 0.00 42.54 2.66
81 82 5.483685 TCTTGTGGTATTAGTGCTCACTT 57.516 39.130 7.92 0.00 42.54 3.16
82 83 5.395768 GGATCTTGTGGTATTAGTGCTCACT 60.396 44.000 7.73 7.73 45.02 3.41
83 84 4.811557 GGATCTTGTGGTATTAGTGCTCAC 59.188 45.833 0.00 0.00 0.00 3.51
84 85 4.469586 TGGATCTTGTGGTATTAGTGCTCA 59.530 41.667 0.00 0.00 0.00 4.26
85 86 5.023533 TGGATCTTGTGGTATTAGTGCTC 57.976 43.478 0.00 0.00 0.00 4.26
86 87 5.435686 TTGGATCTTGTGGTATTAGTGCT 57.564 39.130 0.00 0.00 0.00 4.40
87 88 6.509418 TTTTGGATCTTGTGGTATTAGTGC 57.491 37.500 0.00 0.00 0.00 4.40
88 89 8.279970 TCATTTTGGATCTTGTGGTATTAGTG 57.720 34.615 0.00 0.00 0.00 2.74
89 90 7.067494 GCTCATTTTGGATCTTGTGGTATTAGT 59.933 37.037 0.00 0.00 0.00 2.24
90 91 7.067372 TGCTCATTTTGGATCTTGTGGTATTAG 59.933 37.037 0.00 0.00 0.00 1.73
91 92 6.889177 TGCTCATTTTGGATCTTGTGGTATTA 59.111 34.615 0.00 0.00 0.00 0.98
92 93 5.716228 TGCTCATTTTGGATCTTGTGGTATT 59.284 36.000 0.00 0.00 0.00 1.89
93 94 5.126061 GTGCTCATTTTGGATCTTGTGGTAT 59.874 40.000 0.00 0.00 0.00 2.73
94 95 4.458989 GTGCTCATTTTGGATCTTGTGGTA 59.541 41.667 0.00 0.00 0.00 3.25
95 96 3.256631 GTGCTCATTTTGGATCTTGTGGT 59.743 43.478 0.00 0.00 0.00 4.16
96 97 3.508793 AGTGCTCATTTTGGATCTTGTGG 59.491 43.478 0.00 0.00 0.00 4.17
97 98 4.778534 AGTGCTCATTTTGGATCTTGTG 57.221 40.909 0.00 0.00 0.00 3.33
98 99 7.831193 AGTATTAGTGCTCATTTTGGATCTTGT 59.169 33.333 0.00 0.00 0.00 3.16
99 100 8.218338 AGTATTAGTGCTCATTTTGGATCTTG 57.782 34.615 0.00 0.00 0.00 3.02
100 101 8.049117 TGAGTATTAGTGCTCATTTTGGATCTT 58.951 33.333 1.84 0.00 41.35 2.40
101 102 7.568349 TGAGTATTAGTGCTCATTTTGGATCT 58.432 34.615 1.84 0.00 41.35 2.75
102 103 7.792374 TGAGTATTAGTGCTCATTTTGGATC 57.208 36.000 1.84 0.00 41.35 3.36
121 122 9.742144 GGATCTCCTGTAAGTAATCTATGAGTA 57.258 37.037 0.00 0.00 0.00 2.59
122 123 8.228206 TGGATCTCCTGTAAGTAATCTATGAGT 58.772 37.037 0.00 0.00 36.82 3.41
123 124 8.642935 TGGATCTCCTGTAAGTAATCTATGAG 57.357 38.462 0.00 0.00 36.82 2.90
124 125 9.434275 TTTGGATCTCCTGTAAGTAATCTATGA 57.566 33.333 0.00 0.00 36.82 2.15
127 128 9.042450 TGTTTTGGATCTCCTGTAAGTAATCTA 57.958 33.333 0.00 0.00 36.82 1.98
128 129 7.918076 TGTTTTGGATCTCCTGTAAGTAATCT 58.082 34.615 0.00 0.00 36.82 2.40
129 130 8.561738 TTGTTTTGGATCTCCTGTAAGTAATC 57.438 34.615 0.00 0.00 36.82 1.75
130 131 7.121315 GCTTGTTTTGGATCTCCTGTAAGTAAT 59.879 37.037 0.00 0.00 36.82 1.89
131 132 6.430000 GCTTGTTTTGGATCTCCTGTAAGTAA 59.570 38.462 0.00 0.00 36.82 2.24
132 133 5.938125 GCTTGTTTTGGATCTCCTGTAAGTA 59.062 40.000 0.00 0.00 36.82 2.24
133 134 4.762251 GCTTGTTTTGGATCTCCTGTAAGT 59.238 41.667 0.00 0.00 36.82 2.24
134 135 4.761739 TGCTTGTTTTGGATCTCCTGTAAG 59.238 41.667 0.00 0.00 36.82 2.34
135 136 4.518970 GTGCTTGTTTTGGATCTCCTGTAA 59.481 41.667 0.00 0.00 36.82 2.41
136 137 4.072131 GTGCTTGTTTTGGATCTCCTGTA 58.928 43.478 0.00 0.00 36.82 2.74
137 138 2.887152 GTGCTTGTTTTGGATCTCCTGT 59.113 45.455 0.00 0.00 36.82 4.00
138 139 2.886523 TGTGCTTGTTTTGGATCTCCTG 59.113 45.455 0.00 0.00 36.82 3.86
139 140 2.887152 GTGTGCTTGTTTTGGATCTCCT 59.113 45.455 0.00 0.00 36.82 3.69
140 141 2.029918 GGTGTGCTTGTTTTGGATCTCC 60.030 50.000 0.00 0.00 0.00 3.71
141 142 2.622942 TGGTGTGCTTGTTTTGGATCTC 59.377 45.455 0.00 0.00 0.00 2.75
142 143 2.362077 GTGGTGTGCTTGTTTTGGATCT 59.638 45.455 0.00 0.00 0.00 2.75
143 144 2.100584 TGTGGTGTGCTTGTTTTGGATC 59.899 45.455 0.00 0.00 0.00 3.36
144 145 2.106566 TGTGGTGTGCTTGTTTTGGAT 58.893 42.857 0.00 0.00 0.00 3.41
145 146 1.550327 TGTGGTGTGCTTGTTTTGGA 58.450 45.000 0.00 0.00 0.00 3.53
146 147 2.600470 ATGTGGTGTGCTTGTTTTGG 57.400 45.000 0.00 0.00 0.00 3.28
147 148 5.752472 TCATAAATGTGGTGTGCTTGTTTTG 59.248 36.000 0.00 0.00 0.00 2.44
148 149 5.911752 TCATAAATGTGGTGTGCTTGTTTT 58.088 33.333 0.00 0.00 0.00 2.43
149 150 5.528043 TCATAAATGTGGTGTGCTTGTTT 57.472 34.783 0.00 0.00 0.00 2.83
150 151 5.528043 TTCATAAATGTGGTGTGCTTGTT 57.472 34.783 0.00 0.00 0.00 2.83
151 152 5.528043 TTTCATAAATGTGGTGTGCTTGT 57.472 34.783 0.00 0.00 0.00 3.16
152 153 7.424227 AATTTTCATAAATGTGGTGTGCTTG 57.576 32.000 0.00 0.00 34.27 4.01
153 154 8.147058 TGTAATTTTCATAAATGTGGTGTGCTT 58.853 29.630 0.00 0.00 34.27 3.91
154 155 7.598493 GTGTAATTTTCATAAATGTGGTGTGCT 59.402 33.333 0.00 0.00 34.27 4.40
155 156 7.383572 TGTGTAATTTTCATAAATGTGGTGTGC 59.616 33.333 0.00 0.00 34.27 4.57
156 157 8.809159 TGTGTAATTTTCATAAATGTGGTGTG 57.191 30.769 0.00 0.00 34.27 3.82
157 158 9.638239 GATGTGTAATTTTCATAAATGTGGTGT 57.362 29.630 0.00 0.00 34.27 4.16
158 159 9.636879 TGATGTGTAATTTTCATAAATGTGGTG 57.363 29.630 0.00 0.00 34.27 4.17
251 252 5.299949 CGAACATCTTGATCATGGGTATCA 58.700 41.667 8.60 0.00 0.00 2.15
256 257 2.291365 TGCGAACATCTTGATCATGGG 58.709 47.619 8.60 4.62 0.00 4.00
268 269 1.603456 TGGTTCACACATGCGAACAT 58.397 45.000 19.17 0.00 42.67 2.71
279 280 3.133141 TCGAATGTCCATTGGTTCACA 57.867 42.857 1.86 0.13 0.00 3.58
309 310 9.305925 GCCGATTTTCATTTTAAATCTTCTCAT 57.694 29.630 0.00 0.00 38.99 2.90
310 311 8.522830 AGCCGATTTTCATTTTAAATCTTCTCA 58.477 29.630 0.00 0.00 38.99 3.27
311 312 8.917415 AGCCGATTTTCATTTTAAATCTTCTC 57.083 30.769 0.00 0.00 38.99 2.87
359 360 4.202441 GCTCACATTGGATGTCTTGGTAT 58.798 43.478 0.00 0.00 42.70 2.73
785 786 3.816091 TCGTGCGTTTGTTTATTCATGG 58.184 40.909 0.00 0.00 0.00 3.66
796 797 3.120820 TGTTACTATTGCTCGTGCGTTTG 60.121 43.478 4.84 0.00 43.34 2.93
800 801 1.588404 CCTGTTACTATTGCTCGTGCG 59.412 52.381 4.84 0.00 43.34 5.34
801 802 2.860735 CTCCTGTTACTATTGCTCGTGC 59.139 50.000 1.71 1.71 40.20 5.34
1092 1093 3.831637 ACCTTGGCCCTTGCACCA 61.832 61.111 0.00 0.00 40.13 4.17
1175 1176 1.001378 AGCAAAATTCCTGTGTGACGC 60.001 47.619 0.00 0.00 0.00 5.19
1212 1213 1.398390 GCATCAACACTCCGATTGTCC 59.602 52.381 0.00 0.00 0.00 4.02
1301 1302 5.700832 TGTTCTAGCATTTTCTCGACATTGT 59.299 36.000 0.00 0.00 0.00 2.71
1324 1325 6.320171 CAGTCATTGTGCCTTTCTTAGAATG 58.680 40.000 0.00 0.00 0.00 2.67
1369 1370 4.953667 ACTGTGGTATCATAGTGCTCATG 58.046 43.478 4.36 0.00 42.51 3.07
1501 1511 7.227049 TGAGCATAATGATCCTACAATCGTA 57.773 36.000 0.00 0.00 30.48 3.43
1503 1513 8.193438 TCTATGAGCATAATGATCCTACAATCG 58.807 37.037 0.00 0.00 30.48 3.34
1660 1670 5.234752 ACTAACATTGATGTCGCTACAACA 58.765 37.500 0.00 0.00 40.80 3.33
1661 1671 5.779806 ACTAACATTGATGTCGCTACAAC 57.220 39.130 0.00 0.00 40.80 3.32
1701 1711 5.722021 AAACAAAGGTGACAACAGAACTT 57.278 34.783 0.00 0.00 0.00 2.66
1706 1716 7.707104 AGAGAATAAAACAAAGGTGACAACAG 58.293 34.615 0.00 0.00 0.00 3.16
1733 1743 0.806868 ATGGCGCAGTGATGTCAAAG 59.193 50.000 10.83 0.00 0.00 2.77
1753 1763 8.888579 ATAGAAGATTTACGGGACATAAACAG 57.111 34.615 0.00 0.00 25.60 3.16
1788 1798 9.914131 GTGGCTTATTTCTCTCTTGTTTTAATT 57.086 29.630 0.00 0.00 0.00 1.40
1789 1799 9.301897 AGTGGCTTATTTCTCTCTTGTTTTAAT 57.698 29.630 0.00 0.00 0.00 1.40
1790 1800 8.691661 AGTGGCTTATTTCTCTCTTGTTTTAA 57.308 30.769 0.00 0.00 0.00 1.52
1791 1801 9.216117 GTAGTGGCTTATTTCTCTCTTGTTTTA 57.784 33.333 0.00 0.00 0.00 1.52
1792 1802 7.095187 CGTAGTGGCTTATTTCTCTCTTGTTTT 60.095 37.037 0.00 0.00 0.00 2.43
1793 1803 6.369065 CGTAGTGGCTTATTTCTCTCTTGTTT 59.631 38.462 0.00 0.00 0.00 2.83
1794 1804 5.869888 CGTAGTGGCTTATTTCTCTCTTGTT 59.130 40.000 0.00 0.00 0.00 2.83
1795 1805 5.047235 ACGTAGTGGCTTATTTCTCTCTTGT 60.047 40.000 0.00 0.00 42.51 3.16
1796 1806 5.411781 ACGTAGTGGCTTATTTCTCTCTTG 58.588 41.667 0.00 0.00 42.51 3.02
1797 1807 5.662674 ACGTAGTGGCTTATTTCTCTCTT 57.337 39.130 0.00 0.00 42.51 2.85
1798 1808 5.185249 TGAACGTAGTGGCTTATTTCTCTCT 59.815 40.000 0.00 0.00 45.00 3.10
1799 1809 5.408356 TGAACGTAGTGGCTTATTTCTCTC 58.592 41.667 0.00 0.00 45.00 3.20
1800 1810 5.401531 TGAACGTAGTGGCTTATTTCTCT 57.598 39.130 0.00 0.00 45.00 3.10
1801 1811 5.234543 GGATGAACGTAGTGGCTTATTTCTC 59.765 44.000 0.00 0.00 45.00 2.87
1802 1812 5.116882 GGATGAACGTAGTGGCTTATTTCT 58.883 41.667 0.00 0.00 45.00 2.52
1803 1813 4.873827 TGGATGAACGTAGTGGCTTATTTC 59.126 41.667 0.00 0.00 45.00 2.17
1804 1814 4.634443 GTGGATGAACGTAGTGGCTTATTT 59.366 41.667 0.00 0.00 45.00 1.40
1805 1815 4.189231 GTGGATGAACGTAGTGGCTTATT 58.811 43.478 0.00 0.00 45.00 1.40
1806 1816 3.196901 TGTGGATGAACGTAGTGGCTTAT 59.803 43.478 0.00 0.00 45.00 1.73
1807 1817 2.563620 TGTGGATGAACGTAGTGGCTTA 59.436 45.455 0.00 0.00 45.00 3.09
1808 1818 1.346395 TGTGGATGAACGTAGTGGCTT 59.654 47.619 0.00 0.00 45.00 4.35
1809 1819 0.973632 TGTGGATGAACGTAGTGGCT 59.026 50.000 0.00 0.00 45.00 4.75
1810 1820 2.024176 ATGTGGATGAACGTAGTGGC 57.976 50.000 0.00 0.00 45.00 5.01
1811 1821 3.132289 ACCTATGTGGATGAACGTAGTGG 59.868 47.826 0.00 0.00 39.61 4.00
1812 1822 4.386867 ACCTATGTGGATGAACGTAGTG 57.613 45.455 0.00 0.00 39.61 2.74
1813 1823 6.534475 TTAACCTATGTGGATGAACGTAGT 57.466 37.500 0.00 0.00 41.18 2.73
1814 1824 8.433421 AATTTAACCTATGTGGATGAACGTAG 57.567 34.615 0.00 0.00 38.75 3.51
1816 1826 8.974060 ATAATTTAACCTATGTGGATGAACGT 57.026 30.769 0.00 0.00 39.71 3.99
1823 1833 9.535170 TGGTCAAAATAATTTAACCTATGTGGA 57.465 29.630 0.00 0.00 39.71 4.02
1860 1870 9.760077 ACATCTTTAAATCTCGTCCGTTTATAT 57.240 29.630 0.00 0.00 0.00 0.86
1862 1872 9.590451 TTACATCTTTAAATCTCGTCCGTTTAT 57.410 29.630 0.00 0.00 0.00 1.40
1863 1873 8.863049 GTTACATCTTTAAATCTCGTCCGTTTA 58.137 33.333 0.00 0.00 0.00 2.01
1864 1874 7.411157 CGTTACATCTTTAAATCTCGTCCGTTT 60.411 37.037 0.00 0.00 0.00 3.60
1865 1875 6.034256 CGTTACATCTTTAAATCTCGTCCGTT 59.966 38.462 0.00 0.00 0.00 4.44
1866 1876 5.514204 CGTTACATCTTTAAATCTCGTCCGT 59.486 40.000 0.00 0.00 0.00 4.69
1867 1877 5.514204 ACGTTACATCTTTAAATCTCGTCCG 59.486 40.000 0.00 0.00 0.00 4.79
1868 1878 6.882458 ACGTTACATCTTTAAATCTCGTCC 57.118 37.500 0.00 0.00 0.00 4.79
1869 1879 8.853345 TGTAACGTTACATCTTTAAATCTCGTC 58.147 33.333 31.86 5.19 38.64 4.20
1870 1880 8.746922 TGTAACGTTACATCTTTAAATCTCGT 57.253 30.769 31.86 0.00 38.64 4.18
1906 1916 8.911965 TGTGTGTCCAAAACAATGCATATATAT 58.088 29.630 0.00 0.00 40.31 0.86
1907 1917 8.286191 TGTGTGTCCAAAACAATGCATATATA 57.714 30.769 0.00 0.00 40.31 0.86
1908 1918 7.167924 TGTGTGTCCAAAACAATGCATATAT 57.832 32.000 0.00 0.00 40.31 0.86
1909 1919 6.581171 TGTGTGTCCAAAACAATGCATATA 57.419 33.333 0.00 0.00 40.31 0.86
1910 1920 5.465532 TGTGTGTCCAAAACAATGCATAT 57.534 34.783 0.00 0.00 40.31 1.78
1911 1921 4.926140 TGTGTGTCCAAAACAATGCATA 57.074 36.364 0.00 0.00 40.31 3.14
1912 1922 3.815856 TGTGTGTCCAAAACAATGCAT 57.184 38.095 0.00 0.00 40.31 3.96
1913 1923 3.599730 TTGTGTGTCCAAAACAATGCA 57.400 38.095 0.00 0.00 40.31 3.96
1914 1924 3.932089 ACTTTGTGTGTCCAAAACAATGC 59.068 39.130 0.00 0.00 40.31 3.56
1915 1925 5.289193 CAGACTTTGTGTGTCCAAAACAATG 59.711 40.000 0.00 0.00 40.31 2.82
1916 1926 5.047377 ACAGACTTTGTGTGTCCAAAACAAT 60.047 36.000 0.00 0.00 35.05 2.71
1917 1927 4.279671 ACAGACTTTGTGTGTCCAAAACAA 59.720 37.500 0.00 0.00 35.05 2.83
1918 1928 3.823873 ACAGACTTTGTGTGTCCAAAACA 59.176 39.130 0.00 0.00 35.05 2.83
1919 1929 4.412207 GACAGACTTTGTGTGTCCAAAAC 58.588 43.478 14.48 0.00 46.56 2.43
1920 1930 4.695217 GACAGACTTTGTGTGTCCAAAA 57.305 40.909 14.48 0.00 46.56 2.44
1926 1936 4.765273 TGTACATGACAGACTTTGTGTGT 58.235 39.130 0.00 0.09 42.66 3.72
1927 1937 5.929697 ATGTACATGACAGACTTTGTGTG 57.070 39.130 7.78 0.00 42.79 3.82
1928 1938 9.534565 GATATATGTACATGACAGACTTTGTGT 57.465 33.333 18.81 0.00 42.79 3.72
1929 1939 9.755804 AGATATATGTACATGACAGACTTTGTG 57.244 33.333 18.81 0.00 42.79 3.33
1934 1944 8.303156 GCTGAAGATATATGTACATGACAGACT 58.697 37.037 18.81 7.31 42.79 3.24
1935 1945 7.543868 GGCTGAAGATATATGTACATGACAGAC 59.456 40.741 18.81 13.47 42.79 3.51
1936 1946 7.233348 TGGCTGAAGATATATGTACATGACAGA 59.767 37.037 18.81 0.00 42.79 3.41
1937 1947 7.330454 GTGGCTGAAGATATATGTACATGACAG 59.670 40.741 18.81 15.13 42.79 3.51
1938 1948 7.154656 GTGGCTGAAGATATATGTACATGACA 58.845 38.462 18.81 3.56 43.97 3.58
1939 1949 6.591834 GGTGGCTGAAGATATATGTACATGAC 59.408 42.308 18.81 6.91 0.00 3.06
1940 1950 6.498303 AGGTGGCTGAAGATATATGTACATGA 59.502 38.462 18.81 6.68 0.00 3.07
1941 1951 6.705302 AGGTGGCTGAAGATATATGTACATG 58.295 40.000 18.81 0.00 0.00 3.21
1942 1952 6.942163 AGGTGGCTGAAGATATATGTACAT 57.058 37.500 13.93 13.93 0.00 2.29
1943 1953 7.148069 CGATAGGTGGCTGAAGATATATGTACA 60.148 40.741 0.00 0.00 0.00 2.90
1944 1954 7.148052 ACGATAGGTGGCTGAAGATATATGTAC 60.148 40.741 0.00 0.00 43.77 2.90
1945 1955 6.890268 ACGATAGGTGGCTGAAGATATATGTA 59.110 38.462 0.00 0.00 43.77 2.29
1946 1956 5.717178 ACGATAGGTGGCTGAAGATATATGT 59.283 40.000 0.00 0.00 43.77 2.29
1947 1957 6.214191 ACGATAGGTGGCTGAAGATATATG 57.786 41.667 0.00 0.00 43.77 1.78
1948 1958 9.815306 ATATACGATAGGTGGCTGAAGATATAT 57.185 33.333 0.00 0.00 43.77 0.86
1949 1959 9.286170 GATATACGATAGGTGGCTGAAGATATA 57.714 37.037 0.00 0.00 43.77 0.86
1950 1960 8.001875 AGATATACGATAGGTGGCTGAAGATAT 58.998 37.037 0.00 0.00 43.77 1.63
1951 1961 7.347252 AGATATACGATAGGTGGCTGAAGATA 58.653 38.462 0.00 0.00 43.77 1.98
1952 1962 6.191315 AGATATACGATAGGTGGCTGAAGAT 58.809 40.000 0.00 0.00 43.77 2.40
1953 1963 5.571285 AGATATACGATAGGTGGCTGAAGA 58.429 41.667 0.00 0.00 43.77 2.87
1954 1964 5.906113 AGATATACGATAGGTGGCTGAAG 57.094 43.478 0.00 0.00 43.77 3.02
1955 1965 7.116736 TCATAGATATACGATAGGTGGCTGAA 58.883 38.462 0.00 0.00 43.77 3.02
1956 1966 6.659824 TCATAGATATACGATAGGTGGCTGA 58.340 40.000 0.00 0.00 43.77 4.26
1957 1967 6.944234 TCATAGATATACGATAGGTGGCTG 57.056 41.667 0.00 0.00 43.77 4.85
1958 1968 6.491745 CCATCATAGATATACGATAGGTGGCT 59.508 42.308 0.00 0.00 43.77 4.75
1959 1969 6.490381 TCCATCATAGATATACGATAGGTGGC 59.510 42.308 0.00 0.00 43.77 5.01
1960 1970 8.465273 TTCCATCATAGATATACGATAGGTGG 57.535 38.462 0.00 0.00 43.77 4.61
1961 1971 9.958234 CTTTCCATCATAGATATACGATAGGTG 57.042 37.037 0.00 0.00 43.77 4.00
1962 1972 9.702253 ACTTTCCATCATAGATATACGATAGGT 57.298 33.333 0.00 0.00 43.77 3.08
1967 1977 9.914131 CTTGAACTTTCCATCATAGATATACGA 57.086 33.333 0.00 0.00 0.00 3.43
1968 1978 9.698309 ACTTGAACTTTCCATCATAGATATACG 57.302 33.333 0.00 0.00 0.00 3.06
1973 1983 9.911788 ATTGTACTTGAACTTTCCATCATAGAT 57.088 29.630 0.00 0.00 0.00 1.98
1974 1984 9.383519 GATTGTACTTGAACTTTCCATCATAGA 57.616 33.333 0.00 0.00 0.00 1.98
1975 1985 9.166173 TGATTGTACTTGAACTTTCCATCATAG 57.834 33.333 0.00 0.00 0.00 2.23
1976 1986 8.946085 GTGATTGTACTTGAACTTTCCATCATA 58.054 33.333 0.00 0.00 0.00 2.15
1977 1987 7.361201 CGTGATTGTACTTGAACTTTCCATCAT 60.361 37.037 0.00 0.00 0.00 2.45
1978 1988 6.073276 CGTGATTGTACTTGAACTTTCCATCA 60.073 38.462 0.00 0.00 0.00 3.07
1979 1989 6.073222 ACGTGATTGTACTTGAACTTTCCATC 60.073 38.462 0.00 0.00 0.00 3.51
1980 1990 5.763204 ACGTGATTGTACTTGAACTTTCCAT 59.237 36.000 0.00 0.00 0.00 3.41
1981 1991 5.007234 CACGTGATTGTACTTGAACTTTCCA 59.993 40.000 10.90 0.00 0.00 3.53
1982 1992 5.007332 ACACGTGATTGTACTTGAACTTTCC 59.993 40.000 25.01 0.00 0.00 3.13
1983 1993 6.044512 ACACGTGATTGTACTTGAACTTTC 57.955 37.500 25.01 0.00 0.00 2.62
1984 1994 6.431198 AACACGTGATTGTACTTGAACTTT 57.569 33.333 25.01 0.00 0.00 2.66
1985 1995 6.982141 TCTAACACGTGATTGTACTTGAACTT 59.018 34.615 25.01 2.91 0.00 2.66
1986 1996 6.509656 TCTAACACGTGATTGTACTTGAACT 58.490 36.000 25.01 0.00 0.00 3.01
1987 1997 6.758593 TCTAACACGTGATTGTACTTGAAC 57.241 37.500 25.01 0.00 0.00 3.18
1988 1998 6.422701 CCTTCTAACACGTGATTGTACTTGAA 59.577 38.462 25.01 11.03 0.00 2.69
1989 1999 5.924254 CCTTCTAACACGTGATTGTACTTGA 59.076 40.000 25.01 4.13 0.00 3.02
1990 2000 5.924254 TCCTTCTAACACGTGATTGTACTTG 59.076 40.000 25.01 2.86 0.00 3.16
1991 2001 6.092955 TCCTTCTAACACGTGATTGTACTT 57.907 37.500 25.01 6.55 0.00 2.24
1992 2002 5.717078 TCCTTCTAACACGTGATTGTACT 57.283 39.130 25.01 0.00 0.00 2.73
1993 2003 6.347160 GGTTTCCTTCTAACACGTGATTGTAC 60.347 42.308 25.01 6.43 0.00 2.90
1994 2004 5.697633 GGTTTCCTTCTAACACGTGATTGTA 59.302 40.000 25.01 4.40 0.00 2.41
1995 2005 4.514066 GGTTTCCTTCTAACACGTGATTGT 59.486 41.667 25.01 6.79 0.00 2.71
1996 2006 4.755123 AGGTTTCCTTCTAACACGTGATTG 59.245 41.667 25.01 12.08 0.00 2.67
1997 2007 4.969484 AGGTTTCCTTCTAACACGTGATT 58.031 39.130 25.01 14.90 0.00 2.57
1998 2008 4.618920 AGGTTTCCTTCTAACACGTGAT 57.381 40.909 25.01 14.02 0.00 3.06
1999 2009 4.341806 TGTAGGTTTCCTTCTAACACGTGA 59.658 41.667 25.01 0.00 34.61 4.35
2000 2010 4.624015 TGTAGGTTTCCTTCTAACACGTG 58.376 43.478 15.48 15.48 34.61 4.49
2001 2011 4.942761 TGTAGGTTTCCTTCTAACACGT 57.057 40.909 0.00 0.00 34.61 4.49
2002 2012 5.295152 ACTTGTAGGTTTCCTTCTAACACG 58.705 41.667 0.00 0.00 34.61 4.49
2003 2013 7.563888 AAACTTGTAGGTTTCCTTCTAACAC 57.436 36.000 0.00 0.00 34.79 3.32
2004 2014 8.266473 TGTAAACTTGTAGGTTTCCTTCTAACA 58.734 33.333 0.00 0.00 39.66 2.41
2005 2015 8.667076 TGTAAACTTGTAGGTTTCCTTCTAAC 57.333 34.615 0.00 0.00 39.66 2.34
2006 2016 9.333724 CTTGTAAACTTGTAGGTTTCCTTCTAA 57.666 33.333 0.00 0.00 39.66 2.10
2007 2017 7.935210 CCTTGTAAACTTGTAGGTTTCCTTCTA 59.065 37.037 0.00 0.00 39.66 2.10
2008 2018 6.771267 CCTTGTAAACTTGTAGGTTTCCTTCT 59.229 38.462 0.00 0.00 39.66 2.85
2009 2019 6.544931 ACCTTGTAAACTTGTAGGTTTCCTTC 59.455 38.462 0.00 0.00 39.66 3.46
2010 2020 6.429151 ACCTTGTAAACTTGTAGGTTTCCTT 58.571 36.000 0.00 0.00 39.66 3.36
2011 2021 6.009908 ACCTTGTAAACTTGTAGGTTTCCT 57.990 37.500 0.00 0.00 39.66 3.36
2012 2022 5.824097 TGACCTTGTAAACTTGTAGGTTTCC 59.176 40.000 0.00 0.00 39.25 3.13
2013 2023 6.930667 TGACCTTGTAAACTTGTAGGTTTC 57.069 37.500 0.00 0.00 39.25 2.78
2014 2024 7.057894 TGATGACCTTGTAAACTTGTAGGTTT 58.942 34.615 0.00 0.00 39.25 3.27
2015 2025 6.597562 TGATGACCTTGTAAACTTGTAGGTT 58.402 36.000 0.00 0.00 39.25 3.50
2016 2026 6.182507 TGATGACCTTGTAAACTTGTAGGT 57.817 37.500 0.00 0.00 41.74 3.08
2017 2027 7.687941 AATGATGACCTTGTAAACTTGTAGG 57.312 36.000 0.00 0.00 0.00 3.18
2018 2028 8.380644 CGTAATGATGACCTTGTAAACTTGTAG 58.619 37.037 0.00 0.00 0.00 2.74
2019 2029 7.874016 ACGTAATGATGACCTTGTAAACTTGTA 59.126 33.333 0.00 0.00 0.00 2.41
2020 2030 6.708949 ACGTAATGATGACCTTGTAAACTTGT 59.291 34.615 0.00 0.00 0.00 3.16
2021 2031 7.129109 ACGTAATGATGACCTTGTAAACTTG 57.871 36.000 0.00 0.00 0.00 3.16
2022 2032 7.874016 TGTACGTAATGATGACCTTGTAAACTT 59.126 33.333 0.00 0.00 0.00 2.66
2023 2033 7.330208 GTGTACGTAATGATGACCTTGTAAACT 59.670 37.037 0.00 0.00 0.00 2.66
2024 2034 7.330208 AGTGTACGTAATGATGACCTTGTAAAC 59.670 37.037 0.00 0.00 0.00 2.01
2025 2035 7.380536 AGTGTACGTAATGATGACCTTGTAAA 58.619 34.615 0.00 0.00 0.00 2.01
2026 2036 6.927416 AGTGTACGTAATGATGACCTTGTAA 58.073 36.000 0.00 0.00 0.00 2.41
2027 2037 6.519679 AGTGTACGTAATGATGACCTTGTA 57.480 37.500 0.00 0.00 0.00 2.41
2028 2038 5.401531 AGTGTACGTAATGATGACCTTGT 57.598 39.130 0.00 0.00 0.00 3.16
2029 2039 6.792326 TCTAGTGTACGTAATGATGACCTTG 58.208 40.000 0.00 0.00 0.00 3.61
2030 2040 7.338703 TCTTCTAGTGTACGTAATGATGACCTT 59.661 37.037 0.00 0.00 0.00 3.50
2031 2041 6.827251 TCTTCTAGTGTACGTAATGATGACCT 59.173 38.462 0.00 0.00 0.00 3.85
2032 2042 7.024340 TCTTCTAGTGTACGTAATGATGACC 57.976 40.000 0.00 0.00 0.00 4.02
2033 2043 7.966753 TGTTCTTCTAGTGTACGTAATGATGAC 59.033 37.037 0.00 0.00 0.00 3.06
2034 2044 7.966753 GTGTTCTTCTAGTGTACGTAATGATGA 59.033 37.037 0.00 0.00 0.00 2.92
2035 2045 7.220300 GGTGTTCTTCTAGTGTACGTAATGATG 59.780 40.741 0.00 0.00 0.00 3.07
2036 2046 7.256286 GGTGTTCTTCTAGTGTACGTAATGAT 58.744 38.462 0.00 0.00 0.00 2.45
2037 2047 6.349611 GGGTGTTCTTCTAGTGTACGTAATGA 60.350 42.308 0.00 0.00 0.00 2.57
2038 2048 5.803967 GGGTGTTCTTCTAGTGTACGTAATG 59.196 44.000 0.00 0.00 0.00 1.90
2039 2049 5.392380 CGGGTGTTCTTCTAGTGTACGTAAT 60.392 44.000 0.00 0.00 0.00 1.89
2040 2050 4.083324 CGGGTGTTCTTCTAGTGTACGTAA 60.083 45.833 0.00 0.00 0.00 3.18
2041 2051 3.436704 CGGGTGTTCTTCTAGTGTACGTA 59.563 47.826 0.00 0.00 0.00 3.57
2042 2052 2.227388 CGGGTGTTCTTCTAGTGTACGT 59.773 50.000 0.00 0.00 0.00 3.57
2043 2053 2.227388 ACGGGTGTTCTTCTAGTGTACG 59.773 50.000 0.00 0.00 0.00 3.67
2044 2054 3.572584 CACGGGTGTTCTTCTAGTGTAC 58.427 50.000 0.00 0.00 0.00 2.90
2045 2055 2.029649 GCACGGGTGTTCTTCTAGTGTA 60.030 50.000 0.25 0.00 0.00 2.90
2046 2056 1.270147 GCACGGGTGTTCTTCTAGTGT 60.270 52.381 0.25 0.00 0.00 3.55
2047 2057 1.429463 GCACGGGTGTTCTTCTAGTG 58.571 55.000 0.25 0.00 0.00 2.74
2096 2106 5.220700 GGTCGCCAATGTCGTAATATTGAAA 60.221 40.000 0.00 0.00 36.41 2.69
2132 2142 3.874543 GTGTGTGTGTGTGTGAGGATTTA 59.125 43.478 0.00 0.00 0.00 1.40
2143 2153 1.696097 GGGAGGGAGTGTGTGTGTGT 61.696 60.000 0.00 0.00 0.00 3.72
2144 2154 1.071471 GGGAGGGAGTGTGTGTGTG 59.929 63.158 0.00 0.00 0.00 3.82
2199 2216 6.205464 CCCAATAAGATGGATATGTGTGTGTC 59.795 42.308 0.00 0.00 43.54 3.67
2293 2310 1.542915 CCTCAGTTCTGGTGGCAAATG 59.457 52.381 0.00 0.00 0.00 2.32
2594 2611 6.609237 TCATAAGTCATGCATCTGCTTAAC 57.391 37.500 14.30 0.00 42.66 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.