Multiple sequence alignment - TraesCS4A01G449300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G449300 chr4A 100.000 5394 0 0 1 5394 715506189 715511582 0.000000e+00 9961.0
1 TraesCS4A01G449300 chr4A 80.563 2948 495 54 1391 4290 714418709 714421626 0.000000e+00 2198.0
2 TraesCS4A01G449300 chr4A 81.430 1874 323 23 1382 3246 715118542 715120399 0.000000e+00 1509.0
3 TraesCS4A01G449300 chr4A 86.895 496 35 6 4688 5183 714421895 714422360 3.700000e-146 529.0
4 TraesCS4A01G449300 chr4A 78.636 440 78 10 3715 4146 715159710 715160141 1.480000e-70 278.0
5 TraesCS4A01G449300 chr4A 90.863 197 13 5 4331 4523 714421700 714421895 5.360000e-65 259.0
6 TraesCS4A01G449300 chr4A 80.240 334 59 5 3292 3623 715133811 715134139 1.500000e-60 244.0
7 TraesCS4A01G449300 chr4A 89.286 140 9 4 5179 5314 714422432 714422569 2.580000e-38 171.0
8 TraesCS4A01G449300 chr4A 82.857 175 11 9 671 842 522040097 522039939 7.290000e-29 139.0
9 TraesCS4A01G449300 chr4A 80.925 173 21 6 671 840 639206213 639206050 5.670000e-25 126.0
10 TraesCS4A01G449300 chr7A 93.683 2992 173 10 1311 4291 17812345 17809359 0.000000e+00 4464.0
11 TraesCS4A01G449300 chr7A 81.443 2856 458 55 1364 4176 17443972 17441146 0.000000e+00 2272.0
12 TraesCS4A01G449300 chr7A 80.615 2796 485 45 1391 4146 17888015 17885237 0.000000e+00 2108.0
13 TraesCS4A01G449300 chr7A 79.382 2944 536 47 1385 4286 17774692 17771778 0.000000e+00 2008.0
14 TraesCS4A01G449300 chr7A 79.277 2823 511 55 1364 4146 18045145 18042357 0.000000e+00 1905.0
15 TraesCS4A01G449300 chr7A 81.178 2258 387 33 1385 3627 18501239 18503473 0.000000e+00 1781.0
16 TraesCS4A01G449300 chr7A 84.513 1130 98 42 4288 5389 17809312 17808232 0.000000e+00 1046.0
17 TraesCS4A01G449300 chr7A 84.045 1078 111 26 4331 5389 18128205 18127170 0.000000e+00 981.0
18 TraesCS4A01G449300 chr7A 76.286 1653 318 53 2672 4290 18129886 18128274 0.000000e+00 813.0
19 TraesCS4A01G449300 chr7A 98.355 304 3 2 1 304 293418573 293418272 2.860000e-147 532.0
20 TraesCS4A01G449300 chr7A 84.458 489 46 15 830 1313 17812839 17812376 6.370000e-124 455.0
21 TraesCS4A01G449300 chr7A 78.300 447 76 16 3192 3627 17740571 17740135 8.910000e-68 268.0
22 TraesCS4A01G449300 chr7A 82.946 258 29 8 417 666 17813126 17812876 9.100000e-53 219.0
23 TraesCS4A01G449300 chr7A 86.555 119 16 0 1001 1119 18047472 18047354 1.220000e-26 132.0
24 TraesCS4A01G449300 chr7A 76.378 127 18 5 721 846 606326453 606326338 2.100000e-04 58.4
25 TraesCS4A01G449300 chrUn 94.369 1829 96 4 2424 4247 50619741 50617915 0.000000e+00 2800.0
26 TraesCS4A01G449300 chrUn 80.240 2839 496 48 1352 4146 278347048 278349865 0.000000e+00 2074.0
27 TraesCS4A01G449300 chrUn 80.373 2787 486 41 1391 4134 294163402 294166170 0.000000e+00 2060.0
28 TraesCS4A01G449300 chrUn 87.077 797 71 13 4540 5320 50617536 50616756 0.000000e+00 872.0
29 TraesCS4A01G449300 chrUn 85.746 456 45 15 852 1304 467579981 467580419 1.060000e-126 464.0
30 TraesCS4A01G449300 chrUn 85.714 168 17 3 485 649 467579728 467579891 2.580000e-38 171.0
31 TraesCS4A01G449300 chrUn 95.890 73 3 0 4461 4533 50617666 50617594 9.490000e-23 119.0
32 TraesCS4A01G449300 chrUn 90.000 90 7 1 4348 4437 50617825 50617738 1.230000e-21 115.0
33 TraesCS4A01G449300 chrUn 93.333 75 5 0 1045 1119 50586932 50586858 1.590000e-20 111.0
34 TraesCS4A01G449300 chrUn 93.333 75 5 0 1045 1119 278339265 278339339 1.590000e-20 111.0
35 TraesCS4A01G449300 chrUn 93.333 75 5 0 1045 1119 278346542 278346616 1.590000e-20 111.0
36 TraesCS4A01G449300 chr6B 80.516 2715 470 49 1386 4061 208175886 208178580 0.000000e+00 2028.0
37 TraesCS4A01G449300 chr6B 98.361 305 4 1 1 305 14636230 14635927 7.950000e-148 534.0
38 TraesCS4A01G449300 chr3D 86.583 559 44 14 4823 5377 23632020 23631489 6.020000e-164 588.0
39 TraesCS4A01G449300 chr4B 98.680 303 3 1 1 303 626957743 626958044 2.210000e-148 536.0
40 TraesCS4A01G449300 chr2B 98.046 307 4 2 1 306 763174619 763174924 2.860000e-147 532.0
41 TraesCS4A01G449300 chr2B 75.410 183 17 15 671 846 235054193 235054354 4.510000e-06 63.9
42 TraesCS4A01G449300 chr1B 98.355 304 4 1 1 303 614780921 614781224 2.860000e-147 532.0
43 TraesCS4A01G449300 chr1B 98.026 304 4 2 3 305 633167129 633167431 1.330000e-145 527.0
44 TraesCS4A01G449300 chr1B 96.825 315 5 3 1 311 59029337 59029024 6.190000e-144 521.0
45 TraesCS4A01G449300 chr6A 98.350 303 3 1 1 303 597992889 597992589 1.030000e-146 531.0
46 TraesCS4A01G449300 chr6A 98.026 304 4 2 1 303 593643339 593643641 1.330000e-145 527.0
47 TraesCS4A01G449300 chr6A 81.609 174 18 8 671 839 603650060 603650224 1.220000e-26 132.0
48 TraesCS4A01G449300 chr6D 85.465 172 7 7 671 839 455575096 455574940 4.320000e-36 163.0
49 TraesCS4A01G449300 chr3B 83.815 173 10 10 671 840 824013085 824012928 1.210000e-31 148.0
50 TraesCS4A01G449300 chr5D 83.815 173 9 11 671 840 476939342 476939186 4.350000e-31 147.0
51 TraesCS4A01G449300 chr5D 91.262 103 5 3 671 770 482316775 482316876 2.620000e-28 137.0
52 TraesCS4A01G449300 chr5B 82.353 170 11 15 673 839 531655730 531655883 4.380000e-26 130.0
53 TraesCS4A01G449300 chr2A 81.977 172 12 9 671 839 349276113 349276268 1.580000e-25 128.0
54 TraesCS4A01G449300 chr7B 83.333 144 12 8 674 814 120723054 120723188 7.340000e-24 122.0
55 TraesCS4A01G449300 chr5A 80.233 172 10 7 671 839 280498963 280499113 2.050000e-19 108.0
56 TraesCS4A01G449300 chr5A 87.037 54 1 1 791 844 650610829 650610876 7.550000e-04 56.5
57 TraesCS4A01G449300 chr1A 88.679 53 0 1 787 839 326009263 326009217 5.830000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G449300 chr4A 715506189 715511582 5393 False 9961.00 9961 100.00000 1 5394 1 chr4A.!!$F4 5393
1 TraesCS4A01G449300 chr4A 715118542 715120399 1857 False 1509.00 1509 81.43000 1382 3246 1 chr4A.!!$F1 1864
2 TraesCS4A01G449300 chr4A 714418709 714422569 3860 False 789.25 2198 86.90175 1391 5314 4 chr4A.!!$F5 3923
3 TraesCS4A01G449300 chr7A 17441146 17443972 2826 True 2272.00 2272 81.44300 1364 4176 1 chr7A.!!$R1 2812
4 TraesCS4A01G449300 chr7A 17885237 17888015 2778 True 2108.00 2108 80.61500 1391 4146 1 chr7A.!!$R4 2755
5 TraesCS4A01G449300 chr7A 17771778 17774692 2914 True 2008.00 2008 79.38200 1385 4286 1 chr7A.!!$R3 2901
6 TraesCS4A01G449300 chr7A 18501239 18503473 2234 False 1781.00 1781 81.17800 1385 3627 1 chr7A.!!$F1 2242
7 TraesCS4A01G449300 chr7A 17808232 17813126 4894 True 1546.00 4464 86.40000 417 5389 4 chr7A.!!$R7 4972
8 TraesCS4A01G449300 chr7A 18042357 18047472 5115 True 1018.50 1905 82.91600 1001 4146 2 chr7A.!!$R8 3145
9 TraesCS4A01G449300 chr7A 18127170 18129886 2716 True 897.00 981 80.16550 2672 5389 2 chr7A.!!$R9 2717
10 TraesCS4A01G449300 chrUn 294163402 294166170 2768 False 2060.00 2060 80.37300 1391 4134 1 chrUn.!!$F2 2743
11 TraesCS4A01G449300 chrUn 278346542 278349865 3323 False 1092.50 2074 86.78650 1045 4146 2 chrUn.!!$F3 3101
12 TraesCS4A01G449300 chrUn 50616756 50619741 2985 True 976.50 2800 91.83400 2424 5320 4 chrUn.!!$R2 2896
13 TraesCS4A01G449300 chrUn 467579728 467580419 691 False 317.50 464 85.73000 485 1304 2 chrUn.!!$F4 819
14 TraesCS4A01G449300 chr6B 208175886 208178580 2694 False 2028.00 2028 80.51600 1386 4061 1 chr6B.!!$F1 2675
15 TraesCS4A01G449300 chr3D 23631489 23632020 531 True 588.00 588 86.58300 4823 5377 1 chr3D.!!$R1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.036388 ATACAAGGCACCAGACACGG 60.036 55.000 0.00 0.00 0.00 4.94 F
344 345 0.107214 GGATCCTGAATCGGGCACAA 60.107 55.000 3.84 0.00 34.99 3.33 F
365 366 0.110486 GTGAATGGGGTCACACCAGT 59.890 55.000 4.28 0.00 46.00 4.00 F
1340 3362 0.249699 CTGTATGTGGCCGCGGAATA 60.250 55.000 33.48 17.08 0.00 1.75 F
1482 3505 0.690762 TTCTACTCAAGGTGTGGGCC 59.309 55.000 0.00 0.00 0.00 5.80 F
1649 3672 1.490490 AGTTGAGGAAGTGAGCACCAA 59.510 47.619 0.00 0.00 0.00 3.67 F
3397 5429 1.376086 CACATGGTCTGGACTGGCA 59.624 57.895 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1208 2926 0.746659 GCAACAAGCTGGTGTTCCTT 59.253 50.000 0.00 0.0 39.73 3.36 R
1646 3669 1.263217 GGTTGTAGCGTGTGTTCTTGG 59.737 52.381 0.00 0.0 0.00 3.61 R
1649 3672 1.411246 TCAGGTTGTAGCGTGTGTTCT 59.589 47.619 0.00 0.0 0.00 3.01 R
3006 5035 1.638070 TGGGCATCATGTAGGTCCAAA 59.362 47.619 5.16 0.0 0.00 3.28 R
3378 5410 1.377725 GCCAGTCCAGACCATGTGG 60.378 63.158 0.00 0.0 42.17 4.17 R
3550 5586 1.344114 CTTTTGCTTGCTTGCCCCTAA 59.656 47.619 0.00 0.0 0.00 2.69 R
4530 6728 0.984230 TCAGCAGGGGTAGAAACAGG 59.016 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 9.594478 ACAAATTAAACAGAAAACAGGTTTAGG 57.406 29.630 0.00 0.00 38.00 2.69
64 65 9.040939 CAAATTAAACAGAAAACAGGTTTAGGG 57.959 33.333 0.00 0.00 38.00 3.53
65 66 6.718522 TTAAACAGAAAACAGGTTTAGGGG 57.281 37.500 0.00 0.00 38.00 4.79
66 67 3.238788 ACAGAAAACAGGTTTAGGGGG 57.761 47.619 0.00 0.00 31.63 5.40
87 88 1.471287 GGCTAAAACCCTAAACCTGCG 59.529 52.381 0.00 0.00 0.00 5.18
88 89 1.471287 GCTAAAACCCTAAACCTGCGG 59.529 52.381 0.00 0.00 0.00 5.69
89 90 1.471287 CTAAAACCCTAAACCTGCGGC 59.529 52.381 0.00 0.00 0.00 6.53
90 91 1.520600 AAAACCCTAAACCTGCGGCG 61.521 55.000 0.51 0.51 0.00 6.46
91 92 2.685804 AAACCCTAAACCTGCGGCGT 62.686 55.000 9.37 0.00 0.00 5.68
92 93 2.818274 CCCTAAACCTGCGGCGTC 60.818 66.667 9.37 0.91 0.00 5.19
93 94 2.818274 CCTAAACCTGCGGCGTCC 60.818 66.667 9.37 0.00 0.00 4.79
94 95 2.264794 CTAAACCTGCGGCGTCCT 59.735 61.111 9.37 0.00 0.00 3.85
95 96 1.375523 CTAAACCTGCGGCGTCCTT 60.376 57.895 9.37 0.00 0.00 3.36
96 97 0.953960 CTAAACCTGCGGCGTCCTTT 60.954 55.000 9.37 4.12 0.00 3.11
97 98 0.321021 TAAACCTGCGGCGTCCTTTA 59.679 50.000 9.37 3.14 0.00 1.85
98 99 0.953960 AAACCTGCGGCGTCCTTTAG 60.954 55.000 9.37 0.00 0.00 1.85
99 100 2.108278 AACCTGCGGCGTCCTTTAGT 62.108 55.000 9.37 0.00 0.00 2.24
100 101 1.810030 CCTGCGGCGTCCTTTAGTC 60.810 63.158 9.37 0.00 0.00 2.59
101 102 2.126228 TGCGGCGTCCTTTAGTCG 60.126 61.111 9.37 0.00 0.00 4.18
105 106 2.126189 GCGTCCTTTAGTCGCGGT 60.126 61.111 6.13 0.00 40.51 5.68
106 107 1.735559 GCGTCCTTTAGTCGCGGTT 60.736 57.895 6.13 0.00 40.51 4.44
107 108 1.952266 GCGTCCTTTAGTCGCGGTTG 61.952 60.000 6.13 0.00 40.51 3.77
108 109 1.349259 CGTCCTTTAGTCGCGGTTGG 61.349 60.000 6.13 0.51 0.00 3.77
109 110 1.375013 TCCTTTAGTCGCGGTTGGC 60.375 57.895 6.13 0.00 38.69 4.52
110 111 2.396157 CCTTTAGTCGCGGTTGGCC 61.396 63.158 6.13 0.00 38.94 5.36
111 112 1.669760 CTTTAGTCGCGGTTGGCCA 60.670 57.895 0.00 0.00 38.94 5.36
112 113 1.635663 CTTTAGTCGCGGTTGGCCAG 61.636 60.000 5.11 0.00 38.94 4.85
113 114 2.102109 TTTAGTCGCGGTTGGCCAGA 62.102 55.000 5.11 0.00 38.94 3.86
114 115 2.102109 TTAGTCGCGGTTGGCCAGAA 62.102 55.000 5.11 0.00 38.94 3.02
115 116 2.501223 TAGTCGCGGTTGGCCAGAAG 62.501 60.000 5.11 1.86 38.94 2.85
116 117 3.621805 TCGCGGTTGGCCAGAAGA 61.622 61.111 5.11 0.00 38.94 2.87
117 118 2.668212 CGCGGTTGGCCAGAAGAA 60.668 61.111 5.11 0.00 38.94 2.52
118 119 2.954611 GCGGTTGGCCAGAAGAAC 59.045 61.111 5.11 0.00 34.80 3.01
119 120 2.626780 GCGGTTGGCCAGAAGAACC 61.627 63.158 12.82 12.82 36.55 3.62
120 121 3.668386 GGTTGGCCAGAAGAACCG 58.332 61.111 5.11 0.00 30.33 4.44
121 122 2.626780 GGTTGGCCAGAAGAACCGC 61.627 63.158 5.11 0.00 30.33 5.68
122 123 2.668212 TTGGCCAGAAGAACCGCG 60.668 61.111 5.11 0.00 0.00 6.46
123 124 3.171828 TTGGCCAGAAGAACCGCGA 62.172 57.895 8.23 0.00 0.00 5.87
124 125 3.119096 GGCCAGAAGAACCGCGAC 61.119 66.667 8.23 0.00 0.00 5.19
125 126 2.048127 GCCAGAAGAACCGCGACT 60.048 61.111 8.23 0.30 0.00 4.18
126 127 1.214589 GCCAGAAGAACCGCGACTA 59.785 57.895 8.23 0.00 0.00 2.59
127 128 0.389426 GCCAGAAGAACCGCGACTAA 60.389 55.000 8.23 0.00 0.00 2.24
128 129 1.938016 GCCAGAAGAACCGCGACTAAA 60.938 52.381 8.23 0.00 0.00 1.85
129 130 1.993370 CCAGAAGAACCGCGACTAAAG 59.007 52.381 8.23 0.00 0.00 1.85
130 131 1.993370 CAGAAGAACCGCGACTAAAGG 59.007 52.381 8.23 0.00 0.00 3.11
131 132 1.617357 AGAAGAACCGCGACTAAAGGT 59.383 47.619 8.23 0.00 40.50 3.50
132 133 1.991264 GAAGAACCGCGACTAAAGGTC 59.009 52.381 8.23 0.00 37.26 3.85
133 134 0.245813 AGAACCGCGACTAAAGGTCC 59.754 55.000 8.23 0.00 41.64 4.46
134 135 0.245813 GAACCGCGACTAAAGGTCCT 59.754 55.000 8.23 0.00 41.64 3.85
135 136 0.245813 AACCGCGACTAAAGGTCCTC 59.754 55.000 8.23 0.00 41.64 3.71
136 137 1.141234 CCGCGACTAAAGGTCCTCC 59.859 63.158 8.23 0.00 41.64 4.30
137 138 1.226603 CGCGACTAAAGGTCCTCCG 60.227 63.158 0.00 0.00 41.64 4.63
138 139 1.518792 GCGACTAAAGGTCCTCCGC 60.519 63.158 0.00 0.00 41.64 5.54
139 140 1.141234 CGACTAAAGGTCCTCCGCC 59.859 63.158 0.00 0.00 41.64 6.13
140 141 1.521141 GACTAAAGGTCCTCCGCCC 59.479 63.158 0.00 0.00 38.93 6.13
141 142 1.969200 GACTAAAGGTCCTCCGCCCC 61.969 65.000 0.00 0.00 38.93 5.80
142 143 3.078836 TAAAGGTCCTCCGCCCCG 61.079 66.667 0.00 0.00 39.05 5.73
143 144 3.605412 TAAAGGTCCTCCGCCCCGA 62.605 63.158 0.00 0.00 39.05 5.14
175 176 4.636435 CCACGTGGACGGGCCTTT 62.636 66.667 31.31 0.00 42.34 3.11
176 177 2.344500 CACGTGGACGGGCCTTTA 59.656 61.111 7.95 0.00 44.95 1.85
177 178 1.740296 CACGTGGACGGGCCTTTAG 60.740 63.158 7.95 0.00 44.95 1.85
178 179 2.212110 ACGTGGACGGGCCTTTAGT 61.212 57.895 0.84 0.00 44.95 2.24
179 180 1.447314 CGTGGACGGGCCTTTAGTC 60.447 63.158 0.84 7.66 37.63 2.59
180 181 1.447314 GTGGACGGGCCTTTAGTCG 60.447 63.158 0.84 0.00 37.63 4.18
181 182 2.510918 GGACGGGCCTTTAGTCGC 60.511 66.667 0.84 0.00 35.87 5.19
182 183 2.884207 GACGGGCCTTTAGTCGCG 60.884 66.667 0.84 0.00 43.02 5.87
183 184 4.446413 ACGGGCCTTTAGTCGCGG 62.446 66.667 6.13 0.00 41.92 6.46
184 185 4.446413 CGGGCCTTTAGTCGCGGT 62.446 66.667 6.13 0.00 35.43 5.68
185 186 2.046604 GGGCCTTTAGTCGCGGTT 60.047 61.111 6.13 0.00 0.00 4.44
186 187 2.104859 GGGCCTTTAGTCGCGGTTC 61.105 63.158 6.13 0.00 0.00 3.62
187 188 1.079336 GGCCTTTAGTCGCGGTTCT 60.079 57.895 6.13 5.42 0.00 3.01
188 189 0.672711 GGCCTTTAGTCGCGGTTCTT 60.673 55.000 6.13 0.00 0.00 2.52
189 190 1.404583 GGCCTTTAGTCGCGGTTCTTA 60.405 52.381 6.13 0.00 0.00 2.10
190 191 2.340337 GCCTTTAGTCGCGGTTCTTAA 58.660 47.619 6.13 2.46 0.00 1.85
191 192 2.347755 GCCTTTAGTCGCGGTTCTTAAG 59.652 50.000 6.13 11.57 0.00 1.85
192 193 2.347755 CCTTTAGTCGCGGTTCTTAAGC 59.652 50.000 6.13 0.00 0.00 3.09
193 194 2.728690 TTAGTCGCGGTTCTTAAGCA 57.271 45.000 6.13 0.00 0.00 3.91
194 195 2.728690 TAGTCGCGGTTCTTAAGCAA 57.271 45.000 6.13 0.00 0.00 3.91
195 196 1.145803 AGTCGCGGTTCTTAAGCAAC 58.854 50.000 6.13 3.71 0.00 4.17
196 197 0.165295 GTCGCGGTTCTTAAGCAACC 59.835 55.000 19.09 19.09 40.12 3.77
200 201 2.535588 GGTTCTTAAGCAACCGCGA 58.464 52.632 8.23 0.00 45.49 5.87
201 202 0.165295 GGTTCTTAAGCAACCGCGAC 59.835 55.000 8.23 0.00 45.49 5.19
202 203 1.145803 GTTCTTAAGCAACCGCGACT 58.854 50.000 8.23 0.00 45.49 4.18
203 204 2.331194 GTTCTTAAGCAACCGCGACTA 58.669 47.619 8.23 0.00 45.49 2.59
204 205 2.728690 TCTTAAGCAACCGCGACTAA 57.271 45.000 8.23 0.00 45.49 2.24
205 206 3.029320 TCTTAAGCAACCGCGACTAAA 57.971 42.857 8.23 0.00 45.49 1.85
206 207 2.991190 TCTTAAGCAACCGCGACTAAAG 59.009 45.455 8.23 1.88 45.49 1.85
207 208 2.728690 TAAGCAACCGCGACTAAAGA 57.271 45.000 8.23 0.00 45.49 2.52
208 209 1.429463 AAGCAACCGCGACTAAAGAG 58.571 50.000 8.23 0.00 45.49 2.85
209 210 0.389948 AGCAACCGCGACTAAAGAGG 60.390 55.000 8.23 0.00 45.49 3.69
210 211 1.359459 GCAACCGCGACTAAAGAGGG 61.359 60.000 8.23 0.00 0.00 4.30
211 212 0.739813 CAACCGCGACTAAAGAGGGG 60.740 60.000 8.23 10.10 42.75 4.79
212 213 1.896122 AACCGCGACTAAAGAGGGGG 61.896 60.000 8.23 10.48 41.58 5.40
229 230 4.468689 GGGCCTTTAGTCGCGCCT 62.469 66.667 0.84 0.00 41.35 5.52
230 231 2.497770 GGCCTTTAGTCGCGCCTA 59.502 61.111 0.00 0.00 38.41 3.93
231 232 1.069258 GGCCTTTAGTCGCGCCTAT 59.931 57.895 0.00 0.00 38.41 2.57
232 233 0.532196 GGCCTTTAGTCGCGCCTATT 60.532 55.000 0.00 0.00 38.41 1.73
233 234 1.296727 GCCTTTAGTCGCGCCTATTT 58.703 50.000 0.00 0.00 0.00 1.40
234 235 1.003866 GCCTTTAGTCGCGCCTATTTG 60.004 52.381 0.00 0.00 0.00 2.32
235 236 1.597663 CCTTTAGTCGCGCCTATTTGG 59.402 52.381 0.00 0.00 39.35 3.28
236 237 2.277084 CTTTAGTCGCGCCTATTTGGT 58.723 47.619 0.00 0.00 38.35 3.67
237 238 1.930567 TTAGTCGCGCCTATTTGGTC 58.069 50.000 0.00 0.00 38.35 4.02
238 239 0.248743 TAGTCGCGCCTATTTGGTCG 60.249 55.000 0.00 0.00 38.35 4.79
241 242 3.937062 GCGCCTATTTGGTCGCGG 61.937 66.667 6.13 0.00 45.57 6.46
242 243 2.510691 CGCCTATTTGGTCGCGGT 60.511 61.111 6.13 0.00 40.91 5.68
243 244 2.104253 CGCCTATTTGGTCGCGGTT 61.104 57.895 6.13 0.00 40.91 4.44
244 245 1.427819 GCCTATTTGGTCGCGGTTG 59.572 57.895 6.13 0.00 38.35 3.77
245 246 1.427819 CCTATTTGGTCGCGGTTGC 59.572 57.895 6.13 0.00 37.91 4.17
263 264 2.403586 GCAACCGCGACTAATGGC 59.596 61.111 8.23 0.00 0.00 4.40
264 265 2.395360 GCAACCGCGACTAATGGCA 61.395 57.895 8.23 0.00 0.00 4.92
265 266 1.917782 GCAACCGCGACTAATGGCAA 61.918 55.000 8.23 0.00 0.00 4.52
266 267 0.732571 CAACCGCGACTAATGGCAAT 59.267 50.000 8.23 0.00 0.00 3.56
267 268 1.132262 CAACCGCGACTAATGGCAATT 59.868 47.619 8.23 0.00 0.00 2.32
268 269 0.732571 ACCGCGACTAATGGCAATTG 59.267 50.000 8.23 0.00 0.00 2.32
269 270 0.592247 CCGCGACTAATGGCAATTGC 60.592 55.000 22.47 22.47 41.14 3.56
270 271 0.925267 CGCGACTAATGGCAATTGCG 60.925 55.000 23.48 12.09 43.26 4.85
271 272 0.376852 GCGACTAATGGCAATTGCGA 59.623 50.000 23.48 20.74 43.26 5.10
272 273 1.202132 GCGACTAATGGCAATTGCGAA 60.202 47.619 23.48 14.96 43.26 4.70
273 274 2.440501 CGACTAATGGCAATTGCGAAC 58.559 47.619 23.48 11.00 43.26 3.95
274 275 2.791158 CGACTAATGGCAATTGCGAACC 60.791 50.000 23.48 10.64 43.26 3.62
275 276 1.132262 ACTAATGGCAATTGCGAACCG 59.868 47.619 23.48 13.86 43.26 4.44
285 286 4.084888 GCGAACCGCGACCAAAGG 62.085 66.667 8.23 0.00 44.55 3.11
286 287 4.084888 CGAACCGCGACCAAAGGC 62.085 66.667 8.23 0.00 44.57 4.35
287 288 3.733960 GAACCGCGACCAAAGGCC 61.734 66.667 8.23 0.00 0.00 5.19
291 292 2.983592 CGCGACCAAAGGCCCTTT 60.984 61.111 1.93 1.93 33.58 3.11
292 293 2.561037 CGCGACCAAAGGCCCTTTT 61.561 57.895 5.84 0.00 30.60 2.27
293 294 1.289066 GCGACCAAAGGCCCTTTTC 59.711 57.895 5.84 1.71 30.60 2.29
294 295 1.964448 CGACCAAAGGCCCTTTTCC 59.036 57.895 5.84 0.00 30.60 3.13
295 296 1.532604 CGACCAAAGGCCCTTTTCCC 61.533 60.000 5.84 0.00 30.60 3.97
296 297 0.471022 GACCAAAGGCCCTTTTCCCA 60.471 55.000 5.84 0.00 30.60 4.37
297 298 0.762842 ACCAAAGGCCCTTTTCCCAC 60.763 55.000 5.84 0.00 30.60 4.61
298 299 1.480212 CCAAAGGCCCTTTTCCCACC 61.480 60.000 5.84 0.00 30.60 4.61
299 300 0.762461 CAAAGGCCCTTTTCCCACCA 60.762 55.000 5.84 0.00 30.60 4.17
300 301 0.471780 AAAGGCCCTTTTCCCACCAG 60.472 55.000 1.93 0.00 28.27 4.00
301 302 1.664956 AAGGCCCTTTTCCCACCAGT 61.665 55.000 0.00 0.00 0.00 4.00
302 303 1.908299 GGCCCTTTTCCCACCAGTG 60.908 63.158 0.00 0.00 0.00 3.66
303 304 1.152546 GCCCTTTTCCCACCAGTGT 60.153 57.895 0.00 0.00 0.00 3.55
304 305 1.463553 GCCCTTTTCCCACCAGTGTG 61.464 60.000 0.00 0.00 42.39 3.82
323 324 1.739067 GGATACAAGGCACCAGACAC 58.261 55.000 0.00 0.00 0.00 3.67
324 325 1.359848 GATACAAGGCACCAGACACG 58.640 55.000 0.00 0.00 0.00 4.49
325 326 0.036388 ATACAAGGCACCAGACACGG 60.036 55.000 0.00 0.00 0.00 4.94
326 327 2.107041 TACAAGGCACCAGACACGGG 62.107 60.000 0.00 0.00 0.00 5.28
327 328 2.847234 AAGGCACCAGACACGGGA 60.847 61.111 0.00 0.00 0.00 5.14
328 329 2.224159 AAGGCACCAGACACGGGAT 61.224 57.895 0.00 0.00 0.00 3.85
329 330 2.125106 GGCACCAGACACGGGATC 60.125 66.667 0.00 0.00 0.00 3.36
330 331 2.125106 GCACCAGACACGGGATCC 60.125 66.667 1.92 1.92 0.00 3.36
331 332 2.660064 GCACCAGACACGGGATCCT 61.660 63.158 12.58 0.00 0.00 3.24
332 333 1.219124 CACCAGACACGGGATCCTG 59.781 63.158 19.66 19.66 0.00 3.86
333 334 1.078528 ACCAGACACGGGATCCTGA 59.921 57.895 27.90 0.00 0.00 3.86
334 335 0.544357 ACCAGACACGGGATCCTGAA 60.544 55.000 27.90 0.00 0.00 3.02
335 336 0.833287 CCAGACACGGGATCCTGAAT 59.167 55.000 27.90 14.04 0.00 2.57
336 337 1.202580 CCAGACACGGGATCCTGAATC 60.203 57.143 27.90 21.25 0.00 2.52
337 338 0.747255 AGACACGGGATCCTGAATCG 59.253 55.000 27.90 16.23 34.99 3.34
338 339 0.249489 GACACGGGATCCTGAATCGG 60.249 60.000 27.90 12.42 34.99 4.18
339 340 1.069765 CACGGGATCCTGAATCGGG 59.930 63.158 27.90 11.52 34.99 5.14
340 341 2.031163 CGGGATCCTGAATCGGGC 59.969 66.667 16.28 0.00 34.99 6.13
341 342 2.807107 CGGGATCCTGAATCGGGCA 61.807 63.158 16.28 0.00 34.99 5.36
342 343 1.227973 GGGATCCTGAATCGGGCAC 60.228 63.158 12.58 0.00 34.99 5.01
343 344 1.526887 GGATCCTGAATCGGGCACA 59.473 57.895 3.84 0.00 34.99 4.57
344 345 0.107214 GGATCCTGAATCGGGCACAA 60.107 55.000 3.84 0.00 34.99 3.33
345 346 1.017387 GATCCTGAATCGGGCACAAC 58.983 55.000 2.50 0.00 0.00 3.32
346 347 0.744414 ATCCTGAATCGGGCACAACG 60.744 55.000 2.50 0.00 0.00 4.10
347 348 1.671054 CCTGAATCGGGCACAACGT 60.671 57.895 0.00 0.00 0.00 3.99
348 349 1.497278 CTGAATCGGGCACAACGTG 59.503 57.895 0.00 0.00 36.51 4.49
349 350 0.948623 CTGAATCGGGCACAACGTGA 60.949 55.000 0.00 0.00 35.23 4.35
350 351 0.533085 TGAATCGGGCACAACGTGAA 60.533 50.000 0.00 0.00 35.23 3.18
351 352 0.802494 GAATCGGGCACAACGTGAAT 59.198 50.000 0.00 0.00 35.23 2.57
352 353 0.521291 AATCGGGCACAACGTGAATG 59.479 50.000 0.00 0.00 35.23 2.67
353 354 1.305219 ATCGGGCACAACGTGAATGG 61.305 55.000 0.00 0.00 35.23 3.16
354 355 2.961768 GGGCACAACGTGAATGGG 59.038 61.111 0.00 0.00 35.23 4.00
355 356 2.635443 GGGCACAACGTGAATGGGG 61.635 63.158 0.00 0.00 35.23 4.96
356 357 1.901464 GGCACAACGTGAATGGGGT 60.901 57.895 0.00 0.00 35.23 4.95
357 358 1.579429 GCACAACGTGAATGGGGTC 59.421 57.895 0.00 0.00 35.23 4.46
358 359 1.169661 GCACAACGTGAATGGGGTCA 61.170 55.000 0.00 0.00 35.23 4.02
359 360 0.591170 CACAACGTGAATGGGGTCAC 59.409 55.000 0.00 0.00 43.75 3.67
360 361 0.181587 ACAACGTGAATGGGGTCACA 59.818 50.000 6.19 0.00 46.90 3.58
361 362 0.591170 CAACGTGAATGGGGTCACAC 59.409 55.000 6.19 0.00 46.90 3.82
362 363 0.536460 AACGTGAATGGGGTCACACC 60.536 55.000 0.00 0.00 46.90 4.16
363 364 1.072332 CGTGAATGGGGTCACACCA 59.928 57.895 0.00 0.00 46.90 4.17
364 365 0.955428 CGTGAATGGGGTCACACCAG 60.955 60.000 4.28 0.00 46.90 4.00
365 366 0.110486 GTGAATGGGGTCACACCAGT 59.890 55.000 4.28 0.00 46.00 4.00
366 367 2.153266 GTGAATGGGGTCACACCAGTG 61.153 57.143 2.14 0.00 46.00 3.66
367 368 1.228552 AATGGGGTCACACCAGTGC 60.229 57.895 4.28 0.00 45.49 4.40
368 369 2.713531 AATGGGGTCACACCAGTGCC 62.714 60.000 4.28 0.00 45.49 5.01
372 373 4.927782 GTCACACCAGTGCCGCCA 62.928 66.667 0.00 0.00 45.49 5.69
373 374 3.952508 TCACACCAGTGCCGCCAT 61.953 61.111 0.00 0.00 45.49 4.40
374 375 3.434319 CACACCAGTGCCGCCATC 61.434 66.667 0.00 0.00 39.21 3.51
375 376 4.722700 ACACCAGTGCCGCCATCC 62.723 66.667 0.00 0.00 0.00 3.51
408 409 4.988598 CGCTGCTCCACCAACCGT 62.989 66.667 0.00 0.00 0.00 4.83
409 410 3.357079 GCTGCTCCACCAACCGTG 61.357 66.667 0.00 0.00 42.62 4.94
410 411 2.425592 CTGCTCCACCAACCGTGA 59.574 61.111 0.00 0.00 46.20 4.35
411 412 1.961277 CTGCTCCACCAACCGTGAC 60.961 63.158 0.00 0.00 46.20 3.67
412 413 2.383245 CTGCTCCACCAACCGTGACT 62.383 60.000 0.00 0.00 46.20 3.41
413 414 1.668151 GCTCCACCAACCGTGACTC 60.668 63.158 0.00 0.00 46.20 3.36
414 415 2.050269 CTCCACCAACCGTGACTCT 58.950 57.895 0.00 0.00 46.20 3.24
415 416 1.254026 CTCCACCAACCGTGACTCTA 58.746 55.000 0.00 0.00 46.20 2.43
426 427 2.417379 CCGTGACTCTAGTGATGGTTGG 60.417 54.545 0.00 0.00 34.25 3.77
428 429 3.442625 CGTGACTCTAGTGATGGTTGGTA 59.557 47.826 0.00 0.00 0.00 3.25
429 430 4.438880 CGTGACTCTAGTGATGGTTGGTAG 60.439 50.000 0.00 0.00 0.00 3.18
430 431 4.463186 GTGACTCTAGTGATGGTTGGTAGT 59.537 45.833 0.00 0.00 0.00 2.73
431 432 5.651139 GTGACTCTAGTGATGGTTGGTAGTA 59.349 44.000 0.00 0.00 0.00 1.82
434 435 6.966751 ACTCTAGTGATGGTTGGTAGTAGTA 58.033 40.000 0.00 0.00 0.00 1.82
445 446 1.406887 GGTAGTAGTACCCGTCGGTGA 60.407 57.143 15.03 0.00 44.40 4.02
448 449 2.019984 AGTAGTACCCGTCGGTGATTC 58.980 52.381 11.06 0.00 44.40 2.52
449 450 1.066152 GTAGTACCCGTCGGTGATTCC 59.934 57.143 11.06 0.00 44.40 3.01
450 451 0.324091 AGTACCCGTCGGTGATTCCT 60.324 55.000 11.06 0.00 44.40 3.36
462 463 3.922240 CGGTGATTCCTCATTTGCTTTTG 59.078 43.478 0.00 0.00 32.98 2.44
463 464 3.681417 GGTGATTCCTCATTTGCTTTTGC 59.319 43.478 0.00 0.00 38.79 3.68
497 498 2.010817 GCACGTCAAAAAGCTGCGG 61.011 57.895 0.00 0.00 0.00 5.69
504 505 1.885887 TCAAAAAGCTGCGGTTGCTAT 59.114 42.857 0.00 0.00 43.34 2.97
544 545 4.752101 AGTGCTTGCTCACTACTTTTACTG 59.248 41.667 5.30 0.00 44.77 2.74
602 609 3.375299 GCTTGCTAGTACCAAGTGGATTG 59.625 47.826 3.83 0.00 41.27 2.67
609 616 0.396435 ACCAAGTGGATTGTGCTCGA 59.604 50.000 3.83 0.00 37.17 4.04
612 619 3.118261 ACCAAGTGGATTGTGCTCGATAT 60.118 43.478 3.83 0.00 37.17 1.63
615 622 5.349817 CCAAGTGGATTGTGCTCGATATATC 59.650 44.000 2.34 2.34 37.17 1.63
628 635 8.976471 GTGCTCGATATATCAGATCCAATAATG 58.024 37.037 13.11 0.00 0.00 1.90
632 639 8.864087 TCGATATATCAGATCCAATAATGAGGG 58.136 37.037 13.11 0.00 0.00 4.30
637 644 4.915809 TCAGATCCAATAATGAGGGTCCAT 59.084 41.667 0.00 0.00 35.57 3.41
649 656 3.181389 TGAGGGTCCATATTAGCCCCATA 60.181 47.826 0.00 0.00 41.99 2.74
651 658 3.080619 AGGGTCCATATTAGCCCCATAGA 59.919 47.826 0.00 0.00 41.99 1.98
655 662 5.044846 GGTCCATATTAGCCCCATAGAATGT 60.045 44.000 0.00 0.00 0.00 2.71
656 663 5.882557 GTCCATATTAGCCCCATAGAATGTG 59.117 44.000 0.00 0.00 0.00 3.21
663 672 1.643292 CCATAGAATGTGCGTGCCG 59.357 57.895 0.00 0.00 0.00 5.69
667 676 4.759096 GAATGTGCGTGCCGTGCC 62.759 66.667 0.00 0.00 0.00 5.01
678 687 3.697747 CCGTGCCACCCGTTCCTA 61.698 66.667 0.00 0.00 0.00 2.94
679 688 2.344500 CGTGCCACCCGTTCCTAA 59.656 61.111 0.00 0.00 0.00 2.69
680 689 1.301874 CGTGCCACCCGTTCCTAAA 60.302 57.895 0.00 0.00 0.00 1.85
681 690 0.675522 CGTGCCACCCGTTCCTAAAT 60.676 55.000 0.00 0.00 0.00 1.40
682 691 1.405797 CGTGCCACCCGTTCCTAAATA 60.406 52.381 0.00 0.00 0.00 1.40
683 692 2.743838 CGTGCCACCCGTTCCTAAATAT 60.744 50.000 0.00 0.00 0.00 1.28
685 694 3.697542 GTGCCACCCGTTCCTAAATATTT 59.302 43.478 5.89 5.89 0.00 1.40
688 697 4.158949 GCCACCCGTTCCTAAATATTTGTT 59.841 41.667 11.05 0.00 0.00 2.83
689 698 5.336929 GCCACCCGTTCCTAAATATTTGTTT 60.337 40.000 11.05 0.00 0.00 2.83
691 700 7.156000 CCACCCGTTCCTAAATATTTGTTTTT 58.844 34.615 11.05 0.00 0.00 1.94
692 701 7.329962 CCACCCGTTCCTAAATATTTGTTTTTC 59.670 37.037 11.05 0.00 0.00 2.29
694 703 9.299465 ACCCGTTCCTAAATATTTGTTTTTCTA 57.701 29.630 11.05 0.00 0.00 2.10
695 704 9.783256 CCCGTTCCTAAATATTTGTTTTTCTAG 57.217 33.333 11.05 0.00 0.00 2.43
714 723 8.964476 TTTCTAGAGATTTTCAACAAGTGACT 57.036 30.769 0.00 0.00 35.39 3.41
720 729 9.778741 AGAGATTTTCAACAAGTGACTATACAA 57.221 29.630 0.00 0.00 35.39 2.41
722 731 8.507249 AGATTTTCAACAAGTGACTATACAAGC 58.493 33.333 0.00 0.00 35.39 4.01
723 732 7.561021 TTTTCAACAAGTGACTATACAAGCA 57.439 32.000 0.00 0.00 35.39 3.91
724 733 7.561021 TTTCAACAAGTGACTATACAAGCAA 57.439 32.000 0.00 0.00 35.39 3.91
725 734 7.561021 TTCAACAAGTGACTATACAAGCAAA 57.439 32.000 0.00 0.00 35.39 3.68
726 735 7.561021 TCAACAAGTGACTATACAAGCAAAA 57.439 32.000 0.00 0.00 0.00 2.44
727 736 8.165239 TCAACAAGTGACTATACAAGCAAAAT 57.835 30.769 0.00 0.00 0.00 1.82
728 737 8.075574 TCAACAAGTGACTATACAAGCAAAATG 58.924 33.333 0.00 0.00 0.00 2.32
729 738 7.744087 ACAAGTGACTATACAAGCAAAATGA 57.256 32.000 0.00 0.00 0.00 2.57
730 739 7.810658 ACAAGTGACTATACAAGCAAAATGAG 58.189 34.615 0.00 0.00 0.00 2.90
731 740 7.445402 ACAAGTGACTATACAAGCAAAATGAGT 59.555 33.333 0.00 0.00 0.00 3.41
732 741 7.369803 AGTGACTATACAAGCAAAATGAGTG 57.630 36.000 0.00 0.00 0.00 3.51
733 742 7.161404 AGTGACTATACAAGCAAAATGAGTGA 58.839 34.615 0.00 0.00 0.00 3.41
734 743 7.661437 AGTGACTATACAAGCAAAATGAGTGAA 59.339 33.333 0.00 0.00 0.00 3.18
735 744 8.454106 GTGACTATACAAGCAAAATGAGTGAAT 58.546 33.333 0.00 0.00 0.00 2.57
736 745 8.668353 TGACTATACAAGCAAAATGAGTGAATC 58.332 33.333 0.00 0.00 0.00 2.52
737 746 8.798859 ACTATACAAGCAAAATGAGTGAATCT 57.201 30.769 0.00 0.00 0.00 2.40
738 747 9.890629 ACTATACAAGCAAAATGAGTGAATCTA 57.109 29.630 0.00 0.00 0.00 1.98
786 795 9.687210 ACATACGTATATTGTCATATTGTCGTT 57.313 29.630 7.96 0.00 32.95 3.85
788 797 9.902196 ATACGTATATTGTCATATTGTCGTTCA 57.098 29.630 6.21 0.00 32.95 3.18
789 798 8.812147 ACGTATATTGTCATATTGTCGTTCAT 57.188 30.769 0.00 0.00 29.75 2.57
790 799 9.256477 ACGTATATTGTCATATTGTCGTTCATT 57.744 29.630 0.00 0.00 29.75 2.57
796 805 9.859427 ATTGTCATATTGTCGTTCATTTCAAAT 57.141 25.926 0.00 0.00 0.00 2.32
797 806 8.672214 TGTCATATTGTCGTTCATTTCAAATG 57.328 30.769 3.46 3.46 0.00 2.32
798 807 8.296000 TGTCATATTGTCGTTCATTTCAAATGT 58.704 29.630 9.98 0.00 0.00 2.71
799 808 8.788813 GTCATATTGTCGTTCATTTCAAATGTC 58.211 33.333 9.98 4.41 0.00 3.06
800 809 8.729756 TCATATTGTCGTTCATTTCAAATGTCT 58.270 29.630 9.98 0.00 0.00 3.41
801 810 9.986833 CATATTGTCGTTCATTTCAAATGTCTA 57.013 29.630 9.98 0.00 0.00 2.59
803 812 7.722795 TTGTCGTTCATTTCAAATGTCTAGA 57.277 32.000 9.98 3.70 0.00 2.43
804 813 7.722795 TGTCGTTCATTTCAAATGTCTAGAA 57.277 32.000 9.98 0.00 0.00 2.10
805 814 8.148807 TGTCGTTCATTTCAAATGTCTAGAAA 57.851 30.769 9.98 0.00 35.92 2.52
806 815 8.282592 TGTCGTTCATTTCAAATGTCTAGAAAG 58.717 33.333 9.98 0.00 35.05 2.62
807 816 8.495949 GTCGTTCATTTCAAATGTCTAGAAAGA 58.504 33.333 9.98 2.21 35.05 2.52
830 839 9.813446 AAGACAAATACTACTATTTAGGAACGG 57.187 33.333 0.00 0.00 31.80 4.44
831 840 9.193806 AGACAAATACTACTATTTAGGAACGGA 57.806 33.333 0.00 0.00 31.80 4.69
832 841 9.460906 GACAAATACTACTATTTAGGAACGGAG 57.539 37.037 0.00 0.00 31.80 4.63
833 842 8.419442 ACAAATACTACTATTTAGGAACGGAGG 58.581 37.037 0.00 0.00 31.80 4.30
834 843 7.536159 AATACTACTATTTAGGAACGGAGGG 57.464 40.000 0.00 0.00 0.00 4.30
837 846 3.991683 ACTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
853 866 3.022607 GGAGTACAATAATCCCCGTCG 57.977 52.381 0.00 0.00 36.97 5.12
904 920 2.076863 GCTTTGCTACACCGAGTTCAT 58.923 47.619 0.00 0.00 0.00 2.57
920 944 5.746245 CGAGTTCATTTCTTACTCCTAGCTG 59.254 44.000 0.00 0.00 35.91 4.24
925 949 3.784701 TTCTTACTCCTAGCTGCTTCG 57.215 47.619 7.79 0.00 0.00 3.79
926 950 2.724454 TCTTACTCCTAGCTGCTTCGT 58.276 47.619 7.79 2.87 0.00 3.85
927 951 3.090037 TCTTACTCCTAGCTGCTTCGTT 58.910 45.455 7.79 0.00 0.00 3.85
928 952 3.128938 TCTTACTCCTAGCTGCTTCGTTC 59.871 47.826 7.79 0.00 0.00 3.95
929 953 1.551452 ACTCCTAGCTGCTTCGTTCT 58.449 50.000 7.79 0.00 0.00 3.01
930 954 1.896465 ACTCCTAGCTGCTTCGTTCTT 59.104 47.619 7.79 0.00 0.00 2.52
931 955 2.300437 ACTCCTAGCTGCTTCGTTCTTT 59.700 45.455 7.79 0.00 0.00 2.52
932 956 2.926838 CTCCTAGCTGCTTCGTTCTTTC 59.073 50.000 7.79 0.00 0.00 2.62
947 971 4.262079 CGTTCTTTCTACTCCTCAACACCT 60.262 45.833 0.00 0.00 0.00 4.00
955 979 2.222027 CTCCTCAACACCTCACCAAAC 58.778 52.381 0.00 0.00 0.00 2.93
962 986 0.947244 CACCTCACCAAACTGCTGTC 59.053 55.000 0.00 0.00 0.00 3.51
981 1005 4.718961 TGTCTGTGAGAGGATCATATCGA 58.281 43.478 0.00 0.00 40.92 3.59
982 1006 5.133221 TGTCTGTGAGAGGATCATATCGAA 58.867 41.667 0.00 0.00 40.92 3.71
984 1008 4.520874 TCTGTGAGAGGATCATATCGAACC 59.479 45.833 0.00 0.00 40.92 3.62
986 1010 2.820197 TGAGAGGATCATATCGAACCGG 59.180 50.000 0.00 0.00 41.44 5.28
987 1011 2.820787 GAGAGGATCATATCGAACCGGT 59.179 50.000 0.00 0.00 41.44 5.28
988 1012 2.820787 AGAGGATCATATCGAACCGGTC 59.179 50.000 8.04 0.00 41.44 4.79
990 1014 5.509927 GAGGATCATATCGAACCGGTCGG 62.510 56.522 20.97 7.97 42.52 4.79
1017 1041 2.252072 TAATGGCAGGGACGGTGCTC 62.252 60.000 0.00 0.00 40.97 4.26
1138 1181 4.218417 GGTATGTGTCCATGCACTTCTTTT 59.782 41.667 0.00 0.00 39.89 2.27
1174 2743 4.080526 ACGTAATTCCCACAGCCTCTTATT 60.081 41.667 0.00 0.00 0.00 1.40
1178 2747 1.564348 TCCCACAGCCTCTTATTTCCC 59.436 52.381 0.00 0.00 0.00 3.97
1183 2752 5.261216 CCACAGCCTCTTATTTCCCTTTTA 58.739 41.667 0.00 0.00 0.00 1.52
1191 2760 8.625651 GCCTCTTATTTCCCTTTTATTCTTCTC 58.374 37.037 0.00 0.00 0.00 2.87
1208 2926 6.918067 TCTTCTCTTAGTCCATCTTGTTGA 57.082 37.500 0.00 0.00 0.00 3.18
1217 3206 3.253432 GTCCATCTTGTTGAAGGAACACC 59.747 47.826 0.00 0.00 44.53 4.16
1218 3207 3.117701 TCCATCTTGTTGAAGGAACACCA 60.118 43.478 0.00 0.00 44.53 4.17
1309 3331 7.444299 AGATTGACACATTAAAACCAAGCATT 58.556 30.769 0.00 0.00 0.00 3.56
1332 3354 9.630098 CATTCATATAAATTTCTGTATGTGGCC 57.370 33.333 0.00 0.00 0.00 5.36
1340 3362 0.249699 CTGTATGTGGCCGCGGAATA 60.250 55.000 33.48 17.08 0.00 1.75
1377 3400 9.810545 TGTTATAACTTGAAGTTTCTTTTTGGG 57.189 29.630 16.49 0.00 39.51 4.12
1482 3505 0.690762 TTCTACTCAAGGTGTGGGCC 59.309 55.000 0.00 0.00 0.00 5.80
1646 3669 2.805099 CAAGAGTTGAGGAAGTGAGCAC 59.195 50.000 0.00 0.00 0.00 4.40
1649 3672 1.490490 AGTTGAGGAAGTGAGCACCAA 59.510 47.619 0.00 0.00 0.00 3.67
1692 3715 5.871396 TTGAGAAGAACCAAGTCACTAGT 57.129 39.130 0.00 0.00 0.00 2.57
2052 4079 2.392821 GTAGTGCGAGCAGATGATCTG 58.607 52.381 17.83 17.83 46.90 2.90
2082 4109 6.037281 GCTACCTTAGGAAAAAGCTACATGAC 59.963 42.308 4.77 0.00 0.00 3.06
2244 4271 6.214412 AGTGTGGTTTGGAATCTTCTAGATCT 59.786 38.462 0.00 0.00 32.89 2.75
2330 4357 6.258947 GCTAGGAAATGTAAGGAAGACATGAC 59.741 42.308 0.00 0.00 37.59 3.06
2339 4366 7.613022 ATGTAAGGAAGACATGACAAATGATGT 59.387 33.333 0.00 0.00 36.18 3.06
2447 4476 1.880027 CAAAGTGGTAACTGAGTGCCC 59.120 52.381 4.38 0.00 36.51 5.36
2598 4627 8.765517 AGCATATTTCCTGAGGATTTTGAAATT 58.234 29.630 0.04 0.00 37.04 1.82
2631 4660 4.517285 GTCTGGTTGAAAGATGGATAGCA 58.483 43.478 0.00 0.00 0.00 3.49
2738 4767 3.466836 TCCAGTCATCAAGTGTGAACAC 58.533 45.455 5.42 5.42 46.77 3.32
2895 4924 2.092267 AGCATATCATGGTGGTGAGCAA 60.092 45.455 0.00 0.00 39.92 3.91
2914 4943 5.422145 AGCAACCAAATAAAAGCATGGATC 58.578 37.500 0.00 0.00 36.75 3.36
3006 5035 5.665459 CCCGACTTCAAGATGATTAGAACT 58.335 41.667 0.00 0.00 0.00 3.01
3105 5134 3.499338 TGTCAATATCATTGGCCATCCC 58.501 45.455 6.09 0.00 0.00 3.85
3126 5155 5.104277 TCCCGGTGAAGGTTTATATGTTCAT 60.104 40.000 0.00 0.00 31.84 2.57
3145 5174 6.044754 TGTTCATAAGCTCCCAAGATCCATAT 59.955 38.462 0.00 0.00 0.00 1.78
3209 5238 7.439356 CAGTTATATCACATCACTACCAACTGG 59.561 40.741 0.00 0.00 36.90 4.00
3378 5410 9.994432 GATCGTATGGAATTTATGATGGATTTC 57.006 33.333 0.00 0.00 0.00 2.17
3397 5429 1.376086 CACATGGTCTGGACTGGCA 59.624 57.895 0.00 0.00 0.00 4.92
3633 5669 3.623060 TCCGCTCTCTTTATGTGAAATGC 59.377 43.478 0.00 0.00 0.00 3.56
3634 5670 3.624861 CCGCTCTCTTTATGTGAAATGCT 59.375 43.478 0.00 0.00 0.00 3.79
3644 5692 8.970020 TCTTTATGTGAAATGCTATTGGACAAT 58.030 29.630 2.80 2.80 34.93 2.71
3754 5814 1.106285 GTTTGGGGATCTGGTGCATC 58.894 55.000 0.00 0.00 0.00 3.91
3769 5829 3.366374 GGTGCATCTGGTGAAGCTTTTAC 60.366 47.826 0.00 3.17 37.74 2.01
3781 5841 5.412904 GTGAAGCTTTTACTATGGTCAAGCT 59.587 40.000 17.90 17.90 45.92 3.74
3867 5927 4.502105 TCTTGGTTATGGCTCTTATGCA 57.498 40.909 0.00 0.00 34.04 3.96
3882 5942 6.486253 TCTTATGCAGCAGAAAAACTAGTG 57.514 37.500 3.62 0.00 0.00 2.74
4069 6129 7.872113 AGGCTCAAGGAGATTTTTATTAGTG 57.128 36.000 0.00 0.00 0.00 2.74
4093 6153 0.034756 TGCTCAAGTTGCGAGGCTTA 59.965 50.000 0.00 0.00 0.00 3.09
4098 6158 1.873591 CAAGTTGCGAGGCTTAGTGTT 59.126 47.619 0.00 0.00 0.00 3.32
4101 6161 2.561419 AGTTGCGAGGCTTAGTGTTCTA 59.439 45.455 0.00 0.00 0.00 2.10
4291 6413 1.290324 GAGAGCGACAGGTCAGCAA 59.710 57.895 14.99 0.00 46.62 3.91
4295 6417 0.898320 AGCGACAGGTCAGCAATACT 59.102 50.000 14.99 0.00 33.71 2.12
4313 6454 6.264970 GCAATACTTACTAGCTACCAGTACCT 59.735 42.308 0.00 0.00 0.00 3.08
4329 6477 4.807834 CAGTACCTGCTGAGATGTATGTTG 59.192 45.833 0.00 0.00 38.70 3.33
4346 6494 5.910637 ATGTTGCACATGTTTTGATTCAC 57.089 34.783 0.00 0.00 37.45 3.18
4363 6512 7.566760 TGATTCACTAATCTCTCTCTGTCTC 57.433 40.000 0.00 0.00 41.83 3.36
4367 6516 4.272504 CACTAATCTCTCTCTGTCTCGTCC 59.727 50.000 0.00 0.00 0.00 4.79
4472 6669 0.678366 GGAGTCTCTCGCTCAGGTCA 60.678 60.000 0.00 0.00 34.83 4.02
4530 6728 5.547465 TGTAGATCGAATCTCTCTCTCTCC 58.453 45.833 0.00 0.00 40.76 3.71
4533 6731 3.207265 TCGAATCTCTCTCTCTCCCTG 57.793 52.381 0.00 0.00 0.00 4.45
4534 6732 2.507886 TCGAATCTCTCTCTCTCCCTGT 59.492 50.000 0.00 0.00 0.00 4.00
4535 6733 3.053991 TCGAATCTCTCTCTCTCCCTGTT 60.054 47.826 0.00 0.00 0.00 3.16
4572 6821 7.537715 TGATTTATCGATCTTTTTGTGCACAT 58.462 30.769 22.39 3.78 0.00 3.21
4598 6847 3.202097 TGTTCGTCTCAATGTCTGCAAA 58.798 40.909 0.00 0.00 0.00 3.68
4611 6860 3.957497 TGTCTGCAAAGGGTTATGTTTGT 59.043 39.130 0.00 0.00 36.27 2.83
4616 6865 4.234574 GCAAAGGGTTATGTTTGTGCTAC 58.765 43.478 0.00 0.00 36.27 3.58
4632 6881 5.070001 TGTGCTACTGCCTTAAATTTGACT 58.930 37.500 0.00 0.00 38.71 3.41
4633 6882 5.534654 TGTGCTACTGCCTTAAATTTGACTT 59.465 36.000 0.00 0.00 38.71 3.01
4634 6883 5.858581 GTGCTACTGCCTTAAATTTGACTTG 59.141 40.000 0.00 0.00 38.71 3.16
4635 6884 4.859245 GCTACTGCCTTAAATTTGACTTGC 59.141 41.667 0.00 0.00 0.00 4.01
4636 6885 5.335976 GCTACTGCCTTAAATTTGACTTGCT 60.336 40.000 0.00 0.00 0.00 3.91
4637 6886 5.535753 ACTGCCTTAAATTTGACTTGCTT 57.464 34.783 0.00 0.00 0.00 3.91
4638 6887 6.648879 ACTGCCTTAAATTTGACTTGCTTA 57.351 33.333 0.00 0.00 0.00 3.09
4639 6888 6.681777 ACTGCCTTAAATTTGACTTGCTTAG 58.318 36.000 0.00 0.00 0.00 2.18
4651 6900 4.527038 TGACTTGCTTAGTGCTTACCTACT 59.473 41.667 0.00 0.00 43.37 2.57
4692 6945 4.264253 CTCAATGTTGAGCCACATTCCTA 58.736 43.478 9.59 0.00 46.97 2.94
4720 6973 4.321974 CCTGCTTGACATGTACAGAGTGTA 60.322 45.833 15.49 0.00 0.00 2.90
4872 7132 7.063544 ACACTTTTCTTTAGACTCGATATGCAC 59.936 37.037 0.00 0.00 0.00 4.57
4894 7154 6.402766 GCACTATAATTTGTTACTTGCCGTCA 60.403 38.462 0.00 0.00 0.00 4.35
4907 7167 0.586802 GCCGTCACCAAACAGAAGTC 59.413 55.000 0.00 0.00 0.00 3.01
4945 7214 7.963532 TCATGTTAGTTTGGTCTCTTAGACTT 58.036 34.615 6.99 0.00 44.46 3.01
4951 7220 3.936372 TGGTCTCTTAGACTTTCACCG 57.064 47.619 6.99 0.00 44.46 4.94
5053 7322 0.463620 TTGGCAAACCTGGAACAAGC 59.536 50.000 0.00 0.00 38.70 4.01
5106 7375 1.887242 GATGCGACTTATGGCGGCA 60.887 57.895 16.34 16.34 38.09 5.69
5107 7376 1.227943 ATGCGACTTATGGCGGCAT 60.228 52.632 28.47 28.47 39.35 4.40
5167 7436 1.949257 CCAACTGGACGAAGGCAAC 59.051 57.895 0.00 0.00 37.39 4.17
5169 7438 1.021202 CAACTGGACGAAGGCAACAA 58.979 50.000 0.00 0.00 41.41 2.83
5171 7440 0.107410 ACTGGACGAAGGCAACAACA 60.107 50.000 0.00 0.00 41.41 3.33
5258 7607 5.398603 GCTACCAGCTGAGATGTATGTAT 57.601 43.478 17.39 0.00 38.45 2.29
5265 7614 6.977502 CCAGCTGAGATGTATGTATGCTATAC 59.022 42.308 17.39 0.00 0.00 1.47
5328 7685 8.554528 CAGCAAAGATCGTCTACAATGATAATT 58.445 33.333 0.00 0.00 33.59 1.40
5356 7713 1.499049 GTTTCGTTCGCTTCTCCACT 58.501 50.000 0.00 0.00 0.00 4.00
5386 7743 4.563976 GGCTGCACATATGTTCAACATTTC 59.436 41.667 8.69 0.00 39.88 2.17
5389 7746 7.028962 GCTGCACATATGTTCAACATTTCTTA 58.971 34.615 8.69 0.00 39.88 2.10
5390 7747 7.703621 GCTGCACATATGTTCAACATTTCTTAT 59.296 33.333 8.69 0.00 39.88 1.73
5391 7748 9.229784 CTGCACATATGTTCAACATTTCTTATC 57.770 33.333 8.69 0.00 39.88 1.75
5392 7749 8.190122 TGCACATATGTTCAACATTTCTTATCC 58.810 33.333 8.69 0.00 39.88 2.59
5393 7750 8.408601 GCACATATGTTCAACATTTCTTATCCT 58.591 33.333 8.69 0.00 39.88 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.594478 CCTAAACCTGTTTTCTGTTTAATTTGT 57.406 29.630 0.00 0.00 34.23 2.83
38 39 9.040939 CCCTAAACCTGTTTTCTGTTTAATTTG 57.959 33.333 0.00 0.00 34.23 2.32
39 40 8.208224 CCCCTAAACCTGTTTTCTGTTTAATTT 58.792 33.333 0.00 0.00 34.23 1.82
40 41 7.202056 CCCCCTAAACCTGTTTTCTGTTTAATT 60.202 37.037 0.00 0.00 34.23 1.40
41 42 6.269077 CCCCCTAAACCTGTTTTCTGTTTAAT 59.731 38.462 0.00 0.00 34.23 1.40
42 43 5.599242 CCCCCTAAACCTGTTTTCTGTTTAA 59.401 40.000 0.00 0.00 34.23 1.52
43 44 5.141910 CCCCCTAAACCTGTTTTCTGTTTA 58.858 41.667 0.00 0.00 34.23 2.01
44 45 3.964688 CCCCCTAAACCTGTTTTCTGTTT 59.035 43.478 0.00 0.00 34.23 2.83
45 46 3.572642 CCCCCTAAACCTGTTTTCTGTT 58.427 45.455 0.00 0.00 34.23 3.16
46 47 3.238788 CCCCCTAAACCTGTTTTCTGT 57.761 47.619 0.00 0.00 34.23 3.41
67 68 1.471287 CGCAGGTTTAGGGTTTTAGCC 59.529 52.381 0.00 0.00 35.59 3.93
68 69 2.913777 CGCAGGTTTAGGGTTTTAGC 57.086 50.000 0.00 0.00 0.00 3.09
83 84 2.158959 CGACTAAAGGACGCCGCAG 61.159 63.158 0.00 0.00 0.00 5.18
84 85 2.126228 CGACTAAAGGACGCCGCA 60.126 61.111 0.00 0.00 0.00 5.69
85 86 3.551915 GCGACTAAAGGACGCCGC 61.552 66.667 10.96 0.00 45.35 6.53
89 90 1.349259 CCAACCGCGACTAAAGGACG 61.349 60.000 8.23 0.00 0.00 4.79
90 91 1.632948 GCCAACCGCGACTAAAGGAC 61.633 60.000 8.23 0.00 0.00 3.85
91 92 1.375013 GCCAACCGCGACTAAAGGA 60.375 57.895 8.23 0.00 0.00 3.36
92 93 2.396157 GGCCAACCGCGACTAAAGG 61.396 63.158 8.23 1.23 38.94 3.11
93 94 1.635663 CTGGCCAACCGCGACTAAAG 61.636 60.000 8.23 0.00 39.70 1.85
94 95 1.669760 CTGGCCAACCGCGACTAAA 60.670 57.895 8.23 0.00 39.70 1.85
95 96 2.047655 CTGGCCAACCGCGACTAA 60.048 61.111 8.23 0.00 39.70 2.24
96 97 2.501223 CTTCTGGCCAACCGCGACTA 62.501 60.000 8.23 0.00 39.70 2.59
97 98 3.883744 CTTCTGGCCAACCGCGACT 62.884 63.158 8.23 0.00 39.70 4.18
98 99 3.423154 CTTCTGGCCAACCGCGAC 61.423 66.667 8.23 0.00 39.70 5.19
99 100 3.171828 TTCTTCTGGCCAACCGCGA 62.172 57.895 8.23 0.00 39.70 5.87
100 101 2.668212 TTCTTCTGGCCAACCGCG 60.668 61.111 7.01 0.00 39.70 6.46
101 102 2.626780 GGTTCTTCTGGCCAACCGC 61.627 63.158 7.01 0.00 39.70 5.68
102 103 3.668386 GGTTCTTCTGGCCAACCG 58.332 61.111 7.01 0.00 39.70 4.44
103 104 2.626780 GCGGTTCTTCTGGCCAACC 61.627 63.158 12.82 12.82 36.91 3.77
104 105 2.954611 GCGGTTCTTCTGGCCAAC 59.045 61.111 7.01 0.29 0.00 3.77
105 106 2.668212 CGCGGTTCTTCTGGCCAA 60.668 61.111 7.01 0.00 0.00 4.52
106 107 3.621805 TCGCGGTTCTTCTGGCCA 61.622 61.111 4.71 4.71 0.00 5.36
107 108 2.221906 TAGTCGCGGTTCTTCTGGCC 62.222 60.000 6.13 0.00 0.00 5.36
108 109 0.389426 TTAGTCGCGGTTCTTCTGGC 60.389 55.000 6.13 0.00 0.00 4.85
109 110 1.993370 CTTTAGTCGCGGTTCTTCTGG 59.007 52.381 6.13 0.00 0.00 3.86
110 111 1.993370 CCTTTAGTCGCGGTTCTTCTG 59.007 52.381 6.13 0.00 0.00 3.02
111 112 1.617357 ACCTTTAGTCGCGGTTCTTCT 59.383 47.619 6.13 0.00 0.00 2.85
112 113 1.991264 GACCTTTAGTCGCGGTTCTTC 59.009 52.381 6.13 0.00 35.30 2.87
113 114 2.075979 GACCTTTAGTCGCGGTTCTT 57.924 50.000 6.13 0.00 35.30 2.52
114 115 3.808583 GACCTTTAGTCGCGGTTCT 57.191 52.632 6.13 5.42 35.30 3.01
122 123 1.521141 GGGCGGAGGACCTTTAGTC 59.479 63.158 0.00 0.00 45.51 2.59
123 124 1.993948 GGGGCGGAGGACCTTTAGT 60.994 63.158 0.00 0.00 43.03 2.24
124 125 2.908796 GGGGCGGAGGACCTTTAG 59.091 66.667 0.00 0.00 43.03 1.85
125 126 3.078836 CGGGGCGGAGGACCTTTA 61.079 66.667 0.00 0.00 43.03 1.85
158 159 3.242897 TAAAGGCCCGTCCACGTGG 62.243 63.158 29.26 29.26 37.29 4.94
159 160 1.740296 CTAAAGGCCCGTCCACGTG 60.740 63.158 9.08 9.08 37.29 4.49
160 161 2.163601 GACTAAAGGCCCGTCCACGT 62.164 60.000 0.00 0.00 37.29 4.49
161 162 1.447314 GACTAAAGGCCCGTCCACG 60.447 63.158 0.00 0.00 37.29 4.94
162 163 1.447314 CGACTAAAGGCCCGTCCAC 60.447 63.158 0.00 0.00 37.29 4.02
163 164 2.975536 CGACTAAAGGCCCGTCCA 59.024 61.111 0.00 0.00 37.29 4.02
164 165 2.510918 GCGACTAAAGGCCCGTCC 60.511 66.667 0.00 0.00 0.00 4.79
165 166 2.884207 CGCGACTAAAGGCCCGTC 60.884 66.667 0.00 0.02 0.00 4.79
166 167 4.446413 CCGCGACTAAAGGCCCGT 62.446 66.667 8.23 0.00 0.00 5.28
167 168 3.945304 AACCGCGACTAAAGGCCCG 62.945 63.158 8.23 0.00 0.00 6.13
168 169 2.046604 AACCGCGACTAAAGGCCC 60.047 61.111 8.23 0.00 0.00 5.80
169 170 0.672711 AAGAACCGCGACTAAAGGCC 60.673 55.000 8.23 0.00 0.00 5.19
170 171 2.000429 TAAGAACCGCGACTAAAGGC 58.000 50.000 8.23 0.00 0.00 4.35
171 172 2.347755 GCTTAAGAACCGCGACTAAAGG 59.652 50.000 8.23 0.00 0.00 3.11
172 173 2.991190 TGCTTAAGAACCGCGACTAAAG 59.009 45.455 8.23 4.60 0.00 1.85
173 174 3.029320 TGCTTAAGAACCGCGACTAAA 57.971 42.857 8.23 0.00 0.00 1.85
174 175 2.728690 TGCTTAAGAACCGCGACTAA 57.271 45.000 8.23 0.00 0.00 2.24
175 176 2.331194 GTTGCTTAAGAACCGCGACTA 58.669 47.619 8.23 0.00 35.64 2.59
176 177 1.145803 GTTGCTTAAGAACCGCGACT 58.854 50.000 8.23 0.30 35.64 4.18
177 178 0.165295 GGTTGCTTAAGAACCGCGAC 59.835 55.000 8.23 0.93 37.34 5.19
178 179 2.535588 GGTTGCTTAAGAACCGCGA 58.464 52.632 8.23 0.00 33.85 5.87
182 183 0.165295 GTCGCGGTTGCTTAAGAACC 59.835 55.000 19.09 19.09 39.71 3.62
183 184 1.145803 AGTCGCGGTTGCTTAAGAAC 58.854 50.000 6.13 7.82 39.65 3.01
184 185 2.728690 TAGTCGCGGTTGCTTAAGAA 57.271 45.000 6.13 0.00 39.65 2.52
185 186 2.728690 TTAGTCGCGGTTGCTTAAGA 57.271 45.000 6.13 0.00 39.65 2.10
186 187 2.991190 TCTTTAGTCGCGGTTGCTTAAG 59.009 45.455 6.13 9.35 39.65 1.85
187 188 2.991190 CTCTTTAGTCGCGGTTGCTTAA 59.009 45.455 6.13 0.00 39.65 1.85
188 189 2.602878 CTCTTTAGTCGCGGTTGCTTA 58.397 47.619 6.13 0.00 39.65 3.09
189 190 1.429463 CTCTTTAGTCGCGGTTGCTT 58.571 50.000 6.13 0.00 39.65 3.91
190 191 0.389948 CCTCTTTAGTCGCGGTTGCT 60.390 55.000 6.13 2.31 39.65 3.91
191 192 1.359459 CCCTCTTTAGTCGCGGTTGC 61.359 60.000 6.13 0.00 37.91 4.17
192 193 0.739813 CCCCTCTTTAGTCGCGGTTG 60.740 60.000 6.13 0.00 0.00 3.77
193 194 1.595357 CCCCTCTTTAGTCGCGGTT 59.405 57.895 6.13 0.00 0.00 4.44
194 195 2.356780 CCCCCTCTTTAGTCGCGGT 61.357 63.158 6.13 0.00 0.00 5.68
195 196 2.499685 CCCCCTCTTTAGTCGCGG 59.500 66.667 6.13 0.00 0.00 6.46
212 213 2.379030 ATAGGCGCGACTAAAGGCCC 62.379 60.000 28.10 5.53 46.75 5.80
213 214 0.532196 AATAGGCGCGACTAAAGGCC 60.532 55.000 28.10 6.29 45.91 5.19
214 215 1.003866 CAAATAGGCGCGACTAAAGGC 60.004 52.381 28.10 0.00 0.00 4.35
215 216 1.597663 CCAAATAGGCGCGACTAAAGG 59.402 52.381 28.10 22.76 0.00 3.11
216 217 2.277084 ACCAAATAGGCGCGACTAAAG 58.723 47.619 28.10 17.87 43.14 1.85
217 218 2.273557 GACCAAATAGGCGCGACTAAA 58.726 47.619 28.10 6.26 43.14 1.85
218 219 1.799917 CGACCAAATAGGCGCGACTAA 60.800 52.381 28.10 9.87 43.14 2.24
219 220 0.248743 CGACCAAATAGGCGCGACTA 60.249 55.000 26.49 26.49 43.14 2.59
220 221 1.518572 CGACCAAATAGGCGCGACT 60.519 57.895 22.96 22.96 43.14 4.18
221 222 3.003478 CGACCAAATAGGCGCGAC 58.997 61.111 12.10 7.34 43.14 5.19
222 223 2.888534 GCGACCAAATAGGCGCGA 60.889 61.111 12.10 0.00 46.90 5.87
226 227 1.427819 CAACCGCGACCAAATAGGC 59.572 57.895 8.23 0.00 43.14 3.93
227 228 1.427819 GCAACCGCGACCAAATAGG 59.572 57.895 8.23 0.00 45.67 2.57
246 247 1.917782 TTGCCATTAGTCGCGGTTGC 61.918 55.000 6.13 0.28 37.91 4.17
247 248 0.732571 ATTGCCATTAGTCGCGGTTG 59.267 50.000 6.13 0.00 0.00 3.77
248 249 1.132262 CAATTGCCATTAGTCGCGGTT 59.868 47.619 6.13 0.00 0.00 4.44
249 250 0.732571 CAATTGCCATTAGTCGCGGT 59.267 50.000 6.13 0.00 0.00 5.68
250 251 0.592247 GCAATTGCCATTAGTCGCGG 60.592 55.000 20.06 0.00 34.31 6.46
251 252 0.925267 CGCAATTGCCATTAGTCGCG 60.925 55.000 24.24 0.00 37.91 5.87
252 253 0.376852 TCGCAATTGCCATTAGTCGC 59.623 50.000 24.24 0.00 37.91 5.19
253 254 2.440501 GTTCGCAATTGCCATTAGTCG 58.559 47.619 24.24 8.02 37.91 4.18
254 255 2.791158 CGGTTCGCAATTGCCATTAGTC 60.791 50.000 24.24 8.06 37.91 2.59
255 256 1.132262 CGGTTCGCAATTGCCATTAGT 59.868 47.619 24.24 0.00 37.91 2.24
256 257 1.826327 CGGTTCGCAATTGCCATTAG 58.174 50.000 24.24 10.22 37.91 1.73
258 259 4.887290 CGGTTCGCAATTGCCATT 57.113 50.000 24.24 0.00 37.91 3.16
269 270 4.084888 GCCTTTGGTCGCGGTTCG 62.085 66.667 6.13 0.00 40.15 3.95
270 271 3.733960 GGCCTTTGGTCGCGGTTC 61.734 66.667 6.13 0.00 0.00 3.62
274 275 2.472232 GAAAAGGGCCTTTGGTCGCG 62.472 60.000 31.06 0.00 33.64 5.87
275 276 1.289066 GAAAAGGGCCTTTGGTCGC 59.711 57.895 31.06 14.65 33.64 5.19
276 277 1.532604 GGGAAAAGGGCCTTTGGTCG 61.533 60.000 31.06 0.00 33.64 4.79
277 278 0.471022 TGGGAAAAGGGCCTTTGGTC 60.471 55.000 31.06 24.05 33.64 4.02
278 279 0.762842 GTGGGAAAAGGGCCTTTGGT 60.763 55.000 31.06 17.43 33.64 3.67
279 280 1.480212 GGTGGGAAAAGGGCCTTTGG 61.480 60.000 31.06 0.00 33.64 3.28
280 281 0.762461 TGGTGGGAAAAGGGCCTTTG 60.762 55.000 31.06 0.00 33.64 2.77
281 282 0.471780 CTGGTGGGAAAAGGGCCTTT 60.472 55.000 25.68 25.68 34.94 3.11
282 283 1.156095 CTGGTGGGAAAAGGGCCTT 59.844 57.895 14.48 14.48 0.00 4.35
283 284 2.091283 ACTGGTGGGAAAAGGGCCT 61.091 57.895 0.00 0.00 0.00 5.19
284 285 1.908299 CACTGGTGGGAAAAGGGCC 60.908 63.158 0.00 0.00 0.00 5.80
285 286 1.152546 ACACTGGTGGGAAAAGGGC 60.153 57.895 5.70 0.00 34.19 5.19
286 287 2.732289 CACACTGGTGGGAAAAGGG 58.268 57.895 5.70 0.00 41.45 3.95
295 296 1.271325 TGCCTTGTATCCACACTGGTG 60.271 52.381 0.00 0.00 44.85 4.17
296 297 1.064003 TGCCTTGTATCCACACTGGT 58.936 50.000 0.00 0.00 39.03 4.00
297 298 1.453155 GTGCCTTGTATCCACACTGG 58.547 55.000 0.00 0.00 39.43 4.00
298 299 1.271325 TGGTGCCTTGTATCCACACTG 60.271 52.381 0.00 0.00 33.30 3.66
299 300 1.003580 CTGGTGCCTTGTATCCACACT 59.996 52.381 0.00 0.00 33.30 3.55
300 301 1.003118 TCTGGTGCCTTGTATCCACAC 59.997 52.381 0.00 0.00 33.30 3.82
301 302 1.003118 GTCTGGTGCCTTGTATCCACA 59.997 52.381 0.00 0.00 0.00 4.17
302 303 1.003118 TGTCTGGTGCCTTGTATCCAC 59.997 52.381 0.00 0.00 0.00 4.02
303 304 1.003118 GTGTCTGGTGCCTTGTATCCA 59.997 52.381 0.00 0.00 0.00 3.41
304 305 1.739067 GTGTCTGGTGCCTTGTATCC 58.261 55.000 0.00 0.00 0.00 2.59
305 306 1.359848 CGTGTCTGGTGCCTTGTATC 58.640 55.000 0.00 0.00 0.00 2.24
306 307 0.036388 CCGTGTCTGGTGCCTTGTAT 60.036 55.000 0.00 0.00 0.00 2.29
307 308 1.369692 CCGTGTCTGGTGCCTTGTA 59.630 57.895 0.00 0.00 0.00 2.41
308 309 2.111043 CCGTGTCTGGTGCCTTGT 59.889 61.111 0.00 0.00 0.00 3.16
309 310 2.469465 ATCCCGTGTCTGGTGCCTTG 62.469 60.000 0.00 0.00 0.00 3.61
310 311 2.185310 GATCCCGTGTCTGGTGCCTT 62.185 60.000 0.00 0.00 0.00 4.35
311 312 2.607750 ATCCCGTGTCTGGTGCCT 60.608 61.111 0.00 0.00 0.00 4.75
312 313 2.125106 GATCCCGTGTCTGGTGCC 60.125 66.667 0.00 0.00 0.00 5.01
313 314 2.125106 GGATCCCGTGTCTGGTGC 60.125 66.667 0.00 0.00 0.00 5.01
314 315 1.219124 CAGGATCCCGTGTCTGGTG 59.781 63.158 8.55 0.00 0.00 4.17
315 316 0.544357 TTCAGGATCCCGTGTCTGGT 60.544 55.000 8.55 0.00 0.00 4.00
316 317 0.833287 ATTCAGGATCCCGTGTCTGG 59.167 55.000 8.55 0.00 0.00 3.86
317 318 1.536922 CGATTCAGGATCCCGTGTCTG 60.537 57.143 8.55 0.00 0.00 3.51
318 319 0.747255 CGATTCAGGATCCCGTGTCT 59.253 55.000 8.55 0.00 0.00 3.41
319 320 0.249489 CCGATTCAGGATCCCGTGTC 60.249 60.000 8.55 1.38 0.00 3.67
320 321 1.686325 CCCGATTCAGGATCCCGTGT 61.686 60.000 8.55 0.00 0.00 4.49
321 322 1.069765 CCCGATTCAGGATCCCGTG 59.930 63.158 8.55 0.59 0.00 4.94
322 323 2.808206 GCCCGATTCAGGATCCCGT 61.808 63.158 8.55 0.00 0.00 5.28
323 324 2.031163 GCCCGATTCAGGATCCCG 59.969 66.667 8.55 4.07 0.00 5.14
324 325 1.227973 GTGCCCGATTCAGGATCCC 60.228 63.158 8.55 0.00 0.00 3.85
325 326 0.107214 TTGTGCCCGATTCAGGATCC 60.107 55.000 2.48 2.48 0.00 3.36
326 327 1.017387 GTTGTGCCCGATTCAGGATC 58.983 55.000 0.00 0.00 0.00 3.36
327 328 0.744414 CGTTGTGCCCGATTCAGGAT 60.744 55.000 0.00 0.00 0.00 3.24
328 329 1.375396 CGTTGTGCCCGATTCAGGA 60.375 57.895 0.00 0.00 0.00 3.86
329 330 1.671054 ACGTTGTGCCCGATTCAGG 60.671 57.895 0.00 0.00 0.00 3.86
330 331 0.948623 TCACGTTGTGCCCGATTCAG 60.949 55.000 0.00 0.00 32.98 3.02
331 332 0.533085 TTCACGTTGTGCCCGATTCA 60.533 50.000 0.00 0.00 32.98 2.57
332 333 0.802494 ATTCACGTTGTGCCCGATTC 59.198 50.000 0.00 0.00 32.98 2.52
333 334 0.521291 CATTCACGTTGTGCCCGATT 59.479 50.000 0.00 0.00 32.98 3.34
334 335 1.305219 CCATTCACGTTGTGCCCGAT 61.305 55.000 0.00 0.00 32.98 4.18
335 336 1.963855 CCATTCACGTTGTGCCCGA 60.964 57.895 0.00 0.00 32.98 5.14
336 337 2.560861 CCATTCACGTTGTGCCCG 59.439 61.111 0.00 0.00 32.98 6.13
337 338 2.635443 CCCCATTCACGTTGTGCCC 61.635 63.158 0.00 0.00 32.98 5.36
338 339 1.862602 GACCCCATTCACGTTGTGCC 61.863 60.000 0.00 0.00 32.98 5.01
339 340 1.169661 TGACCCCATTCACGTTGTGC 61.170 55.000 0.00 0.00 32.98 4.57
340 341 0.591170 GTGACCCCATTCACGTTGTG 59.409 55.000 0.00 0.00 36.79 3.33
341 342 3.015516 GTGACCCCATTCACGTTGT 57.984 52.632 0.00 0.00 36.79 3.32
346 347 0.110486 ACTGGTGTGACCCCATTCAC 59.890 55.000 0.00 0.00 45.34 3.18
347 348 0.110295 CACTGGTGTGACCCCATTCA 59.890 55.000 0.00 0.00 46.55 2.57
348 349 1.244019 GCACTGGTGTGACCCCATTC 61.244 60.000 0.00 0.00 46.55 2.67
349 350 1.228552 GCACTGGTGTGACCCCATT 60.229 57.895 0.00 0.00 46.55 3.16
350 351 2.436109 GCACTGGTGTGACCCCAT 59.564 61.111 0.00 0.00 46.55 4.00
351 352 3.884774 GGCACTGGTGTGACCCCA 61.885 66.667 0.00 0.00 46.20 4.96
356 357 3.899981 GATGGCGGCACTGGTGTGA 62.900 63.158 16.34 0.00 46.55 3.58
357 358 3.434319 GATGGCGGCACTGGTGTG 61.434 66.667 16.34 0.00 46.37 3.82
358 359 4.722700 GGATGGCGGCACTGGTGT 62.723 66.667 16.34 0.00 0.00 4.16
391 392 4.988598 ACGGTTGGTGGAGCAGCG 62.989 66.667 0.00 0.00 34.27 5.18
392 393 3.357079 CACGGTTGGTGGAGCAGC 61.357 66.667 0.00 0.00 43.16 5.25
393 394 1.961277 GTCACGGTTGGTGGAGCAG 60.961 63.158 0.00 0.00 46.96 4.24
394 395 2.110213 GTCACGGTTGGTGGAGCA 59.890 61.111 0.00 0.00 46.96 4.26
395 396 1.668151 GAGTCACGGTTGGTGGAGC 60.668 63.158 0.00 0.00 46.96 4.70
396 397 1.202582 CTAGAGTCACGGTTGGTGGAG 59.797 57.143 0.00 0.00 46.96 3.86
397 398 1.254026 CTAGAGTCACGGTTGGTGGA 58.746 55.000 0.00 0.00 46.96 4.02
398 399 0.966920 ACTAGAGTCACGGTTGGTGG 59.033 55.000 0.00 0.00 46.96 4.61
400 401 1.991121 TCACTAGAGTCACGGTTGGT 58.009 50.000 0.00 0.00 0.00 3.67
401 402 2.417379 CCATCACTAGAGTCACGGTTGG 60.417 54.545 0.00 0.00 0.00 3.77
402 403 2.231478 ACCATCACTAGAGTCACGGTTG 59.769 50.000 0.00 0.00 0.00 3.77
403 404 2.526432 ACCATCACTAGAGTCACGGTT 58.474 47.619 0.00 0.00 0.00 4.44
404 405 2.217510 ACCATCACTAGAGTCACGGT 57.782 50.000 0.00 0.00 0.00 4.83
405 406 2.417379 CCAACCATCACTAGAGTCACGG 60.417 54.545 0.00 0.00 0.00 4.94
406 407 2.231478 ACCAACCATCACTAGAGTCACG 59.769 50.000 0.00 0.00 0.00 4.35
407 408 3.963428 ACCAACCATCACTAGAGTCAC 57.037 47.619 0.00 0.00 0.00 3.67
408 409 4.673968 ACTACCAACCATCACTAGAGTCA 58.326 43.478 0.00 0.00 0.00 3.41
409 410 5.887035 ACTACTACCAACCATCACTAGAGTC 59.113 44.000 0.00 0.00 0.00 3.36
410 411 5.828871 ACTACTACCAACCATCACTAGAGT 58.171 41.667 0.00 0.00 0.00 3.24
411 412 6.262720 GGTACTACTACCAACCATCACTAGAG 59.737 46.154 0.00 0.00 42.16 2.43
412 413 6.125029 GGTACTACTACCAACCATCACTAGA 58.875 44.000 0.00 0.00 42.16 2.43
413 414 5.301298 GGGTACTACTACCAACCATCACTAG 59.699 48.000 0.00 0.00 44.18 2.57
414 415 5.203528 GGGTACTACTACCAACCATCACTA 58.796 45.833 0.00 0.00 44.18 2.74
415 416 4.028825 GGGTACTACTACCAACCATCACT 58.971 47.826 0.00 0.00 44.18 3.41
445 446 3.940209 TCGCAAAAGCAAATGAGGAAT 57.060 38.095 0.00 0.00 0.00 3.01
448 449 1.715519 CGTTCGCAAAAGCAAATGAGG 59.284 47.619 0.00 0.00 0.00 3.86
449 450 1.123038 GCGTTCGCAAAAGCAAATGAG 59.877 47.619 12.33 0.00 39.36 2.90
450 451 1.127701 GCGTTCGCAAAAGCAAATGA 58.872 45.000 12.33 0.00 39.36 2.57
504 505 7.391554 AGCAAGCACTAGATGATTAGAAAAACA 59.608 33.333 0.00 0.00 33.63 2.83
522 523 4.611581 GCAGTAAAAGTAGTGAGCAAGCAC 60.612 45.833 0.00 0.00 39.05 4.40
523 524 3.498397 GCAGTAAAAGTAGTGAGCAAGCA 59.502 43.478 0.00 0.00 33.08 3.91
544 545 2.412037 AAGTCGCAAAAGCCAGCAGC 62.412 55.000 0.00 0.00 44.25 5.25
602 609 8.976471 CATTATTGGATCTGATATATCGAGCAC 58.024 37.037 17.99 11.36 0.00 4.40
609 616 8.943085 GGACCCTCATTATTGGATCTGATATAT 58.057 37.037 0.00 0.00 0.00 0.86
612 619 6.090870 TGGACCCTCATTATTGGATCTGATA 58.909 40.000 0.00 0.00 0.00 2.15
615 622 4.712051 TGGACCCTCATTATTGGATCTG 57.288 45.455 0.00 0.00 0.00 2.90
632 639 5.882557 CACATTCTATGGGGCTAATATGGAC 59.117 44.000 0.00 0.00 33.60 4.02
637 644 3.326588 ACGCACATTCTATGGGGCTAATA 59.673 43.478 0.00 0.00 33.18 0.98
663 672 2.406596 TATTTAGGAACGGGTGGCAC 57.593 50.000 9.70 9.70 0.00 5.01
667 676 8.085909 AGAAAAACAAATATTTAGGAACGGGTG 58.914 33.333 0.00 0.00 0.00 4.61
668 677 8.185506 AGAAAAACAAATATTTAGGAACGGGT 57.814 30.769 0.00 0.00 0.00 5.28
669 678 9.783256 CTAGAAAAACAAATATTTAGGAACGGG 57.217 33.333 0.00 0.00 0.00 5.28
685 694 9.787532 CACTTGTTGAAAATCTCTAGAAAAACA 57.212 29.630 0.00 0.00 0.00 2.83
688 697 9.396022 AGTCACTTGTTGAAAATCTCTAGAAAA 57.604 29.630 0.00 0.00 35.39 2.29
689 698 8.964476 AGTCACTTGTTGAAAATCTCTAGAAA 57.036 30.769 0.00 0.00 35.39 2.52
694 703 9.778741 TTGTATAGTCACTTGTTGAAAATCTCT 57.221 29.630 0.00 0.00 35.39 3.10
700 709 7.561021 TTGCTTGTATAGTCACTTGTTGAAA 57.439 32.000 0.00 0.00 35.39 2.69
701 710 7.561021 TTTGCTTGTATAGTCACTTGTTGAA 57.439 32.000 0.00 0.00 35.39 2.69
702 711 7.561021 TTTTGCTTGTATAGTCACTTGTTGA 57.439 32.000 0.00 0.00 0.00 3.18
704 713 8.165239 TCATTTTGCTTGTATAGTCACTTGTT 57.835 30.769 0.00 0.00 0.00 2.83
705 714 7.445402 ACTCATTTTGCTTGTATAGTCACTTGT 59.555 33.333 0.00 0.00 0.00 3.16
706 715 7.747799 CACTCATTTTGCTTGTATAGTCACTTG 59.252 37.037 0.00 0.00 0.00 3.16
707 716 7.661437 TCACTCATTTTGCTTGTATAGTCACTT 59.339 33.333 0.00 0.00 0.00 3.16
708 717 7.161404 TCACTCATTTTGCTTGTATAGTCACT 58.839 34.615 0.00 0.00 0.00 3.41
710 719 7.977789 TTCACTCATTTTGCTTGTATAGTCA 57.022 32.000 0.00 0.00 0.00 3.41
760 769 9.687210 AACGACAATATGACAATATACGTATGT 57.313 29.630 18.37 8.79 34.85 2.29
762 771 9.902196 TGAACGACAATATGACAATATACGTAT 57.098 29.630 13.54 13.54 34.85 3.06
763 772 9.902196 ATGAACGACAATATGACAATATACGTA 57.098 29.630 0.00 0.00 34.85 3.57
764 773 8.812147 ATGAACGACAATATGACAATATACGT 57.188 30.769 0.00 0.00 36.09 3.57
770 779 9.859427 ATTTGAAATGAACGACAATATGACAAT 57.141 25.926 0.00 0.00 0.00 2.71
771 780 9.127006 CATTTGAAATGAACGACAATATGACAA 57.873 29.630 12.37 0.00 0.00 3.18
772 781 8.296000 ACATTTGAAATGAACGACAATATGACA 58.704 29.630 23.37 0.00 0.00 3.58
773 782 8.673626 ACATTTGAAATGAACGACAATATGAC 57.326 30.769 23.37 0.00 0.00 3.06
774 783 8.729756 AGACATTTGAAATGAACGACAATATGA 58.270 29.630 23.37 0.00 0.00 2.15
775 784 8.900511 AGACATTTGAAATGAACGACAATATG 57.099 30.769 23.37 0.00 0.00 1.78
777 786 9.430623 TCTAGACATTTGAAATGAACGACAATA 57.569 29.630 23.37 5.63 0.00 1.90
778 787 8.322906 TCTAGACATTTGAAATGAACGACAAT 57.677 30.769 23.37 0.00 0.00 2.71
779 788 7.722795 TCTAGACATTTGAAATGAACGACAA 57.277 32.000 23.37 1.42 0.00 3.18
780 789 7.722795 TTCTAGACATTTGAAATGAACGACA 57.277 32.000 23.37 1.88 0.00 4.35
781 790 8.495949 TCTTTCTAGACATTTGAAATGAACGAC 58.504 33.333 23.37 9.42 31.69 4.34
782 791 8.601845 TCTTTCTAGACATTTGAAATGAACGA 57.398 30.769 23.37 11.12 31.69 3.85
804 813 9.813446 CCGTTCCTAAATAGTAGTATTTGTCTT 57.187 33.333 21.04 2.17 38.93 3.01
805 814 9.193806 TCCGTTCCTAAATAGTAGTATTTGTCT 57.806 33.333 21.04 2.49 38.93 3.41
806 815 9.460906 CTCCGTTCCTAAATAGTAGTATTTGTC 57.539 37.037 21.04 9.00 38.93 3.18
807 816 8.419442 CCTCCGTTCCTAAATAGTAGTATTTGT 58.581 37.037 21.04 3.42 38.93 2.83
808 817 7.871463 CCCTCCGTTCCTAAATAGTAGTATTTG 59.129 40.741 21.04 12.78 38.93 2.32
809 818 7.786464 TCCCTCCGTTCCTAAATAGTAGTATTT 59.214 37.037 17.51 17.51 41.05 1.40
810 819 7.300658 TCCCTCCGTTCCTAAATAGTAGTATT 58.699 38.462 0.00 0.00 0.00 1.89
811 820 6.856757 TCCCTCCGTTCCTAAATAGTAGTAT 58.143 40.000 0.00 0.00 0.00 2.12
812 821 6.126361 ACTCCCTCCGTTCCTAAATAGTAGTA 60.126 42.308 0.00 0.00 0.00 1.82
813 822 5.134725 TCCCTCCGTTCCTAAATAGTAGT 57.865 43.478 0.00 0.00 0.00 2.73
814 823 5.139001 ACTCCCTCCGTTCCTAAATAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
815 824 5.134725 ACTCCCTCCGTTCCTAAATAGTA 57.865 43.478 0.00 0.00 0.00 1.82
816 825 3.991683 ACTCCCTCCGTTCCTAAATAGT 58.008 45.455 0.00 0.00 0.00 2.12
817 826 4.891756 TGTACTCCCTCCGTTCCTAAATAG 59.108 45.833 0.00 0.00 0.00 1.73
818 827 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
819 828 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
820 829 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
821 830 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
822 831 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
823 832 2.249309 ATTGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
824 833 4.502777 GGATTATTGTACTCCCTCCGTTCC 60.503 50.000 0.00 0.00 0.00 3.62
825 834 4.502777 GGGATTATTGTACTCCCTCCGTTC 60.503 50.000 9.40 0.00 44.49 3.95
826 835 3.390311 GGGATTATTGTACTCCCTCCGTT 59.610 47.826 9.40 0.00 44.49 4.44
827 836 2.970640 GGGATTATTGTACTCCCTCCGT 59.029 50.000 9.40 0.00 44.49 4.69
828 837 2.302157 GGGGATTATTGTACTCCCTCCG 59.698 54.545 14.90 0.00 46.67 4.63
829 838 2.302157 CGGGGATTATTGTACTCCCTCC 59.698 54.545 14.90 5.58 46.67 4.30
830 839 2.970640 ACGGGGATTATTGTACTCCCTC 59.029 50.000 14.90 6.39 46.67 4.30
831 840 2.970640 GACGGGGATTATTGTACTCCCT 59.029 50.000 14.90 0.00 46.67 4.20
832 841 2.288640 CGACGGGGATTATTGTACTCCC 60.289 54.545 8.35 8.35 46.74 4.30
833 842 2.363359 ACGACGGGGATTATTGTACTCC 59.637 50.000 0.00 0.00 0.00 3.85
834 843 3.378339 CACGACGGGGATTATTGTACTC 58.622 50.000 0.00 0.00 0.00 2.59
837 846 1.758280 AGCACGACGGGGATTATTGTA 59.242 47.619 0.00 0.00 0.00 2.41
888 904 3.678056 AGAAATGAACTCGGTGTAGCA 57.322 42.857 0.00 0.00 0.00 3.49
904 920 3.510360 ACGAAGCAGCTAGGAGTAAGAAA 59.490 43.478 0.00 0.00 0.00 2.52
920 944 4.175787 TGAGGAGTAGAAAGAACGAAGC 57.824 45.455 0.00 0.00 0.00 3.86
925 949 5.216614 AGGTGTTGAGGAGTAGAAAGAAC 57.783 43.478 0.00 0.00 0.00 3.01
926 950 4.899457 TGAGGTGTTGAGGAGTAGAAAGAA 59.101 41.667 0.00 0.00 0.00 2.52
927 951 4.281182 GTGAGGTGTTGAGGAGTAGAAAGA 59.719 45.833 0.00 0.00 0.00 2.52
928 952 4.561105 GTGAGGTGTTGAGGAGTAGAAAG 58.439 47.826 0.00 0.00 0.00 2.62
929 953 3.323979 GGTGAGGTGTTGAGGAGTAGAAA 59.676 47.826 0.00 0.00 0.00 2.52
930 954 2.897969 GGTGAGGTGTTGAGGAGTAGAA 59.102 50.000 0.00 0.00 0.00 2.10
931 955 2.158370 TGGTGAGGTGTTGAGGAGTAGA 60.158 50.000 0.00 0.00 0.00 2.59
932 956 2.248248 TGGTGAGGTGTTGAGGAGTAG 58.752 52.381 0.00 0.00 0.00 2.57
955 979 1.823610 TGATCCTCTCACAGACAGCAG 59.176 52.381 0.00 0.00 0.00 4.24
962 986 4.614764 CGGTTCGATATGATCCTCTCACAG 60.615 50.000 0.00 0.00 36.48 3.66
981 1005 4.638304 CCATTAATTATCTCCGACCGGTT 58.362 43.478 9.42 0.00 36.47 4.44
982 1006 3.556423 GCCATTAATTATCTCCGACCGGT 60.556 47.826 6.92 6.92 36.47 5.28
984 1008 3.659786 TGCCATTAATTATCTCCGACCG 58.340 45.455 0.00 0.00 0.00 4.79
986 1010 4.003648 CCCTGCCATTAATTATCTCCGAC 58.996 47.826 0.00 0.00 0.00 4.79
987 1011 3.907474 TCCCTGCCATTAATTATCTCCGA 59.093 43.478 0.00 0.00 0.00 4.55
988 1012 4.003648 GTCCCTGCCATTAATTATCTCCG 58.996 47.826 0.00 0.00 0.00 4.63
990 1014 4.003648 CCGTCCCTGCCATTAATTATCTC 58.996 47.826 0.00 0.00 0.00 2.75
991 1015 3.394606 ACCGTCCCTGCCATTAATTATCT 59.605 43.478 0.00 0.00 0.00 1.98
992 1016 3.502211 CACCGTCCCTGCCATTAATTATC 59.498 47.826 0.00 0.00 0.00 1.75
993 1017 3.486383 CACCGTCCCTGCCATTAATTAT 58.514 45.455 0.00 0.00 0.00 1.28
994 1018 2.925724 CACCGTCCCTGCCATTAATTA 58.074 47.619 0.00 0.00 0.00 1.40
995 1019 1.762708 CACCGTCCCTGCCATTAATT 58.237 50.000 0.00 0.00 0.00 1.40
996 1020 0.751643 GCACCGTCCCTGCCATTAAT 60.752 55.000 0.00 0.00 0.00 1.40
997 1021 1.377987 GCACCGTCCCTGCCATTAA 60.378 57.895 0.00 0.00 0.00 1.40
1017 1041 2.191375 ATGGACCTCGCCATGCTG 59.809 61.111 0.00 0.00 46.62 4.41
1138 1181 4.236935 GGAATTACGTACACGACCTGAAA 58.763 43.478 9.04 0.00 43.02 2.69
1150 1193 2.463752 AGAGGCTGTGGGAATTACGTA 58.536 47.619 0.00 0.00 0.00 3.57
1151 1194 1.276622 AGAGGCTGTGGGAATTACGT 58.723 50.000 0.00 0.00 0.00 3.57
1152 1195 2.403252 AAGAGGCTGTGGGAATTACG 57.597 50.000 0.00 0.00 0.00 3.18
1153 1196 5.299531 GGAAATAAGAGGCTGTGGGAATTAC 59.700 44.000 0.00 0.00 0.00 1.89
1174 2743 8.214721 TGGACTAAGAGAAGAATAAAAGGGAA 57.785 34.615 0.00 0.00 0.00 3.97
1183 2752 7.911651 TCAACAAGATGGACTAAGAGAAGAAT 58.088 34.615 0.00 0.00 0.00 2.40
1191 2760 5.997746 TGTTCCTTCAACAAGATGGACTAAG 59.002 40.000 0.00 0.00 46.81 2.18
1208 2926 0.746659 GCAACAAGCTGGTGTTCCTT 59.253 50.000 0.00 0.00 39.73 3.36
1287 3276 6.577103 TGAATGCTTGGTTTTAATGTGTCAA 58.423 32.000 0.00 0.00 0.00 3.18
1309 3331 6.072728 GCGGCCACATACAGAAATTTATATGA 60.073 38.462 17.30 0.00 0.00 2.15
1332 3354 1.296867 CGCTTTGTGCTATTCCGCG 60.297 57.895 0.00 0.00 40.11 6.46
1377 3400 4.312443 TGATGAACCTACCAAACGAAGTC 58.688 43.478 0.00 0.00 45.00 3.01
1646 3669 1.263217 GGTTGTAGCGTGTGTTCTTGG 59.737 52.381 0.00 0.00 0.00 3.61
1649 3672 1.411246 TCAGGTTGTAGCGTGTGTTCT 59.589 47.619 0.00 0.00 0.00 3.01
1692 3715 5.681437 GCAAGAATACCTCTCATCAACGGTA 60.681 44.000 0.00 0.00 36.53 4.02
2052 4079 2.801077 TTTTCCTAAGGTAGCCAGCC 57.199 50.000 0.00 0.00 0.00 4.85
2082 4109 7.973388 TCATCAAGAACAACAAAGTACCTTTTG 59.027 33.333 6.14 6.14 42.38 2.44
2244 4271 2.438021 GGGTGCATGGTGGTAGATAAGA 59.562 50.000 0.00 0.00 0.00 2.10
2330 4357 9.717892 CTATTTCTCTCATGTTCACATCATTTG 57.282 33.333 0.00 0.00 33.61 2.32
2372 4399 2.244946 GGCAACCGTCCAGACTTTC 58.755 57.895 0.00 0.00 0.00 2.62
2445 4474 6.045577 AGGGGATCTGGTTATAAATACTTGGG 59.954 42.308 0.00 0.00 0.00 4.12
2447 4476 9.726438 CTAAGGGGATCTGGTTATAAATACTTG 57.274 37.037 0.00 0.00 0.00 3.16
2598 4627 1.695242 TCAACCAGACGCCTCCTTTTA 59.305 47.619 0.00 0.00 0.00 1.52
2738 4767 3.181461 ACAACTCTTCACAGTTCCCTCTG 60.181 47.826 0.00 0.00 40.80 3.35
2895 4924 3.384467 CCCGATCCATGCTTTTATTTGGT 59.616 43.478 0.00 0.00 0.00 3.67
3006 5035 1.638070 TGGGCATCATGTAGGTCCAAA 59.362 47.619 5.16 0.00 0.00 3.28
3105 5134 7.226720 AGCTTATGAACATATAAACCTTCACCG 59.773 37.037 0.00 0.00 0.00 4.94
3126 5155 7.072454 AGTTTACATATGGATCTTGGGAGCTTA 59.928 37.037 7.80 0.00 0.00 3.09
3145 5174 2.940994 TGCAAGCCCTGTAGTTTACA 57.059 45.000 0.00 0.00 37.13 2.41
3209 5238 5.391312 AAGGCATTGTAGTTTTGTGATCC 57.609 39.130 0.00 0.00 0.00 3.36
3378 5410 1.377725 GCCAGTCCAGACCATGTGG 60.378 63.158 0.00 0.00 42.17 4.17
3550 5586 1.344114 CTTTTGCTTGCTTGCCCCTAA 59.656 47.619 0.00 0.00 0.00 2.69
3633 5669 5.124457 CCACTTGAGACCAATTGTCCAATAG 59.876 44.000 4.43 0.00 45.68 1.73
3634 5670 5.009631 CCACTTGAGACCAATTGTCCAATA 58.990 41.667 4.43 0.00 45.68 1.90
3644 5692 2.363306 ATGCAACCACTTGAGACCAA 57.637 45.000 0.00 0.00 0.00 3.67
3754 5814 5.245531 TGACCATAGTAAAAGCTTCACCAG 58.754 41.667 0.00 0.00 0.00 4.00
3781 5841 8.861086 CATACTTTTACCTCCTTCTGCTAGATA 58.139 37.037 0.00 0.00 0.00 1.98
3828 5888 5.649831 ACCAAGATAAAGGAACATGAGCTTC 59.350 40.000 0.00 0.00 0.00 3.86
3867 5927 5.125417 TGCTTTGAACACTAGTTTTTCTGCT 59.875 36.000 12.96 0.00 38.30 4.24
3882 5942 7.706607 AGGTTTAAGAATGTTTCTGCTTTGAAC 59.293 33.333 0.00 0.00 40.59 3.18
3918 5978 6.148811 TCGGTTGATTCTCACAATAAACTTCC 59.851 38.462 0.00 0.00 0.00 3.46
3921 5981 6.464222 TCTCGGTTGATTCTCACAATAAACT 58.536 36.000 0.00 0.00 0.00 2.66
3922 5982 6.590292 TCTCTCGGTTGATTCTCACAATAAAC 59.410 38.462 0.00 0.00 0.00 2.01
3926 5986 4.221703 ACTCTCTCGGTTGATTCTCACAAT 59.778 41.667 0.00 0.00 0.00 2.71
4047 6107 7.402640 CGTCACTAATAAAAATCTCCTTGAGC 58.597 38.462 0.00 0.00 0.00 4.26
4069 6129 2.171940 CGCAACTTGAGCAGCGTC 59.828 61.111 8.82 0.00 44.67 5.19
4093 6153 5.602628 GTTGACTTCACCTTCTAGAACACT 58.397 41.667 0.00 0.00 0.00 3.55
4098 6158 2.626266 TGCGTTGACTTCACCTTCTAGA 59.374 45.455 0.00 0.00 0.00 2.43
4101 6161 1.134521 TGTGCGTTGACTTCACCTTCT 60.135 47.619 0.00 0.00 0.00 2.85
4313 6454 3.056588 TGTGCAACATACATCTCAGCA 57.943 42.857 0.00 0.00 45.67 4.41
4329 6477 7.533426 AGAGATTAGTGAATCAAAACATGTGC 58.467 34.615 0.00 0.00 43.51 4.57
4346 6494 3.813166 GGGACGAGACAGAGAGAGATTAG 59.187 52.174 0.00 0.00 0.00 1.73
4367 6516 2.544685 CAGGTCATCTTCGCTGTAAGG 58.455 52.381 0.00 0.00 0.00 2.69
4472 6669 1.170290 GCAAGGTGTTACAAGGCGGT 61.170 55.000 0.00 0.00 0.00 5.68
4530 6728 0.984230 TCAGCAGGGGTAGAAACAGG 59.016 55.000 0.00 0.00 0.00 4.00
4533 6731 4.511826 CGATAAATCAGCAGGGGTAGAAAC 59.488 45.833 0.00 0.00 0.00 2.78
4534 6732 4.407621 TCGATAAATCAGCAGGGGTAGAAA 59.592 41.667 0.00 0.00 0.00 2.52
4535 6733 3.964688 TCGATAAATCAGCAGGGGTAGAA 59.035 43.478 0.00 0.00 0.00 2.10
4572 6821 4.051237 CAGACATTGAGACGAACAGTTGA 58.949 43.478 0.00 0.00 0.00 3.18
4598 6847 3.081804 GCAGTAGCACAAACATAACCCT 58.918 45.455 0.00 0.00 41.58 4.34
4611 6860 5.564651 GCAAGTCAAATTTAAGGCAGTAGCA 60.565 40.000 0.00 0.00 44.61 3.49
4616 6865 6.583806 CACTAAGCAAGTCAAATTTAAGGCAG 59.416 38.462 0.00 0.00 35.76 4.85
4634 6883 3.190874 CAGCAGTAGGTAAGCACTAAGC 58.809 50.000 0.00 0.00 46.19 3.09
4635 6884 4.158764 AGACAGCAGTAGGTAAGCACTAAG 59.841 45.833 0.00 0.00 0.00 2.18
4636 6885 4.082190 CAGACAGCAGTAGGTAAGCACTAA 60.082 45.833 0.00 0.00 0.00 2.24
4637 6886 3.444034 CAGACAGCAGTAGGTAAGCACTA 59.556 47.826 0.00 0.00 0.00 2.74
4638 6887 2.232452 CAGACAGCAGTAGGTAAGCACT 59.768 50.000 0.00 0.00 0.00 4.40
4639 6888 2.231478 TCAGACAGCAGTAGGTAAGCAC 59.769 50.000 0.00 0.00 0.00 4.40
4680 6929 3.203040 AGCAGGTAAATAGGAATGTGGCT 59.797 43.478 0.00 0.00 0.00 4.75
4682 6931 5.066505 GTCAAGCAGGTAAATAGGAATGTGG 59.933 44.000 0.00 0.00 0.00 4.17
4692 6945 5.804639 TCTGTACATGTCAAGCAGGTAAAT 58.195 37.500 0.00 0.00 44.51 1.40
4720 6973 7.229506 GCAGCCTTGGAAACTTGATACTATAAT 59.770 37.037 0.00 0.00 0.00 1.28
4872 7132 6.092944 TGGTGACGGCAAGTAACAAATTATAG 59.907 38.462 0.00 0.00 35.84 1.31
4894 7154 5.632034 AGAAACTAGGACTTCTGTTTGGT 57.368 39.130 0.00 0.00 33.49 3.67
4907 7167 9.463443 CCAAACTAACATGAAAAAGAAACTAGG 57.537 33.333 0.00 0.00 0.00 3.02
4992 7261 2.818130 GGCAACAAGGATGCTTCAAA 57.182 45.000 0.00 0.00 43.34 2.69
5053 7322 1.687563 TTGATCATGCCATGCTCCAG 58.312 50.000 6.10 0.00 0.00 3.86
5106 7375 6.264067 GCCTTCAGCAGAAAATCAGGTAATAT 59.736 38.462 0.00 0.00 42.97 1.28
5107 7376 5.590259 GCCTTCAGCAGAAAATCAGGTAATA 59.410 40.000 0.00 0.00 42.97 0.98
5167 7436 5.278463 CCCAACTCAAGTACTTCCATTGTTG 60.278 44.000 4.77 14.43 34.07 3.33
5169 7438 4.398319 CCCAACTCAAGTACTTCCATTGT 58.602 43.478 4.77 0.00 0.00 2.71
5171 7440 3.181434 TGCCCAACTCAAGTACTTCCATT 60.181 43.478 4.77 0.00 0.00 3.16
5199 7544 2.225068 ACTGACCTGTCTGAACGTTG 57.775 50.000 5.00 0.00 33.48 4.10
5202 7547 2.225068 ACAACTGACCTGTCTGAACG 57.775 50.000 10.63 0.00 33.48 3.95
5258 7607 7.806409 ATCAAAACATGTGCATAGTATAGCA 57.194 32.000 0.00 3.93 38.65 3.49
5356 7713 1.413812 ACATATGTGCAGCCGATCTGA 59.586 47.619 7.78 0.00 45.72 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.