Multiple sequence alignment - TraesCS4A01G448900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G448900 chr4A 100.000 1981 0 0 1 1981 715296285 715298265 0.000000e+00 3659.0
1 TraesCS4A01G448900 chr4A 100.000 1624 0 0 2513 4136 715298797 715300420 0.000000e+00 3000.0
2 TraesCS4A01G448900 chr4A 95.764 968 39 2 2513 3479 543415638 543416604 0.000000e+00 1559.0
3 TraesCS4A01G448900 chr4A 82.900 538 41 26 968 1464 714757806 714758333 1.770000e-118 436.0
4 TraesCS4A01G448900 chr4A 87.273 385 26 13 1100 1464 715354042 715354423 6.390000e-113 418.0
5 TraesCS4A01G448900 chr4A 95.294 255 9 3 3474 3728 714565522 714565773 6.440000e-108 401.0
6 TraesCS4A01G448900 chr4A 95.902 244 10 0 3474 3717 714521023 714521266 3.000000e-106 396.0
7 TraesCS4A01G448900 chr4A 93.852 244 15 0 3474 3717 714764878 714765121 6.530000e-98 368.0
8 TraesCS4A01G448900 chr4A 92.213 244 15 1 3474 3717 715209217 715209456 3.960000e-90 342.0
9 TraesCS4A01G448900 chr4A 87.013 308 14 9 964 1248 714520032 714520336 1.430000e-84 324.0
10 TraesCS4A01G448900 chr4A 92.814 167 10 2 1815 1980 712653096 712652931 1.490000e-59 241.0
11 TraesCS4A01G448900 chr4A 98.276 116 2 0 203 318 356606047 356605932 1.950000e-48 204.0
12 TraesCS4A01G448900 chr4A 87.333 150 18 1 1099 1248 714564579 714564727 1.980000e-38 171.0
13 TraesCS4A01G448900 chr4A 83.516 182 21 7 446 622 714503826 714504003 1.190000e-35 161.0
14 TraesCS4A01G448900 chr4A 79.558 181 31 4 1616 1795 715209049 715209224 1.560000e-24 124.0
15 TraesCS4A01G448900 chr1B 97.647 935 20 2 2543 3476 36283408 36282475 0.000000e+00 1604.0
16 TraesCS4A01G448900 chr1B 97.629 928 21 1 2544 3470 688125994 688126921 0.000000e+00 1591.0
17 TraesCS4A01G448900 chr1B 98.765 162 1 1 1821 1981 36284015 36283854 1.880000e-73 287.0
18 TraesCS4A01G448900 chr1B 97.576 165 3 1 1818 1981 688125305 688125469 8.750000e-72 281.0
19 TraesCS4A01G448900 chr7B 96.855 954 26 3 2519 3472 120789700 120788751 0.000000e+00 1592.0
20 TraesCS4A01G448900 chr7B 98.788 165 1 1 1818 1981 120790265 120790101 4.040000e-75 292.0
21 TraesCS4A01G448900 chrUn 96.548 956 32 1 2513 3467 171296049 171297004 0.000000e+00 1581.0
22 TraesCS4A01G448900 chrUn 97.068 307 3 3 3709 4015 64851042 64851342 2.850000e-141 512.0
23 TraesCS4A01G448900 chrUn 97.651 298 2 2 3718 4015 183973847 183973555 1.330000e-139 507.0
24 TraesCS4A01G448900 chrUn 97.966 295 1 2 3718 4012 240452410 240452699 1.330000e-139 507.0
25 TraesCS4A01G448900 chrUn 97.651 298 2 2 3718 4015 340121035 340121327 1.330000e-139 507.0
26 TraesCS4A01G448900 chrUn 97.651 298 2 2 3718 4015 363258422 363258130 1.330000e-139 507.0
27 TraesCS4A01G448900 chrUn 86.874 419 27 12 3718 4136 10694051 10694441 1.060000e-120 444.0
28 TraesCS4A01G448900 chrUn 82.900 538 41 26 968 1464 341583918 341584445 1.770000e-118 436.0
29 TraesCS4A01G448900 chrUn 94.262 244 14 0 3474 3717 358634310 358634553 1.400000e-99 374.0
30 TraesCS4A01G448900 chrUn 93.852 244 15 0 3474 3717 340740872 340740629 6.530000e-98 368.0
31 TraesCS4A01G448900 chrUn 98.561 139 2 0 1843 1981 171292781 171292919 3.190000e-61 246.0
32 TraesCS4A01G448900 chrUn 98.561 139 2 0 1843 1981 361064885 361065023 3.190000e-61 246.0
33 TraesCS4A01G448900 chrUn 98.561 139 2 0 1843 1981 384286603 384286741 3.190000e-61 246.0
34 TraesCS4A01G448900 chrUn 97.842 139 3 0 1843 1981 386098689 386098551 1.490000e-59 241.0
35 TraesCS4A01G448900 chrUn 100.000 103 0 0 4034 4136 6024551 6024653 1.520000e-44 191.0
36 TraesCS4A01G448900 chrUn 100.000 103 0 0 4034 4136 64721682 64721580 1.520000e-44 191.0
37 TraesCS4A01G448900 chrUn 100.000 103 0 0 4034 4136 64728972 64728870 1.520000e-44 191.0
38 TraesCS4A01G448900 chrUn 100.000 103 0 0 4034 4136 64851544 64851646 1.520000e-44 191.0
39 TraesCS4A01G448900 chrUn 100.000 103 0 0 4034 4136 83553299 83553401 1.520000e-44 191.0
40 TraesCS4A01G448900 chrUn 100.000 103 0 0 4034 4136 83555714 83555816 1.520000e-44 191.0
41 TraesCS4A01G448900 chrUn 100.000 103 0 0 4034 4136 83561155 83561257 1.520000e-44 191.0
42 TraesCS4A01G448900 chrUn 100.000 103 0 0 4034 4136 207813483 207813381 1.520000e-44 191.0
43 TraesCS4A01G448900 chrUn 86.986 146 16 3 1837 1980 416902576 416902720 1.190000e-35 161.0
44 TraesCS4A01G448900 chrUn 83.810 105 9 4 803 907 50595202 50595106 4.400000e-15 93.5
45 TraesCS4A01G448900 chr6A 96.350 959 34 1 2513 3470 134944353 134945311 0.000000e+00 1576.0
46 TraesCS4A01G448900 chr4B 95.950 963 38 1 2513 3474 601296667 601295705 0.000000e+00 1561.0
47 TraesCS4A01G448900 chr4B 95.031 161 7 1 1818 1977 130635165 130635325 6.860000e-63 252.0
48 TraesCS4A01G448900 chr4B 94.828 116 6 0 203 318 620055591 620055706 9.130000e-42 182.0
49 TraesCS4A01G448900 chr4B 92.373 118 8 1 203 319 10516431 10516314 2.560000e-37 167.0
50 TraesCS4A01G448900 chr2A 95.535 963 41 2 2513 3474 77191660 77190699 0.000000e+00 1539.0
51 TraesCS4A01G448900 chr2A 98.276 116 2 0 203 318 688616601 688616716 1.950000e-48 204.0
52 TraesCS4A01G448900 chr2A 94.958 119 6 0 200 318 767808175 767808293 1.960000e-43 187.0
53 TraesCS4A01G448900 chr2B 95.431 963 38 4 2513 3473 667256995 667256037 0.000000e+00 1530.0
54 TraesCS4A01G448900 chr2B 95.758 165 4 3 1818 1981 796324821 796324659 3.170000e-66 263.0
55 TraesCS4A01G448900 chr2B 94.545 165 8 1 1818 1981 667257761 667257597 1.910000e-63 254.0
56 TraesCS4A01G448900 chr7A 85.270 869 50 29 779 1599 17395384 17394546 0.000000e+00 824.0
57 TraesCS4A01G448900 chr7A 98.993 298 3 0 3718 4015 664278787 664278490 6.090000e-148 534.0
58 TraesCS4A01G448900 chr7A 95.935 246 10 0 3472 3717 17394294 17394049 2.320000e-107 399.0
59 TraesCS4A01G448900 chr7A 83.406 458 26 13 319 768 17396058 17395643 3.020000e-101 379.0
60 TraesCS4A01G448900 chr7A 91.903 247 20 0 3472 3718 18316321 18316567 3.060000e-91 346.0
61 TraesCS4A01G448900 chr7A 96.040 202 7 1 1595 1795 17394486 17394285 1.110000e-85 327.0
62 TraesCS4A01G448900 chr7A 87.745 204 15 4 8 203 17396250 17396049 3.220000e-56 230.0
63 TraesCS4A01G448900 chr7A 93.548 124 7 1 198 320 641014082 641014205 2.540000e-42 183.0
64 TraesCS4A01G448900 chr7A 94.828 116 5 1 204 318 736354348 736354233 3.280000e-41 180.0
65 TraesCS4A01G448900 chr7A 92.188 128 6 4 1110 1236 17867727 17867603 1.180000e-40 178.0
66 TraesCS4A01G448900 chr7A 93.860 114 6 1 206 318 674005776 674005889 1.980000e-38 171.0
67 TraesCS4A01G448900 chr7A 90.164 122 12 0 1115 1236 18037260 18037139 4.280000e-35 159.0
68 TraesCS4A01G448900 chr7A 82.778 180 27 3 1616 1795 18316155 18316330 1.540000e-34 158.0
69 TraesCS4A01G448900 chr7A 86.885 122 16 0 410 531 17398598 17398477 2.010000e-28 137.0
70 TraesCS4A01G448900 chr7A 90.000 50 3 2 594 643 17445590 17445543 3.450000e-06 63.9
71 TraesCS4A01G448900 chr5A 97.651 298 7 0 3718 4015 700810405 700810108 2.850000e-141 512.0
72 TraesCS4A01G448900 chr5A 96.350 137 5 0 1845 1981 344340602 344340466 4.160000e-55 226.0
73 TraesCS4A01G448900 chr5A 96.970 66 2 0 253 318 34848131 34848066 1.220000e-20 111.0
74 TraesCS4A01G448900 chr1A 97.651 298 7 0 3718 4015 464906708 464907005 2.850000e-141 512.0
75 TraesCS4A01G448900 chr1A 95.783 166 4 3 1818 1981 50134767 50134931 8.820000e-67 265.0
76 TraesCS4A01G448900 chr1A 93.293 164 9 2 1815 1977 78541586 78541748 1.490000e-59 241.0
77 TraesCS4A01G448900 chr1A 95.270 148 7 0 1830 1977 78540002 78540149 6.910000e-58 235.0
78 TraesCS4A01G448900 chr1A 98.291 117 2 0 203 319 371408225 371408341 5.420000e-49 206.0
79 TraesCS4A01G448900 chr3B 97.360 303 3 1 3718 4015 545028323 545028625 1.030000e-140 510.0
80 TraesCS4A01G448900 chr3B 95.152 165 7 1 1818 1981 750466083 750466247 4.100000e-65 259.0
81 TraesCS4A01G448900 chr7D 93.089 246 17 0 3472 3717 18003553 18003308 1.090000e-95 361.0
82 TraesCS4A01G448900 chr7D 79.355 155 31 1 1642 1795 18003698 18003544 1.570000e-19 108.0
83 TraesCS4A01G448900 chr7D 100.000 29 0 0 288 316 598529706 598529734 2.000000e-03 54.7
84 TraesCS4A01G448900 chr6B 96.364 165 4 2 1818 1981 279182705 279182542 1.890000e-68 270.0
85 TraesCS4A01G448900 chr6B 96.875 160 4 1 1818 1976 705631781 705631622 2.450000e-67 267.0
86 TraesCS4A01G448900 chr6B 98.291 117 2 0 201 317 204112992 204113108 5.420000e-49 206.0
87 TraesCS4A01G448900 chr6B 94.872 117 5 1 203 318 712178734 712178618 9.130000e-42 182.0
88 TraesCS4A01G448900 chr5B 93.902 164 9 1 1815 1977 392066823 392066986 3.190000e-61 246.0
89 TraesCS4A01G448900 chr5B 93.902 164 9 1 1815 1977 392074214 392074377 3.190000e-61 246.0
90 TraesCS4A01G448900 chr5B 93.902 164 9 1 1815 1977 392114638 392114801 3.190000e-61 246.0
91 TraesCS4A01G448900 chr5B 95.763 118 4 1 203 319 550918214 550918331 5.460000e-44 189.0
92 TraesCS4A01G448900 chr3A 94.017 117 7 0 202 318 439913218 439913334 1.180000e-40 178.0
93 TraesCS4A01G448900 chr1D 100.000 29 0 0 288 316 255126724 255126752 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G448900 chr4A 715296285 715300420 4135 False 3329.500000 3659 100.0000 1 4136 2 chr4A.!!$F9 4135
1 TraesCS4A01G448900 chr4A 543415638 543416604 966 False 1559.000000 1559 95.7640 2513 3479 1 chr4A.!!$F1 966
2 TraesCS4A01G448900 chr4A 714757806 714758333 527 False 436.000000 436 82.9000 968 1464 1 chr4A.!!$F3 496
3 TraesCS4A01G448900 chr4A 714520032 714521266 1234 False 360.000000 396 91.4575 964 3717 2 chr4A.!!$F6 2753
4 TraesCS4A01G448900 chr4A 714564579 714565773 1194 False 286.000000 401 91.3135 1099 3728 2 chr4A.!!$F7 2629
5 TraesCS4A01G448900 chr1B 36282475 36284015 1540 True 945.500000 1604 98.2060 1821 3476 2 chr1B.!!$R1 1655
6 TraesCS4A01G448900 chr1B 688125305 688126921 1616 False 936.000000 1591 97.6025 1818 3470 2 chr1B.!!$F1 1652
7 TraesCS4A01G448900 chr7B 120788751 120790265 1514 True 942.000000 1592 97.8215 1818 3472 2 chr7B.!!$R1 1654
8 TraesCS4A01G448900 chrUn 171292781 171297004 4223 False 913.500000 1581 97.5545 1843 3467 2 chrUn.!!$F13 1624
9 TraesCS4A01G448900 chrUn 341583918 341584445 527 False 436.000000 436 82.9000 968 1464 1 chrUn.!!$F6 496
10 TraesCS4A01G448900 chrUn 64851042 64851646 604 False 351.500000 512 98.5340 3709 4136 2 chrUn.!!$F11 427
11 TraesCS4A01G448900 chr6A 134944353 134945311 958 False 1576.000000 1576 96.3500 2513 3470 1 chr6A.!!$F1 957
12 TraesCS4A01G448900 chr4B 601295705 601296667 962 True 1561.000000 1561 95.9500 2513 3474 1 chr4B.!!$R2 961
13 TraesCS4A01G448900 chr2A 77190699 77191660 961 True 1539.000000 1539 95.5350 2513 3474 1 chr2A.!!$R1 961
14 TraesCS4A01G448900 chr2B 667256037 667257761 1724 True 892.000000 1530 94.9880 1818 3473 2 chr2B.!!$R2 1655
15 TraesCS4A01G448900 chr7A 17394049 17398598 4549 True 382.666667 824 89.2135 8 3717 6 chr7A.!!$R6 3709
16 TraesCS4A01G448900 chr1A 78540002 78541748 1746 False 238.000000 241 94.2815 1815 1977 2 chr1A.!!$F4 162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 3544 0.098376 GAGCAGTACATTGCAGCAGC 59.902 55.0 9.5 0.0 46.47 5.25 F
941 3545 0.322277 AGCAGTACATTGCAGCAGCT 60.322 50.0 9.5 0.0 46.47 4.24 F
1283 3947 0.674581 TCTGCCATGCTCTGTTTCCG 60.675 55.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1799 4796 2.626266 GGGGGAATTCTGTTTTCAACGT 59.374 45.455 5.23 0.0 0.0 3.99 R
1800 4797 3.297830 GGGGGAATTCTGTTTTCAACG 57.702 47.619 5.23 0.0 0.0 4.10 R
3191 9592 0.687427 ACACTGCTGCCAAGGGTTTT 60.687 50.000 0.00 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.109847 TTGACCTTGTGCAGAACCC 57.890 52.632 0.00 0.00 0.00 4.11
19 20 0.257328 TTGACCTTGTGCAGAACCCA 59.743 50.000 0.00 0.00 0.00 4.51
21 22 0.465460 GACCTTGTGCAGAACCCACA 60.465 55.000 0.00 0.00 41.11 4.17
40 2380 7.889873 CCCACAAGGTATATAAAAACATGGA 57.110 36.000 0.00 0.00 0.00 3.41
43 2383 9.581099 CCACAAGGTATATAAAAACATGGAAAC 57.419 33.333 0.00 0.00 0.00 2.78
97 2437 9.045223 TCTAATTCGAATATCCATTTGTGAGTG 57.955 33.333 11.83 0.00 0.00 3.51
161 2509 2.590821 GAGTATGCATGGGAGCCAAAT 58.409 47.619 10.16 0.00 36.95 2.32
193 2541 9.597170 CCCTCACTCATATATTCATGTTCATAG 57.403 37.037 0.00 0.00 0.00 2.23
203 2551 5.605564 TTCATGTTCATAGTTCACAACGG 57.394 39.130 0.00 0.00 36.23 4.44
204 2552 4.888917 TCATGTTCATAGTTCACAACGGA 58.111 39.130 0.00 0.00 36.23 4.69
205 2553 4.929211 TCATGTTCATAGTTCACAACGGAG 59.071 41.667 0.00 0.00 36.23 4.63
206 2554 3.659786 TGTTCATAGTTCACAACGGAGG 58.340 45.455 0.00 0.00 36.23 4.30
207 2555 3.070446 TGTTCATAGTTCACAACGGAGGT 59.930 43.478 0.00 0.00 36.23 3.85
208 2556 3.313012 TCATAGTTCACAACGGAGGTG 57.687 47.619 0.00 0.00 37.60 4.00
209 2557 2.894765 TCATAGTTCACAACGGAGGTGA 59.105 45.455 2.49 2.49 43.12 4.02
213 2561 2.178912 TTCACAACGGAGGTGAATCC 57.821 50.000 12.75 0.00 46.95 3.01
214 2562 1.697432 TTCACAACGGAGGTGAATCCT 59.303 47.619 12.75 0.00 46.95 3.24
215 2563 2.549992 TTCACAACGGAGGTGAATCCTG 60.550 50.000 12.75 0.00 46.95 3.86
216 2564 5.076457 TTCACAACGGAGGTGAATCCTGT 62.076 47.826 12.75 0.00 46.95 4.00
217 2565 5.779061 TTCACAACGGAGGTGAATCCTGTA 61.779 45.833 12.75 0.00 46.95 2.74
218 2566 7.751450 TTCACAACGGAGGTGAATCCTGTAC 62.751 48.000 12.75 0.00 46.95 2.90
223 2571 1.192428 AGGTGAATCCTGTACGACCC 58.808 55.000 0.00 0.00 46.19 4.46
224 2572 0.179119 GGTGAATCCTGTACGACCCG 60.179 60.000 0.00 0.00 0.00 5.28
225 2573 0.804933 GTGAATCCTGTACGACCCGC 60.805 60.000 0.00 0.00 0.00 6.13
226 2574 0.968901 TGAATCCTGTACGACCCGCT 60.969 55.000 0.00 0.00 0.00 5.52
227 2575 0.175073 GAATCCTGTACGACCCGCTT 59.825 55.000 0.00 0.00 0.00 4.68
228 2576 0.108329 AATCCTGTACGACCCGCTTG 60.108 55.000 0.00 0.00 0.00 4.01
229 2577 1.255667 ATCCTGTACGACCCGCTTGT 61.256 55.000 0.00 0.00 0.00 3.16
230 2578 1.736645 CCTGTACGACCCGCTTGTG 60.737 63.158 0.00 0.00 0.00 3.33
231 2579 1.287815 CTGTACGACCCGCTTGTGA 59.712 57.895 0.00 0.00 0.00 3.58
232 2580 0.732880 CTGTACGACCCGCTTGTGAG 60.733 60.000 0.00 0.00 0.00 3.51
233 2581 1.174078 TGTACGACCCGCTTGTGAGA 61.174 55.000 0.00 0.00 0.00 3.27
234 2582 0.456312 GTACGACCCGCTTGTGAGAG 60.456 60.000 0.00 0.00 0.00 3.20
235 2583 0.607217 TACGACCCGCTTGTGAGAGA 60.607 55.000 0.00 0.00 0.00 3.10
236 2584 1.153939 CGACCCGCTTGTGAGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
237 2585 1.446966 GACCCGCTTGTGAGAGAGC 60.447 63.158 0.00 0.00 35.58 4.09
238 2586 1.882989 GACCCGCTTGTGAGAGAGCT 61.883 60.000 0.00 0.00 36.76 4.09
239 2587 1.153667 CCCGCTTGTGAGAGAGCTC 60.154 63.158 5.27 5.27 41.67 4.09
240 2588 1.153667 CCGCTTGTGAGAGAGCTCC 60.154 63.158 10.93 1.70 40.55 4.70
241 2589 1.603236 CCGCTTGTGAGAGAGCTCCT 61.603 60.000 10.93 7.30 40.55 3.69
242 2590 0.179140 CGCTTGTGAGAGAGCTCCTC 60.179 60.000 19.58 19.58 40.55 3.71
243 2591 0.179140 GCTTGTGAGAGAGCTCCTCG 60.179 60.000 20.44 11.50 46.49 4.63
244 2592 1.173043 CTTGTGAGAGAGCTCCTCGT 58.827 55.000 20.44 0.83 46.49 4.18
245 2593 0.884514 TTGTGAGAGAGCTCCTCGTG 59.115 55.000 20.44 0.00 46.49 4.35
246 2594 0.962855 TGTGAGAGAGCTCCTCGTGG 60.963 60.000 20.44 0.00 46.49 4.94
247 2595 1.379176 TGAGAGAGCTCCTCGTGGG 60.379 63.158 20.44 0.00 46.49 4.61
248 2596 2.043450 AGAGAGCTCCTCGTGGGG 60.043 66.667 10.93 0.24 46.49 4.96
249 2597 2.363147 GAGAGCTCCTCGTGGGGT 60.363 66.667 10.93 0.93 35.83 4.95
250 2598 2.681778 AGAGCTCCTCGTGGGGTG 60.682 66.667 10.93 0.00 35.83 4.61
251 2599 3.775654 GAGCTCCTCGTGGGGTGG 61.776 72.222 0.87 0.00 35.83 4.61
273 2621 4.517934 CCTGCCAGCCTCCCCATG 62.518 72.222 0.00 0.00 0.00 3.66
309 2657 3.930504 GACCCGGTCGTACAGGAT 58.069 61.111 0.65 0.00 35.32 3.24
310 2658 2.196319 GACCCGGTCGTACAGGATT 58.804 57.895 0.65 0.00 35.32 3.01
311 2659 1.392589 GACCCGGTCGTACAGGATTA 58.607 55.000 0.65 0.00 35.32 1.75
312 2660 1.959282 GACCCGGTCGTACAGGATTAT 59.041 52.381 0.65 0.00 35.32 1.28
313 2661 2.363359 GACCCGGTCGTACAGGATTATT 59.637 50.000 0.65 0.00 35.32 1.40
314 2662 2.767960 ACCCGGTCGTACAGGATTATTT 59.232 45.455 0.00 0.00 35.32 1.40
315 2663 3.198417 ACCCGGTCGTACAGGATTATTTT 59.802 43.478 0.00 0.00 35.32 1.82
316 2664 3.558418 CCCGGTCGTACAGGATTATTTTG 59.442 47.826 0.00 0.00 35.32 2.44
317 2665 3.001939 CCGGTCGTACAGGATTATTTTGC 59.998 47.826 0.00 0.00 35.32 3.68
344 2692 2.301577 ACGAATCTGGCAAGCTAGAC 57.698 50.000 10.38 0.00 36.40 2.59
346 2694 1.576356 GAATCTGGCAAGCTAGACCG 58.424 55.000 10.38 0.00 36.40 4.79
369 2720 5.077424 GTCTCAACGCAACTATTAAAACCG 58.923 41.667 0.00 0.00 0.00 4.44
378 2729 4.657075 ACTATTAAAACCGCGACAAGTG 57.343 40.909 8.23 0.00 0.00 3.16
380 2731 3.974871 ATTAAAACCGCGACAAGTGTT 57.025 38.095 8.23 0.00 0.00 3.32
388 2739 2.732500 CCGCGACAAGTGTTATGTAACA 59.267 45.455 8.23 1.62 43.32 2.41
395 2746 5.560724 ACAAGTGTTATGTAACAGATGGCT 58.439 37.500 16.10 5.51 45.82 4.75
422 2773 6.555315 CCTCTTGAACGGATATTTTTCTTGG 58.445 40.000 0.00 0.00 0.00 3.61
423 2774 5.949735 TCTTGAACGGATATTTTTCTTGGC 58.050 37.500 0.00 0.00 0.00 4.52
424 2775 5.710099 TCTTGAACGGATATTTTTCTTGGCT 59.290 36.000 0.00 0.00 0.00 4.75
425 2776 6.882140 TCTTGAACGGATATTTTTCTTGGCTA 59.118 34.615 0.00 0.00 0.00 3.93
426 2777 7.392113 TCTTGAACGGATATTTTTCTTGGCTAA 59.608 33.333 0.00 0.00 0.00 3.09
427 2778 7.455641 TGAACGGATATTTTTCTTGGCTAAA 57.544 32.000 0.00 0.00 0.00 1.85
428 2779 7.535139 TGAACGGATATTTTTCTTGGCTAAAG 58.465 34.615 0.00 0.00 37.22 1.85
429 2780 5.891451 ACGGATATTTTTCTTGGCTAAAGC 58.109 37.500 0.00 0.00 35.69 3.51
430 2781 5.417580 ACGGATATTTTTCTTGGCTAAAGCA 59.582 36.000 4.07 0.00 44.36 3.91
431 2782 6.071616 ACGGATATTTTTCTTGGCTAAAGCAA 60.072 34.615 4.07 0.00 44.36 3.91
432 2783 6.811170 CGGATATTTTTCTTGGCTAAAGCAAA 59.189 34.615 4.07 0.00 44.36 3.68
433 2784 7.330700 CGGATATTTTTCTTGGCTAAAGCAAAA 59.669 33.333 4.07 10.64 42.55 2.44
434 2785 8.443160 GGATATTTTTCTTGGCTAAAGCAAAAC 58.557 33.333 4.07 2.51 41.64 2.43
435 2786 5.710613 TTTTTCTTGGCTAAAGCAAAACG 57.289 34.783 4.07 0.00 44.36 3.60
436 2787 4.640789 TTTCTTGGCTAAAGCAAAACGA 57.359 36.364 4.07 0.00 44.36 3.85
437 2788 4.846779 TTCTTGGCTAAAGCAAAACGAT 57.153 36.364 4.07 0.00 44.36 3.73
438 2789 4.419522 TCTTGGCTAAAGCAAAACGATC 57.580 40.909 4.07 0.00 44.36 3.69
439 2790 2.892373 TGGCTAAAGCAAAACGATCG 57.108 45.000 14.88 14.88 44.36 3.69
440 2791 2.418692 TGGCTAAAGCAAAACGATCGA 58.581 42.857 24.34 0.00 44.36 3.59
441 2792 2.809119 TGGCTAAAGCAAAACGATCGAA 59.191 40.909 24.34 0.00 44.36 3.71
442 2793 3.120338 TGGCTAAAGCAAAACGATCGAAG 60.120 43.478 24.34 9.16 44.36 3.79
443 2794 3.120304 GGCTAAAGCAAAACGATCGAAGT 60.120 43.478 24.34 3.27 44.36 3.01
491 2842 3.311596 GGTATTCCCGTGTTGTGAATAGC 59.688 47.826 0.00 0.00 40.26 2.97
495 2846 2.029200 TCCCGTGTTGTGAATAGCGTTA 60.029 45.455 0.00 0.00 0.00 3.18
496 2847 2.347452 CCCGTGTTGTGAATAGCGTTAG 59.653 50.000 0.00 0.00 0.00 2.34
497 2848 3.247442 CCGTGTTGTGAATAGCGTTAGA 58.753 45.455 0.00 0.00 0.00 2.10
498 2849 3.863424 CCGTGTTGTGAATAGCGTTAGAT 59.137 43.478 0.00 0.00 0.00 1.98
499 2850 4.026804 CCGTGTTGTGAATAGCGTTAGATC 60.027 45.833 0.00 0.00 0.00 2.75
500 2851 4.316446 CGTGTTGTGAATAGCGTTAGATCG 60.316 45.833 0.00 0.00 0.00 3.69
501 2852 4.561606 GTGTTGTGAATAGCGTTAGATCGT 59.438 41.667 0.00 0.00 0.00 3.73
502 2853 4.561213 TGTTGTGAATAGCGTTAGATCGTG 59.439 41.667 0.00 0.00 0.00 4.35
503 2854 4.365899 TGTGAATAGCGTTAGATCGTGT 57.634 40.909 0.00 0.00 0.00 4.49
504 2855 4.102649 TGTGAATAGCGTTAGATCGTGTG 58.897 43.478 0.00 0.00 0.00 3.82
505 2856 4.142556 TGTGAATAGCGTTAGATCGTGTGA 60.143 41.667 0.00 0.00 0.00 3.58
506 2857 4.796830 GTGAATAGCGTTAGATCGTGTGAA 59.203 41.667 0.00 0.00 0.00 3.18
507 2858 4.796830 TGAATAGCGTTAGATCGTGTGAAC 59.203 41.667 0.00 0.00 0.00 3.18
508 2859 1.992170 AGCGTTAGATCGTGTGAACC 58.008 50.000 0.00 0.00 0.00 3.62
509 2860 0.997196 GCGTTAGATCGTGTGAACCC 59.003 55.000 0.00 0.00 0.00 4.11
510 2861 1.670674 GCGTTAGATCGTGTGAACCCA 60.671 52.381 0.00 0.00 0.00 4.51
511 2862 2.679450 CGTTAGATCGTGTGAACCCAA 58.321 47.619 0.00 0.00 0.00 4.12
512 2863 3.061322 CGTTAGATCGTGTGAACCCAAA 58.939 45.455 0.00 0.00 0.00 3.28
513 2864 3.122948 CGTTAGATCGTGTGAACCCAAAG 59.877 47.826 0.00 0.00 0.00 2.77
514 2865 4.312443 GTTAGATCGTGTGAACCCAAAGA 58.688 43.478 0.00 0.00 0.00 2.52
515 2866 2.767505 AGATCGTGTGAACCCAAAGAC 58.232 47.619 0.00 0.00 0.00 3.01
516 2867 2.104111 AGATCGTGTGAACCCAAAGACA 59.896 45.455 0.00 0.00 0.00 3.41
527 2878 5.588648 TGAACCCAAAGACACTGAAGTAAAG 59.411 40.000 0.00 0.00 0.00 1.85
564 2915 3.007920 AGCTGGGCCAGAGAGGTG 61.008 66.667 37.07 10.25 40.61 4.00
586 2937 2.818432 CAGATCATTATTGCCCCTCTGC 59.182 50.000 0.00 0.00 0.00 4.26
616 2967 6.090493 GGTCACGAGTAAAACAGTAAGATTCC 59.910 42.308 0.00 0.00 0.00 3.01
645 2996 6.147864 TGCTCTATGCTTGTTTGTTTTTCT 57.852 33.333 0.00 0.00 43.37 2.52
677 3028 8.099704 GCGCTAAAATACTTAATTTGTTTTCCG 58.900 33.333 0.00 0.00 37.85 4.30
761 3117 1.882623 GGTTGCAGGAGGAGACAAAAG 59.117 52.381 0.00 0.00 0.00 2.27
763 3119 2.952310 GTTGCAGGAGGAGACAAAAGTT 59.048 45.455 0.00 0.00 0.00 2.66
764 3120 2.575532 TGCAGGAGGAGACAAAAGTTG 58.424 47.619 0.00 0.00 0.00 3.16
765 3121 1.268079 GCAGGAGGAGACAAAAGTTGC 59.732 52.381 0.00 0.00 0.00 4.17
768 3124 3.571401 CAGGAGGAGACAAAAGTTGCAAT 59.429 43.478 0.59 0.00 0.00 3.56
769 3125 3.823304 AGGAGGAGACAAAAGTTGCAATC 59.177 43.478 0.59 0.00 0.00 2.67
770 3126 3.569701 GGAGGAGACAAAAGTTGCAATCA 59.430 43.478 0.59 0.00 0.00 2.57
771 3127 4.320788 GGAGGAGACAAAAGTTGCAATCAG 60.321 45.833 0.59 0.00 0.00 2.90
776 3379 6.703165 GGAGACAAAAGTTGCAATCAGAAAAT 59.297 34.615 0.59 0.00 0.00 1.82
777 3380 7.306983 GGAGACAAAAGTTGCAATCAGAAAATG 60.307 37.037 0.59 0.00 0.00 2.32
792 3395 8.930846 ATCAGAAAATGAGAAAGAGAAGGAAA 57.069 30.769 0.00 0.00 42.53 3.13
793 3396 8.752005 TCAGAAAATGAGAAAGAGAAGGAAAA 57.248 30.769 0.00 0.00 32.77 2.29
794 3397 8.844244 TCAGAAAATGAGAAAGAGAAGGAAAAG 58.156 33.333 0.00 0.00 32.77 2.27
827 3431 2.606272 GCAATTAGCTGGAAATGCAAGC 59.394 45.455 4.69 0.00 41.15 4.01
845 3449 3.991051 CACCGCGTGGGACTGACT 61.991 66.667 21.14 0.00 40.75 3.41
846 3450 3.681835 ACCGCGTGGGACTGACTC 61.682 66.667 21.14 0.00 40.75 3.36
847 3451 3.680786 CCGCGTGGGACTGACTCA 61.681 66.667 7.26 0.00 38.47 3.41
848 3452 2.430921 CGCGTGGGACTGACTCAC 60.431 66.667 0.00 0.00 45.70 3.51
849 3453 2.920645 CGCGTGGGACTGACTCACT 61.921 63.158 8.41 0.00 46.85 3.41
850 3454 1.373497 GCGTGGGACTGACTCACTG 60.373 63.158 8.41 3.71 46.85 3.66
851 3455 1.806461 GCGTGGGACTGACTCACTGA 61.806 60.000 8.41 0.00 46.85 3.41
889 3493 2.397751 GTGCACTCACTGTTGCTGT 58.602 52.632 10.32 0.00 40.03 4.40
890 3494 0.734889 GTGCACTCACTGTTGCTGTT 59.265 50.000 10.32 0.00 40.03 3.16
907 3511 0.602638 GTTCGTCCAGTCCATGCACA 60.603 55.000 0.00 0.00 0.00 4.57
909 3513 0.107643 TCGTCCAGTCCATGCACAAA 59.892 50.000 0.00 0.00 0.00 2.83
915 3519 0.540365 AGTCCATGCACAAACCCCAG 60.540 55.000 0.00 0.00 0.00 4.45
918 3522 1.114722 CCATGCACAAACCCCAGTGT 61.115 55.000 0.00 0.00 38.02 3.55
922 3526 0.465460 GCACAAACCCCAGTGTGAGA 60.465 55.000 7.93 0.00 46.56 3.27
923 3527 1.597742 CACAAACCCCAGTGTGAGAG 58.402 55.000 0.00 0.00 46.56 3.20
926 3530 0.109342 AAACCCCAGTGTGAGAGCAG 59.891 55.000 0.00 0.00 0.00 4.24
929 3533 0.247736 CCCCAGTGTGAGAGCAGTAC 59.752 60.000 0.00 0.00 0.00 2.73
930 3534 0.969149 CCCAGTGTGAGAGCAGTACA 59.031 55.000 0.00 0.00 0.00 2.90
940 3544 0.098376 GAGCAGTACATTGCAGCAGC 59.902 55.000 9.50 0.00 46.47 5.25
941 3545 0.322277 AGCAGTACATTGCAGCAGCT 60.322 50.000 9.50 0.00 46.47 4.24
973 3603 8.454106 AGATTATATTGTCGGCTCAATTATTGC 58.546 33.333 0.00 0.00 38.68 3.56
983 3613 3.018856 CTCAATTATTGCACCAGGAGCA 58.981 45.455 7.60 7.60 40.85 4.26
1035 3665 3.341857 AACGCTCGTAGCTATCTCTTG 57.658 47.619 0.00 0.00 39.60 3.02
1092 3722 4.697514 TGCATTCTAATCTAGTGCCAGAC 58.302 43.478 0.00 0.00 35.03 3.51
1161 3814 3.650298 ATCCATGCTGGGCGCTGTT 62.650 57.895 7.64 0.00 38.32 3.16
1270 3934 2.822561 CACTCACTACTCTTCTCTGCCA 59.177 50.000 0.00 0.00 0.00 4.92
1283 3947 0.674581 TCTGCCATGCTCTGTTTCCG 60.675 55.000 0.00 0.00 0.00 4.30
1298 3962 0.899019 TTCCGTCGATCCATTCACCA 59.101 50.000 0.00 0.00 0.00 4.17
1390 4071 1.542492 ATTGCTCAGCCCTTCTTGTG 58.458 50.000 0.00 0.00 0.00 3.33
1518 4415 4.997565 ACCAGAATGTTTTTATGCATCCG 58.002 39.130 0.19 0.00 0.00 4.18
1521 4418 5.868801 CCAGAATGTTTTTATGCATCCGTTT 59.131 36.000 0.19 0.00 0.00 3.60
1524 4421 7.951565 CAGAATGTTTTTATGCATCCGTTTTTC 59.048 33.333 0.19 0.36 0.00 2.29
1570 4475 2.231215 AGCCTCATAGACGTTGCATC 57.769 50.000 0.00 0.00 0.00 3.91
1590 4561 2.294233 TCTGTTCTGCTTTGTTGCATCC 59.706 45.455 0.00 0.00 42.48 3.51
1591 4562 2.295349 CTGTTCTGCTTTGTTGCATCCT 59.705 45.455 0.00 0.00 42.48 3.24
1593 4564 3.243501 TGTTCTGCTTTGTTGCATCCTTC 60.244 43.478 0.00 0.00 42.48 3.46
1660 4657 4.764823 TCGTTTGGCAGGTTTATGAAAGAT 59.235 37.500 0.00 0.00 0.00 2.40
1795 4792 7.068702 AGGATTGCCTTGATGAATTTATGGTA 58.931 34.615 0.00 0.00 43.90 3.25
1796 4793 7.731688 AGGATTGCCTTGATGAATTTATGGTAT 59.268 33.333 0.00 0.00 43.90 2.73
1797 4794 8.370182 GGATTGCCTTGATGAATTTATGGTATT 58.630 33.333 0.00 0.00 0.00 1.89
1798 4795 9.199982 GATTGCCTTGATGAATTTATGGTATTG 57.800 33.333 0.00 0.00 0.00 1.90
1799 4796 7.894753 TGCCTTGATGAATTTATGGTATTGA 57.105 32.000 0.00 0.00 0.00 2.57
1800 4797 7.715657 TGCCTTGATGAATTTATGGTATTGAC 58.284 34.615 0.00 0.00 0.00 3.18
1802 4799 7.468631 GCCTTGATGAATTTATGGTATTGACGT 60.469 37.037 0.00 0.00 0.00 4.34
1803 4800 8.405531 CCTTGATGAATTTATGGTATTGACGTT 58.594 33.333 0.00 0.00 0.00 3.99
1804 4801 9.225201 CTTGATGAATTTATGGTATTGACGTTG 57.775 33.333 0.00 0.00 0.00 4.10
1806 4803 8.951243 TGATGAATTTATGGTATTGACGTTGAA 58.049 29.630 0.00 0.00 0.00 2.69
1807 4804 9.781834 GATGAATTTATGGTATTGACGTTGAAA 57.218 29.630 0.00 0.00 0.00 2.69
1809 4806 9.400638 TGAATTTATGGTATTGACGTTGAAAAC 57.599 29.630 0.00 0.00 45.31 2.43
2969 9369 0.597637 CGTCGTGCTGTCCTCACTTT 60.598 55.000 0.00 0.00 32.54 2.66
2970 9370 1.335597 CGTCGTGCTGTCCTCACTTTA 60.336 52.381 0.00 0.00 32.54 1.85
3191 9592 2.747460 CTCGTCGTGTACCGGGGA 60.747 66.667 6.32 0.00 37.11 4.81
3208 9609 1.115326 GGAAAACCCTTGGCAGCAGT 61.115 55.000 0.00 0.00 0.00 4.40
3234 9635 0.872021 ATCGTCGCGATCCTTCTTGC 60.872 55.000 14.06 0.00 43.45 4.01
3275 9676 2.003196 CTTCGAAGTCTTGGAGCCTC 57.997 55.000 17.24 0.00 0.00 4.70
3279 9680 0.603569 GAAGTCTTGGAGCCTCGTGA 59.396 55.000 0.00 0.00 0.00 4.35
3316 9717 2.167861 GCGATCGCGAGGCTTCTTT 61.168 57.895 26.12 0.84 40.82 2.52
3478 9880 7.821595 GGAAACCCTTTTTCGGTAATTTATG 57.178 36.000 0.00 0.00 31.69 1.90
3480 9882 6.921486 AACCCTTTTTCGGTAATTTATGGT 57.079 33.333 0.00 0.00 31.69 3.55
3481 9883 6.275494 ACCCTTTTTCGGTAATTTATGGTG 57.725 37.500 0.00 0.00 0.00 4.17
3482 9884 5.106442 CCCTTTTTCGGTAATTTATGGTGC 58.894 41.667 0.00 0.00 0.00 5.01
3483 9885 5.336849 CCCTTTTTCGGTAATTTATGGTGCA 60.337 40.000 0.00 0.00 0.00 4.57
3484 9886 6.337356 CCTTTTTCGGTAATTTATGGTGCAT 58.663 36.000 0.00 0.00 0.00 3.96
3485 9887 6.255453 CCTTTTTCGGTAATTTATGGTGCATG 59.745 38.462 0.00 0.00 0.00 4.06
3486 9888 5.906113 TTTCGGTAATTTATGGTGCATGT 57.094 34.783 0.00 0.00 0.00 3.21
3487 9889 4.891627 TCGGTAATTTATGGTGCATGTG 57.108 40.909 0.00 0.00 0.00 3.21
3488 9890 3.629855 TCGGTAATTTATGGTGCATGTGG 59.370 43.478 0.00 0.00 0.00 4.17
3489 9891 3.243367 CGGTAATTTATGGTGCATGTGGG 60.243 47.826 0.00 0.00 0.00 4.61
3490 9892 3.957497 GGTAATTTATGGTGCATGTGGGA 59.043 43.478 0.00 0.00 0.00 4.37
3491 9893 4.404073 GGTAATTTATGGTGCATGTGGGAA 59.596 41.667 0.00 0.00 0.00 3.97
3492 9894 4.741321 AATTTATGGTGCATGTGGGAAG 57.259 40.909 0.00 0.00 0.00 3.46
3493 9895 1.473258 TTATGGTGCATGTGGGAAGC 58.527 50.000 0.00 0.00 0.00 3.86
3494 9896 0.395586 TATGGTGCATGTGGGAAGCC 60.396 55.000 0.00 0.00 0.00 4.35
3495 9897 2.283101 GGTGCATGTGGGAAGCCA 60.283 61.111 0.00 0.00 0.00 4.75
3496 9898 2.345760 GGTGCATGTGGGAAGCCAG 61.346 63.158 0.00 0.00 0.00 4.85
3497 9899 1.303561 GTGCATGTGGGAAGCCAGA 60.304 57.895 0.00 0.00 0.00 3.86
3498 9900 1.001764 TGCATGTGGGAAGCCAGAG 60.002 57.895 0.00 0.00 0.00 3.35
3499 9901 2.413142 GCATGTGGGAAGCCAGAGC 61.413 63.158 0.00 0.00 40.32 4.09
3500 9902 1.001764 CATGTGGGAAGCCAGAGCA 60.002 57.895 0.00 0.00 43.56 4.26
3501 9903 1.030488 CATGTGGGAAGCCAGAGCAG 61.030 60.000 0.00 0.00 43.56 4.24
3502 9904 2.045536 GTGGGAAGCCAGAGCAGG 60.046 66.667 0.00 0.00 43.56 4.85
3503 9905 2.530151 TGGGAAGCCAGAGCAGGT 60.530 61.111 0.00 0.00 43.56 4.00
3504 9906 2.270527 GGGAAGCCAGAGCAGGTC 59.729 66.667 0.00 0.00 43.56 3.85
3505 9907 2.297129 GGGAAGCCAGAGCAGGTCT 61.297 63.158 0.00 0.00 43.56 3.85
3506 9908 1.220477 GGAAGCCAGAGCAGGTCTC 59.780 63.158 0.00 0.00 43.56 3.36
3507 9909 1.153667 GAAGCCAGAGCAGGTCTCG 60.154 63.158 0.00 0.00 46.44 4.04
3508 9910 1.599606 GAAGCCAGAGCAGGTCTCGA 61.600 60.000 0.00 0.00 46.44 4.04
3509 9911 1.882989 AAGCCAGAGCAGGTCTCGAC 61.883 60.000 0.00 0.00 46.44 4.20
3510 9912 2.487428 CCAGAGCAGGTCTCGACG 59.513 66.667 0.00 0.00 46.44 5.12
3511 9913 2.487428 CAGAGCAGGTCTCGACGG 59.513 66.667 0.00 0.00 46.44 4.79
3512 9914 3.444805 AGAGCAGGTCTCGACGGC 61.445 66.667 0.00 4.73 46.44 5.68
3559 9961 1.523154 TTGCCAGCCAAATCCGTGAC 61.523 55.000 0.00 0.00 0.00 3.67
3588 9990 3.675775 GCAAGAGTAGAAGAGGTGAGCAG 60.676 52.174 0.00 0.00 0.00 4.24
3672 10074 3.004419 TCCTACACGGAAGATATTCGCAG 59.996 47.826 0.00 0.00 39.40 5.18
3742 10144 4.550669 TGAAATCTGAGATGGGCTCTAGA 58.449 43.478 0.00 0.00 44.27 2.43
3909 10311 1.142965 GAAGAGAAGAGGCCCTCGC 59.857 63.158 4.80 1.57 35.36 5.03
4015 10417 2.202623 GAGCTCACACCTACGCGG 60.203 66.667 12.47 0.00 39.35 6.46
4016 10418 3.701604 GAGCTCACACCTACGCGGG 62.702 68.421 12.47 5.24 36.97 6.13
4017 10419 3.755628 GCTCACACCTACGCGGGA 61.756 66.667 12.47 0.00 36.97 5.14
4018 10420 3.077519 GCTCACACCTACGCGGGAT 62.078 63.158 12.47 0.00 36.97 3.85
4020 10422 0.806102 CTCACACCTACGCGGGATTG 60.806 60.000 12.47 4.65 36.97 2.67
4021 10423 1.216977 CACACCTACGCGGGATTGA 59.783 57.895 12.47 0.00 36.97 2.57
4022 10424 0.806102 CACACCTACGCGGGATTGAG 60.806 60.000 12.47 0.00 36.97 3.02
4023 10425 1.883084 CACCTACGCGGGATTGAGC 60.883 63.158 12.47 0.00 36.97 4.26
4024 10426 2.280186 CCTACGCGGGATTGAGCC 60.280 66.667 12.47 0.00 0.00 4.70
4025 10427 2.658593 CTACGCGGGATTGAGCCG 60.659 66.667 12.47 0.00 0.00 5.52
4026 10428 3.133767 CTACGCGGGATTGAGCCGA 62.134 63.158 12.47 0.00 0.00 5.54
4027 10429 3.133767 TACGCGGGATTGAGCCGAG 62.134 63.158 12.47 0.00 0.00 4.63
4032 10434 2.279784 GGATTGAGCCGAGCCGAG 60.280 66.667 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.465460 GTGGGTTCTGCACAAGGTCA 60.465 55.000 0.00 0.00 28.72 4.02
16 17 7.889873 TCCATGTTTTTATATACCTTGTGGG 57.110 36.000 0.00 0.00 41.89 4.61
17 18 9.581099 GTTTCCATGTTTTTATATACCTTGTGG 57.419 33.333 0.00 0.00 39.83 4.17
27 2367 9.895138 GGGTAGAGTAGTTTCCATGTTTTTATA 57.105 33.333 0.00 0.00 0.00 0.98
39 2379 4.184079 TCTTTGCGGGTAGAGTAGTTTC 57.816 45.455 0.00 0.00 0.00 2.78
40 2380 4.612264 TTCTTTGCGGGTAGAGTAGTTT 57.388 40.909 0.00 0.00 0.00 2.66
43 2383 4.451629 TCTTTCTTTGCGGGTAGAGTAG 57.548 45.455 0.00 0.00 0.00 2.57
52 2392 9.278734 GAATTAGATTAGTTTCTTTCTTTGCGG 57.721 33.333 0.00 0.00 0.00 5.69
116 2456 8.482943 TCCATACTAATTTGTGTGCATACTAGT 58.517 33.333 15.05 14.81 0.00 2.57
139 2479 0.987613 TGGCTCCCATGCATACTCCA 60.988 55.000 0.00 0.00 34.04 3.86
140 2480 0.183492 TTGGCTCCCATGCATACTCC 59.817 55.000 0.00 0.00 31.53 3.85
161 2509 9.159254 ACATGAATATATGAGTGAGGGAGTTAA 57.841 33.333 0.00 0.00 0.00 2.01
186 2534 3.432252 CACCTCCGTTGTGAACTATGAAC 59.568 47.826 0.00 0.00 35.74 3.18
195 2543 3.927555 GGATTCACCTCCGTTGTGA 57.072 52.632 0.00 0.00 40.80 3.58
205 2553 0.179119 CGGGTCGTACAGGATTCACC 60.179 60.000 0.00 0.00 39.35 4.02
206 2554 0.804933 GCGGGTCGTACAGGATTCAC 60.805 60.000 0.00 0.00 0.00 3.18
207 2555 0.968901 AGCGGGTCGTACAGGATTCA 60.969 55.000 0.00 0.00 0.00 2.57
208 2556 0.175073 AAGCGGGTCGTACAGGATTC 59.825 55.000 0.00 0.00 0.00 2.52
209 2557 0.108329 CAAGCGGGTCGTACAGGATT 60.108 55.000 0.00 0.00 0.00 3.01
210 2558 1.255667 ACAAGCGGGTCGTACAGGAT 61.256 55.000 0.00 0.00 0.00 3.24
211 2559 1.904865 ACAAGCGGGTCGTACAGGA 60.905 57.895 0.00 0.00 0.00 3.86
212 2560 1.736645 CACAAGCGGGTCGTACAGG 60.737 63.158 0.00 0.00 0.00 4.00
213 2561 0.732880 CTCACAAGCGGGTCGTACAG 60.733 60.000 0.00 0.00 0.00 2.74
214 2562 1.174078 TCTCACAAGCGGGTCGTACA 61.174 55.000 0.00 0.00 0.00 2.90
215 2563 0.456312 CTCTCACAAGCGGGTCGTAC 60.456 60.000 0.00 0.00 0.00 3.67
216 2564 0.607217 TCTCTCACAAGCGGGTCGTA 60.607 55.000 0.00 0.00 0.00 3.43
217 2565 1.867919 CTCTCTCACAAGCGGGTCGT 61.868 60.000 0.00 0.00 0.00 4.34
218 2566 1.153939 CTCTCTCACAAGCGGGTCG 60.154 63.158 0.00 0.00 0.00 4.79
219 2567 1.446966 GCTCTCTCACAAGCGGGTC 60.447 63.158 0.00 0.00 0.00 4.46
220 2568 1.882989 GAGCTCTCTCACAAGCGGGT 61.883 60.000 6.43 0.00 43.37 5.28
221 2569 1.153667 GAGCTCTCTCACAAGCGGG 60.154 63.158 6.43 0.00 43.37 6.13
222 2570 1.153667 GGAGCTCTCTCACAAGCGG 60.154 63.158 14.64 0.00 43.37 5.52
223 2571 0.179140 GAGGAGCTCTCTCACAAGCG 60.179 60.000 20.79 0.00 43.37 4.68
224 2572 0.179140 CGAGGAGCTCTCTCACAAGC 60.179 60.000 23.52 3.53 41.13 4.01
225 2573 1.135431 CACGAGGAGCTCTCTCACAAG 60.135 57.143 23.52 14.01 41.13 3.16
226 2574 0.884514 CACGAGGAGCTCTCTCACAA 59.115 55.000 23.52 0.00 41.13 3.33
227 2575 0.962855 CCACGAGGAGCTCTCTCACA 60.963 60.000 23.52 0.00 41.13 3.58
228 2576 1.662438 CCCACGAGGAGCTCTCTCAC 61.662 65.000 23.52 6.03 41.13 3.51
229 2577 1.379176 CCCACGAGGAGCTCTCTCA 60.379 63.158 23.52 0.00 41.13 3.27
230 2578 2.124693 CCCCACGAGGAGCTCTCTC 61.125 68.421 14.64 16.43 40.30 3.20
231 2579 2.043450 CCCCACGAGGAGCTCTCT 60.043 66.667 14.64 9.10 40.30 3.10
232 2580 2.363147 ACCCCACGAGGAGCTCTC 60.363 66.667 14.64 8.29 38.24 3.20
233 2581 2.681778 CACCCCACGAGGAGCTCT 60.682 66.667 14.64 0.00 38.24 4.09
234 2582 3.775654 CCACCCCACGAGGAGCTC 61.776 72.222 4.71 4.71 38.24 4.09
256 2604 4.517934 CATGGGGAGGCTGGCAGG 62.518 72.222 17.64 0.00 0.00 4.85
292 2640 1.392589 TAATCCTGTACGACCGGGTC 58.607 55.000 17.38 17.38 0.00 4.46
293 2641 2.077687 ATAATCCTGTACGACCGGGT 57.922 50.000 6.32 0.00 0.00 5.28
294 2642 3.464111 AAATAATCCTGTACGACCGGG 57.536 47.619 6.32 0.00 0.00 5.73
295 2643 3.001939 GCAAAATAATCCTGTACGACCGG 59.998 47.826 0.00 0.00 0.00 5.28
296 2644 3.302221 CGCAAAATAATCCTGTACGACCG 60.302 47.826 0.00 0.00 0.00 4.79
297 2645 3.619929 ACGCAAAATAATCCTGTACGACC 59.380 43.478 0.00 0.00 0.00 4.79
298 2646 4.852609 ACGCAAAATAATCCTGTACGAC 57.147 40.909 0.00 0.00 0.00 4.34
299 2647 4.930405 TGAACGCAAAATAATCCTGTACGA 59.070 37.500 0.00 0.00 0.00 3.43
300 2648 5.019498 GTGAACGCAAAATAATCCTGTACG 58.981 41.667 0.00 0.00 0.00 3.67
301 2649 5.933790 TGTGAACGCAAAATAATCCTGTAC 58.066 37.500 0.00 0.00 0.00 2.90
302 2650 6.375377 GTTGTGAACGCAAAATAATCCTGTA 58.625 36.000 2.37 0.00 0.00 2.74
303 2651 5.219633 GTTGTGAACGCAAAATAATCCTGT 58.780 37.500 2.37 0.00 0.00 4.00
304 2652 5.745653 GTTGTGAACGCAAAATAATCCTG 57.254 39.130 2.37 0.00 0.00 3.86
332 2680 0.898326 TGAGACGGTCTAGCTTGCCA 60.898 55.000 11.27 0.00 0.00 4.92
346 2694 5.077424 CGGTTTTAATAGTTGCGTTGAGAC 58.923 41.667 0.00 0.00 0.00 3.36
354 2705 3.458779 TGTCGCGGTTTTAATAGTTGC 57.541 42.857 6.13 0.00 0.00 4.17
369 2720 5.445939 CCATCTGTTACATAACACTTGTCGC 60.446 44.000 0.22 0.00 40.93 5.19
378 2729 2.618709 GGCCAGCCATCTGTTACATAAC 59.381 50.000 3.12 0.00 38.66 1.89
380 2731 2.104792 GAGGCCAGCCATCTGTTACATA 59.895 50.000 12.03 0.00 38.66 2.29
388 2739 0.034670 GTTCAAGAGGCCAGCCATCT 60.035 55.000 12.03 8.01 38.92 2.90
395 2746 3.644966 AAATATCCGTTCAAGAGGCCA 57.355 42.857 5.01 0.00 0.00 5.36
422 2773 3.840763 CACTTCGATCGTTTTGCTTTAGC 59.159 43.478 15.94 0.00 42.50 3.09
423 2774 5.264060 TCACTTCGATCGTTTTGCTTTAG 57.736 39.130 15.94 2.92 0.00 1.85
424 2775 5.006844 TGTTCACTTCGATCGTTTTGCTTTA 59.993 36.000 15.94 0.00 0.00 1.85
425 2776 4.201871 TGTTCACTTCGATCGTTTTGCTTT 60.202 37.500 15.94 0.00 0.00 3.51
426 2777 3.311322 TGTTCACTTCGATCGTTTTGCTT 59.689 39.130 15.94 0.00 0.00 3.91
427 2778 2.869801 TGTTCACTTCGATCGTTTTGCT 59.130 40.909 15.94 0.00 0.00 3.91
428 2779 3.247563 TGTTCACTTCGATCGTTTTGC 57.752 42.857 15.94 1.91 0.00 3.68
429 2780 3.659444 GCTTGTTCACTTCGATCGTTTTG 59.341 43.478 15.94 10.26 0.00 2.44
430 2781 3.311322 TGCTTGTTCACTTCGATCGTTTT 59.689 39.130 15.94 0.00 0.00 2.43
431 2782 2.869801 TGCTTGTTCACTTCGATCGTTT 59.130 40.909 15.94 0.00 0.00 3.60
432 2783 2.221055 GTGCTTGTTCACTTCGATCGTT 59.779 45.455 15.94 0.00 34.29 3.85
433 2784 1.792949 GTGCTTGTTCACTTCGATCGT 59.207 47.619 15.94 0.00 34.29 3.73
434 2785 1.126846 GGTGCTTGTTCACTTCGATCG 59.873 52.381 9.36 9.36 37.16 3.69
435 2786 1.464997 GGGTGCTTGTTCACTTCGATC 59.535 52.381 0.00 0.00 37.16 3.69
436 2787 1.523758 GGGTGCTTGTTCACTTCGAT 58.476 50.000 0.00 0.00 37.16 3.59
437 2788 0.534203 GGGGTGCTTGTTCACTTCGA 60.534 55.000 0.00 0.00 37.16 3.71
438 2789 0.817634 TGGGGTGCTTGTTCACTTCG 60.818 55.000 0.00 0.00 37.16 3.79
439 2790 1.398692 TTGGGGTGCTTGTTCACTTC 58.601 50.000 0.00 0.00 37.16 3.01
440 2791 1.963515 GATTGGGGTGCTTGTTCACTT 59.036 47.619 0.00 0.00 37.16 3.16
441 2792 1.133513 TGATTGGGGTGCTTGTTCACT 60.134 47.619 0.00 0.00 37.16 3.41
442 2793 1.327303 TGATTGGGGTGCTTGTTCAC 58.673 50.000 0.00 0.00 36.28 3.18
443 2794 1.894466 CATGATTGGGGTGCTTGTTCA 59.106 47.619 0.00 0.00 0.00 3.18
481 2832 4.561213 CACACGATCTAACGCTATTCACAA 59.439 41.667 0.00 0.00 36.70 3.33
483 2834 4.348656 TCACACGATCTAACGCTATTCAC 58.651 43.478 0.00 0.00 36.70 3.18
490 2841 0.997196 GGGTTCACACGATCTAACGC 59.003 55.000 0.00 0.00 36.70 4.84
491 2842 2.357327 TGGGTTCACACGATCTAACG 57.643 50.000 0.00 0.00 39.31 3.18
495 2846 2.104111 TGTCTTTGGGTTCACACGATCT 59.896 45.455 0.00 0.00 0.00 2.75
496 2847 2.223377 GTGTCTTTGGGTTCACACGATC 59.777 50.000 0.00 0.00 30.49 3.69
497 2848 2.158813 AGTGTCTTTGGGTTCACACGAT 60.159 45.455 0.00 0.00 43.28 3.73
498 2849 1.208535 AGTGTCTTTGGGTTCACACGA 59.791 47.619 0.00 0.00 43.28 4.35
499 2850 1.330521 CAGTGTCTTTGGGTTCACACG 59.669 52.381 0.00 0.00 43.28 4.49
500 2851 2.639065 TCAGTGTCTTTGGGTTCACAC 58.361 47.619 0.00 0.00 39.61 3.82
501 2852 3.278574 CTTCAGTGTCTTTGGGTTCACA 58.721 45.455 0.00 0.00 33.84 3.58
502 2853 3.279434 ACTTCAGTGTCTTTGGGTTCAC 58.721 45.455 0.00 0.00 0.00 3.18
503 2854 3.644966 ACTTCAGTGTCTTTGGGTTCA 57.355 42.857 0.00 0.00 0.00 3.18
504 2855 5.589050 ACTTTACTTCAGTGTCTTTGGGTTC 59.411 40.000 0.00 0.00 0.00 3.62
505 2856 5.506708 ACTTTACTTCAGTGTCTTTGGGTT 58.493 37.500 0.00 0.00 0.00 4.11
506 2857 5.112129 ACTTTACTTCAGTGTCTTTGGGT 57.888 39.130 0.00 0.00 0.00 4.51
507 2858 5.221048 CCAACTTTACTTCAGTGTCTTTGGG 60.221 44.000 0.00 0.00 0.00 4.12
508 2859 5.588648 TCCAACTTTACTTCAGTGTCTTTGG 59.411 40.000 0.00 0.00 32.35 3.28
509 2860 6.677781 TCCAACTTTACTTCAGTGTCTTTG 57.322 37.500 0.00 0.00 0.00 2.77
510 2861 6.183360 GCTTCCAACTTTACTTCAGTGTCTTT 60.183 38.462 0.00 0.00 0.00 2.52
511 2862 5.297029 GCTTCCAACTTTACTTCAGTGTCTT 59.703 40.000 0.00 0.00 0.00 3.01
512 2863 4.816925 GCTTCCAACTTTACTTCAGTGTCT 59.183 41.667 0.00 0.00 0.00 3.41
513 2864 4.816925 AGCTTCCAACTTTACTTCAGTGTC 59.183 41.667 0.00 0.00 0.00 3.67
514 2865 4.781934 AGCTTCCAACTTTACTTCAGTGT 58.218 39.130 0.00 0.00 0.00 3.55
515 2866 5.992217 ACTAGCTTCCAACTTTACTTCAGTG 59.008 40.000 0.00 0.00 0.00 3.66
516 2867 6.176014 ACTAGCTTCCAACTTTACTTCAGT 57.824 37.500 0.00 0.00 0.00 3.41
527 2878 4.081917 AGCTCAGACTAACTAGCTTCCAAC 60.082 45.833 0.00 0.00 42.52 3.77
564 2915 2.818432 CAGAGGGGCAATAATGATCTGC 59.182 50.000 0.00 0.00 35.28 4.26
586 2937 4.232221 ACTGTTTTACTCGTGACCATACG 58.768 43.478 0.00 0.00 44.98 3.06
670 3021 4.514066 ACATACTGTTGTCCTTCGGAAAAC 59.486 41.667 8.66 8.66 46.94 2.43
675 3026 4.817517 ACTTACATACTGTTGTCCTTCGG 58.182 43.478 0.00 0.00 0.00 4.30
736 3092 0.907486 TCTCCTCCTGCAACCTCATG 59.093 55.000 0.00 0.00 0.00 3.07
740 3096 1.140312 TTTGTCTCCTCCTGCAACCT 58.860 50.000 0.00 0.00 0.00 3.50
751 3107 4.836125 TCTGATTGCAACTTTTGTCTCC 57.164 40.909 0.00 0.00 0.00 3.71
761 3117 7.365741 TCTCTTTCTCATTTTCTGATTGCAAC 58.634 34.615 0.00 0.00 32.10 4.17
763 3119 7.309012 CCTTCTCTTTCTCATTTTCTGATTGCA 60.309 37.037 0.00 0.00 32.10 4.08
764 3120 7.028361 CCTTCTCTTTCTCATTTTCTGATTGC 58.972 38.462 0.00 0.00 32.10 3.56
765 3121 8.332996 TCCTTCTCTTTCTCATTTTCTGATTG 57.667 34.615 0.00 0.00 32.10 2.67
768 3124 8.752005 TTTTCCTTCTCTTTCTCATTTTCTGA 57.248 30.769 0.00 0.00 0.00 3.27
769 3125 8.844244 TCTTTTCCTTCTCTTTCTCATTTTCTG 58.156 33.333 0.00 0.00 0.00 3.02
770 3126 8.986929 TCTTTTCCTTCTCTTTCTCATTTTCT 57.013 30.769 0.00 0.00 0.00 2.52
776 3379 7.938140 TGTTTTCTTTTCCTTCTCTTTCTCA 57.062 32.000 0.00 0.00 0.00 3.27
792 3395 7.039784 TCCAGCTAATTGCAACTATGTTTTCTT 60.040 33.333 0.00 0.00 45.94 2.52
793 3396 6.434028 TCCAGCTAATTGCAACTATGTTTTCT 59.566 34.615 0.00 0.00 45.94 2.52
794 3397 6.620678 TCCAGCTAATTGCAACTATGTTTTC 58.379 36.000 0.00 0.00 45.94 2.29
845 3449 2.869237 GCAGTTGCTCAGTCATCAGTGA 60.869 50.000 0.00 0.00 38.21 3.41
846 3450 1.463831 GCAGTTGCTCAGTCATCAGTG 59.536 52.381 0.00 0.00 38.21 3.66
847 3451 1.071228 TGCAGTTGCTCAGTCATCAGT 59.929 47.619 5.62 0.00 42.66 3.41
848 3452 1.463831 GTGCAGTTGCTCAGTCATCAG 59.536 52.381 5.62 0.00 42.66 2.90
849 3453 1.071228 AGTGCAGTTGCTCAGTCATCA 59.929 47.619 5.62 0.00 42.66 3.07
850 3454 1.805869 AGTGCAGTTGCTCAGTCATC 58.194 50.000 5.62 0.00 42.66 2.92
851 3455 2.301296 ACTAGTGCAGTTGCTCAGTCAT 59.699 45.455 0.00 0.00 42.66 3.06
889 3493 4.693532 GTGCATGGACTGGACGAA 57.306 55.556 10.51 0.00 36.41 3.85
907 3511 0.109342 CTGCTCTCACACTGGGGTTT 59.891 55.000 0.00 0.00 0.00 3.27
909 3513 0.178932 TACTGCTCTCACACTGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
915 3519 2.414481 CTGCAATGTACTGCTCTCACAC 59.586 50.000 8.39 0.00 43.07 3.82
918 3522 1.002315 TGCTGCAATGTACTGCTCTCA 59.998 47.619 0.00 1.88 43.07 3.27
922 3526 0.322277 AGCTGCTGCAATGTACTGCT 60.322 50.000 18.42 4.00 43.07 4.24
923 3527 0.179171 CAGCTGCTGCAATGTACTGC 60.179 55.000 17.73 1.35 42.74 4.40
940 3544 5.473931 AGCCGACAATATAATCTGTAGCAG 58.526 41.667 0.00 0.00 30.84 4.24
941 3545 5.010617 TGAGCCGACAATATAATCTGTAGCA 59.989 40.000 0.00 0.00 30.84 3.49
947 3551 8.454106 GCAATAATTGAGCCGACAATATAATCT 58.546 33.333 0.00 0.00 39.19 2.40
950 3554 7.359595 GTGCAATAATTGAGCCGACAATATAA 58.640 34.615 0.00 0.00 39.19 0.98
973 3603 3.406200 CTCCCCCTGCTCCTGGTG 61.406 72.222 0.00 0.00 0.00 4.17
983 3613 2.015726 ATCTCTCCGGTCTCCCCCT 61.016 63.158 0.00 0.00 0.00 4.79
1000 3630 3.673594 CGAGCGTTTACTTGACTCTCCAT 60.674 47.826 0.00 0.00 0.00 3.41
1035 3665 0.397254 TGGATCGGAGAGGGGAAGAC 60.397 60.000 0.00 0.00 43.63 3.01
1270 3934 1.471676 GGATCGACGGAAACAGAGCAT 60.472 52.381 0.00 0.00 0.00 3.79
1283 3947 2.002586 CTGTGTGGTGAATGGATCGAC 58.997 52.381 0.00 0.00 0.00 4.20
1298 3962 3.560636 ACAAGTAGCAACTTCCTGTGT 57.439 42.857 0.00 0.00 44.28 3.72
1390 4071 3.444742 TGCATGATTTGTCATTCCCAGAC 59.555 43.478 0.00 0.00 36.55 3.51
1492 4379 3.192422 TGCATAAAAACATTCTGGTCCCG 59.808 43.478 0.00 0.00 0.00 5.14
1503 4390 5.814314 CGAAAAACGGATGCATAAAAACA 57.186 34.783 0.00 0.00 38.46 2.83
1518 4415 7.057791 CACATCACAAACAAAAACACGAAAAAC 59.942 33.333 0.00 0.00 0.00 2.43
1521 4418 5.692204 ACACATCACAAACAAAAACACGAAA 59.308 32.000 0.00 0.00 0.00 3.46
1524 4421 4.720667 GCACACATCACAAACAAAAACACG 60.721 41.667 0.00 0.00 0.00 4.49
1590 4561 0.950836 TGGTTGGAACACATGCGAAG 59.049 50.000 0.00 0.00 39.29 3.79
1591 4562 0.950836 CTGGTTGGAACACATGCGAA 59.049 50.000 0.00 0.00 39.29 4.70
1593 4564 1.081242 GCTGGTTGGAACACATGCG 60.081 57.895 0.00 0.00 39.29 4.73
1636 4633 4.215399 TCTTTCATAAACCTGCCAAACGAG 59.785 41.667 0.00 0.00 0.00 4.18
1638 4635 4.497473 TCTTTCATAAACCTGCCAAACG 57.503 40.909 0.00 0.00 0.00 3.60
1660 4657 1.269465 GCATGCATCGTCTCTAGCTCA 60.269 52.381 14.21 0.00 0.00 4.26
1795 4792 5.508994 GGGGAATTCTGTTTTCAACGTCAAT 60.509 40.000 5.23 0.00 0.00 2.57
1796 4793 4.202070 GGGGAATTCTGTTTTCAACGTCAA 60.202 41.667 5.23 0.00 0.00 3.18
1797 4794 3.316868 GGGGAATTCTGTTTTCAACGTCA 59.683 43.478 5.23 0.00 0.00 4.35
1798 4795 3.305131 GGGGGAATTCTGTTTTCAACGTC 60.305 47.826 5.23 0.00 0.00 4.34
1799 4796 2.626266 GGGGGAATTCTGTTTTCAACGT 59.374 45.455 5.23 0.00 0.00 3.99
1800 4797 3.297830 GGGGGAATTCTGTTTTCAACG 57.702 47.619 5.23 0.00 0.00 4.10
2969 9369 1.594833 GTCTCACCATGGCACCGTA 59.405 57.895 13.04 0.00 0.00 4.02
2970 9370 2.347490 GTCTCACCATGGCACCGT 59.653 61.111 13.04 0.00 0.00 4.83
3191 9592 0.687427 ACACTGCTGCCAAGGGTTTT 60.687 50.000 0.00 0.00 0.00 2.43
3208 9609 1.297378 GATCGCGACGATGACGACA 60.297 57.895 12.93 0.00 47.00 4.35
3234 9635 1.580942 CGGCACCAATCAACACCTG 59.419 57.895 0.00 0.00 0.00 4.00
3261 9662 1.048601 TTCACGAGGCTCCAAGACTT 58.951 50.000 9.32 0.00 30.20 3.01
3275 9676 2.819595 CCACCGGGCTCATTCACG 60.820 66.667 6.32 0.00 0.00 4.35
3316 9717 1.025812 ACGGCGGATCAACAAAAACA 58.974 45.000 13.24 0.00 0.00 2.83
3476 9878 1.683365 GGCTTCCCACATGCACCAT 60.683 57.895 0.00 0.00 0.00 3.55
3477 9879 2.283101 GGCTTCCCACATGCACCA 60.283 61.111 0.00 0.00 0.00 4.17
3478 9880 2.283101 TGGCTTCCCACATGCACC 60.283 61.111 0.00 0.00 35.79 5.01
3480 9882 1.001764 CTCTGGCTTCCCACATGCA 60.002 57.895 0.00 0.00 35.79 3.96
3481 9883 2.413142 GCTCTGGCTTCCCACATGC 61.413 63.158 0.00 0.00 35.79 4.06
3482 9884 1.001764 TGCTCTGGCTTCCCACATG 60.002 57.895 0.00 0.00 35.79 3.21
3483 9885 1.302285 CTGCTCTGGCTTCCCACAT 59.698 57.895 0.00 0.00 35.79 3.21
3484 9886 2.752358 CTGCTCTGGCTTCCCACA 59.248 61.111 0.00 0.00 35.79 4.17
3485 9887 2.045536 CCTGCTCTGGCTTCCCAC 60.046 66.667 0.00 0.00 35.79 4.61
3486 9888 2.530151 ACCTGCTCTGGCTTCCCA 60.530 61.111 0.00 0.00 39.32 4.37
3487 9889 2.250741 GAGACCTGCTCTGGCTTCCC 62.251 65.000 0.00 0.00 40.61 3.97
3488 9890 1.220477 GAGACCTGCTCTGGCTTCC 59.780 63.158 0.00 0.00 40.61 3.46
3489 9891 1.153667 CGAGACCTGCTCTGGCTTC 60.154 63.158 0.00 0.00 41.66 3.86
3490 9892 1.607756 TCGAGACCTGCTCTGGCTT 60.608 57.895 0.00 0.00 41.66 4.35
3491 9893 2.036414 TCGAGACCTGCTCTGGCT 59.964 61.111 0.00 0.00 41.66 4.75
3492 9894 2.183046 GTCGAGACCTGCTCTGGC 59.817 66.667 0.00 0.00 41.66 4.85
3493 9895 2.487428 CGTCGAGACCTGCTCTGG 59.513 66.667 0.00 0.00 41.66 3.86
3494 9896 2.487428 CCGTCGAGACCTGCTCTG 59.513 66.667 0.00 0.00 41.66 3.35
3495 9897 3.444805 GCCGTCGAGACCTGCTCT 61.445 66.667 0.00 0.00 41.66 4.09
3496 9898 3.444805 AGCCGTCGAGACCTGCTC 61.445 66.667 8.52 0.00 40.38 4.26
3497 9899 3.753434 CAGCCGTCGAGACCTGCT 61.753 66.667 8.52 8.52 36.67 4.24
3499 9901 1.934220 TAAGCAGCCGTCGAGACCTG 61.934 60.000 0.00 1.97 0.00 4.00
3500 9902 1.248785 TTAAGCAGCCGTCGAGACCT 61.249 55.000 0.00 0.00 0.00 3.85
3501 9903 0.802607 CTTAAGCAGCCGTCGAGACC 60.803 60.000 0.00 0.00 0.00 3.85
3502 9904 1.414527 GCTTAAGCAGCCGTCGAGAC 61.415 60.000 22.59 0.00 43.65 3.36
3503 9905 1.153823 GCTTAAGCAGCCGTCGAGA 60.154 57.895 22.59 0.00 43.65 4.04
3504 9906 3.389206 GCTTAAGCAGCCGTCGAG 58.611 61.111 22.59 0.00 43.65 4.04
3512 9914 1.129437 GCGGTCTTTCAGCTTAAGCAG 59.871 52.381 28.39 21.05 45.16 4.24
3559 9961 4.020662 ACCTCTTCTACTCTTGCTTTGAGG 60.021 45.833 0.00 0.00 42.82 3.86
3588 9990 0.234884 GTTGTAGCGTGTGTTCCTGC 59.765 55.000 0.00 0.00 0.00 4.85
3672 10074 1.131883 CAATGTTGCTAGCTGAGTGGC 59.868 52.381 17.23 0.00 0.00 5.01
3742 10144 8.323567 AGATTTTTCAGAAATTGCAATATGGGT 58.676 29.630 13.39 0.00 0.00 4.51
3973 10375 3.508840 CTCAATCCCGCAACCCGC 61.509 66.667 0.00 0.00 35.03 6.13
3974 10376 3.508840 GCTCAATCCCGCAACCCG 61.509 66.667 0.00 0.00 0.00 5.28
4015 10417 2.279784 CTCGGCTCGGCTCAATCC 60.280 66.667 0.00 0.00 0.00 3.01
4016 10418 2.914777 AAGCTCGGCTCGGCTCAATC 62.915 60.000 9.59 0.00 38.25 2.67
4017 10419 2.527951 AAAGCTCGGCTCGGCTCAAT 62.528 55.000 9.59 1.21 38.25 2.57
4018 10420 3.240134 AAAGCTCGGCTCGGCTCAA 62.240 57.895 9.59 0.00 38.25 3.02
4020 10422 3.191539 CAAAGCTCGGCTCGGCTC 61.192 66.667 9.59 0.00 38.25 4.70
4023 10425 3.494336 CAGCAAAGCTCGGCTCGG 61.494 66.667 8.96 0.00 38.25 4.63
4024 10426 4.157958 GCAGCAAAGCTCGGCTCG 62.158 66.667 8.96 6.82 38.25 5.03
4025 10427 2.745492 AGCAGCAAAGCTCGGCTC 60.745 61.111 8.96 5.36 42.18 4.70
4026 10428 3.054503 CAGCAGCAAAGCTCGGCT 61.055 61.111 6.27 6.27 44.54 5.52
4027 10429 4.773117 GCAGCAGCAAAGCTCGGC 62.773 66.667 0.00 1.50 44.54 5.54
4028 10430 3.054503 AGCAGCAGCAAAGCTCGG 61.055 61.111 3.17 0.00 44.54 4.63
4029 10431 2.176055 CAGCAGCAGCAAAGCTCG 59.824 61.111 3.17 0.00 44.54 5.03
4030 10432 2.126424 GCAGCAGCAGCAAAGCTC 60.126 61.111 4.63 0.00 44.54 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.