Multiple sequence alignment - TraesCS4A01G448700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G448700 chr4A 100.000 5631 0 0 1 5631 715088834 715094464 0.000000e+00 10399.0
1 TraesCS4A01G448700 chr4A 97.279 3124 68 3 1939 5056 715437614 715440726 0.000000e+00 5282.0
2 TraesCS4A01G448700 chr4A 97.145 1121 23 2 785 1905 715428349 715429460 0.000000e+00 1884.0
3 TraesCS4A01G448700 chr4A 77.026 2851 593 49 1520 4339 731694380 731697199 0.000000e+00 1580.0
4 TraesCS4A01G448700 chr4A 76.942 2819 599 41 1547 4341 714430914 714433705 0.000000e+00 1557.0
5 TraesCS4A01G448700 chr4A 79.862 1882 356 19 1545 3413 715354595 715356466 0.000000e+00 1354.0
6 TraesCS4A01G448700 chr4A 97.070 785 20 3 1 784 715427518 715428300 0.000000e+00 1319.0
7 TraesCS4A01G448700 chr4A 73.862 769 170 24 3615 4366 714439663 714440417 1.550000e-70 278.0
8 TraesCS4A01G448700 chr4A 95.041 121 6 0 5052 5172 715440886 715441006 2.070000e-44 191.0
9 TraesCS4A01G448700 chr4A 96.970 99 3 0 428 526 715089040 715088942 3.490000e-37 167.0
10 TraesCS4A01G448700 chr4A 96.970 99 3 0 109 207 715089359 715089261 3.490000e-37 167.0
11 TraesCS4A01G448700 chr4A 96.970 99 3 0 428 526 715427724 715427626 3.490000e-37 167.0
12 TraesCS4A01G448700 chr4A 94.949 99 4 1 109 207 715428042 715427945 2.720000e-33 154.0
13 TraesCS4A01G448700 chr4A 97.436 78 2 0 1203 1280 715090113 715090036 3.540000e-27 134.0
14 TraesCS4A01G448700 chr4A 86.066 122 17 0 1001 1122 714564594 714564715 1.270000e-26 132.0
15 TraesCS4A01G448700 chr4A 96.154 78 3 0 1203 1280 715428836 715428759 1.650000e-25 128.0
16 TraesCS4A01G448700 chr4A 76.168 214 34 15 228 432 715427953 715427748 4.640000e-16 97.1
17 TraesCS4A01G448700 chr4A 75.455 220 32 19 228 436 715089269 715089061 2.790000e-13 87.9
18 TraesCS4A01G448700 chr7A 83.310 2822 441 25 1533 4339 17697403 17694597 0.000000e+00 2575.0
19 TraesCS4A01G448700 chr7A 78.831 2806 545 41 1559 4341 18036882 18034103 0.000000e+00 1845.0
20 TraesCS4A01G448700 chr7A 78.501 2856 542 58 1520 4350 18316118 18318926 0.000000e+00 1807.0
21 TraesCS4A01G448700 chr7A 78.605 2781 546 41 1584 4341 17425350 17422596 0.000000e+00 1794.0
22 TraesCS4A01G448700 chr7A 72.931 1426 316 52 2864 4261 17846737 17845354 1.120000e-116 431.0
23 TraesCS4A01G448700 chr7D 77.155 2854 584 53 1520 4339 8192652 8189833 0.000000e+00 1596.0
24 TraesCS4A01G448700 chr7D 77.659 1683 353 17 1584 3256 16361744 16363413 0.000000e+00 1003.0
25 TraesCS4A01G448700 chr5D 88.608 79 6 2 1203 1280 465002285 465002361 6.010000e-15 93.5
26 TraesCS4A01G448700 chr5D 88.608 79 6 2 1203 1280 465002361 465002285 6.010000e-15 93.5
27 TraesCS4A01G448700 chr5D 100.000 44 0 0 1239 1282 197145773 197145730 1.300000e-11 82.4
28 TraesCS4A01G448700 chr3A 85.882 85 7 4 1203 1282 578876275 578876359 1.010000e-12 86.1
29 TraesCS4A01G448700 chr3D 100.000 45 0 0 1200 1244 43024290 43024246 3.620000e-12 84.2
30 TraesCS4A01G448700 chr4B 84.211 76 12 0 1206 1281 535740625 535740550 2.180000e-09 75.0
31 TraesCS4A01G448700 chr4B 83.544 79 13 0 1203 1281 535740551 535740629 2.180000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G448700 chr4A 715088834 715094464 5630 False 10399.0 10399 100.0000 1 5631 1 chr4A.!!$F4 5630
1 TraesCS4A01G448700 chr4A 715437614 715441006 3392 False 2736.5 5282 96.1600 1939 5172 2 chr4A.!!$F8 3233
2 TraesCS4A01G448700 chr4A 715427518 715429460 1942 False 1601.5 1884 97.1075 1 1905 2 chr4A.!!$F7 1904
3 TraesCS4A01G448700 chr4A 731694380 731697199 2819 False 1580.0 1580 77.0260 1520 4339 1 chr4A.!!$F6 2819
4 TraesCS4A01G448700 chr4A 714430914 714433705 2791 False 1557.0 1557 76.9420 1547 4341 1 chr4A.!!$F1 2794
5 TraesCS4A01G448700 chr4A 715354595 715356466 1871 False 1354.0 1354 79.8620 1545 3413 1 chr4A.!!$F5 1868
6 TraesCS4A01G448700 chr4A 714439663 714440417 754 False 278.0 278 73.8620 3615 4366 1 chr4A.!!$F2 751
7 TraesCS4A01G448700 chr7A 17694597 17697403 2806 True 2575.0 2575 83.3100 1533 4339 1 chr7A.!!$R2 2806
8 TraesCS4A01G448700 chr7A 18034103 18036882 2779 True 1845.0 1845 78.8310 1559 4341 1 chr7A.!!$R4 2782
9 TraesCS4A01G448700 chr7A 18316118 18318926 2808 False 1807.0 1807 78.5010 1520 4350 1 chr7A.!!$F1 2830
10 TraesCS4A01G448700 chr7A 17422596 17425350 2754 True 1794.0 1794 78.6050 1584 4341 1 chr7A.!!$R1 2757
11 TraesCS4A01G448700 chr7A 17845354 17846737 1383 True 431.0 431 72.9310 2864 4261 1 chr7A.!!$R3 1397
12 TraesCS4A01G448700 chr7D 8189833 8192652 2819 True 1596.0 1596 77.1550 1520 4339 1 chr7D.!!$R1 2819
13 TraesCS4A01G448700 chr7D 16361744 16363413 1669 False 1003.0 1003 77.6590 1584 3256 1 chr7D.!!$F1 1672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 0.603975 AGAAAGGGAAGCTGTGCGAC 60.604 55.000 0.00 0.00 0.00 5.19 F
367 368 1.267261 GCTGTGCGACGTCTATAGGAT 59.733 52.381 14.70 0.00 0.00 3.24 F
516 517 1.269723 CGTGTCCACTCAAGCTGTAGA 59.730 52.381 2.72 0.00 0.00 2.59 F
1892 1945 0.254462 TGCCTCCAACAGTGTTGACA 59.746 50.000 32.72 21.95 0.00 3.58 F
2713 2767 2.373224 AGCCTTGAAGCATTAAGGAGC 58.627 47.619 15.95 2.12 44.98 4.70 F
3610 3688 1.760613 TCTGGTCGTTGGTTCAAGTCT 59.239 47.619 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1262 1312 2.714793 TGAGTACTCCCTCCGATCCATA 59.285 50.000 20.11 0.0 0.00 2.74 R
1328 1378 3.198635 TGAGGCTGATTAGTTTCCTCCAG 59.801 47.826 0.00 0.0 41.90 3.86 R
2263 2316 3.449377 GCTCTTCTCTAAGGTAGTTGCCT 59.551 47.826 0.00 0.0 41.41 4.75 R
3610 3688 2.843545 GGCACCCTCAAACCCTCA 59.156 61.111 0.00 0.0 0.00 3.86 R
4059 4156 0.250338 AAACACGAGCTTCTCCCCAC 60.250 55.000 0.00 0.0 0.00 4.61 R
5324 5594 0.031314 CGTAGCTCGCATCCTGACAT 59.969 55.000 0.00 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 229 4.039730 GCCAGCTGATACTCATCTTTCCTA 59.960 45.833 17.39 0.00 31.93 2.94
246 247 8.069356 TCTTTCCTACAATACATAAGGTCCCTA 58.931 37.037 0.00 0.00 0.00 3.53
316 317 3.036084 GAGTGGACACGGTGTGCG 61.036 66.667 24.49 0.00 41.94 5.34
332 333 1.755008 GCGGTCCCTCTCTAGTGCT 60.755 63.158 0.00 0.00 0.00 4.40
345 346 6.014771 TCTCTAGTGCTATGTAGAAAGGGA 57.985 41.667 0.00 0.00 0.00 4.20
355 356 0.973632 TAGAAAGGGAAGCTGTGCGA 59.026 50.000 0.00 0.00 0.00 5.10
356 357 0.603975 AGAAAGGGAAGCTGTGCGAC 60.604 55.000 0.00 0.00 0.00 5.19
367 368 1.267261 GCTGTGCGACGTCTATAGGAT 59.733 52.381 14.70 0.00 0.00 3.24
507 508 2.108157 GCACACCGTGTCCACTCA 59.892 61.111 0.00 0.00 35.75 3.41
516 517 1.269723 CGTGTCCACTCAAGCTGTAGA 59.730 52.381 2.72 0.00 0.00 2.59
569 570 7.763985 TGACATCAAATATCAGTTGTATGTCGT 59.236 33.333 17.02 0.00 40.97 4.34
607 608 8.186709 ACTGGAAAATTCTTTGATGTGAATCT 57.813 30.769 0.00 0.00 32.43 2.40
641 642 9.474920 CAATTTTTGTATCAAAACTAGGCTCAA 57.525 29.630 7.08 0.00 0.00 3.02
873 923 2.359169 CCAAGGCTAGCTCGGTCCA 61.359 63.158 15.72 0.00 0.00 4.02
1019 1069 4.436998 GGCAGGGACGACGGTGAG 62.437 72.222 0.00 0.00 0.00 3.51
1180 1230 6.818644 TGGAGTATTATTCAAGAAGCAGTCAC 59.181 38.462 0.00 0.00 0.00 3.67
1181 1231 6.258947 GGAGTATTATTCAAGAAGCAGTCACC 59.741 42.308 0.00 0.00 0.00 4.02
1182 1232 6.711277 AGTATTATTCAAGAAGCAGTCACCA 58.289 36.000 0.00 0.00 0.00 4.17
1183 1233 7.168219 AGTATTATTCAAGAAGCAGTCACCAA 58.832 34.615 0.00 0.00 0.00 3.67
1184 1234 5.689383 TTATTCAAGAAGCAGTCACCAAC 57.311 39.130 0.00 0.00 0.00 3.77
1185 1235 3.281727 TTCAAGAAGCAGTCACCAACT 57.718 42.857 0.00 0.00 39.44 3.16
1186 1236 2.838736 TCAAGAAGCAGTCACCAACTC 58.161 47.619 0.00 0.00 35.45 3.01
1187 1237 2.170397 TCAAGAAGCAGTCACCAACTCA 59.830 45.455 0.00 0.00 35.45 3.41
1211 1261 5.312443 ACCACCCAAATATATTACTCCCTCC 59.688 44.000 0.00 0.00 0.00 4.30
1328 1378 7.550906 AGGAAGATAAAATAGACACACTCAAGC 59.449 37.037 0.00 0.00 0.00 4.01
1344 1394 4.287067 ACTCAAGCTGGAGGAAACTAATCA 59.713 41.667 22.33 0.00 44.43 2.57
1378 1428 1.546961 CTACCACCTTCTCACTCGGT 58.453 55.000 0.00 0.00 0.00 4.69
1389 1439 4.950205 TCTCACTCGGTTCTTTAAACCT 57.050 40.909 5.49 0.00 38.15 3.50
1406 1456 3.420300 ACCTGACGAGTCTAGAGAACA 57.580 47.619 4.78 0.00 0.00 3.18
1417 1467 8.185505 ACGAGTCTAGAGAACAAAATATGAGAC 58.814 37.037 0.00 0.00 0.00 3.36
1444 1494 6.782988 ACATTCCTAAGAGTAGCCAAGCTATA 59.217 38.462 0.00 0.00 43.30 1.31
1813 1866 2.159448 CGCCAACCAAATTCGCAATCTA 60.159 45.455 0.00 0.00 0.00 1.98
1851 1904 3.441101 AGGTGAGCAGTAGGAATACACA 58.559 45.455 0.00 0.00 0.00 3.72
1892 1945 0.254462 TGCCTCCAACAGTGTTGACA 59.746 50.000 32.72 21.95 0.00 3.58
2239 2292 6.266103 AGAAATGCTTGAATGAACTTGAAGGA 59.734 34.615 0.00 0.00 33.35 3.36
2263 2316 6.798427 AAGGAAGTGCAAGTAGATGATCTA 57.202 37.500 0.00 0.00 0.00 1.98
2407 2460 4.711355 TGTAGCCGGGTAATAGTAACAACT 59.289 41.667 16.36 0.00 0.00 3.16
2646 2700 3.304726 GCCACCAAAAAGCTAACAGAGTC 60.305 47.826 0.00 0.00 0.00 3.36
2707 2761 3.620488 CAACCCTAGCCTTGAAGCATTA 58.380 45.455 0.00 0.00 34.23 1.90
2713 2767 2.373224 AGCCTTGAAGCATTAAGGAGC 58.627 47.619 15.95 2.12 44.98 4.70
3413 3470 3.616821 CACATCATTGCCAGCTGAAATTG 59.383 43.478 17.39 12.52 0.00 2.32
3610 3688 1.760613 TCTGGTCGTTGGTTCAAGTCT 59.239 47.619 0.00 0.00 0.00 3.24
3767 3845 2.650116 GCAGAAGGAGCCTCCACGA 61.650 63.158 14.46 0.00 39.61 4.35
3955 4051 7.894708 TCAAGCATCTTATGAATTTGGTGAAA 58.105 30.769 0.00 0.00 0.00 2.69
4264 4361 5.152623 TCAACGAGATTTCACTTGGAGAT 57.847 39.130 0.00 0.00 0.00 2.75
4371 4471 2.202707 GGGTTACCATGACCTTAGGGT 58.797 52.381 2.98 0.00 42.33 4.34
4422 4522 1.948145 AGTGATAGAAGTAGCGACGGG 59.052 52.381 0.00 0.00 0.00 5.28
4448 4548 1.532868 CAGTTGTTCTTTCCGAGCAGG 59.467 52.381 0.00 0.00 42.97 4.85
4449 4549 0.238553 GTTGTTCTTTCCGAGCAGGC 59.761 55.000 0.00 0.00 40.77 4.85
4450 4550 0.179032 TTGTTCTTTCCGAGCAGGCA 60.179 50.000 0.00 0.00 40.77 4.75
4608 4708 8.470805 TCTTCTCTTCTATTTTACTGCCTGTAG 58.529 37.037 0.00 0.00 32.08 2.74
4722 4822 0.618458 TTAGGTCGCTGCCTTCCAAT 59.382 50.000 1.22 0.00 39.94 3.16
4735 4835 4.065789 GCCTTCCAATGCTATACAGGTAC 58.934 47.826 0.00 0.00 0.00 3.34
4736 4836 4.202367 GCCTTCCAATGCTATACAGGTACT 60.202 45.833 0.00 0.00 43.88 2.73
4836 4936 5.036737 GGTGCATTGCAGTTTATGATGTAC 58.963 41.667 12.53 3.06 40.08 2.90
4841 4941 8.631797 TGCATTGCAGTTTATGATGTACATATT 58.368 29.630 8.71 1.74 36.42 1.28
4896 5002 7.703328 ACGCAGAAGAAAGAAATTAGTTTTCA 58.297 30.769 10.17 0.00 45.19 2.69
5016 5122 4.112716 TGTTATGCTGCAATTGGTCATG 57.887 40.909 6.36 0.00 0.00 3.07
5112 5382 3.134081 CGTATCTTCTGGGTATTGGTGGT 59.866 47.826 0.00 0.00 0.00 4.16
5118 5388 2.905085 TCTGGGTATTGGTGGTACGAAA 59.095 45.455 0.00 0.00 0.00 3.46
5125 5395 3.380479 TTGGTGGTACGAAAGAGACAG 57.620 47.619 0.00 0.00 0.00 3.51
5172 5442 0.610174 TGACAGCTGTTAGCCCAGAG 59.390 55.000 22.65 0.00 43.77 3.35
5173 5443 0.610687 GACAGCTGTTAGCCCAGAGT 59.389 55.000 22.65 0.00 43.77 3.24
5174 5444 1.002544 GACAGCTGTTAGCCCAGAGTT 59.997 52.381 22.65 0.00 43.77 3.01
5175 5445 1.271054 ACAGCTGTTAGCCCAGAGTTG 60.271 52.381 15.25 0.00 43.77 3.16
5176 5446 0.326264 AGCTGTTAGCCCAGAGTTGG 59.674 55.000 0.00 0.00 43.77 3.77
5177 5447 0.036875 GCTGTTAGCCCAGAGTTGGT 59.963 55.000 0.17 0.00 43.40 3.67
5178 5448 1.545651 GCTGTTAGCCCAGAGTTGGTT 60.546 52.381 0.17 0.00 43.40 3.67
5179 5449 2.863809 CTGTTAGCCCAGAGTTGGTTT 58.136 47.619 0.00 0.00 43.40 3.27
5180 5450 2.814336 CTGTTAGCCCAGAGTTGGTTTC 59.186 50.000 0.00 0.00 43.40 2.78
5181 5451 2.173782 TGTTAGCCCAGAGTTGGTTTCA 59.826 45.455 0.00 0.00 43.40 2.69
5182 5452 2.552743 GTTAGCCCAGAGTTGGTTTCAC 59.447 50.000 0.00 0.00 43.40 3.18
5183 5453 0.178990 AGCCCAGAGTTGGTTTCACC 60.179 55.000 0.00 0.00 43.40 4.02
5194 5464 3.524095 TGGTTTCACCATGGAGTTGAT 57.476 42.857 21.47 0.00 44.79 2.57
5195 5465 3.420893 TGGTTTCACCATGGAGTTGATC 58.579 45.455 21.47 8.14 44.79 2.92
5196 5466 3.181435 TGGTTTCACCATGGAGTTGATCA 60.181 43.478 21.47 8.10 44.79 2.92
5197 5467 3.826157 GGTTTCACCATGGAGTTGATCAA 59.174 43.478 21.47 3.38 38.42 2.57
5198 5468 4.321230 GGTTTCACCATGGAGTTGATCAAC 60.321 45.833 27.69 27.69 38.42 3.18
5199 5469 3.071874 TCACCATGGAGTTGATCAACC 57.928 47.619 30.34 21.99 42.06 3.77
5200 5470 2.094675 CACCATGGAGTTGATCAACCC 58.905 52.381 30.34 28.23 42.06 4.11
5201 5471 1.710244 ACCATGGAGTTGATCAACCCA 59.290 47.619 32.73 32.73 41.98 4.51
5202 5472 2.094675 CCATGGAGTTGATCAACCCAC 58.905 52.381 33.04 24.46 41.22 4.61
5203 5473 2.291153 CCATGGAGTTGATCAACCCACT 60.291 50.000 33.04 24.05 41.22 4.00
5204 5474 3.054434 CCATGGAGTTGATCAACCCACTA 60.054 47.826 33.04 23.67 41.22 2.74
5205 5475 3.981071 TGGAGTTGATCAACCCACTAG 57.019 47.619 29.77 0.00 42.06 2.57
5206 5476 2.571653 TGGAGTTGATCAACCCACTAGG 59.428 50.000 29.77 0.00 42.06 3.02
5218 5488 1.843368 CCACTAGGGTACTGTTCGGA 58.157 55.000 0.00 0.00 0.00 4.55
5219 5489 1.749634 CCACTAGGGTACTGTTCGGAG 59.250 57.143 0.00 0.00 0.00 4.63
5220 5490 2.619849 CCACTAGGGTACTGTTCGGAGA 60.620 54.545 0.00 0.00 0.00 3.71
5221 5491 2.422832 CACTAGGGTACTGTTCGGAGAC 59.577 54.545 0.00 0.00 34.32 3.36
5233 5503 3.298958 GGAGACGCACTCATCCCA 58.701 61.111 11.34 0.00 46.54 4.37
5234 5504 1.153549 GGAGACGCACTCATCCCAC 60.154 63.158 11.34 0.00 46.54 4.61
5235 5505 1.153549 GAGACGCACTCATCCCACC 60.154 63.158 5.52 0.00 44.36 4.61
5236 5506 1.888436 GAGACGCACTCATCCCACCA 61.888 60.000 5.52 0.00 44.36 4.17
5237 5507 1.221840 GACGCACTCATCCCACCAT 59.778 57.895 0.00 0.00 0.00 3.55
5238 5508 1.078214 ACGCACTCATCCCACCATG 60.078 57.895 0.00 0.00 0.00 3.66
5239 5509 2.475466 CGCACTCATCCCACCATGC 61.475 63.158 0.00 0.00 0.00 4.06
5240 5510 2.123428 GCACTCATCCCACCATGCC 61.123 63.158 0.00 0.00 0.00 4.40
5241 5511 1.303948 CACTCATCCCACCATGCCA 59.696 57.895 0.00 0.00 0.00 4.92
5242 5512 0.323633 CACTCATCCCACCATGCCAA 60.324 55.000 0.00 0.00 0.00 4.52
5243 5513 0.033796 ACTCATCCCACCATGCCAAG 60.034 55.000 0.00 0.00 0.00 3.61
5244 5514 0.256752 CTCATCCCACCATGCCAAGA 59.743 55.000 0.00 0.00 0.00 3.02
5245 5515 0.928505 TCATCCCACCATGCCAAGAT 59.071 50.000 0.00 0.00 0.00 2.40
5246 5516 1.288633 TCATCCCACCATGCCAAGATT 59.711 47.619 0.00 0.00 0.00 2.40
5247 5517 2.112998 CATCCCACCATGCCAAGATTT 58.887 47.619 0.00 0.00 0.00 2.17
5248 5518 1.851304 TCCCACCATGCCAAGATTTC 58.149 50.000 0.00 0.00 0.00 2.17
5249 5519 1.358787 TCCCACCATGCCAAGATTTCT 59.641 47.619 0.00 0.00 0.00 2.52
5250 5520 1.753073 CCCACCATGCCAAGATTTCTC 59.247 52.381 0.00 0.00 0.00 2.87
5251 5521 1.753073 CCACCATGCCAAGATTTCTCC 59.247 52.381 0.00 0.00 0.00 3.71
5252 5522 2.622452 CCACCATGCCAAGATTTCTCCT 60.622 50.000 0.00 0.00 0.00 3.69
5253 5523 2.426024 CACCATGCCAAGATTTCTCCTG 59.574 50.000 0.00 0.00 0.00 3.86
5254 5524 2.029623 CCATGCCAAGATTTCTCCTGG 58.970 52.381 0.00 0.00 0.00 4.45
5255 5525 2.357465 CCATGCCAAGATTTCTCCTGGA 60.357 50.000 0.00 0.00 0.00 3.86
5256 5526 3.563223 CATGCCAAGATTTCTCCTGGAT 58.437 45.455 0.00 0.00 0.00 3.41
5257 5527 4.446745 CCATGCCAAGATTTCTCCTGGATA 60.447 45.833 0.00 0.00 0.00 2.59
5258 5528 5.322754 CATGCCAAGATTTCTCCTGGATAT 58.677 41.667 0.00 0.00 0.00 1.63
5259 5529 5.393068 TGCCAAGATTTCTCCTGGATATT 57.607 39.130 0.00 0.00 0.00 1.28
5260 5530 5.380043 TGCCAAGATTTCTCCTGGATATTC 58.620 41.667 0.00 0.00 0.00 1.75
5261 5531 5.133322 TGCCAAGATTTCTCCTGGATATTCT 59.867 40.000 0.00 0.00 0.00 2.40
5262 5532 5.704978 GCCAAGATTTCTCCTGGATATTCTC 59.295 44.000 0.00 0.00 0.00 2.87
5263 5533 6.237154 CCAAGATTTCTCCTGGATATTCTCC 58.763 44.000 0.00 0.00 45.19 3.71
5283 5553 9.976511 ATTCTCCATTTATTTATGTTCTGCATG 57.023 29.630 0.00 0.00 38.47 4.06
5284 5554 8.523915 TCTCCATTTATTTATGTTCTGCATGT 57.476 30.769 0.00 0.00 38.47 3.21
5285 5555 8.623903 TCTCCATTTATTTATGTTCTGCATGTC 58.376 33.333 0.00 0.00 38.47 3.06
5286 5556 8.523915 TCCATTTATTTATGTTCTGCATGTCT 57.476 30.769 0.00 0.00 38.47 3.41
5287 5557 9.625747 TCCATTTATTTATGTTCTGCATGTCTA 57.374 29.630 0.00 0.00 38.47 2.59
5288 5558 9.669353 CCATTTATTTATGTTCTGCATGTCTAC 57.331 33.333 0.00 0.00 38.47 2.59
5291 5561 9.890629 TTTATTTATGTTCTGCATGTCTACTCT 57.109 29.630 0.00 0.00 38.47 3.24
5292 5562 7.783090 ATTTATGTTCTGCATGTCTACTCTG 57.217 36.000 0.00 0.00 38.47 3.35
5293 5563 2.964740 TGTTCTGCATGTCTACTCTGC 58.035 47.619 0.00 0.00 36.45 4.26
5294 5564 2.564504 TGTTCTGCATGTCTACTCTGCT 59.435 45.455 0.00 0.00 36.84 4.24
5295 5565 3.007290 TGTTCTGCATGTCTACTCTGCTT 59.993 43.478 0.00 0.00 36.84 3.91
5296 5566 3.516981 TCTGCATGTCTACTCTGCTTC 57.483 47.619 0.00 0.00 36.84 3.86
5297 5567 3.095332 TCTGCATGTCTACTCTGCTTCT 58.905 45.455 0.00 0.00 36.84 2.85
5298 5568 3.119209 TCTGCATGTCTACTCTGCTTCTG 60.119 47.826 0.00 0.00 36.84 3.02
5299 5569 2.564504 TGCATGTCTACTCTGCTTCTGT 59.435 45.455 0.00 0.00 36.84 3.41
5300 5570 3.763897 TGCATGTCTACTCTGCTTCTGTA 59.236 43.478 0.00 0.00 36.84 2.74
5301 5571 4.220602 TGCATGTCTACTCTGCTTCTGTAA 59.779 41.667 0.00 0.00 36.84 2.41
5302 5572 4.564769 GCATGTCTACTCTGCTTCTGTAAC 59.435 45.833 0.00 0.00 33.15 2.50
5303 5573 4.421033 TGTCTACTCTGCTTCTGTAACG 57.579 45.455 0.00 0.00 0.00 3.18
5304 5574 3.190744 TGTCTACTCTGCTTCTGTAACGG 59.809 47.826 0.00 0.00 0.00 4.44
5305 5575 3.439476 GTCTACTCTGCTTCTGTAACGGA 59.561 47.826 0.00 0.00 0.00 4.69
5306 5576 4.077108 TCTACTCTGCTTCTGTAACGGAA 58.923 43.478 0.00 0.00 0.00 4.30
5307 5577 3.305398 ACTCTGCTTCTGTAACGGAAG 57.695 47.619 11.06 11.06 46.31 3.46
5319 5589 3.551259 ACGGAAGTGGGTATGCTTG 57.449 52.632 0.00 0.00 46.97 4.01
5320 5590 0.035439 ACGGAAGTGGGTATGCTTGG 60.035 55.000 0.00 0.00 46.97 3.61
5321 5591 0.748005 CGGAAGTGGGTATGCTTGGG 60.748 60.000 0.00 0.00 0.00 4.12
5322 5592 1.037579 GGAAGTGGGTATGCTTGGGC 61.038 60.000 0.00 0.00 39.26 5.36
5323 5593 1.000359 AAGTGGGTATGCTTGGGCC 60.000 57.895 0.00 0.00 37.74 5.80
5324 5594 1.799157 AAGTGGGTATGCTTGGGCCA 61.799 55.000 0.00 0.00 37.74 5.36
5325 5595 1.076044 GTGGGTATGCTTGGGCCAT 60.076 57.895 7.26 0.00 37.74 4.40
5326 5596 1.076118 TGGGTATGCTTGGGCCATG 60.076 57.895 7.26 11.78 37.74 3.66
5327 5597 1.076044 GGGTATGCTTGGGCCATGT 60.076 57.895 19.40 4.72 37.74 3.21
5328 5598 1.109323 GGGTATGCTTGGGCCATGTC 61.109 60.000 19.40 12.59 37.74 3.06
5329 5599 0.395586 GGTATGCTTGGGCCATGTCA 60.396 55.000 19.40 17.06 37.74 3.58
5330 5600 1.027357 GTATGCTTGGGCCATGTCAG 58.973 55.000 19.40 9.76 37.74 3.51
5331 5601 0.106569 TATGCTTGGGCCATGTCAGG 60.107 55.000 19.40 0.00 37.74 3.86
5332 5602 1.866483 ATGCTTGGGCCATGTCAGGA 61.866 55.000 19.40 10.25 37.74 3.86
5333 5603 1.076485 GCTTGGGCCATGTCAGGAT 60.076 57.895 19.40 0.00 0.00 3.24
5334 5604 1.389609 GCTTGGGCCATGTCAGGATG 61.390 60.000 19.40 0.00 37.54 3.51
5335 5605 1.380246 TTGGGCCATGTCAGGATGC 60.380 57.895 7.26 0.00 34.76 3.91
5336 5606 2.903855 GGGCCATGTCAGGATGCG 60.904 66.667 4.39 0.00 34.76 4.73
5337 5607 2.190313 GGCCATGTCAGGATGCGA 59.810 61.111 0.00 0.00 34.76 5.10
5338 5608 1.890979 GGCCATGTCAGGATGCGAG 60.891 63.158 0.00 0.00 34.76 5.03
5339 5609 2.541120 GCCATGTCAGGATGCGAGC 61.541 63.158 0.00 0.00 34.76 5.03
5340 5610 1.145598 CCATGTCAGGATGCGAGCT 59.854 57.895 0.00 0.00 34.76 4.09
5341 5611 0.390492 CCATGTCAGGATGCGAGCTA 59.610 55.000 0.00 0.00 34.76 3.32
5342 5612 1.495878 CATGTCAGGATGCGAGCTAC 58.504 55.000 0.00 0.00 34.76 3.58
5343 5613 0.031314 ATGTCAGGATGCGAGCTACG 59.969 55.000 0.00 0.00 45.66 3.51
5344 5614 1.299468 GTCAGGATGCGAGCTACGG 60.299 63.158 7.50 0.00 42.83 4.02
5345 5615 1.753078 TCAGGATGCGAGCTACGGT 60.753 57.895 7.50 0.00 42.83 4.83
5346 5616 0.464916 TCAGGATGCGAGCTACGGTA 60.465 55.000 7.50 0.00 42.83 4.02
5347 5617 0.384309 CAGGATGCGAGCTACGGTAA 59.616 55.000 7.50 0.00 42.83 2.85
5348 5618 1.108776 AGGATGCGAGCTACGGTAAA 58.891 50.000 7.50 0.00 42.83 2.01
5349 5619 1.479323 AGGATGCGAGCTACGGTAAAA 59.521 47.619 7.50 0.00 42.83 1.52
5350 5620 1.859080 GGATGCGAGCTACGGTAAAAG 59.141 52.381 7.50 0.00 42.83 2.27
5351 5621 1.258197 GATGCGAGCTACGGTAAAAGC 59.742 52.381 7.50 0.00 42.83 3.51
5356 5626 1.450025 AGCTACGGTAAAAGCTTGGC 58.550 50.000 0.00 0.00 46.82 4.52
5357 5627 1.161843 GCTACGGTAAAAGCTTGGCA 58.838 50.000 0.00 0.00 35.80 4.92
5358 5628 1.130561 GCTACGGTAAAAGCTTGGCAG 59.869 52.381 0.00 0.00 35.80 4.85
5359 5629 2.695359 CTACGGTAAAAGCTTGGCAGA 58.305 47.619 0.00 0.00 0.00 4.26
5360 5630 1.235724 ACGGTAAAAGCTTGGCAGAC 58.764 50.000 0.00 0.00 0.00 3.51
5361 5631 1.202770 ACGGTAAAAGCTTGGCAGACT 60.203 47.619 0.00 0.00 0.00 3.24
5362 5632 1.197721 CGGTAAAAGCTTGGCAGACTG 59.802 52.381 0.00 0.00 0.00 3.51
5363 5633 2.504367 GGTAAAAGCTTGGCAGACTGA 58.496 47.619 6.65 0.00 0.00 3.41
5364 5634 2.884639 GGTAAAAGCTTGGCAGACTGAA 59.115 45.455 6.65 0.00 0.00 3.02
5365 5635 3.507622 GGTAAAAGCTTGGCAGACTGAAT 59.492 43.478 6.65 0.00 0.00 2.57
5366 5636 3.655276 AAAAGCTTGGCAGACTGAATG 57.345 42.857 6.65 0.00 0.00 2.67
5367 5637 2.574006 AAGCTTGGCAGACTGAATGA 57.426 45.000 6.65 0.00 0.00 2.57
5368 5638 1.818642 AGCTTGGCAGACTGAATGAC 58.181 50.000 6.65 0.00 0.00 3.06
5369 5639 1.350351 AGCTTGGCAGACTGAATGACT 59.650 47.619 6.65 0.00 0.00 3.41
5370 5640 1.467734 GCTTGGCAGACTGAATGACTG 59.532 52.381 6.65 0.00 40.49 3.51
5375 5645 2.756840 CAGACTGAATGACTGCTCCA 57.243 50.000 0.00 0.00 32.43 3.86
5376 5646 2.344950 CAGACTGAATGACTGCTCCAC 58.655 52.381 0.00 0.00 32.43 4.02
5377 5647 1.277557 AGACTGAATGACTGCTCCACC 59.722 52.381 0.00 0.00 0.00 4.61
5378 5648 1.277557 GACTGAATGACTGCTCCACCT 59.722 52.381 0.00 0.00 0.00 4.00
5379 5649 1.701847 ACTGAATGACTGCTCCACCTT 59.298 47.619 0.00 0.00 0.00 3.50
5380 5650 2.289945 ACTGAATGACTGCTCCACCTTC 60.290 50.000 0.00 0.00 0.00 3.46
5381 5651 1.003580 TGAATGACTGCTCCACCTTCC 59.996 52.381 0.00 0.00 0.00 3.46
5382 5652 1.003580 GAATGACTGCTCCACCTTCCA 59.996 52.381 0.00 0.00 0.00 3.53
5383 5653 0.326264 ATGACTGCTCCACCTTCCAC 59.674 55.000 0.00 0.00 0.00 4.02
5384 5654 1.053835 TGACTGCTCCACCTTCCACA 61.054 55.000 0.00 0.00 0.00 4.17
5385 5655 0.326264 GACTGCTCCACCTTCCACAT 59.674 55.000 0.00 0.00 0.00 3.21
5386 5656 0.037303 ACTGCTCCACCTTCCACATG 59.963 55.000 0.00 0.00 0.00 3.21
5387 5657 0.037303 CTGCTCCACCTTCCACATGT 59.963 55.000 0.00 0.00 0.00 3.21
5388 5658 0.250858 TGCTCCACCTTCCACATGTG 60.251 55.000 19.31 19.31 0.00 3.21
5389 5659 0.036732 GCTCCACCTTCCACATGTGA 59.963 55.000 27.46 10.46 31.66 3.58
5390 5660 1.813513 CTCCACCTTCCACATGTGAC 58.186 55.000 27.46 0.00 31.66 3.67
5391 5661 1.072173 CTCCACCTTCCACATGTGACA 59.928 52.381 27.46 10.34 31.66 3.58
5392 5662 1.704628 TCCACCTTCCACATGTGACAT 59.295 47.619 27.46 4.91 31.66 3.06
5393 5663 2.086869 CCACCTTCCACATGTGACATC 58.913 52.381 27.46 0.00 31.66 3.06
5394 5664 2.086869 CACCTTCCACATGTGACATCC 58.913 52.381 27.46 0.00 31.66 3.51
5395 5665 1.988107 ACCTTCCACATGTGACATCCT 59.012 47.619 27.46 1.91 0.00 3.24
5396 5666 3.055167 CACCTTCCACATGTGACATCCTA 60.055 47.826 27.46 3.31 31.66 2.94
5397 5667 3.055094 ACCTTCCACATGTGACATCCTAC 60.055 47.826 27.46 0.00 0.00 3.18
5398 5668 3.198635 CCTTCCACATGTGACATCCTACT 59.801 47.826 27.46 0.00 0.00 2.57
5399 5669 4.405680 CCTTCCACATGTGACATCCTACTA 59.594 45.833 27.46 0.00 0.00 1.82
5400 5670 5.452496 CCTTCCACATGTGACATCCTACTAG 60.452 48.000 27.46 5.73 0.00 2.57
5401 5671 4.610333 TCCACATGTGACATCCTACTAGT 58.390 43.478 27.46 0.00 0.00 2.57
5402 5672 4.402474 TCCACATGTGACATCCTACTAGTG 59.598 45.833 27.46 5.08 0.00 2.74
5403 5673 4.442052 CCACATGTGACATCCTACTAGTGG 60.442 50.000 27.46 12.58 36.70 4.00
5404 5674 4.160439 CACATGTGACATCCTACTAGTGGT 59.840 45.833 21.64 0.00 0.00 4.16
5405 5675 4.777896 ACATGTGACATCCTACTAGTGGTT 59.222 41.667 5.39 0.00 0.00 3.67
5406 5676 4.801330 TGTGACATCCTACTAGTGGTTG 57.199 45.455 5.39 12.07 0.00 3.77
5407 5677 3.513912 TGTGACATCCTACTAGTGGTTGG 59.486 47.826 5.39 0.55 41.17 3.77
5408 5678 3.104512 TGACATCCTACTAGTGGTTGGG 58.895 50.000 5.39 0.28 40.41 4.12
5409 5679 2.434702 GACATCCTACTAGTGGTTGGGG 59.565 54.545 5.39 3.35 40.41 4.96
5410 5680 1.141053 CATCCTACTAGTGGTTGGGGC 59.859 57.143 5.39 0.00 40.41 5.80
5411 5681 0.974010 TCCTACTAGTGGTTGGGGCG 60.974 60.000 5.39 0.00 40.41 6.13
5412 5682 1.153429 CTACTAGTGGTTGGGGCGC 60.153 63.158 5.39 0.00 0.00 6.53
5413 5683 2.588856 CTACTAGTGGTTGGGGCGCC 62.589 65.000 21.18 21.18 0.00 6.53
5414 5684 4.028490 CTAGTGGTTGGGGCGCCA 62.028 66.667 30.85 20.22 0.00 5.69
5435 5705 3.659092 CTGTGGCGCCGCTTGAAA 61.659 61.111 37.39 18.48 0.00 2.69
5436 5706 3.599792 CTGTGGCGCCGCTTGAAAG 62.600 63.158 37.39 23.61 0.00 2.62
5437 5707 4.404654 GTGGCGCCGCTTGAAAGG 62.405 66.667 32.27 0.00 0.00 3.11
5438 5708 4.634703 TGGCGCCGCTTGAAAGGA 62.635 61.111 23.90 0.00 0.00 3.36
5439 5709 3.361977 GGCGCCGCTTGAAAGGAA 61.362 61.111 12.58 0.00 0.00 3.36
5440 5710 2.176792 GCGCCGCTTGAAAGGAAG 59.823 61.111 0.00 0.00 0.00 3.46
5441 5711 2.176792 CGCCGCTTGAAAGGAAGC 59.823 61.111 0.00 0.00 44.21 3.86
5442 5712 2.328099 CGCCGCTTGAAAGGAAGCT 61.328 57.895 0.00 0.00 45.26 3.74
5443 5713 1.019278 CGCCGCTTGAAAGGAAGCTA 61.019 55.000 0.00 0.00 45.26 3.32
5444 5714 1.383523 GCCGCTTGAAAGGAAGCTAT 58.616 50.000 0.00 0.00 45.26 2.97
5445 5715 1.064654 GCCGCTTGAAAGGAAGCTATG 59.935 52.381 0.00 0.00 45.26 2.23
5446 5716 1.064654 CCGCTTGAAAGGAAGCTATGC 59.935 52.381 0.00 0.00 45.26 3.14
5447 5717 1.267732 CGCTTGAAAGGAAGCTATGCG 60.268 52.381 0.00 0.00 45.26 4.73
5448 5718 1.532713 GCTTGAAAGGAAGCTATGCGC 60.533 52.381 0.00 0.00 44.26 6.09
5449 5719 1.739466 CTTGAAAGGAAGCTATGCGCA 59.261 47.619 14.96 14.96 42.61 6.09
5450 5720 2.042686 TGAAAGGAAGCTATGCGCAT 57.957 45.000 28.23 28.23 42.61 4.73
5451 5721 2.368439 TGAAAGGAAGCTATGCGCATT 58.632 42.857 30.42 11.59 42.61 3.56
5452 5722 2.754552 TGAAAGGAAGCTATGCGCATTT 59.245 40.909 30.42 17.32 42.61 2.32
5453 5723 3.193267 TGAAAGGAAGCTATGCGCATTTT 59.807 39.130 30.42 20.10 42.61 1.82
5454 5724 3.874392 AAGGAAGCTATGCGCATTTTT 57.126 38.095 30.42 19.45 42.61 1.94
5486 5756 3.354131 GACATGAGGTCTTCGGCTC 57.646 57.895 0.00 0.00 43.46 4.70
5487 5757 0.179097 GACATGAGGTCTTCGGCTCC 60.179 60.000 0.00 0.00 43.46 4.70
5488 5758 0.904865 ACATGAGGTCTTCGGCTCCA 60.905 55.000 0.00 0.00 0.00 3.86
5489 5759 0.467384 CATGAGGTCTTCGGCTCCAT 59.533 55.000 0.00 0.00 0.00 3.41
5490 5760 0.755686 ATGAGGTCTTCGGCTCCATC 59.244 55.000 0.00 0.00 0.00 3.51
5491 5761 0.324738 TGAGGTCTTCGGCTCCATCT 60.325 55.000 0.00 0.00 0.00 2.90
5492 5762 1.063942 TGAGGTCTTCGGCTCCATCTA 60.064 52.381 0.00 0.00 0.00 1.98
5493 5763 2.032620 GAGGTCTTCGGCTCCATCTAA 58.967 52.381 0.00 0.00 0.00 2.10
5494 5764 2.431057 GAGGTCTTCGGCTCCATCTAAA 59.569 50.000 0.00 0.00 0.00 1.85
5495 5765 2.838202 AGGTCTTCGGCTCCATCTAAAA 59.162 45.455 0.00 0.00 0.00 1.52
5496 5766 3.263425 AGGTCTTCGGCTCCATCTAAAAA 59.737 43.478 0.00 0.00 0.00 1.94
5521 5791 9.807921 AAACTATACCAGAAAGAAAAATCCTCA 57.192 29.630 0.00 0.00 0.00 3.86
5522 5792 8.794335 ACTATACCAGAAAGAAAAATCCTCAC 57.206 34.615 0.00 0.00 0.00 3.51
5523 5793 7.829706 ACTATACCAGAAAGAAAAATCCTCACC 59.170 37.037 0.00 0.00 0.00 4.02
5524 5794 5.066913 ACCAGAAAGAAAAATCCTCACCT 57.933 39.130 0.00 0.00 0.00 4.00
5525 5795 5.458595 ACCAGAAAGAAAAATCCTCACCTT 58.541 37.500 0.00 0.00 0.00 3.50
5526 5796 5.536538 ACCAGAAAGAAAAATCCTCACCTTC 59.463 40.000 0.00 0.00 0.00 3.46
5527 5797 5.536161 CCAGAAAGAAAAATCCTCACCTTCA 59.464 40.000 0.00 0.00 0.00 3.02
5528 5798 6.210185 CCAGAAAGAAAAATCCTCACCTTCAT 59.790 38.462 0.00 0.00 0.00 2.57
5529 5799 7.311408 CAGAAAGAAAAATCCTCACCTTCATC 58.689 38.462 0.00 0.00 0.00 2.92
5530 5800 7.176340 CAGAAAGAAAAATCCTCACCTTCATCT 59.824 37.037 0.00 0.00 0.00 2.90
5531 5801 7.727634 AGAAAGAAAAATCCTCACCTTCATCTT 59.272 33.333 0.00 0.00 0.00 2.40
5532 5802 8.940397 AAAGAAAAATCCTCACCTTCATCTTA 57.060 30.769 0.00 0.00 0.00 2.10
5533 5803 8.940397 AAGAAAAATCCTCACCTTCATCTTAA 57.060 30.769 0.00 0.00 0.00 1.85
5534 5804 8.940397 AGAAAAATCCTCACCTTCATCTTAAA 57.060 30.769 0.00 0.00 0.00 1.52
5535 5805 9.367160 AGAAAAATCCTCACCTTCATCTTAAAA 57.633 29.630 0.00 0.00 0.00 1.52
5536 5806 9.981114 GAAAAATCCTCACCTTCATCTTAAAAA 57.019 29.630 0.00 0.00 0.00 1.94
5537 5807 9.987272 AAAAATCCTCACCTTCATCTTAAAAAG 57.013 29.630 0.00 0.00 0.00 2.27
5538 5808 8.940397 AAATCCTCACCTTCATCTTAAAAAGA 57.060 30.769 0.00 0.00 42.69 2.52
5539 5809 8.940397 AATCCTCACCTTCATCTTAAAAAGAA 57.060 30.769 0.00 0.00 41.63 2.52
5540 5810 7.986085 TCCTCACCTTCATCTTAAAAAGAAG 57.014 36.000 0.00 0.00 41.63 2.85
5541 5811 7.518188 TCCTCACCTTCATCTTAAAAAGAAGT 58.482 34.615 0.00 0.00 41.63 3.01
5542 5812 8.656806 TCCTCACCTTCATCTTAAAAAGAAGTA 58.343 33.333 0.00 0.00 41.63 2.24
5543 5813 9.284968 CCTCACCTTCATCTTAAAAAGAAGTAA 57.715 33.333 0.00 0.00 41.63 2.24
5568 5838 7.671495 AAAAGAAACAAAATACCATCATGGC 57.329 32.000 2.52 0.00 42.67 4.40
5569 5839 5.343307 AGAAACAAAATACCATCATGGCC 57.657 39.130 2.52 0.00 42.67 5.36
5570 5840 5.025453 AGAAACAAAATACCATCATGGCCT 58.975 37.500 2.52 0.00 42.67 5.19
5571 5841 6.194235 AGAAACAAAATACCATCATGGCCTA 58.806 36.000 2.52 0.00 42.67 3.93
5572 5842 5.852282 AACAAAATACCATCATGGCCTAC 57.148 39.130 2.52 0.00 42.67 3.18
5573 5843 4.215109 ACAAAATACCATCATGGCCTACC 58.785 43.478 2.52 0.00 42.67 3.18
5586 5856 4.135153 CTACCAGCGAGCGCCACT 62.135 66.667 11.66 0.00 43.17 4.00
5587 5857 3.649277 CTACCAGCGAGCGCCACTT 62.649 63.158 11.66 0.00 43.17 3.16
5588 5858 3.234630 TACCAGCGAGCGCCACTTT 62.235 57.895 11.66 0.00 43.17 2.66
5589 5859 4.093952 CCAGCGAGCGCCACTTTG 62.094 66.667 11.66 2.73 43.17 2.77
5590 5860 4.748679 CAGCGAGCGCCACTTTGC 62.749 66.667 11.66 0.00 43.17 3.68
5592 5862 4.107051 GCGAGCGCCACTTTGCAT 62.107 61.111 2.29 0.00 34.56 3.96
5593 5863 2.749865 GCGAGCGCCACTTTGCATA 61.750 57.895 2.29 0.00 34.56 3.14
5594 5864 1.060937 CGAGCGCCACTTTGCATAC 59.939 57.895 2.29 0.00 0.00 2.39
5595 5865 1.060937 GAGCGCCACTTTGCATACG 59.939 57.895 2.29 0.00 0.00 3.06
5596 5866 2.576847 GCGCCACTTTGCATACGC 60.577 61.111 0.00 0.00 39.49 4.42
5597 5867 2.100216 CGCCACTTTGCATACGCC 59.900 61.111 0.00 0.00 37.32 5.68
5598 5868 2.398554 CGCCACTTTGCATACGCCT 61.399 57.895 0.00 0.00 37.32 5.52
5599 5869 1.429423 GCCACTTTGCATACGCCTC 59.571 57.895 0.00 0.00 37.32 4.70
5600 5870 1.993369 GCCACTTTGCATACGCCTCC 61.993 60.000 0.00 0.00 37.32 4.30
5601 5871 0.676466 CCACTTTGCATACGCCTCCA 60.676 55.000 0.00 0.00 37.32 3.86
5602 5872 1.382522 CACTTTGCATACGCCTCCAT 58.617 50.000 0.00 0.00 37.32 3.41
5603 5873 1.745087 CACTTTGCATACGCCTCCATT 59.255 47.619 0.00 0.00 37.32 3.16
5604 5874 2.942376 CACTTTGCATACGCCTCCATTA 59.058 45.455 0.00 0.00 37.32 1.90
5605 5875 3.376859 CACTTTGCATACGCCTCCATTAA 59.623 43.478 0.00 0.00 37.32 1.40
5606 5876 4.013728 ACTTTGCATACGCCTCCATTAAA 58.986 39.130 0.00 0.00 37.32 1.52
5607 5877 4.461081 ACTTTGCATACGCCTCCATTAAAA 59.539 37.500 0.00 0.00 37.32 1.52
5608 5878 5.047660 ACTTTGCATACGCCTCCATTAAAAA 60.048 36.000 0.00 0.00 37.32 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 8.531982 ACTCAAGCTGTAGAAATGTAACTATCA 58.468 33.333 2.72 0.00 0.00 2.15
228 229 9.408648 CAAAATTCTAGGGACCTTATGTATTGT 57.591 33.333 0.00 0.00 0.00 2.71
246 247 8.655935 ATTATCAAACCTGGACTCAAAATTCT 57.344 30.769 0.00 0.00 0.00 2.40
286 287 2.158219 TGTCCACTCAAGGTCCCTAGAA 60.158 50.000 0.00 0.00 0.00 2.10
316 317 2.952116 ACATAGCACTAGAGAGGGACC 58.048 52.381 0.00 0.00 0.00 4.46
323 324 6.716934 TTCCCTTTCTACATAGCACTAGAG 57.283 41.667 0.00 0.00 0.00 2.43
332 333 3.678806 CGCACAGCTTCCCTTTCTACATA 60.679 47.826 0.00 0.00 0.00 2.29
345 346 1.065701 CCTATAGACGTCGCACAGCTT 59.934 52.381 10.46 0.00 0.00 3.74
409 410 3.297134 TGCATAAGGTCCCTGGAATTC 57.703 47.619 0.00 0.00 0.00 2.17
414 415 2.738743 ACAAATGCATAAGGTCCCTGG 58.261 47.619 0.00 0.00 0.00 4.45
980 1030 5.147032 CCATCTCCTGTTAGATCCTCTCTT 58.853 45.833 0.00 0.00 33.87 2.85
1019 1069 0.596577 AAGCATCATCATCGCCATGC 59.403 50.000 0.00 0.00 41.72 4.06
1077 1127 0.317799 CCATGAGGAGGCTCATCTCG 59.682 60.000 27.15 18.15 41.65 4.04
1180 1230 7.060421 AGTAATATATTTGGGTGGTGAGTTGG 58.940 38.462 2.68 0.00 0.00 3.77
1181 1231 7.228706 GGAGTAATATATTTGGGTGGTGAGTTG 59.771 40.741 2.68 0.00 0.00 3.16
1182 1232 7.287810 GGAGTAATATATTTGGGTGGTGAGTT 58.712 38.462 2.68 0.00 0.00 3.01
1183 1233 6.183361 GGGAGTAATATATTTGGGTGGTGAGT 60.183 42.308 2.68 0.00 0.00 3.41
1184 1234 6.044404 AGGGAGTAATATATTTGGGTGGTGAG 59.956 42.308 2.68 0.00 0.00 3.51
1185 1235 5.914716 AGGGAGTAATATATTTGGGTGGTGA 59.085 40.000 2.68 0.00 0.00 4.02
1186 1236 6.200878 AGGGAGTAATATATTTGGGTGGTG 57.799 41.667 2.68 0.00 0.00 4.17
1187 1237 5.312443 GGAGGGAGTAATATATTTGGGTGGT 59.688 44.000 2.68 0.00 0.00 4.16
1255 1305 5.900437 ACTCCCTCCGATCCATATTACTTA 58.100 41.667 0.00 0.00 0.00 2.24
1262 1312 2.714793 TGAGTACTCCCTCCGATCCATA 59.285 50.000 20.11 0.00 0.00 2.74
1328 1378 3.198635 TGAGGCTGATTAGTTTCCTCCAG 59.801 47.826 0.00 0.00 41.90 3.86
1378 1428 6.713903 TCTCTAGACTCGTCAGGTTTAAAGAA 59.286 38.462 0.00 0.00 0.00 2.52
1389 1439 8.051901 TCATATTTTGTTCTCTAGACTCGTCA 57.948 34.615 0.00 0.00 0.00 4.35
1406 1456 9.965902 ACTCTTAGGAATGTTGTCTCATATTTT 57.034 29.630 0.00 0.00 0.00 1.82
1417 1467 4.333926 GCTTGGCTACTCTTAGGAATGTTG 59.666 45.833 0.00 0.00 0.00 3.33
1506 1556 8.068380 GGAACGCAATAGTGATAGGAAATAAAC 58.932 37.037 0.00 0.00 0.00 2.01
1813 1866 5.240403 GCTCACCTCTTCAACTCTTGATTTT 59.760 40.000 0.00 0.00 39.84 1.82
1851 1904 6.372659 GGCATCGGTCATGATCTTGTTATAAT 59.627 38.462 4.09 0.00 33.80 1.28
1892 1945 9.927081 AATATCTTCCATGTAAGAATTCACCTT 57.073 29.630 4.70 0.00 38.90 3.50
2239 2292 6.059787 AGATCATCTACTTGCACTTCCTTT 57.940 37.500 0.00 0.00 0.00 3.11
2263 2316 3.449377 GCTCTTCTCTAAGGTAGTTGCCT 59.551 47.826 0.00 0.00 41.41 4.75
2384 2437 4.711355 AGTTGTTACTATTACCCGGCTACA 59.289 41.667 0.00 0.00 31.21 2.74
2407 2460 3.869912 GCTCAGCCAAACCAACATCTCTA 60.870 47.826 0.00 0.00 0.00 2.43
2646 2700 5.007724 GGGATCTGCTTGTAAATACTTTCCG 59.992 44.000 0.00 0.00 0.00 4.30
2707 2761 3.707316 ACTCAGAGTGACTATGCTCCTT 58.293 45.455 0.91 0.00 32.47 3.36
2713 2767 9.862371 AAATAGTTGTAACTCAGAGTGACTATG 57.138 33.333 17.78 0.00 40.37 2.23
3413 3470 4.095036 GCTATGCAGACTTTGGAGTTTACC 59.905 45.833 0.00 0.00 35.88 2.85
3610 3688 2.843545 GGCACCCTCAAACCCTCA 59.156 61.111 0.00 0.00 0.00 3.86
3955 4051 4.948062 ATGGCTCCCTTTAAGGTAAAGT 57.052 40.909 10.40 0.00 42.73 2.66
4059 4156 0.250338 AAACACGAGCTTCTCCCCAC 60.250 55.000 0.00 0.00 0.00 4.61
4246 4343 3.866651 ACCATCTCCAAGTGAAATCTCG 58.133 45.455 0.00 0.00 0.00 4.04
4264 4361 2.741145 AGTTTGGCCACTTTACAACCA 58.259 42.857 3.88 0.00 0.00 3.67
4371 4471 2.092323 CACTGGAGACATCGGTGACTA 58.908 52.381 0.65 0.00 41.51 2.59
4422 4522 3.399330 TCGGAAAGAACAACTGATGGTC 58.601 45.455 0.00 0.00 46.76 4.02
4448 4548 2.584694 GCGCTCTCCTACTGCTGC 60.585 66.667 0.00 0.00 0.00 5.25
4449 4549 1.065600 GAGCGCTCTCCTACTGCTG 59.934 63.158 29.88 0.00 35.73 4.41
4450 4550 3.520402 GAGCGCTCTCCTACTGCT 58.480 61.111 29.88 0.00 38.89 4.24
4500 4600 5.347907 ACTGAACGAAACCGAAATTAGCTAG 59.652 40.000 0.00 0.00 0.00 3.42
4501 4601 5.119588 CACTGAACGAAACCGAAATTAGCTA 59.880 40.000 0.00 0.00 0.00 3.32
4566 4666 7.619302 AGAAGAGAAGAGAGATGGATTGTAACT 59.381 37.037 0.00 0.00 0.00 2.24
4567 4667 7.781056 AGAAGAGAAGAGAGATGGATTGTAAC 58.219 38.462 0.00 0.00 0.00 2.50
4568 4668 7.969690 AGAAGAGAAGAGAGATGGATTGTAA 57.030 36.000 0.00 0.00 0.00 2.41
4569 4669 9.653516 AATAGAAGAGAAGAGAGATGGATTGTA 57.346 33.333 0.00 0.00 0.00 2.41
4570 4670 8.551682 AATAGAAGAGAAGAGAGATGGATTGT 57.448 34.615 0.00 0.00 0.00 2.71
4571 4671 9.835389 AAAATAGAAGAGAAGAGAGATGGATTG 57.165 33.333 0.00 0.00 0.00 2.67
4608 4708 2.854214 CGCAGATCGTCTTCGCTGC 61.854 63.158 0.00 0.00 43.94 5.25
4709 4809 1.532868 GTATAGCATTGGAAGGCAGCG 59.467 52.381 0.00 0.00 38.35 5.18
4711 4811 3.144506 CCTGTATAGCATTGGAAGGCAG 58.855 50.000 0.00 0.00 38.35 4.85
4713 4813 3.214696 ACCTGTATAGCATTGGAAGGC 57.785 47.619 0.00 0.00 35.64 4.35
4722 4822 5.363868 AGATTTGAGCAGTACCTGTATAGCA 59.636 40.000 0.00 0.00 33.43 3.49
4735 4835 6.980397 ACCAAAGTAAAACAAGATTTGAGCAG 59.020 34.615 0.00 0.00 33.69 4.24
4736 4836 6.872920 ACCAAAGTAAAACAAGATTTGAGCA 58.127 32.000 0.00 0.00 33.69 4.26
4792 4892 6.658831 CACCTAATAACACAACACTGAACTG 58.341 40.000 0.00 0.00 0.00 3.16
4990 5096 6.506147 TGACCAATTGCAGCATAACAATATC 58.494 36.000 0.00 0.00 35.49 1.63
5016 5122 4.279420 AGCAAACTTGGAAGATTCAACCTC 59.721 41.667 0.00 0.00 0.00 3.85
5082 5352 0.249120 CCAGAAGATACGTGGCACCA 59.751 55.000 12.86 0.00 0.00 4.17
5112 5382 4.702612 AGATCTTGCTCTGTCTCTTTCGTA 59.297 41.667 0.00 0.00 0.00 3.43
5118 5388 3.966979 TCTGAGATCTTGCTCTGTCTCT 58.033 45.455 0.00 0.00 38.29 3.10
5125 5395 8.206325 TGTAATTTCAATCTGAGATCTTGCTC 57.794 34.615 0.00 0.00 35.46 4.26
5175 5445 4.321230 GTTGATCAACTCCATGGTGAAACC 60.321 45.833 27.66 7.36 46.58 3.27
5176 5446 4.321230 GGTTGATCAACTCCATGGTGAAAC 60.321 45.833 31.81 13.48 46.58 2.78
5177 5447 3.826157 GGTTGATCAACTCCATGGTGAAA 59.174 43.478 31.81 2.71 46.58 2.69
5178 5448 3.420893 GGTTGATCAACTCCATGGTGAA 58.579 45.455 31.81 5.88 46.58 3.18
5180 5450 2.094675 GGGTTGATCAACTCCATGGTG 58.905 52.381 31.81 12.42 40.94 4.17
5181 5451 1.710244 TGGGTTGATCAACTCCATGGT 59.290 47.619 30.85 0.00 41.01 3.55
5182 5452 2.094675 GTGGGTTGATCAACTCCATGG 58.905 52.381 32.97 4.97 41.01 3.66
5183 5453 3.077484 AGTGGGTTGATCAACTCCATG 57.923 47.619 32.97 0.00 41.01 3.66
5184 5454 3.200825 CCTAGTGGGTTGATCAACTCCAT 59.799 47.826 32.97 24.93 41.01 3.41
5185 5455 2.571653 CCTAGTGGGTTGATCAACTCCA 59.428 50.000 30.85 30.23 41.01 3.86
5186 5456 3.268023 CCTAGTGGGTTGATCAACTCC 57.732 52.381 30.85 28.46 41.01 3.85
5199 5469 1.749634 CTCCGAACAGTACCCTAGTGG 59.250 57.143 0.00 0.00 41.37 4.00
5200 5470 2.422832 GTCTCCGAACAGTACCCTAGTG 59.577 54.545 0.00 0.00 35.25 2.74
5201 5471 2.720915 GTCTCCGAACAGTACCCTAGT 58.279 52.381 0.00 0.00 0.00 2.57
5202 5472 1.669779 CGTCTCCGAACAGTACCCTAG 59.330 57.143 0.00 0.00 35.63 3.02
5203 5473 1.742761 CGTCTCCGAACAGTACCCTA 58.257 55.000 0.00 0.00 35.63 3.53
5204 5474 1.593296 GCGTCTCCGAACAGTACCCT 61.593 60.000 0.00 0.00 35.63 4.34
5205 5475 1.153881 GCGTCTCCGAACAGTACCC 60.154 63.158 0.00 0.00 35.63 3.69
5206 5476 0.731855 GTGCGTCTCCGAACAGTACC 60.732 60.000 0.00 0.00 42.53 3.34
5207 5477 0.240411 AGTGCGTCTCCGAACAGTAC 59.760 55.000 0.00 0.00 45.61 2.73
5208 5478 0.520404 GAGTGCGTCTCCGAACAGTA 59.480 55.000 0.00 0.00 45.61 2.74
5209 5479 1.286260 GAGTGCGTCTCCGAACAGT 59.714 57.895 0.00 0.00 45.61 3.55
5210 5480 0.109086 ATGAGTGCGTCTCCGAACAG 60.109 55.000 6.32 0.00 45.61 3.16
5211 5481 0.109272 GATGAGTGCGTCTCCGAACA 60.109 55.000 6.32 0.00 45.61 3.18
5212 5482 0.802607 GGATGAGTGCGTCTCCGAAC 60.803 60.000 6.32 0.00 43.38 3.95
5213 5483 1.511305 GGATGAGTGCGTCTCCGAA 59.489 57.895 6.32 0.00 42.12 4.30
5214 5484 2.415608 GGGATGAGTGCGTCTCCGA 61.416 63.158 6.32 0.00 42.12 4.55
5215 5485 2.105128 GGGATGAGTGCGTCTCCG 59.895 66.667 6.32 0.00 42.12 4.63
5216 5486 1.153549 GTGGGATGAGTGCGTCTCC 60.154 63.158 6.32 2.37 42.12 3.71
5217 5487 1.153549 GGTGGGATGAGTGCGTCTC 60.154 63.158 2.35 2.35 43.03 3.36
5218 5488 1.267574 ATGGTGGGATGAGTGCGTCT 61.268 55.000 0.00 0.00 0.00 4.18
5219 5489 1.091771 CATGGTGGGATGAGTGCGTC 61.092 60.000 0.00 0.00 0.00 5.19
5220 5490 1.078214 CATGGTGGGATGAGTGCGT 60.078 57.895 0.00 0.00 0.00 5.24
5221 5491 2.475466 GCATGGTGGGATGAGTGCG 61.475 63.158 0.00 0.00 0.00 5.34
5222 5492 2.123428 GGCATGGTGGGATGAGTGC 61.123 63.158 0.00 0.00 0.00 4.40
5223 5493 0.323633 TTGGCATGGTGGGATGAGTG 60.324 55.000 0.00 0.00 0.00 3.51
5224 5494 0.033796 CTTGGCATGGTGGGATGAGT 60.034 55.000 0.00 0.00 0.00 3.41
5225 5495 0.256752 TCTTGGCATGGTGGGATGAG 59.743 55.000 0.00 0.00 0.00 2.90
5226 5496 0.928505 ATCTTGGCATGGTGGGATGA 59.071 50.000 0.00 0.00 0.00 2.92
5227 5497 1.784358 AATCTTGGCATGGTGGGATG 58.216 50.000 0.00 0.00 0.00 3.51
5228 5498 2.023695 AGAAATCTTGGCATGGTGGGAT 60.024 45.455 0.00 0.00 0.00 3.85
5229 5499 1.358787 AGAAATCTTGGCATGGTGGGA 59.641 47.619 0.00 0.00 0.00 4.37
5230 5500 1.753073 GAGAAATCTTGGCATGGTGGG 59.247 52.381 0.00 0.00 0.00 4.61
5231 5501 1.753073 GGAGAAATCTTGGCATGGTGG 59.247 52.381 0.00 0.00 0.00 4.61
5232 5502 2.426024 CAGGAGAAATCTTGGCATGGTG 59.574 50.000 0.00 0.00 0.00 4.17
5233 5503 2.622452 CCAGGAGAAATCTTGGCATGGT 60.622 50.000 0.00 0.00 30.12 3.55
5234 5504 2.029623 CCAGGAGAAATCTTGGCATGG 58.970 52.381 0.00 0.00 30.12 3.66
5235 5505 3.008835 TCCAGGAGAAATCTTGGCATG 57.991 47.619 1.73 0.00 36.87 4.06
5236 5506 3.967467 ATCCAGGAGAAATCTTGGCAT 57.033 42.857 0.00 0.00 36.87 4.40
5237 5507 5.133322 AGAATATCCAGGAGAAATCTTGGCA 59.867 40.000 0.00 0.00 36.87 4.92
5238 5508 5.629125 AGAATATCCAGGAGAAATCTTGGC 58.371 41.667 0.00 0.00 36.87 4.52
5257 5527 9.976511 CATGCAGAACATAAATAAATGGAGAAT 57.023 29.630 0.00 0.00 36.64 2.40
5258 5528 8.970020 ACATGCAGAACATAAATAAATGGAGAA 58.030 29.630 0.00 0.00 36.64 2.87
5259 5529 8.523915 ACATGCAGAACATAAATAAATGGAGA 57.476 30.769 0.00 0.00 36.64 3.71
5260 5530 8.627403 AGACATGCAGAACATAAATAAATGGAG 58.373 33.333 0.00 0.00 36.64 3.86
5261 5531 8.523915 AGACATGCAGAACATAAATAAATGGA 57.476 30.769 0.00 0.00 36.64 3.41
5262 5532 9.669353 GTAGACATGCAGAACATAAATAAATGG 57.331 33.333 0.00 0.00 36.64 3.16
5265 5535 9.890629 AGAGTAGACATGCAGAACATAAATAAA 57.109 29.630 0.00 0.00 36.64 1.40
5266 5536 9.317936 CAGAGTAGACATGCAGAACATAAATAA 57.682 33.333 0.00 0.00 36.64 1.40
5267 5537 7.439356 GCAGAGTAGACATGCAGAACATAAATA 59.561 37.037 0.00 0.00 36.64 1.40
5268 5538 6.259608 GCAGAGTAGACATGCAGAACATAAAT 59.740 38.462 0.00 0.00 36.64 1.40
5269 5539 5.582269 GCAGAGTAGACATGCAGAACATAAA 59.418 40.000 0.00 0.00 36.64 1.40
5270 5540 5.105187 AGCAGAGTAGACATGCAGAACATAA 60.105 40.000 11.11 0.00 42.45 1.90
5271 5541 4.403752 AGCAGAGTAGACATGCAGAACATA 59.596 41.667 11.11 0.00 42.45 2.29
5272 5542 3.197333 AGCAGAGTAGACATGCAGAACAT 59.803 43.478 11.11 0.00 42.45 2.71
5273 5543 2.564504 AGCAGAGTAGACATGCAGAACA 59.435 45.455 11.11 0.00 42.45 3.18
5274 5544 3.244033 AGCAGAGTAGACATGCAGAAC 57.756 47.619 11.11 0.00 42.45 3.01
5275 5545 3.513119 AGAAGCAGAGTAGACATGCAGAA 59.487 43.478 11.11 0.00 42.45 3.02
5276 5546 3.095332 AGAAGCAGAGTAGACATGCAGA 58.905 45.455 11.11 0.00 42.45 4.26
5277 5547 3.188492 CAGAAGCAGAGTAGACATGCAG 58.812 50.000 11.11 0.00 42.45 4.41
5278 5548 2.564504 ACAGAAGCAGAGTAGACATGCA 59.435 45.455 11.11 0.00 42.45 3.96
5279 5549 3.244033 ACAGAAGCAGAGTAGACATGC 57.756 47.619 0.00 2.58 40.29 4.06
5280 5550 4.795795 CGTTACAGAAGCAGAGTAGACATG 59.204 45.833 0.00 0.00 0.00 3.21
5281 5551 4.142359 CCGTTACAGAAGCAGAGTAGACAT 60.142 45.833 0.00 0.00 0.00 3.06
5282 5552 3.190744 CCGTTACAGAAGCAGAGTAGACA 59.809 47.826 0.00 0.00 0.00 3.41
5283 5553 3.439476 TCCGTTACAGAAGCAGAGTAGAC 59.561 47.826 0.00 0.00 0.00 2.59
5284 5554 3.682696 TCCGTTACAGAAGCAGAGTAGA 58.317 45.455 0.00 0.00 0.00 2.59
5285 5555 4.082679 ACTTCCGTTACAGAAGCAGAGTAG 60.083 45.833 8.12 0.00 43.75 2.57
5286 5556 3.825014 ACTTCCGTTACAGAAGCAGAGTA 59.175 43.478 8.12 0.00 43.75 2.59
5287 5557 2.628657 ACTTCCGTTACAGAAGCAGAGT 59.371 45.455 8.12 0.00 43.75 3.24
5288 5558 2.989840 CACTTCCGTTACAGAAGCAGAG 59.010 50.000 8.12 0.00 43.75 3.35
5289 5559 2.288825 CCACTTCCGTTACAGAAGCAGA 60.289 50.000 8.12 0.00 43.75 4.26
5290 5560 2.069273 CCACTTCCGTTACAGAAGCAG 58.931 52.381 8.12 2.17 43.75 4.24
5291 5561 1.270625 CCCACTTCCGTTACAGAAGCA 60.271 52.381 8.12 0.00 43.75 3.91
5292 5562 1.270678 ACCCACTTCCGTTACAGAAGC 60.271 52.381 8.12 0.00 43.75 3.86
5293 5563 2.833631 ACCCACTTCCGTTACAGAAG 57.166 50.000 6.77 6.77 45.12 2.85
5294 5564 3.618019 GCATACCCACTTCCGTTACAGAA 60.618 47.826 0.00 0.00 0.00 3.02
5295 5565 2.093869 GCATACCCACTTCCGTTACAGA 60.094 50.000 0.00 0.00 0.00 3.41
5296 5566 2.093658 AGCATACCCACTTCCGTTACAG 60.094 50.000 0.00 0.00 0.00 2.74
5297 5567 1.903860 AGCATACCCACTTCCGTTACA 59.096 47.619 0.00 0.00 0.00 2.41
5298 5568 2.676342 CAAGCATACCCACTTCCGTTAC 59.324 50.000 0.00 0.00 0.00 2.50
5299 5569 2.355310 CCAAGCATACCCACTTCCGTTA 60.355 50.000 0.00 0.00 0.00 3.18
5300 5570 1.613255 CCAAGCATACCCACTTCCGTT 60.613 52.381 0.00 0.00 0.00 4.44
5301 5571 0.035439 CCAAGCATACCCACTTCCGT 60.035 55.000 0.00 0.00 0.00 4.69
5302 5572 0.748005 CCCAAGCATACCCACTTCCG 60.748 60.000 0.00 0.00 0.00 4.30
5303 5573 1.037579 GCCCAAGCATACCCACTTCC 61.038 60.000 0.00 0.00 39.53 3.46
5304 5574 1.037579 GGCCCAAGCATACCCACTTC 61.038 60.000 0.00 0.00 42.56 3.01
5305 5575 1.000359 GGCCCAAGCATACCCACTT 60.000 57.895 0.00 0.00 42.56 3.16
5306 5576 1.583784 ATGGCCCAAGCATACCCACT 61.584 55.000 0.00 0.00 42.56 4.00
5307 5577 1.076044 ATGGCCCAAGCATACCCAC 60.076 57.895 0.00 0.00 42.56 4.61
5308 5578 1.076118 CATGGCCCAAGCATACCCA 60.076 57.895 0.00 0.00 42.56 4.51
5309 5579 1.076044 ACATGGCCCAAGCATACCC 60.076 57.895 0.00 0.00 42.56 3.69
5310 5580 0.395586 TGACATGGCCCAAGCATACC 60.396 55.000 0.00 0.00 42.56 2.73
5311 5581 1.027357 CTGACATGGCCCAAGCATAC 58.973 55.000 0.00 0.00 42.56 2.39
5312 5582 0.106569 CCTGACATGGCCCAAGCATA 60.107 55.000 0.00 0.00 42.56 3.14
5313 5583 1.380785 CCTGACATGGCCCAAGCAT 60.381 57.895 0.00 0.00 42.56 3.79
5314 5584 1.866483 ATCCTGACATGGCCCAAGCA 61.866 55.000 0.00 0.00 42.56 3.91
5315 5585 1.076485 ATCCTGACATGGCCCAAGC 60.076 57.895 0.00 0.00 38.76 4.01
5316 5586 1.389609 GCATCCTGACATGGCCCAAG 61.390 60.000 0.00 0.00 0.00 3.61
5317 5587 1.380246 GCATCCTGACATGGCCCAA 60.380 57.895 0.00 0.00 0.00 4.12
5318 5588 2.276409 GCATCCTGACATGGCCCA 59.724 61.111 0.00 0.00 0.00 5.36
5319 5589 2.903855 CGCATCCTGACATGGCCC 60.904 66.667 0.00 0.00 0.00 5.80
5320 5590 1.890979 CTCGCATCCTGACATGGCC 60.891 63.158 0.00 0.00 0.00 5.36
5321 5591 2.541120 GCTCGCATCCTGACATGGC 61.541 63.158 0.00 0.00 0.00 4.40
5322 5592 0.390492 TAGCTCGCATCCTGACATGG 59.610 55.000 0.00 0.00 0.00 3.66
5323 5593 1.495878 GTAGCTCGCATCCTGACATG 58.504 55.000 0.00 0.00 0.00 3.21
5324 5594 0.031314 CGTAGCTCGCATCCTGACAT 59.969 55.000 0.00 0.00 0.00 3.06
5325 5595 1.433471 CGTAGCTCGCATCCTGACA 59.567 57.895 0.00 0.00 0.00 3.58
5326 5596 1.299468 CCGTAGCTCGCATCCTGAC 60.299 63.158 0.00 0.00 38.35 3.51
5327 5597 0.464916 TACCGTAGCTCGCATCCTGA 60.465 55.000 0.00 0.00 38.35 3.86
5328 5598 0.384309 TTACCGTAGCTCGCATCCTG 59.616 55.000 0.00 0.00 38.35 3.86
5329 5599 1.108776 TTTACCGTAGCTCGCATCCT 58.891 50.000 0.00 0.00 38.35 3.24
5330 5600 1.859080 CTTTTACCGTAGCTCGCATCC 59.141 52.381 0.00 0.00 38.35 3.51
5331 5601 1.258197 GCTTTTACCGTAGCTCGCATC 59.742 52.381 0.00 0.00 38.35 3.91
5332 5602 1.134788 AGCTTTTACCGTAGCTCGCAT 60.135 47.619 0.00 0.00 44.05 4.73
5333 5603 0.245539 AGCTTTTACCGTAGCTCGCA 59.754 50.000 0.00 0.00 44.05 5.10
5334 5604 1.060698 CAAGCTTTTACCGTAGCTCGC 59.939 52.381 0.00 0.00 46.53 5.03
5335 5605 1.659098 CCAAGCTTTTACCGTAGCTCG 59.341 52.381 0.00 0.00 46.53 5.03
5336 5606 1.397343 GCCAAGCTTTTACCGTAGCTC 59.603 52.381 0.00 0.00 46.53 4.09
5338 5608 1.130561 CTGCCAAGCTTTTACCGTAGC 59.869 52.381 0.00 0.00 37.66 3.58
5339 5609 2.415512 GTCTGCCAAGCTTTTACCGTAG 59.584 50.000 0.00 0.00 0.00 3.51
5340 5610 2.038033 AGTCTGCCAAGCTTTTACCGTA 59.962 45.455 0.00 0.00 0.00 4.02
5341 5611 1.202770 AGTCTGCCAAGCTTTTACCGT 60.203 47.619 0.00 0.00 0.00 4.83
5342 5612 1.197721 CAGTCTGCCAAGCTTTTACCG 59.802 52.381 0.00 0.00 0.00 4.02
5343 5613 2.504367 TCAGTCTGCCAAGCTTTTACC 58.496 47.619 0.00 0.00 0.00 2.85
5344 5614 4.216257 TCATTCAGTCTGCCAAGCTTTTAC 59.784 41.667 0.00 0.00 0.00 2.01
5345 5615 4.216257 GTCATTCAGTCTGCCAAGCTTTTA 59.784 41.667 0.00 0.00 0.00 1.52
5346 5616 3.005155 GTCATTCAGTCTGCCAAGCTTTT 59.995 43.478 0.00 0.00 0.00 2.27
5347 5617 2.555757 GTCATTCAGTCTGCCAAGCTTT 59.444 45.455 0.00 0.00 0.00 3.51
5348 5618 2.157738 GTCATTCAGTCTGCCAAGCTT 58.842 47.619 0.00 0.00 0.00 3.74
5349 5619 1.350351 AGTCATTCAGTCTGCCAAGCT 59.650 47.619 0.00 0.00 0.00 3.74
5350 5620 1.467734 CAGTCATTCAGTCTGCCAAGC 59.532 52.381 0.00 0.00 0.00 4.01
5356 5626 2.344950 GTGGAGCAGTCATTCAGTCTG 58.655 52.381 0.00 0.00 36.61 3.51
5357 5627 1.277557 GGTGGAGCAGTCATTCAGTCT 59.722 52.381 0.00 0.00 0.00 3.24
5358 5628 1.277557 AGGTGGAGCAGTCATTCAGTC 59.722 52.381 0.00 0.00 0.00 3.51
5359 5629 1.356124 AGGTGGAGCAGTCATTCAGT 58.644 50.000 0.00 0.00 0.00 3.41
5360 5630 2.354259 GAAGGTGGAGCAGTCATTCAG 58.646 52.381 0.00 0.00 0.00 3.02
5361 5631 1.003580 GGAAGGTGGAGCAGTCATTCA 59.996 52.381 0.00 0.00 0.00 2.57
5362 5632 1.003580 TGGAAGGTGGAGCAGTCATTC 59.996 52.381 0.00 0.00 0.00 2.67
5363 5633 1.067295 TGGAAGGTGGAGCAGTCATT 58.933 50.000 0.00 0.00 0.00 2.57
5364 5634 0.326264 GTGGAAGGTGGAGCAGTCAT 59.674 55.000 0.00 0.00 0.00 3.06
5365 5635 1.053835 TGTGGAAGGTGGAGCAGTCA 61.054 55.000 0.00 0.00 0.00 3.41
5366 5636 0.326264 ATGTGGAAGGTGGAGCAGTC 59.674 55.000 0.00 0.00 0.00 3.51
5367 5637 0.037303 CATGTGGAAGGTGGAGCAGT 59.963 55.000 0.00 0.00 0.00 4.40
5368 5638 0.037303 ACATGTGGAAGGTGGAGCAG 59.963 55.000 0.00 0.00 0.00 4.24
5369 5639 0.250858 CACATGTGGAAGGTGGAGCA 60.251 55.000 18.51 0.00 0.00 4.26
5370 5640 0.036732 TCACATGTGGAAGGTGGAGC 59.963 55.000 25.16 0.00 33.45 4.70
5371 5641 1.072173 TGTCACATGTGGAAGGTGGAG 59.928 52.381 25.16 0.00 33.45 3.86
5372 5642 1.135960 TGTCACATGTGGAAGGTGGA 58.864 50.000 25.16 0.44 33.45 4.02
5373 5643 2.086869 GATGTCACATGTGGAAGGTGG 58.913 52.381 25.16 0.00 33.45 4.61
5374 5644 2.086869 GGATGTCACATGTGGAAGGTG 58.913 52.381 25.16 0.00 0.00 4.00
5375 5645 1.988107 AGGATGTCACATGTGGAAGGT 59.012 47.619 25.16 7.79 0.00 3.50
5376 5646 2.795231 AGGATGTCACATGTGGAAGG 57.205 50.000 25.16 0.00 0.00 3.46
5377 5647 4.478206 AGTAGGATGTCACATGTGGAAG 57.522 45.455 25.16 0.00 0.00 3.46
5378 5648 5.023452 ACTAGTAGGATGTCACATGTGGAA 58.977 41.667 25.16 14.18 0.00 3.53
5379 5649 4.402474 CACTAGTAGGATGTCACATGTGGA 59.598 45.833 25.16 12.94 0.00 4.02
5380 5650 4.442052 CCACTAGTAGGATGTCACATGTGG 60.442 50.000 25.16 0.37 35.53 4.17
5381 5651 4.160439 ACCACTAGTAGGATGTCACATGTG 59.840 45.833 20.18 20.18 0.00 3.21
5382 5652 4.353777 ACCACTAGTAGGATGTCACATGT 58.646 43.478 15.59 0.00 0.00 3.21
5383 5653 5.111989 CAACCACTAGTAGGATGTCACATG 58.888 45.833 15.59 0.00 0.00 3.21
5384 5654 4.162320 CCAACCACTAGTAGGATGTCACAT 59.838 45.833 15.59 0.00 0.00 3.21
5385 5655 3.513912 CCAACCACTAGTAGGATGTCACA 59.486 47.826 15.59 0.00 0.00 3.58
5386 5656 3.118738 CCCAACCACTAGTAGGATGTCAC 60.119 52.174 15.59 0.00 0.00 3.67
5387 5657 3.104512 CCCAACCACTAGTAGGATGTCA 58.895 50.000 15.59 0.00 0.00 3.58
5388 5658 2.434702 CCCCAACCACTAGTAGGATGTC 59.565 54.545 15.59 0.00 0.00 3.06
5389 5659 2.478292 CCCCAACCACTAGTAGGATGT 58.522 52.381 15.59 0.00 0.00 3.06
5390 5660 1.141053 GCCCCAACCACTAGTAGGATG 59.859 57.143 15.59 13.63 0.00 3.51
5391 5661 1.508256 GCCCCAACCACTAGTAGGAT 58.492 55.000 15.59 3.94 0.00 3.24
5392 5662 0.974010 CGCCCCAACCACTAGTAGGA 60.974 60.000 15.59 0.00 0.00 2.94
5393 5663 1.520666 CGCCCCAACCACTAGTAGG 59.479 63.158 1.45 2.26 0.00 3.18
5394 5664 1.153429 GCGCCCCAACCACTAGTAG 60.153 63.158 0.00 0.00 0.00 2.57
5395 5665 2.662070 GGCGCCCCAACCACTAGTA 61.662 63.158 18.11 0.00 0.00 1.82
5396 5666 4.029809 GGCGCCCCAACCACTAGT 62.030 66.667 18.11 0.00 0.00 2.57
5397 5667 4.028490 TGGCGCCCCAACCACTAG 62.028 66.667 26.77 0.00 38.46 2.57
5418 5688 3.599792 CTTTCAAGCGGCGCCACAG 62.600 63.158 30.40 15.97 0.00 3.66
5419 5689 3.659092 CTTTCAAGCGGCGCCACA 61.659 61.111 30.40 9.49 0.00 4.17
5420 5690 4.404654 CCTTTCAAGCGGCGCCAC 62.405 66.667 30.40 18.62 0.00 5.01
5421 5691 4.634703 TCCTTTCAAGCGGCGCCA 62.635 61.111 30.40 10.35 0.00 5.69
5422 5692 3.328288 CTTCCTTTCAAGCGGCGCC 62.328 63.158 30.40 19.07 0.00 6.53
5423 5693 2.176792 CTTCCTTTCAAGCGGCGC 59.823 61.111 26.86 26.86 0.00 6.53
5424 5694 2.176792 GCTTCCTTTCAAGCGGCG 59.823 61.111 0.51 0.51 39.55 6.46
5429 5699 2.465210 GCGCATAGCTTCCTTTCAAG 57.535 50.000 0.30 0.00 44.04 3.02
5468 5738 0.179097 GGAGCCGAAGACCTCATGTC 60.179 60.000 0.00 0.00 44.82 3.06
5469 5739 0.904865 TGGAGCCGAAGACCTCATGT 60.905 55.000 0.00 0.00 0.00 3.21
5470 5740 0.467384 ATGGAGCCGAAGACCTCATG 59.533 55.000 0.00 0.00 0.00 3.07
5471 5741 0.755686 GATGGAGCCGAAGACCTCAT 59.244 55.000 0.00 0.00 0.00 2.90
5472 5742 0.324738 AGATGGAGCCGAAGACCTCA 60.325 55.000 0.00 0.00 0.00 3.86
5473 5743 1.693627 TAGATGGAGCCGAAGACCTC 58.306 55.000 0.00 0.00 0.00 3.85
5474 5744 2.160721 TTAGATGGAGCCGAAGACCT 57.839 50.000 0.00 0.00 0.00 3.85
5475 5745 2.981859 TTTAGATGGAGCCGAAGACC 57.018 50.000 0.00 0.00 0.00 3.85
5495 5765 9.807921 TGAGGATTTTTCTTTCTGGTATAGTTT 57.192 29.630 0.00 0.00 0.00 2.66
5496 5766 9.232473 GTGAGGATTTTTCTTTCTGGTATAGTT 57.768 33.333 0.00 0.00 0.00 2.24
5497 5767 7.829706 GGTGAGGATTTTTCTTTCTGGTATAGT 59.170 37.037 0.00 0.00 0.00 2.12
5498 5768 8.049721 AGGTGAGGATTTTTCTTTCTGGTATAG 58.950 37.037 0.00 0.00 0.00 1.31
5499 5769 7.928873 AGGTGAGGATTTTTCTTTCTGGTATA 58.071 34.615 0.00 0.00 0.00 1.47
5500 5770 6.794534 AGGTGAGGATTTTTCTTTCTGGTAT 58.205 36.000 0.00 0.00 0.00 2.73
5501 5771 6.200878 AGGTGAGGATTTTTCTTTCTGGTA 57.799 37.500 0.00 0.00 0.00 3.25
5502 5772 5.066913 AGGTGAGGATTTTTCTTTCTGGT 57.933 39.130 0.00 0.00 0.00 4.00
5503 5773 5.536161 TGAAGGTGAGGATTTTTCTTTCTGG 59.464 40.000 0.00 0.00 0.00 3.86
5504 5774 6.639632 TGAAGGTGAGGATTTTTCTTTCTG 57.360 37.500 0.00 0.00 0.00 3.02
5505 5775 7.237255 AGATGAAGGTGAGGATTTTTCTTTCT 58.763 34.615 0.00 0.00 0.00 2.52
5506 5776 7.459795 AGATGAAGGTGAGGATTTTTCTTTC 57.540 36.000 0.00 0.00 0.00 2.62
5507 5777 7.846101 AAGATGAAGGTGAGGATTTTTCTTT 57.154 32.000 0.00 0.00 0.00 2.52
5508 5778 8.940397 TTAAGATGAAGGTGAGGATTTTTCTT 57.060 30.769 0.00 0.00 0.00 2.52
5509 5779 8.940397 TTTAAGATGAAGGTGAGGATTTTTCT 57.060 30.769 0.00 0.00 0.00 2.52
5510 5780 9.981114 TTTTTAAGATGAAGGTGAGGATTTTTC 57.019 29.630 0.00 0.00 0.00 2.29
5511 5781 9.987272 CTTTTTAAGATGAAGGTGAGGATTTTT 57.013 29.630 0.00 0.00 0.00 1.94
5512 5782 9.367160 TCTTTTTAAGATGAAGGTGAGGATTTT 57.633 29.630 0.00 0.00 31.20 1.82
5513 5783 8.940397 TCTTTTTAAGATGAAGGTGAGGATTT 57.060 30.769 0.00 0.00 31.20 2.17
5514 5784 8.940397 TTCTTTTTAAGATGAAGGTGAGGATT 57.060 30.769 0.00 0.00 37.38 3.01
5515 5785 8.166726 ACTTCTTTTTAAGATGAAGGTGAGGAT 58.833 33.333 19.51 1.77 39.90 3.24
5516 5786 7.518188 ACTTCTTTTTAAGATGAAGGTGAGGA 58.482 34.615 19.51 0.00 39.90 3.71
5517 5787 7.751768 ACTTCTTTTTAAGATGAAGGTGAGG 57.248 36.000 19.51 2.46 39.90 3.86
5543 5813 7.174772 GGCCATGATGGTATTTTGTTTCTTTTT 59.825 33.333 13.84 0.00 40.46 1.94
5544 5814 6.654582 GGCCATGATGGTATTTTGTTTCTTTT 59.345 34.615 13.84 0.00 40.46 2.27
5545 5815 6.013466 AGGCCATGATGGTATTTTGTTTCTTT 60.013 34.615 13.84 0.00 40.46 2.52
5546 5816 5.484998 AGGCCATGATGGTATTTTGTTTCTT 59.515 36.000 13.84 0.00 40.46 2.52
5547 5817 5.025453 AGGCCATGATGGTATTTTGTTTCT 58.975 37.500 13.84 0.00 40.46 2.52
5548 5818 5.343307 AGGCCATGATGGTATTTTGTTTC 57.657 39.130 13.84 0.00 40.46 2.78
5549 5819 5.128663 GGTAGGCCATGATGGTATTTTGTTT 59.871 40.000 13.84 0.00 40.46 2.83
5550 5820 4.649218 GGTAGGCCATGATGGTATTTTGTT 59.351 41.667 13.84 0.00 40.46 2.83
5551 5821 4.215109 GGTAGGCCATGATGGTATTTTGT 58.785 43.478 13.84 0.00 40.46 2.83
5552 5822 4.214310 TGGTAGGCCATGATGGTATTTTG 58.786 43.478 13.84 0.00 40.46 2.44
5553 5823 4.473444 CTGGTAGGCCATGATGGTATTTT 58.527 43.478 13.84 0.00 45.05 1.82
5554 5824 3.751893 GCTGGTAGGCCATGATGGTATTT 60.752 47.826 13.84 0.00 45.05 1.40
5555 5825 2.224867 GCTGGTAGGCCATGATGGTATT 60.225 50.000 13.84 1.72 45.05 1.89
5556 5826 1.352352 GCTGGTAGGCCATGATGGTAT 59.648 52.381 13.84 4.60 45.05 2.73
5557 5827 0.764890 GCTGGTAGGCCATGATGGTA 59.235 55.000 13.84 0.00 45.05 3.25
5558 5828 1.533711 GCTGGTAGGCCATGATGGT 59.466 57.895 13.84 0.00 45.05 3.55
5559 5829 1.598962 CGCTGGTAGGCCATGATGG 60.599 63.158 7.21 7.21 45.05 3.51
5560 5830 0.602106 CTCGCTGGTAGGCCATGATG 60.602 60.000 5.01 0.00 45.05 3.07
5561 5831 1.750930 CTCGCTGGTAGGCCATGAT 59.249 57.895 5.01 0.00 45.05 2.45
5562 5832 3.094062 GCTCGCTGGTAGGCCATGA 62.094 63.158 5.01 0.00 45.05 3.07
5563 5833 2.590007 GCTCGCTGGTAGGCCATG 60.590 66.667 5.01 0.00 45.05 3.66
5564 5834 4.227134 CGCTCGCTGGTAGGCCAT 62.227 66.667 5.01 0.00 45.05 4.40
5569 5839 3.649277 AAGTGGCGCTCGCTGGTAG 62.649 63.158 7.64 0.00 41.60 3.18
5570 5840 3.234630 AAAGTGGCGCTCGCTGGTA 62.235 57.895 7.64 0.00 41.60 3.25
5571 5841 4.626081 AAAGTGGCGCTCGCTGGT 62.626 61.111 7.64 0.00 41.60 4.00
5572 5842 4.093952 CAAAGTGGCGCTCGCTGG 62.094 66.667 7.64 2.46 41.60 4.85
5573 5843 4.748679 GCAAAGTGGCGCTCGCTG 62.749 66.667 7.64 5.26 41.60 5.18
5575 5845 2.749865 TATGCAAAGTGGCGCTCGC 61.750 57.895 7.64 13.72 41.06 5.03
5576 5846 1.060937 GTATGCAAAGTGGCGCTCG 59.939 57.895 7.64 0.00 36.28 5.03
5577 5847 1.060937 CGTATGCAAAGTGGCGCTC 59.939 57.895 7.64 0.45 36.28 5.03
5578 5848 3.039202 GCGTATGCAAAGTGGCGCT 62.039 57.895 7.64 0.00 41.37 5.92
5579 5849 2.576847 GCGTATGCAAAGTGGCGC 60.577 61.111 0.00 0.00 42.15 6.53
5580 5850 2.100216 GGCGTATGCAAAGTGGCG 59.900 61.111 9.59 0.00 45.35 5.69
5581 5851 1.429423 GAGGCGTATGCAAAGTGGC 59.571 57.895 9.59 0.00 45.35 5.01
5582 5852 0.676466 TGGAGGCGTATGCAAAGTGG 60.676 55.000 9.59 0.00 45.35 4.00
5583 5853 1.382522 ATGGAGGCGTATGCAAAGTG 58.617 50.000 9.59 0.00 45.35 3.16
5584 5854 2.128771 AATGGAGGCGTATGCAAAGT 57.871 45.000 9.59 0.00 45.35 2.66
5585 5855 4.630894 TTTAATGGAGGCGTATGCAAAG 57.369 40.909 9.59 0.00 45.35 2.77
5586 5856 5.392767 TTTTTAATGGAGGCGTATGCAAA 57.607 34.783 9.59 0.00 45.35 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.