Multiple sequence alignment - TraesCS4A01G448500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G448500 chr4A 100.000 4684 0 0 1 4684 714991146 714995829 0.000000e+00 8650.0
1 TraesCS4A01G448500 chr4A 92.181 1394 99 5 2152 3542 715006548 715007934 0.000000e+00 1962.0
2 TraesCS4A01G448500 chr4A 91.088 1369 114 6 2175 3542 715098260 715099621 0.000000e+00 1845.0
3 TraesCS4A01G448500 chr4A 94.797 788 26 2 3548 4320 671574555 671575342 0.000000e+00 1214.0
4 TraesCS4A01G448500 chr4A 94.163 771 31 1 3866 4622 214525281 214524511 0.000000e+00 1162.0
5 TraesCS4A01G448500 chr4A 79.957 933 174 10 2614 3540 714844476 714845401 0.000000e+00 675.0
6 TraesCS4A01G448500 chr4A 77.087 1174 259 10 2363 3533 714565352 714566518 0.000000e+00 669.0
7 TraesCS4A01G448500 chr4A 77.004 948 187 25 2395 3329 714944230 714945159 8.990000e-142 514.0
8 TraesCS4A01G448500 chr4A 80.699 601 110 6 2755 3354 715515817 715516412 3.300000e-126 462.0
9 TraesCS4A01G448500 chr4A 83.032 442 39 17 1717 2141 43267370 43266948 7.400000e-98 368.0
10 TraesCS4A01G448500 chr4A 85.588 340 41 4 1086 1425 715006220 715006551 2.680000e-92 350.0
11 TraesCS4A01G448500 chr4A 72.279 1176 268 37 2391 3542 714418705 714419846 3.520000e-81 313.0
12 TraesCS4A01G448500 chr4A 89.610 231 24 0 1195 1425 715097911 715098141 1.270000e-75 294.0
13 TraesCS4A01G448500 chr4A 97.297 74 2 0 1 74 651833036 651833109 4.920000e-25 126.0
14 TraesCS4A01G448500 chr4A 78.832 137 22 5 72 206 693890875 693890744 8.350000e-13 86.1
15 TraesCS4A01G448500 chr4A 91.071 56 4 1 2077 2132 618478739 618478793 1.810000e-09 75.0
16 TraesCS4A01G448500 chr7A 97.474 3246 78 3 298 3542 18430247 18433489 0.000000e+00 5537.0
17 TraesCS4A01G448500 chr7A 91.631 1398 104 10 2152 3542 17802617 17801226 0.000000e+00 1921.0
18 TraesCS4A01G448500 chr7A 94.233 1075 59 2 3548 4622 551763577 551762506 0.000000e+00 1639.0
19 TraesCS4A01G448500 chr7A 84.556 1159 156 9 2385 3542 17467298 17466162 0.000000e+00 1127.0
20 TraesCS4A01G448500 chr7A 88.260 707 78 5 1435 2141 297107803 297108504 0.000000e+00 841.0
21 TraesCS4A01G448500 chr7A 76.839 1183 250 23 2363 3535 17394462 17393294 0.000000e+00 645.0
22 TraesCS4A01G448500 chr7A 95.263 190 9 0 72 261 18410162 18410351 7.620000e-78 302.0
23 TraesCS4A01G448500 chr7A 85.522 297 32 6 1130 1425 17802900 17802614 2.740000e-77 300.0
24 TraesCS4A01G448500 chr7A 90.526 95 6 3 1 94 96003750 96003842 6.360000e-24 122.0
25 TraesCS4A01G448500 chr7A 95.522 67 3 0 4618 4684 103501041 103500975 1.780000e-19 108.0
26 TraesCS4A01G448500 chr7A 95.522 67 3 0 4618 4684 648634110 648634176 1.780000e-19 108.0
27 TraesCS4A01G448500 chr7A 75.301 166 36 5 93 255 20420453 20420616 1.810000e-09 75.0
28 TraesCS4A01G448500 chrUn 93.262 1395 79 11 2152 3542 89851289 89852672 0.000000e+00 2041.0
29 TraesCS4A01G448500 chrUn 94.698 1075 41 3 3548 4607 15404098 15403025 0.000000e+00 1655.0
30 TraesCS4A01G448500 chrUn 95.006 841 26 3 3548 4374 428025023 428025861 0.000000e+00 1306.0
31 TraesCS4A01G448500 chrUn 96.902 581 16 2 3548 4127 453958357 453958936 0.000000e+00 972.0
32 TraesCS4A01G448500 chrUn 89.181 342 26 6 1086 1425 89850960 89851292 2.610000e-112 416.0
33 TraesCS4A01G448500 chrUn 72.827 1185 260 42 2384 3542 278347077 278348225 9.650000e-92 348.0
34 TraesCS4A01G448500 chrUn 72.743 1185 261 42 2384 3542 278339800 278340948 4.490000e-90 342.0
35 TraesCS4A01G448500 chrUn 76.493 519 109 12 2384 2894 50586397 50585884 2.150000e-68 270.0
36 TraesCS4A01G448500 chrUn 93.388 121 8 0 1300 1420 89863196 89863316 3.720000e-41 180.0
37 TraesCS4A01G448500 chrUn 98.592 71 1 0 1 71 336954913 336954843 4.920000e-25 126.0
38 TraesCS4A01G448500 chrUn 98.592 71 1 0 1 71 340455723 340455793 4.920000e-25 126.0
39 TraesCS4A01G448500 chrUn 98.551 69 1 0 3 71 316737535 316737467 6.360000e-24 122.0
40 TraesCS4A01G448500 chrUn 97.183 71 2 0 1 71 287817168 287817098 2.290000e-23 121.0
41 TraesCS4A01G448500 chrUn 97.183 71 2 0 1 71 300458276 300458206 2.290000e-23 121.0
42 TraesCS4A01G448500 chrUn 97.183 71 2 0 1 71 338331090 338331160 2.290000e-23 121.0
43 TraesCS4A01G448500 chrUn 97.183 71 2 0 1 71 399232461 399232531 2.290000e-23 121.0
44 TraesCS4A01G448500 chrUn 97.183 71 2 0 1 71 455229645 455229575 2.290000e-23 121.0
45 TraesCS4A01G448500 chrUn 95.833 72 3 0 1 72 345948046 345948117 2.960000e-22 117.0
46 TraesCS4A01G448500 chrUn 95.833 72 3 0 1 72 345950436 345950507 2.960000e-22 117.0
47 TraesCS4A01G448500 chrUn 95.833 72 3 0 7 78 447184158 447184087 2.960000e-22 117.0
48 TraesCS4A01G448500 chrUn 95.522 67 3 0 4618 4684 307762114 307762180 1.780000e-19 108.0
49 TraesCS4A01G448500 chrUn 90.909 55 4 1 2078 2132 253305211 253305264 6.500000e-09 73.1
50 TraesCS4A01G448500 chrUn 90.909 55 4 1 2078 2132 253832531 253832478 6.500000e-09 73.1
51 TraesCS4A01G448500 chrUn 90.909 55 4 1 2078 2132 287800894 287800841 6.500000e-09 73.1
52 TraesCS4A01G448500 chrUn 90.909 55 4 1 2078 2132 319666901 319666848 6.500000e-09 73.1
53 TraesCS4A01G448500 chrUn 90.741 54 4 1 2078 2131 71604766 71604818 2.340000e-08 71.3
54 TraesCS4A01G448500 chrUn 90.741 54 4 1 2078 2131 243976292 243976344 2.340000e-08 71.3
55 TraesCS4A01G448500 chrUn 90.741 54 4 1 2078 2131 278056806 278056858 2.340000e-08 71.3
56 TraesCS4A01G448500 chrUn 89.091 55 5 1 2078 2132 194112931 194112878 3.020000e-07 67.6
57 TraesCS4A01G448500 chr7D 90.249 1405 116 16 2152 3542 18108245 18106848 0.000000e+00 1816.0
58 TraesCS4A01G448500 chr7D 87.097 341 33 6 1087 1425 18108573 18108242 4.430000e-100 375.0
59 TraesCS4A01G448500 chr7D 75.895 531 116 11 2390 2913 18220327 18219802 1.290000e-65 261.0
60 TraesCS4A01G448500 chr7D 86.975 238 20 2 1428 1664 534747612 534747385 1.670000e-64 257.0
61 TraesCS4A01G448500 chr7D 83.803 142 18 4 4059 4200 99251371 99251507 3.800000e-26 130.0
62 TraesCS4A01G448500 chr7D 98.592 71 1 0 1 71 69051976 69052046 4.920000e-25 126.0
63 TraesCS4A01G448500 chr7D 78.049 164 32 4 93 254 20300312 20300151 2.980000e-17 100.0
64 TraesCS4A01G448500 chr2B 95.413 1090 34 3 3548 4622 778240292 778241380 0.000000e+00 1722.0
65 TraesCS4A01G448500 chr2B 91.899 716 53 5 1426 2141 406298556 406299266 0.000000e+00 996.0
66 TraesCS4A01G448500 chr2B 92.135 89 5 2 1 88 91252100 91252187 1.770000e-24 124.0
67 TraesCS4A01G448500 chr2B 95.522 67 3 0 4618 4684 363592114 363592048 1.780000e-19 108.0
68 TraesCS4A01G448500 chr5B 95.321 1090 36 2 3548 4622 79548180 79549269 0.000000e+00 1716.0
69 TraesCS4A01G448500 chr5B 90.323 713 65 4 1426 2138 221814738 221815446 0.000000e+00 931.0
70 TraesCS4A01G448500 chr5B 98.649 74 1 0 1 74 6241436 6241363 1.060000e-26 132.0
71 TraesCS4A01G448500 chr7B 95.138 1090 37 3 3548 4622 693626499 693627587 0.000000e+00 1705.0
72 TraesCS4A01G448500 chr7B 96.154 78 3 0 1 78 424515792 424515715 1.370000e-25 128.0
73 TraesCS4A01G448500 chr7B 95.522 67 3 0 4618 4684 13792260 13792326 1.780000e-19 108.0
74 TraesCS4A01G448500 chr1B 94.949 1089 39 3 3548 4622 549542103 549543189 0.000000e+00 1692.0
75 TraesCS4A01G448500 chr1B 94.643 616 18 2 4021 4622 430572710 430573324 0.000000e+00 941.0
76 TraesCS4A01G448500 chr1B 82.591 741 91 22 1436 2143 659699390 659700125 1.850000e-173 619.0
77 TraesCS4A01G448500 chr1B 97.368 76 2 0 1 76 55408717 55408792 3.800000e-26 130.0
78 TraesCS4A01G448500 chr1B 97.368 76 2 0 1 76 55423346 55423421 3.800000e-26 130.0
79 TraesCS4A01G448500 chr1B 96.154 78 3 0 1 78 57815183 57815260 1.370000e-25 128.0
80 TraesCS4A01G448500 chr4B 94.500 1091 43 4 3548 4622 401572966 401574055 0.000000e+00 1666.0
81 TraesCS4A01G448500 chr4B 91.612 763 57 5 3866 4622 293191439 293190678 0.000000e+00 1048.0
82 TraesCS4A01G448500 chr4B 89.323 665 67 4 1474 2138 300526602 300527262 0.000000e+00 832.0
83 TraesCS4A01G448500 chr4B 87.326 718 69 9 1426 2141 205187992 205188689 0.000000e+00 802.0
84 TraesCS4A01G448500 chr4B 98.611 72 1 0 1 72 611686042 611686113 1.370000e-25 128.0
85 TraesCS4A01G448500 chr3A 94.312 1090 46 3 3548 4622 655711452 655712540 0.000000e+00 1655.0
86 TraesCS4A01G448500 chr3A 92.470 1089 48 13 3548 4622 698223617 698224685 0.000000e+00 1526.0
87 TraesCS4A01G448500 chr6A 94.737 817 29 1 3548 4350 22872070 22871254 0.000000e+00 1258.0
88 TraesCS4A01G448500 chr6A 95.522 67 3 0 4618 4684 55001563 55001497 1.780000e-19 108.0
89 TraesCS4A01G448500 chr1D 93.140 758 45 4 3866 4622 4568651 4567900 0.000000e+00 1105.0
90 TraesCS4A01G448500 chr1D 90.385 624 52 7 1529 2152 369167060 369167675 0.000000e+00 813.0
91 TraesCS4A01G448500 chr1D 97.590 83 2 0 1426 1508 369166993 369167075 4.890000e-30 143.0
92 TraesCS4A01G448500 chr1D 95.062 81 4 0 1 81 410662318 410662398 1.370000e-25 128.0
93 TraesCS4A01G448500 chr1D 97.222 72 2 0 1 72 12188234 12188305 6.360000e-24 122.0
94 TraesCS4A01G448500 chr1D 97.222 72 2 0 1 72 444192700 444192629 6.360000e-24 122.0
95 TraesCS4A01G448500 chr1A 90.363 716 65 4 1426 2141 273153374 273152663 0.000000e+00 937.0
96 TraesCS4A01G448500 chr1A 95.000 80 4 0 1 80 575249898 575249819 4.920000e-25 126.0
97 TraesCS4A01G448500 chr1A 95.000 80 4 0 1 80 575253203 575253124 4.920000e-25 126.0
98 TraesCS4A01G448500 chr2A 92.439 410 29 2 1426 1835 56820002 56819595 6.750000e-163 584.0
99 TraesCS4A01G448500 chr2A 90.645 310 26 3 1832 2141 56811028 56810722 4.360000e-110 409.0
100 TraesCS4A01G448500 chr2A 88.696 115 10 3 2030 2141 650655181 650655067 2.270000e-28 137.0
101 TraesCS4A01G448500 chr2A 98.630 73 1 0 3 75 5685478 5685406 3.800000e-26 130.0
102 TraesCS4A01G448500 chr2A 95.522 67 3 0 4618 4684 178553006 178552940 1.780000e-19 108.0
103 TraesCS4A01G448500 chr2D 87.815 238 21 5 1428 1664 501307934 501308164 5.970000e-69 272.0
104 TraesCS4A01G448500 chr2D 95.522 67 3 0 4618 4684 632951645 632951579 1.780000e-19 108.0
105 TraesCS4A01G448500 chr3D 98.611 72 1 0 1 72 50515796 50515725 1.370000e-25 128.0
106 TraesCS4A01G448500 chr3D 98.592 71 1 0 1 71 50535226 50535156 4.920000e-25 126.0
107 TraesCS4A01G448500 chr3D 98.592 71 1 0 1 71 188923799 188923729 4.920000e-25 126.0
108 TraesCS4A01G448500 chr5A 94.872 78 4 0 1 78 599764640 599764563 6.360000e-24 122.0
109 TraesCS4A01G448500 chr5A 95.522 67 3 0 4618 4684 312448023 312448089 1.780000e-19 108.0
110 TraesCS4A01G448500 chr5D 97.183 71 2 0 1 71 527884775 527884845 2.290000e-23 121.0
111 TraesCS4A01G448500 chr5D 91.667 84 6 1 1 84 447500234 447500316 1.070000e-21 115.0
112 TraesCS4A01G448500 chr4D 94.805 77 2 2 1 76 12454729 12454804 8.230000e-23 119.0
113 TraesCS4A01G448500 chr4D 90.909 55 4 1 2078 2132 460968109 460968162 6.500000e-09 73.1
114 TraesCS4A01G448500 chr6D 90.909 55 4 1 2078 2132 10953164 10953217 6.500000e-09 73.1
115 TraesCS4A01G448500 chr6D 90.909 55 4 1 2078 2132 28116434 28116381 6.500000e-09 73.1
116 TraesCS4A01G448500 chr6D 90.909 55 4 1 2078 2132 62906556 62906609 6.500000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G448500 chr4A 714991146 714995829 4683 False 8650.0 8650 100.0000 1 4684 1 chr4A.!!$F8 4683
1 TraesCS4A01G448500 chr4A 671574555 671575342 787 False 1214.0 1214 94.7970 3548 4320 1 chr4A.!!$F3 772
2 TraesCS4A01G448500 chr4A 214524511 214525281 770 True 1162.0 1162 94.1630 3866 4622 1 chr4A.!!$R2 756
3 TraesCS4A01G448500 chr4A 715006220 715007934 1714 False 1156.0 1962 88.8845 1086 3542 2 chr4A.!!$F10 2456
4 TraesCS4A01G448500 chr4A 715097911 715099621 1710 False 1069.5 1845 90.3490 1195 3542 2 chr4A.!!$F11 2347
5 TraesCS4A01G448500 chr4A 714844476 714845401 925 False 675.0 675 79.9570 2614 3540 1 chr4A.!!$F6 926
6 TraesCS4A01G448500 chr4A 714565352 714566518 1166 False 669.0 669 77.0870 2363 3533 1 chr4A.!!$F5 1170
7 TraesCS4A01G448500 chr4A 714944230 714945159 929 False 514.0 514 77.0040 2395 3329 1 chr4A.!!$F7 934
8 TraesCS4A01G448500 chr4A 715515817 715516412 595 False 462.0 462 80.6990 2755 3354 1 chr4A.!!$F9 599
9 TraesCS4A01G448500 chr4A 714418705 714419846 1141 False 313.0 313 72.2790 2391 3542 1 chr4A.!!$F4 1151
10 TraesCS4A01G448500 chr7A 18430247 18433489 3242 False 5537.0 5537 97.4740 298 3542 1 chr7A.!!$F2 3244
11 TraesCS4A01G448500 chr7A 551762506 551763577 1071 True 1639.0 1639 94.2330 3548 4622 1 chr7A.!!$R4 1074
12 TraesCS4A01G448500 chr7A 17466162 17467298 1136 True 1127.0 1127 84.5560 2385 3542 1 chr7A.!!$R2 1157
13 TraesCS4A01G448500 chr7A 17801226 17802900 1674 True 1110.5 1921 88.5765 1130 3542 2 chr7A.!!$R5 2412
14 TraesCS4A01G448500 chr7A 297107803 297108504 701 False 841.0 841 88.2600 1435 2141 1 chr7A.!!$F5 706
15 TraesCS4A01G448500 chr7A 17393294 17394462 1168 True 645.0 645 76.8390 2363 3535 1 chr7A.!!$R1 1172
16 TraesCS4A01G448500 chrUn 15403025 15404098 1073 True 1655.0 1655 94.6980 3548 4607 1 chrUn.!!$R1 1059
17 TraesCS4A01G448500 chrUn 428025023 428025861 838 False 1306.0 1306 95.0060 3548 4374 1 chrUn.!!$F12 826
18 TraesCS4A01G448500 chrUn 89850960 89852672 1712 False 1228.5 2041 91.2215 1086 3542 2 chrUn.!!$F14 2456
19 TraesCS4A01G448500 chrUn 453958357 453958936 579 False 972.0 972 96.9020 3548 4127 1 chrUn.!!$F13 579
20 TraesCS4A01G448500 chrUn 278347077 278348225 1148 False 348.0 348 72.8270 2384 3542 1 chrUn.!!$F7 1158
21 TraesCS4A01G448500 chrUn 278339800 278340948 1148 False 342.0 342 72.7430 2384 3542 1 chrUn.!!$F6 1158
22 TraesCS4A01G448500 chrUn 50585884 50586397 513 True 270.0 270 76.4930 2384 2894 1 chrUn.!!$R2 510
23 TraesCS4A01G448500 chr7D 18106848 18108573 1725 True 1095.5 1816 88.6730 1087 3542 2 chr7D.!!$R4 2455
24 TraesCS4A01G448500 chr7D 18219802 18220327 525 True 261.0 261 75.8950 2390 2913 1 chr7D.!!$R1 523
25 TraesCS4A01G448500 chr2B 778240292 778241380 1088 False 1722.0 1722 95.4130 3548 4622 1 chr2B.!!$F3 1074
26 TraesCS4A01G448500 chr2B 406298556 406299266 710 False 996.0 996 91.8990 1426 2141 1 chr2B.!!$F2 715
27 TraesCS4A01G448500 chr5B 79548180 79549269 1089 False 1716.0 1716 95.3210 3548 4622 1 chr5B.!!$F1 1074
28 TraesCS4A01G448500 chr5B 221814738 221815446 708 False 931.0 931 90.3230 1426 2138 1 chr5B.!!$F2 712
29 TraesCS4A01G448500 chr7B 693626499 693627587 1088 False 1705.0 1705 95.1380 3548 4622 1 chr7B.!!$F2 1074
30 TraesCS4A01G448500 chr1B 549542103 549543189 1086 False 1692.0 1692 94.9490 3548 4622 1 chr1B.!!$F5 1074
31 TraesCS4A01G448500 chr1B 430572710 430573324 614 False 941.0 941 94.6430 4021 4622 1 chr1B.!!$F4 601
32 TraesCS4A01G448500 chr1B 659699390 659700125 735 False 619.0 619 82.5910 1436 2143 1 chr1B.!!$F6 707
33 TraesCS4A01G448500 chr4B 401572966 401574055 1089 False 1666.0 1666 94.5000 3548 4622 1 chr4B.!!$F3 1074
34 TraesCS4A01G448500 chr4B 293190678 293191439 761 True 1048.0 1048 91.6120 3866 4622 1 chr4B.!!$R1 756
35 TraesCS4A01G448500 chr4B 300526602 300527262 660 False 832.0 832 89.3230 1474 2138 1 chr4B.!!$F2 664
36 TraesCS4A01G448500 chr4B 205187992 205188689 697 False 802.0 802 87.3260 1426 2141 1 chr4B.!!$F1 715
37 TraesCS4A01G448500 chr3A 655711452 655712540 1088 False 1655.0 1655 94.3120 3548 4622 1 chr3A.!!$F1 1074
38 TraesCS4A01G448500 chr3A 698223617 698224685 1068 False 1526.0 1526 92.4700 3548 4622 1 chr3A.!!$F2 1074
39 TraesCS4A01G448500 chr6A 22871254 22872070 816 True 1258.0 1258 94.7370 3548 4350 1 chr6A.!!$R1 802
40 TraesCS4A01G448500 chr1D 4567900 4568651 751 True 1105.0 1105 93.1400 3866 4622 1 chr1D.!!$R1 756
41 TraesCS4A01G448500 chr1D 369166993 369167675 682 False 478.0 813 93.9875 1426 2152 2 chr1D.!!$F3 726
42 TraesCS4A01G448500 chr1A 273152663 273153374 711 True 937.0 937 90.3630 1426 2141 1 chr1A.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.103390 TTTTGTCAGCCGTCGAGTCA 59.897 50.0 0.00 0.00 0.00 3.41 F
1793 1851 0.242017 GCACACAAGCAGGTTGATCC 59.758 55.0 19.28 1.03 38.60 3.36 F
1899 1967 0.721718 CAAAGTTCGATGGCGTCTCC 59.278 55.0 5.00 0.00 38.98 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 1901 0.248458 CGCTGCAAAAACGGTTCACT 60.248 50.0 0.0 0.0 0.00 3.41 R
3418 3649 0.749049 GCAAGGATCCCTCCAATTGC 59.251 55.0 15.8 15.8 44.79 3.56 R
3828 4061 0.660488 TTCGACACCACAACACATGC 59.340 50.0 0.0 0.0 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 9.187996 TCATTCTGTAAATTGCTCATATTTCCA 57.812 29.630 0.00 0.00 0.00 3.53
68 69 9.806203 CATTCTGTAAATTGCTCATATTTCCAA 57.194 29.630 0.00 0.00 0.00 3.53
69 70 9.807649 ATTCTGTAAATTGCTCATATTTCCAAC 57.192 29.630 0.00 0.00 0.00 3.77
70 71 8.347004 TCTGTAAATTGCTCATATTTCCAACA 57.653 30.769 0.00 0.00 0.00 3.33
71 72 8.243426 TCTGTAAATTGCTCATATTTCCAACAC 58.757 33.333 0.00 0.00 0.00 3.32
72 73 8.121305 TGTAAATTGCTCATATTTCCAACACT 57.879 30.769 0.00 0.00 0.00 3.55
73 74 9.237187 TGTAAATTGCTCATATTTCCAACACTA 57.763 29.630 0.00 0.00 0.00 2.74
75 76 8.986477 AAATTGCTCATATTTCCAACACTAAC 57.014 30.769 0.00 0.00 0.00 2.34
76 77 7.944729 ATTGCTCATATTTCCAACACTAACT 57.055 32.000 0.00 0.00 0.00 2.24
77 78 9.461312 AATTGCTCATATTTCCAACACTAACTA 57.539 29.630 0.00 0.00 0.00 2.24
78 79 8.856153 TTGCTCATATTTCCAACACTAACTAA 57.144 30.769 0.00 0.00 0.00 2.24
79 80 8.492673 TGCTCATATTTCCAACACTAACTAAG 57.507 34.615 0.00 0.00 0.00 2.18
80 81 7.065803 TGCTCATATTTCCAACACTAACTAAGC 59.934 37.037 0.00 0.00 0.00 3.09
81 82 7.281100 GCTCATATTTCCAACACTAACTAAGCT 59.719 37.037 0.00 0.00 0.00 3.74
82 83 9.817809 CTCATATTTCCAACACTAACTAAGCTA 57.182 33.333 0.00 0.00 0.00 3.32
83 84 9.595823 TCATATTTCCAACACTAACTAAGCTAC 57.404 33.333 0.00 0.00 0.00 3.58
84 85 9.601217 CATATTTCCAACACTAACTAAGCTACT 57.399 33.333 0.00 0.00 0.00 2.57
86 87 8.999220 ATTTCCAACACTAACTAAGCTACTAC 57.001 34.615 0.00 0.00 0.00 2.73
87 88 7.771927 TTCCAACACTAACTAAGCTACTACT 57.228 36.000 0.00 0.00 0.00 2.57
88 89 8.868522 TTCCAACACTAACTAAGCTACTACTA 57.131 34.615 0.00 0.00 0.00 1.82
89 90 8.503458 TCCAACACTAACTAAGCTACTACTAG 57.497 38.462 0.00 0.00 0.00 2.57
90 91 7.066766 TCCAACACTAACTAAGCTACTACTAGC 59.933 40.741 0.00 0.00 45.30 3.42
123 124 9.793259 ATTAATTCCAACTTGAGAGTAAGACAA 57.207 29.630 0.00 0.00 34.21 3.18
124 125 9.793259 TTAATTCCAACTTGAGAGTAAGACAAT 57.207 29.630 0.00 0.00 34.21 2.71
126 127 9.793259 AATTCCAACTTGAGAGTAAGACAATAA 57.207 29.630 0.00 0.00 34.21 1.40
127 128 9.965902 ATTCCAACTTGAGAGTAAGACAATAAT 57.034 29.630 0.00 0.00 34.21 1.28
159 160 4.785669 GGCAACAAACAGATAGATCGAG 57.214 45.455 0.00 0.00 0.00 4.04
160 161 3.557595 GGCAACAAACAGATAGATCGAGG 59.442 47.826 0.00 0.00 0.00 4.63
161 162 4.184629 GCAACAAACAGATAGATCGAGGT 58.815 43.478 0.00 0.00 0.00 3.85
162 163 4.268884 GCAACAAACAGATAGATCGAGGTC 59.731 45.833 0.00 0.00 0.00 3.85
163 164 5.655488 CAACAAACAGATAGATCGAGGTCT 58.345 41.667 0.00 0.00 0.00 3.85
164 165 5.923733 ACAAACAGATAGATCGAGGTCTT 57.076 39.130 0.00 0.00 0.00 3.01
165 166 7.258441 CAACAAACAGATAGATCGAGGTCTTA 58.742 38.462 0.00 0.00 0.00 2.10
166 167 7.406031 ACAAACAGATAGATCGAGGTCTTAA 57.594 36.000 0.00 0.00 0.00 1.85
167 168 7.259161 ACAAACAGATAGATCGAGGTCTTAAC 58.741 38.462 0.00 0.00 0.00 2.01
168 169 6.394025 AACAGATAGATCGAGGTCTTAACC 57.606 41.667 0.00 0.00 46.87 2.85
191 192 7.593825 ACCACTCTTTATATTGTTTTGTCAGC 58.406 34.615 0.00 0.00 0.00 4.26
192 193 7.029563 CCACTCTTTATATTGTTTTGTCAGCC 58.970 38.462 0.00 0.00 0.00 4.85
193 194 6.742718 CACTCTTTATATTGTTTTGTCAGCCG 59.257 38.462 0.00 0.00 0.00 5.52
194 195 6.430000 ACTCTTTATATTGTTTTGTCAGCCGT 59.570 34.615 0.00 0.00 0.00 5.68
195 196 6.837992 TCTTTATATTGTTTTGTCAGCCGTC 58.162 36.000 0.00 0.00 0.00 4.79
196 197 3.740044 ATATTGTTTTGTCAGCCGTCG 57.260 42.857 0.00 0.00 0.00 5.12
197 198 1.588674 ATTGTTTTGTCAGCCGTCGA 58.411 45.000 0.00 0.00 0.00 4.20
198 199 0.934496 TTGTTTTGTCAGCCGTCGAG 59.066 50.000 0.00 0.00 0.00 4.04
199 200 0.179094 TGTTTTGTCAGCCGTCGAGT 60.179 50.000 0.00 0.00 0.00 4.18
200 201 0.507358 GTTTTGTCAGCCGTCGAGTC 59.493 55.000 0.00 0.00 0.00 3.36
201 202 0.103390 TTTTGTCAGCCGTCGAGTCA 59.897 50.000 0.00 0.00 0.00 3.41
202 203 0.318699 TTTGTCAGCCGTCGAGTCAG 60.319 55.000 0.00 0.00 0.00 3.51
203 204 1.170290 TTGTCAGCCGTCGAGTCAGA 61.170 55.000 0.00 0.00 0.00 3.27
204 205 0.960861 TGTCAGCCGTCGAGTCAGAT 60.961 55.000 0.00 0.00 0.00 2.90
205 206 1.015109 GTCAGCCGTCGAGTCAGATA 58.985 55.000 0.00 0.00 0.00 1.98
206 207 1.400846 GTCAGCCGTCGAGTCAGATAA 59.599 52.381 0.00 0.00 0.00 1.75
207 208 1.671328 TCAGCCGTCGAGTCAGATAAG 59.329 52.381 0.00 0.00 0.00 1.73
208 209 1.671328 CAGCCGTCGAGTCAGATAAGA 59.329 52.381 0.00 0.00 0.00 2.10
209 210 2.292016 CAGCCGTCGAGTCAGATAAGAT 59.708 50.000 0.00 0.00 0.00 2.40
210 211 2.550606 AGCCGTCGAGTCAGATAAGATC 59.449 50.000 0.00 0.00 0.00 2.75
211 212 2.290916 GCCGTCGAGTCAGATAAGATCA 59.709 50.000 0.00 0.00 0.00 2.92
212 213 3.243101 GCCGTCGAGTCAGATAAGATCAA 60.243 47.826 0.00 0.00 0.00 2.57
213 214 4.532276 CCGTCGAGTCAGATAAGATCAAG 58.468 47.826 0.00 0.00 0.00 3.02
214 215 4.035792 CCGTCGAGTCAGATAAGATCAAGT 59.964 45.833 0.00 0.00 0.00 3.16
215 216 4.966970 CGTCGAGTCAGATAAGATCAAGTG 59.033 45.833 0.00 0.00 0.00 3.16
216 217 5.277825 GTCGAGTCAGATAAGATCAAGTGG 58.722 45.833 0.00 0.00 0.00 4.00
217 218 4.047822 CGAGTCAGATAAGATCAAGTGGC 58.952 47.826 0.00 0.00 0.00 5.01
218 219 4.047822 GAGTCAGATAAGATCAAGTGGCG 58.952 47.826 0.00 0.00 0.00 5.69
219 220 3.701542 AGTCAGATAAGATCAAGTGGCGA 59.298 43.478 0.00 0.00 0.00 5.54
220 221 4.160439 AGTCAGATAAGATCAAGTGGCGAA 59.840 41.667 0.00 0.00 0.00 4.70
221 222 4.268884 GTCAGATAAGATCAAGTGGCGAAC 59.731 45.833 0.00 0.00 0.00 3.95
222 223 4.081697 TCAGATAAGATCAAGTGGCGAACA 60.082 41.667 0.00 0.00 0.00 3.18
223 224 4.269603 CAGATAAGATCAAGTGGCGAACAG 59.730 45.833 0.00 0.00 0.00 3.16
224 225 2.839486 AAGATCAAGTGGCGAACAGA 57.161 45.000 0.00 0.00 0.00 3.41
225 226 3.340814 AAGATCAAGTGGCGAACAGAT 57.659 42.857 0.00 0.00 0.00 2.90
226 227 2.625737 AGATCAAGTGGCGAACAGATG 58.374 47.619 0.00 0.00 0.00 2.90
227 228 1.667724 GATCAAGTGGCGAACAGATGG 59.332 52.381 0.00 0.00 0.00 3.51
228 229 0.955428 TCAAGTGGCGAACAGATGGC 60.955 55.000 0.00 0.00 0.00 4.40
234 235 3.686622 GCGAACAGATGGCCTATCA 57.313 52.632 3.32 0.00 38.31 2.15
235 236 2.175878 GCGAACAGATGGCCTATCAT 57.824 50.000 3.32 0.00 38.31 2.45
236 237 3.319137 GCGAACAGATGGCCTATCATA 57.681 47.619 3.32 0.00 38.31 2.15
237 238 2.996621 GCGAACAGATGGCCTATCATAC 59.003 50.000 3.32 0.00 38.31 2.39
238 239 3.554960 GCGAACAGATGGCCTATCATACA 60.555 47.826 3.32 0.00 38.31 2.29
239 240 3.990469 CGAACAGATGGCCTATCATACAC 59.010 47.826 3.32 0.00 38.31 2.90
240 241 4.319177 GAACAGATGGCCTATCATACACC 58.681 47.826 3.32 0.00 38.31 4.16
241 242 3.317406 ACAGATGGCCTATCATACACCA 58.683 45.455 3.32 0.00 38.31 4.17
242 243 3.912528 ACAGATGGCCTATCATACACCAT 59.087 43.478 3.32 0.00 43.72 3.55
245 246 1.623311 TGGCCTATCATACACCATCCG 59.377 52.381 3.32 0.00 0.00 4.18
246 247 1.066143 GGCCTATCATACACCATCCGG 60.066 57.143 0.00 0.00 38.77 5.14
247 248 1.676014 GCCTATCATACACCATCCGGC 60.676 57.143 0.00 0.00 34.57 6.13
248 249 1.066143 CCTATCATACACCATCCGGCC 60.066 57.143 0.00 0.00 34.57 6.13
249 250 1.902508 CTATCATACACCATCCGGCCT 59.097 52.381 0.00 0.00 34.57 5.19
250 251 1.140312 ATCATACACCATCCGGCCTT 58.860 50.000 0.00 0.00 34.57 4.35
251 252 1.796017 TCATACACCATCCGGCCTTA 58.204 50.000 0.00 0.00 34.57 2.69
252 253 1.414919 TCATACACCATCCGGCCTTAC 59.585 52.381 0.00 0.00 34.57 2.34
253 254 0.763035 ATACACCATCCGGCCTTACC 59.237 55.000 0.00 0.00 34.57 2.85
254 255 1.339644 TACACCATCCGGCCTTACCC 61.340 60.000 0.00 0.00 34.57 3.69
255 256 2.285818 ACCATCCGGCCTTACCCA 60.286 61.111 0.00 0.00 34.57 4.51
256 257 2.192175 CCATCCGGCCTTACCCAC 59.808 66.667 0.00 0.00 33.26 4.61
257 258 2.192175 CATCCGGCCTTACCCACC 59.808 66.667 0.00 0.00 33.26 4.61
258 259 2.285818 ATCCGGCCTTACCCACCA 60.286 61.111 0.00 0.00 33.26 4.17
259 260 2.676265 ATCCGGCCTTACCCACCAC 61.676 63.158 0.00 0.00 33.26 4.16
260 261 3.327404 CCGGCCTTACCCACCACT 61.327 66.667 0.00 0.00 33.26 4.00
261 262 2.046314 CGGCCTTACCCACCACTG 60.046 66.667 0.00 0.00 33.26 3.66
262 263 2.890766 CGGCCTTACCCACCACTGT 61.891 63.158 0.00 0.00 33.26 3.55
263 264 1.546589 CGGCCTTACCCACCACTGTA 61.547 60.000 0.00 0.00 33.26 2.74
264 265 0.916809 GGCCTTACCCACCACTGTAT 59.083 55.000 0.00 0.00 0.00 2.29
265 266 2.121129 GGCCTTACCCACCACTGTATA 58.879 52.381 0.00 0.00 0.00 1.47
266 267 2.709397 GGCCTTACCCACCACTGTATAT 59.291 50.000 0.00 0.00 0.00 0.86
267 268 3.244457 GGCCTTACCCACCACTGTATATC 60.244 52.174 0.00 0.00 0.00 1.63
268 269 3.646637 GCCTTACCCACCACTGTATATCT 59.353 47.826 0.00 0.00 0.00 1.98
269 270 4.102681 GCCTTACCCACCACTGTATATCTT 59.897 45.833 0.00 0.00 0.00 2.40
270 271 5.306160 GCCTTACCCACCACTGTATATCTTA 59.694 44.000 0.00 0.00 0.00 2.10
271 272 6.183361 GCCTTACCCACCACTGTATATCTTAA 60.183 42.308 0.00 0.00 0.00 1.85
272 273 7.474364 GCCTTACCCACCACTGTATATCTTAAT 60.474 40.741 0.00 0.00 0.00 1.40
273 274 8.095169 CCTTACCCACCACTGTATATCTTAATC 58.905 40.741 0.00 0.00 0.00 1.75
274 275 8.555896 TTACCCACCACTGTATATCTTAATCA 57.444 34.615 0.00 0.00 0.00 2.57
275 276 7.633018 ACCCACCACTGTATATCTTAATCAT 57.367 36.000 0.00 0.00 0.00 2.45
276 277 8.736097 ACCCACCACTGTATATCTTAATCATA 57.264 34.615 0.00 0.00 0.00 2.15
277 278 9.338968 ACCCACCACTGTATATCTTAATCATAT 57.661 33.333 0.00 0.00 0.00 1.78
296 297 9.866655 AATCATATACCTTCACCATACATTTGT 57.133 29.630 0.00 0.00 0.00 2.83
316 317 1.648720 CGGCCGGCTGTATTGATTG 59.351 57.895 27.83 0.07 0.00 2.67
321 322 2.213499 CCGGCTGTATTGATTGAGTCC 58.787 52.381 0.00 0.00 0.00 3.85
370 371 8.818057 GTGATAATCACGATGTTAGCTAAGTTT 58.182 33.333 6.38 0.00 37.67 2.66
376 377 4.860907 ACGATGTTAGCTAAGTTTACGGTG 59.139 41.667 6.38 0.00 0.00 4.94
479 480 6.668541 TCTAGTAATTGCTTGTTGAGATGC 57.331 37.500 0.00 0.00 0.00 3.91
586 587 1.335142 GGAGCAGATCGACCGTGTATC 60.335 57.143 0.00 0.00 0.00 2.24
593 594 1.355005 TCGACCGTGTATCGTTACGA 58.645 50.000 10.62 10.62 42.54 3.43
611 612 1.340017 CGAAGAACATGGTGGATGGGT 60.340 52.381 0.00 0.00 36.23 4.51
703 705 3.823281 TCTCTCTCCTACCTACACTCG 57.177 52.381 0.00 0.00 0.00 4.18
837 839 6.795144 TCCATAATTGAGCCACAAAATGAT 57.205 33.333 15.10 1.20 42.03 2.45
976 978 0.249398 GAGTGCACCTCGGGTACATT 59.751 55.000 14.63 0.00 31.09 2.71
977 979 0.249398 AGTGCACCTCGGGTACATTC 59.751 55.000 14.63 0.00 31.09 2.67
978 980 0.743345 GTGCACCTCGGGTACATTCC 60.743 60.000 5.22 0.00 31.09 3.01
979 981 1.153229 GCACCTCGGGTACATTCCC 60.153 63.158 0.00 0.00 43.78 3.97
980 982 1.525442 CACCTCGGGTACATTCCCC 59.475 63.158 0.00 0.00 44.32 4.81
1056 1058 2.551459 GCCTAAAGCATGCGATCAGATT 59.449 45.455 13.01 0.00 42.97 2.40
1081 1083 3.933332 GCTTACTTGCCTATTCTCGTGTT 59.067 43.478 0.00 0.00 0.00 3.32
1216 1220 0.608130 TTGTCCTCGACATCCACCAG 59.392 55.000 0.00 0.00 42.40 4.00
1420 1424 3.201290 GTGTGCAGAAGGATATCTGGTG 58.799 50.000 2.05 0.00 45.60 4.17
1731 1789 2.293184 ACTAGAAGCTTGGATCCTCCCA 60.293 50.000 14.23 0.00 35.03 4.37
1793 1851 0.242017 GCACACAAGCAGGTTGATCC 59.758 55.000 19.28 1.03 38.60 3.36
1843 1901 7.200778 TGCCGTGTATAGAATACGTATGTAA 57.799 36.000 9.24 0.00 40.74 2.41
1853 1911 6.624423 AGAATACGTATGTAAGTGAACCGTT 58.376 36.000 9.24 0.00 33.44 4.44
1899 1967 0.721718 CAAAGTTCGATGGCGTCTCC 59.278 55.000 5.00 0.00 38.98 3.71
1910 1978 2.677979 GCGTCTCCGAAGTTTGGCC 61.678 63.158 3.99 0.00 35.63 5.36
2076 2151 5.762179 TCCATCTCAAACCAATAGACACT 57.238 39.130 0.00 0.00 0.00 3.55
2325 2510 4.093850 GTGGCAATTTTTCTCATCCATTGC 59.906 41.667 6.62 6.62 45.94 3.56
2437 2637 1.033746 ACGATGCAGGCATTCTTGGG 61.034 55.000 8.34 0.00 36.70 4.12
2628 2828 4.599047 ATCCAAATTCGCAACCTGAAAA 57.401 36.364 0.00 0.00 0.00 2.29
3250 3453 5.429681 TGGCTTAGCAAAGGAATGTACTA 57.570 39.130 6.53 0.00 32.98 1.82
3418 3649 3.417101 TGTTTACCACTGGCCATACTTG 58.583 45.455 5.51 0.83 0.00 3.16
3542 3774 8.641498 ATGAAGATGATGGTTACTTTGAGTTT 57.359 30.769 0.00 0.00 0.00 2.66
3543 3775 8.463930 TGAAGATGATGGTTACTTTGAGTTTT 57.536 30.769 0.00 0.00 0.00 2.43
3544 3776 8.912988 TGAAGATGATGGTTACTTTGAGTTTTT 58.087 29.630 0.00 0.00 0.00 1.94
3545 3777 9.399403 GAAGATGATGGTTACTTTGAGTTTTTC 57.601 33.333 0.00 0.00 0.00 2.29
3546 3778 8.463930 AGATGATGGTTACTTTGAGTTTTTCA 57.536 30.769 0.00 0.00 0.00 2.69
3828 4061 3.064820 GTGGTTGCTCGTGTATATTTGGG 59.935 47.826 0.00 0.00 0.00 4.12
3914 4147 2.791383 TGTTTTGCCGGAATGTTGAG 57.209 45.000 5.05 0.00 0.00 3.02
3928 4161 5.241506 GGAATGTTGAGTCATTTCTGTTCCA 59.758 40.000 0.00 0.00 38.03 3.53
3934 4167 4.276678 TGAGTCATTTCTGTTCCAGCAAAG 59.723 41.667 0.00 0.00 0.00 2.77
3969 4202 5.977129 CGATTTGTCCACTTTTTAGCAAAGT 59.023 36.000 0.00 0.00 40.80 2.66
4280 4528 1.007734 GACTGAGACCGACACGCAA 60.008 57.895 0.00 0.00 0.00 4.85
4303 4551 1.244697 GGTGCTGAGACTGAGACCGA 61.245 60.000 0.00 0.00 0.00 4.69
4557 4805 5.118990 CCACCATCAACGATGAGAAACTAT 58.881 41.667 5.54 0.00 42.09 2.12
4622 4870 2.438021 CCAGATATTCTTGTTCCCGGGA 59.562 50.000 22.63 22.63 0.00 5.14
4623 4871 3.073062 CCAGATATTCTTGTTCCCGGGAT 59.927 47.826 27.48 10.30 0.00 3.85
4624 4872 4.446311 CCAGATATTCTTGTTCCCGGGATT 60.446 45.833 27.48 6.03 0.00 3.01
4625 4873 4.516698 CAGATATTCTTGTTCCCGGGATTG 59.483 45.833 27.48 14.69 0.00 2.67
4626 4874 2.899303 ATTCTTGTTCCCGGGATTGT 57.101 45.000 27.48 3.49 0.00 2.71
4627 4875 5.368523 AGATATTCTTGTTCCCGGGATTGTA 59.631 40.000 27.48 6.17 0.00 2.41
4628 4876 3.791953 TTCTTGTTCCCGGGATTGTAA 57.208 42.857 27.48 15.62 0.00 2.41
4629 4877 3.791953 TCTTGTTCCCGGGATTGTAAA 57.208 42.857 27.48 13.25 0.00 2.01
4630 4878 3.681593 TCTTGTTCCCGGGATTGTAAAG 58.318 45.455 27.48 21.43 0.00 1.85
4631 4879 2.500392 TGTTCCCGGGATTGTAAAGG 57.500 50.000 27.48 0.00 0.00 3.11
4632 4880 1.986631 TGTTCCCGGGATTGTAAAGGA 59.013 47.619 27.48 1.92 0.00 3.36
4633 4881 2.578940 TGTTCCCGGGATTGTAAAGGAT 59.421 45.455 27.48 0.00 0.00 3.24
4634 4882 3.781407 TGTTCCCGGGATTGTAAAGGATA 59.219 43.478 27.48 0.33 0.00 2.59
4635 4883 4.227754 TGTTCCCGGGATTGTAAAGGATAA 59.772 41.667 27.48 0.07 0.00 1.75
4636 4884 5.103855 TGTTCCCGGGATTGTAAAGGATAAT 60.104 40.000 27.48 0.00 0.00 1.28
4637 4885 5.237236 TCCCGGGATTGTAAAGGATAATC 57.763 43.478 22.63 0.00 35.48 1.75
4644 4892 7.745620 GGATTGTAAAGGATAATCCGACAAT 57.254 36.000 10.37 10.37 43.52 2.71
4647 4895 7.548196 TTGTAAAGGATAATCCGACAATCAC 57.452 36.000 0.00 0.00 42.75 3.06
4648 4896 5.751509 TGTAAAGGATAATCCGACAATCACG 59.248 40.000 0.00 0.00 42.75 4.35
4649 4897 4.402056 AAGGATAATCCGACAATCACGT 57.598 40.909 0.00 0.00 42.75 4.49
4650 4898 5.524971 AAGGATAATCCGACAATCACGTA 57.475 39.130 0.00 0.00 42.75 3.57
4651 4899 5.524971 AGGATAATCCGACAATCACGTAA 57.475 39.130 0.00 0.00 42.75 3.18
4652 4900 6.097915 AGGATAATCCGACAATCACGTAAT 57.902 37.500 0.00 0.00 42.75 1.89
4653 4901 7.223260 AGGATAATCCGACAATCACGTAATA 57.777 36.000 0.00 0.00 42.75 0.98
4654 4902 7.313646 AGGATAATCCGACAATCACGTAATAG 58.686 38.462 0.00 0.00 42.75 1.73
4655 4903 7.039923 AGGATAATCCGACAATCACGTAATAGT 60.040 37.037 0.00 0.00 42.75 2.12
4656 4904 8.239314 GGATAATCCGACAATCACGTAATAGTA 58.761 37.037 0.00 0.00 0.00 1.82
4657 4905 9.275231 GATAATCCGACAATCACGTAATAGTAG 57.725 37.037 0.00 0.00 0.00 2.57
4658 4906 6.630444 ATCCGACAATCACGTAATAGTAGT 57.370 37.500 0.00 0.00 0.00 2.73
4659 4907 6.441093 TCCGACAATCACGTAATAGTAGTT 57.559 37.500 0.00 0.00 0.00 2.24
4660 4908 6.855836 TCCGACAATCACGTAATAGTAGTTT 58.144 36.000 0.00 0.00 0.00 2.66
4661 4909 6.968904 TCCGACAATCACGTAATAGTAGTTTC 59.031 38.462 0.00 0.00 0.00 2.78
4662 4910 6.748658 CCGACAATCACGTAATAGTAGTTTCA 59.251 38.462 0.00 0.00 0.00 2.69
4663 4911 7.274033 CCGACAATCACGTAATAGTAGTTTCAA 59.726 37.037 0.00 0.00 0.00 2.69
4664 4912 8.641155 CGACAATCACGTAATAGTAGTTTCAAA 58.359 33.333 0.00 0.00 0.00 2.69
4677 4925 7.631717 AGTAGTTTCAAATATTCAAGGAGGC 57.368 36.000 0.00 0.00 0.00 4.70
4678 4926 7.406104 AGTAGTTTCAAATATTCAAGGAGGCT 58.594 34.615 0.00 0.00 0.00 4.58
4679 4927 7.890655 AGTAGTTTCAAATATTCAAGGAGGCTT 59.109 33.333 0.00 0.00 0.00 4.35
4680 4928 6.928520 AGTTTCAAATATTCAAGGAGGCTTG 58.071 36.000 0.00 0.00 35.78 4.01
4681 4929 4.989279 TCAAATATTCAAGGAGGCTTGC 57.011 40.909 0.00 0.00 34.56 4.01
4682 4930 3.378112 TCAAATATTCAAGGAGGCTTGCG 59.622 43.478 0.00 0.00 34.56 4.85
4683 4931 3.281727 AATATTCAAGGAGGCTTGCGA 57.718 42.857 0.00 0.00 34.56 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 9.187996 TGGAAATATGAGCAATTTACAGAATGA 57.812 29.630 0.00 0.00 39.69 2.57
42 43 9.806203 TTGGAAATATGAGCAATTTACAGAATG 57.194 29.630 0.00 0.00 38.17 2.67
43 44 9.807649 GTTGGAAATATGAGCAATTTACAGAAT 57.192 29.630 0.00 0.00 38.17 2.40
44 45 8.801299 TGTTGGAAATATGAGCAATTTACAGAA 58.199 29.630 0.00 0.00 38.17 3.02
45 46 8.243426 GTGTTGGAAATATGAGCAATTTACAGA 58.757 33.333 0.00 0.00 38.17 3.41
46 47 8.246180 AGTGTTGGAAATATGAGCAATTTACAG 58.754 33.333 0.00 0.00 38.17 2.74
47 48 8.121305 AGTGTTGGAAATATGAGCAATTTACA 57.879 30.769 0.00 0.00 35.77 2.41
50 51 8.806146 AGTTAGTGTTGGAAATATGAGCAATTT 58.194 29.630 0.00 0.00 0.00 1.82
51 52 8.353423 AGTTAGTGTTGGAAATATGAGCAATT 57.647 30.769 0.00 0.00 0.00 2.32
52 53 7.944729 AGTTAGTGTTGGAAATATGAGCAAT 57.055 32.000 0.00 0.00 0.00 3.56
53 54 8.856153 TTAGTTAGTGTTGGAAATATGAGCAA 57.144 30.769 0.00 0.00 0.00 3.91
54 55 7.065803 GCTTAGTTAGTGTTGGAAATATGAGCA 59.934 37.037 0.00 0.00 0.00 4.26
55 56 7.281100 AGCTTAGTTAGTGTTGGAAATATGAGC 59.719 37.037 0.00 0.00 0.00 4.26
56 57 8.723942 AGCTTAGTTAGTGTTGGAAATATGAG 57.276 34.615 0.00 0.00 0.00 2.90
57 58 9.595823 GTAGCTTAGTTAGTGTTGGAAATATGA 57.404 33.333 0.00 0.00 0.00 2.15
58 59 9.601217 AGTAGCTTAGTTAGTGTTGGAAATATG 57.399 33.333 0.00 0.00 0.00 1.78
61 62 8.813951 AGTAGTAGCTTAGTTAGTGTTGGAAAT 58.186 33.333 0.00 0.00 0.00 2.17
62 63 8.186709 AGTAGTAGCTTAGTTAGTGTTGGAAA 57.813 34.615 0.00 0.00 0.00 3.13
63 64 7.771927 AGTAGTAGCTTAGTTAGTGTTGGAA 57.228 36.000 0.00 0.00 0.00 3.53
64 65 8.503458 CTAGTAGTAGCTTAGTTAGTGTTGGA 57.497 38.462 0.00 0.00 0.00 3.53
97 98 9.793259 TTGTCTTACTCTCAAGTTGGAATTAAT 57.207 29.630 2.34 0.00 36.92 1.40
98 99 9.793259 ATTGTCTTACTCTCAAGTTGGAATTAA 57.207 29.630 2.34 0.62 36.92 1.40
100 101 9.793259 TTATTGTCTTACTCTCAAGTTGGAATT 57.207 29.630 2.34 0.00 36.92 2.17
101 102 9.965902 ATTATTGTCTTACTCTCAAGTTGGAAT 57.034 29.630 2.34 0.00 36.92 3.01
118 119 9.995003 TGTTGCCAAGAAATTTTATTATTGTCT 57.005 25.926 0.00 0.00 31.30 3.41
124 125 9.823647 TCTGTTTGTTGCCAAGAAATTTTATTA 57.176 25.926 2.88 0.00 0.00 0.98
125 126 8.729805 TCTGTTTGTTGCCAAGAAATTTTATT 57.270 26.923 2.88 0.00 0.00 1.40
126 127 8.907222 ATCTGTTTGTTGCCAAGAAATTTTAT 57.093 26.923 2.88 0.00 0.00 1.40
127 128 9.474920 CTATCTGTTTGTTGCCAAGAAATTTTA 57.525 29.630 2.88 0.00 0.00 1.52
128 129 8.203485 TCTATCTGTTTGTTGCCAAGAAATTTT 58.797 29.630 2.88 0.00 0.00 1.82
129 130 7.725251 TCTATCTGTTTGTTGCCAAGAAATTT 58.275 30.769 2.88 0.00 0.00 1.82
130 131 7.288810 TCTATCTGTTTGTTGCCAAGAAATT 57.711 32.000 2.88 0.00 0.00 1.82
131 132 6.899393 TCTATCTGTTTGTTGCCAAGAAAT 57.101 33.333 2.88 0.00 0.00 2.17
132 133 6.348458 CGATCTATCTGTTTGTTGCCAAGAAA 60.348 38.462 0.00 0.00 0.00 2.52
133 134 5.122239 CGATCTATCTGTTTGTTGCCAAGAA 59.878 40.000 0.00 0.00 0.00 2.52
134 135 4.631377 CGATCTATCTGTTTGTTGCCAAGA 59.369 41.667 0.00 0.00 0.00 3.02
135 136 4.631377 TCGATCTATCTGTTTGTTGCCAAG 59.369 41.667 0.00 0.00 0.00 3.61
136 137 4.574892 TCGATCTATCTGTTTGTTGCCAA 58.425 39.130 0.00 0.00 0.00 4.52
137 138 4.183865 CTCGATCTATCTGTTTGTTGCCA 58.816 43.478 0.00 0.00 0.00 4.92
138 139 3.557595 CCTCGATCTATCTGTTTGTTGCC 59.442 47.826 0.00 0.00 0.00 4.52
139 140 4.184629 ACCTCGATCTATCTGTTTGTTGC 58.815 43.478 0.00 0.00 0.00 4.17
140 141 5.655488 AGACCTCGATCTATCTGTTTGTTG 58.345 41.667 0.00 0.00 0.00 3.33
141 142 5.923733 AGACCTCGATCTATCTGTTTGTT 57.076 39.130 0.00 0.00 0.00 2.83
142 143 5.923733 AAGACCTCGATCTATCTGTTTGT 57.076 39.130 0.00 0.00 0.00 2.83
143 144 6.697892 GGTTAAGACCTCGATCTATCTGTTTG 59.302 42.308 0.00 0.00 42.99 2.93
144 145 6.380274 TGGTTAAGACCTCGATCTATCTGTTT 59.620 38.462 0.00 0.00 46.66 2.83
145 146 5.892119 TGGTTAAGACCTCGATCTATCTGTT 59.108 40.000 0.00 0.00 46.66 3.16
146 147 5.299782 GTGGTTAAGACCTCGATCTATCTGT 59.700 44.000 0.00 0.00 46.66 3.41
147 148 5.533154 AGTGGTTAAGACCTCGATCTATCTG 59.467 44.000 0.00 0.00 46.66 2.90
148 149 5.697067 AGTGGTTAAGACCTCGATCTATCT 58.303 41.667 0.00 0.00 46.66 1.98
149 150 5.766174 AGAGTGGTTAAGACCTCGATCTATC 59.234 44.000 0.00 0.00 46.66 2.08
150 151 5.697067 AGAGTGGTTAAGACCTCGATCTAT 58.303 41.667 0.00 0.00 46.66 1.98
151 152 5.113446 AGAGTGGTTAAGACCTCGATCTA 57.887 43.478 0.00 0.00 46.66 1.98
152 153 3.970842 AGAGTGGTTAAGACCTCGATCT 58.029 45.455 0.00 0.00 46.66 2.75
153 154 4.722361 AAGAGTGGTTAAGACCTCGATC 57.278 45.455 0.00 0.00 46.66 3.69
154 155 6.793505 ATAAAGAGTGGTTAAGACCTCGAT 57.206 37.500 0.00 0.00 46.66 3.59
155 156 7.893124 ATATAAAGAGTGGTTAAGACCTCGA 57.107 36.000 0.00 0.00 46.66 4.04
156 157 7.980099 ACAATATAAAGAGTGGTTAAGACCTCG 59.020 37.037 0.00 0.00 46.66 4.63
157 158 9.668497 AACAATATAAAGAGTGGTTAAGACCTC 57.332 33.333 0.00 0.00 46.66 3.85
165 166 8.082242 GCTGACAAAACAATATAAAGAGTGGTT 58.918 33.333 0.00 0.00 0.00 3.67
166 167 7.309194 GGCTGACAAAACAATATAAAGAGTGGT 60.309 37.037 0.00 0.00 0.00 4.16
167 168 7.029563 GGCTGACAAAACAATATAAAGAGTGG 58.970 38.462 0.00 0.00 0.00 4.00
168 169 6.742718 CGGCTGACAAAACAATATAAAGAGTG 59.257 38.462 0.00 0.00 0.00 3.51
169 170 6.430000 ACGGCTGACAAAACAATATAAAGAGT 59.570 34.615 0.00 0.00 0.00 3.24
170 171 6.842163 ACGGCTGACAAAACAATATAAAGAG 58.158 36.000 0.00 0.00 0.00 2.85
171 172 6.401688 CGACGGCTGACAAAACAATATAAAGA 60.402 38.462 0.00 0.00 0.00 2.52
172 173 5.732647 CGACGGCTGACAAAACAATATAAAG 59.267 40.000 0.00 0.00 0.00 1.85
173 174 5.408909 TCGACGGCTGACAAAACAATATAAA 59.591 36.000 0.00 0.00 0.00 1.40
174 175 4.930405 TCGACGGCTGACAAAACAATATAA 59.070 37.500 0.00 0.00 0.00 0.98
175 176 4.496360 TCGACGGCTGACAAAACAATATA 58.504 39.130 0.00 0.00 0.00 0.86
176 177 3.331150 TCGACGGCTGACAAAACAATAT 58.669 40.909 0.00 0.00 0.00 1.28
177 178 2.734606 CTCGACGGCTGACAAAACAATA 59.265 45.455 0.00 0.00 0.00 1.90
178 179 1.531149 CTCGACGGCTGACAAAACAAT 59.469 47.619 0.00 0.00 0.00 2.71
179 180 0.934496 CTCGACGGCTGACAAAACAA 59.066 50.000 0.00 0.00 0.00 2.83
180 181 0.179094 ACTCGACGGCTGACAAAACA 60.179 50.000 0.00 0.00 0.00 2.83
181 182 0.507358 GACTCGACGGCTGACAAAAC 59.493 55.000 0.00 0.00 0.00 2.43
182 183 0.103390 TGACTCGACGGCTGACAAAA 59.897 50.000 0.00 0.00 0.00 2.44
183 184 0.318699 CTGACTCGACGGCTGACAAA 60.319 55.000 0.00 0.00 0.00 2.83
184 185 1.170290 TCTGACTCGACGGCTGACAA 61.170 55.000 0.00 0.00 0.00 3.18
185 186 0.960861 ATCTGACTCGACGGCTGACA 60.961 55.000 0.00 0.00 0.00 3.58
186 187 1.015109 TATCTGACTCGACGGCTGAC 58.985 55.000 0.00 0.00 0.00 3.51
187 188 1.671328 CTTATCTGACTCGACGGCTGA 59.329 52.381 0.00 1.10 0.00 4.26
188 189 1.671328 TCTTATCTGACTCGACGGCTG 59.329 52.381 0.00 0.00 0.00 4.85
189 190 2.039818 TCTTATCTGACTCGACGGCT 57.960 50.000 0.00 0.00 0.00 5.52
190 191 2.290916 TGATCTTATCTGACTCGACGGC 59.709 50.000 0.00 0.00 0.00 5.68
191 192 4.035792 ACTTGATCTTATCTGACTCGACGG 59.964 45.833 0.00 0.00 0.00 4.79
192 193 4.966970 CACTTGATCTTATCTGACTCGACG 59.033 45.833 0.00 0.00 0.00 5.12
193 194 5.277825 CCACTTGATCTTATCTGACTCGAC 58.722 45.833 0.00 0.00 0.00 4.20
194 195 4.202060 GCCACTTGATCTTATCTGACTCGA 60.202 45.833 0.00 0.00 0.00 4.04
195 196 4.047822 GCCACTTGATCTTATCTGACTCG 58.952 47.826 0.00 0.00 0.00 4.18
196 197 4.047822 CGCCACTTGATCTTATCTGACTC 58.952 47.826 0.00 0.00 0.00 3.36
197 198 3.701542 TCGCCACTTGATCTTATCTGACT 59.298 43.478 0.00 0.00 0.00 3.41
198 199 4.046938 TCGCCACTTGATCTTATCTGAC 57.953 45.455 0.00 0.00 0.00 3.51
199 200 4.081697 TGTTCGCCACTTGATCTTATCTGA 60.082 41.667 0.00 0.00 0.00 3.27
200 201 4.183865 TGTTCGCCACTTGATCTTATCTG 58.816 43.478 0.00 0.00 0.00 2.90
201 202 4.160439 TCTGTTCGCCACTTGATCTTATCT 59.840 41.667 0.00 0.00 0.00 1.98
202 203 4.433615 TCTGTTCGCCACTTGATCTTATC 58.566 43.478 0.00 0.00 0.00 1.75
203 204 4.471904 TCTGTTCGCCACTTGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
204 205 3.953712 TCTGTTCGCCACTTGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
205 206 2.839486 TCTGTTCGCCACTTGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
206 207 2.625737 CATCTGTTCGCCACTTGATCT 58.374 47.619 0.00 0.00 0.00 2.75
207 208 1.667724 CCATCTGTTCGCCACTTGATC 59.332 52.381 0.00 0.00 0.00 2.92
208 209 1.742761 CCATCTGTTCGCCACTTGAT 58.257 50.000 0.00 0.00 0.00 2.57
209 210 0.955428 GCCATCTGTTCGCCACTTGA 60.955 55.000 0.00 0.00 0.00 3.02
210 211 1.503542 GCCATCTGTTCGCCACTTG 59.496 57.895 0.00 0.00 0.00 3.16
211 212 1.675641 GGCCATCTGTTCGCCACTT 60.676 57.895 0.00 0.00 42.52 3.16
212 213 1.264749 TAGGCCATCTGTTCGCCACT 61.265 55.000 5.01 0.00 45.56 4.00
213 214 0.179045 ATAGGCCATCTGTTCGCCAC 60.179 55.000 5.01 0.00 45.56 5.01
214 215 0.106708 GATAGGCCATCTGTTCGCCA 59.893 55.000 5.01 0.00 45.56 5.69
215 216 0.106708 TGATAGGCCATCTGTTCGCC 59.893 55.000 5.01 0.00 43.35 5.54
216 217 2.175878 ATGATAGGCCATCTGTTCGC 57.824 50.000 5.01 0.00 34.46 4.70
217 218 3.990469 GTGTATGATAGGCCATCTGTTCG 59.010 47.826 5.01 0.00 34.46 3.95
218 219 4.202357 TGGTGTATGATAGGCCATCTGTTC 60.202 45.833 5.01 0.00 34.46 3.18
219 220 3.716353 TGGTGTATGATAGGCCATCTGTT 59.284 43.478 5.01 0.00 34.46 3.16
220 221 3.317406 TGGTGTATGATAGGCCATCTGT 58.683 45.455 5.01 2.70 34.46 3.41
221 222 4.564782 ATGGTGTATGATAGGCCATCTG 57.435 45.455 5.01 0.00 35.21 2.90
224 225 2.237143 CGGATGGTGTATGATAGGCCAT 59.763 50.000 5.01 7.25 42.04 4.40
225 226 1.623311 CGGATGGTGTATGATAGGCCA 59.377 52.381 5.01 0.00 0.00 5.36
226 227 1.066143 CCGGATGGTGTATGATAGGCC 60.066 57.143 0.00 0.00 0.00 5.19
227 228 1.676014 GCCGGATGGTGTATGATAGGC 60.676 57.143 5.05 0.00 37.67 3.93
228 229 1.066143 GGCCGGATGGTGTATGATAGG 60.066 57.143 5.05 0.00 37.67 2.57
229 230 1.902508 AGGCCGGATGGTGTATGATAG 59.097 52.381 5.05 0.00 37.67 2.08
230 231 2.024176 AGGCCGGATGGTGTATGATA 57.976 50.000 5.05 0.00 37.67 2.15
231 232 1.140312 AAGGCCGGATGGTGTATGAT 58.860 50.000 5.05 0.00 37.67 2.45
232 233 1.414919 GTAAGGCCGGATGGTGTATGA 59.585 52.381 5.05 0.00 37.67 2.15
233 234 1.542547 GGTAAGGCCGGATGGTGTATG 60.543 57.143 5.05 0.00 37.67 2.39
234 235 0.763035 GGTAAGGCCGGATGGTGTAT 59.237 55.000 5.05 0.00 37.67 2.29
235 236 1.339644 GGGTAAGGCCGGATGGTGTA 61.340 60.000 5.05 0.00 38.44 2.90
236 237 2.676265 GGGTAAGGCCGGATGGTGT 61.676 63.158 5.05 0.00 38.44 4.16
237 238 2.192175 GGGTAAGGCCGGATGGTG 59.808 66.667 5.05 0.00 38.44 4.17
238 239 2.285818 TGGGTAAGGCCGGATGGT 60.286 61.111 5.05 0.00 38.44 3.55
239 240 2.192175 GTGGGTAAGGCCGGATGG 59.808 66.667 5.05 0.00 38.44 3.51
240 241 2.192175 GGTGGGTAAGGCCGGATG 59.808 66.667 5.05 0.00 38.44 3.51
241 242 2.285818 TGGTGGGTAAGGCCGGAT 60.286 61.111 5.05 0.00 38.44 4.18
242 243 3.324108 GTGGTGGGTAAGGCCGGA 61.324 66.667 5.05 0.00 38.44 5.14
243 244 3.327404 AGTGGTGGGTAAGGCCGG 61.327 66.667 0.00 0.00 38.44 6.13
244 245 1.546589 TACAGTGGTGGGTAAGGCCG 61.547 60.000 0.00 0.00 38.44 6.13
245 246 0.916809 ATACAGTGGTGGGTAAGGCC 59.083 55.000 0.00 0.00 0.00 5.19
246 247 3.646637 AGATATACAGTGGTGGGTAAGGC 59.353 47.826 0.00 0.00 0.00 4.35
247 248 5.888982 AAGATATACAGTGGTGGGTAAGG 57.111 43.478 0.00 0.00 0.00 2.69
248 249 8.647796 TGATTAAGATATACAGTGGTGGGTAAG 58.352 37.037 0.00 0.00 0.00 2.34
249 250 8.555896 TGATTAAGATATACAGTGGTGGGTAA 57.444 34.615 0.00 0.00 0.00 2.85
250 251 8.736097 ATGATTAAGATATACAGTGGTGGGTA 57.264 34.615 0.00 0.00 0.00 3.69
251 252 7.633018 ATGATTAAGATATACAGTGGTGGGT 57.367 36.000 0.00 0.00 0.00 4.51
270 271 9.866655 ACAAATGTATGGTGAAGGTATATGATT 57.133 29.630 0.00 0.00 0.00 2.57
271 272 9.507329 GACAAATGTATGGTGAAGGTATATGAT 57.493 33.333 0.00 0.00 0.00 2.45
272 273 7.936847 GGACAAATGTATGGTGAAGGTATATGA 59.063 37.037 0.00 0.00 0.00 2.15
273 274 7.095229 CGGACAAATGTATGGTGAAGGTATATG 60.095 40.741 0.00 0.00 0.00 1.78
274 275 6.934645 CGGACAAATGTATGGTGAAGGTATAT 59.065 38.462 0.00 0.00 0.00 0.86
275 276 6.285224 CGGACAAATGTATGGTGAAGGTATA 58.715 40.000 0.00 0.00 0.00 1.47
276 277 5.123227 CGGACAAATGTATGGTGAAGGTAT 58.877 41.667 0.00 0.00 0.00 2.73
277 278 4.509616 CGGACAAATGTATGGTGAAGGTA 58.490 43.478 0.00 0.00 0.00 3.08
278 279 3.343617 CGGACAAATGTATGGTGAAGGT 58.656 45.455 0.00 0.00 0.00 3.50
279 280 2.682856 CCGGACAAATGTATGGTGAAGG 59.317 50.000 0.00 0.00 0.00 3.46
280 281 2.097466 GCCGGACAAATGTATGGTGAAG 59.903 50.000 5.05 0.00 0.00 3.02
281 282 2.088423 GCCGGACAAATGTATGGTGAA 58.912 47.619 5.05 0.00 0.00 3.18
282 283 1.680555 GGCCGGACAAATGTATGGTGA 60.681 52.381 5.05 0.00 0.00 4.02
283 284 0.738389 GGCCGGACAAATGTATGGTG 59.262 55.000 5.05 0.00 0.00 4.17
284 285 0.746563 CGGCCGGACAAATGTATGGT 60.747 55.000 20.10 0.00 0.00 3.55
285 286 1.444119 CCGGCCGGACAAATGTATGG 61.444 60.000 41.82 6.56 37.50 2.74
286 287 2.021722 CCGGCCGGACAAATGTATG 58.978 57.895 41.82 6.81 37.50 2.39
287 288 4.551729 CCGGCCGGACAAATGTAT 57.448 55.556 41.82 0.00 37.50 2.29
316 317 4.399618 GGCCAAATTTCTAAAGGAGGACTC 59.600 45.833 0.00 0.00 0.00 3.36
321 322 4.010349 AGTCGGCCAAATTTCTAAAGGAG 58.990 43.478 2.24 0.00 0.00 3.69
370 371 8.554835 TGTTTCTAAAATCATCAATCACCGTA 57.445 30.769 0.00 0.00 0.00 4.02
423 424 8.066000 GTGGGCGTTAATTAATTCATAGTACAC 58.934 37.037 3.39 4.37 0.00 2.90
428 429 5.467399 TCCGTGGGCGTTAATTAATTCATAG 59.533 40.000 3.39 0.00 36.15 2.23
479 480 1.746615 CAAGTGGGTCGCTGGATGG 60.747 63.158 0.00 0.00 0.00 3.51
523 524 7.011857 GCACATCCTTTCCTCTAGATAAACTTG 59.988 40.741 0.00 0.00 0.00 3.16
586 587 2.679450 TCCACCATGTTCTTCGTAACG 58.321 47.619 0.00 0.00 31.76 3.18
593 594 2.109834 TCAACCCATCCACCATGTTCTT 59.890 45.455 0.00 0.00 0.00 2.52
611 612 7.817418 AAAATAAGCACCAGTTAGAACTCAA 57.183 32.000 0.00 0.00 37.08 3.02
852 854 2.601314 CGCCTCGTCGACATCAAATTAA 59.399 45.455 17.16 0.00 0.00 1.40
976 978 4.102054 GGAATGGTCTTAATTAGTCGGGGA 59.898 45.833 0.00 0.00 0.00 4.81
977 979 4.386711 GGAATGGTCTTAATTAGTCGGGG 58.613 47.826 0.00 0.00 0.00 5.73
978 980 4.386711 GGGAATGGTCTTAATTAGTCGGG 58.613 47.826 0.00 0.00 0.00 5.14
979 981 4.386711 GGGGAATGGTCTTAATTAGTCGG 58.613 47.826 0.00 0.00 0.00 4.79
980 982 4.056050 CGGGGAATGGTCTTAATTAGTCG 58.944 47.826 0.00 0.00 0.00 4.18
982 984 4.720273 AGTCGGGGAATGGTCTTAATTAGT 59.280 41.667 0.00 0.00 0.00 2.24
983 985 5.291905 AGTCGGGGAATGGTCTTAATTAG 57.708 43.478 0.00 0.00 0.00 1.73
984 986 6.811634 TTAGTCGGGGAATGGTCTTAATTA 57.188 37.500 0.00 0.00 0.00 1.40
985 987 5.703730 TTAGTCGGGGAATGGTCTTAATT 57.296 39.130 0.00 0.00 0.00 1.40
986 988 5.906772 ATTAGTCGGGGAATGGTCTTAAT 57.093 39.130 0.00 0.00 0.00 1.40
1216 1220 3.060602 GTTGAGCTTACAGACTCACACC 58.939 50.000 0.00 0.00 42.42 4.16
1224 1228 3.802139 CGTCACAAAGTTGAGCTTACAGA 59.198 43.478 0.00 0.00 36.17 3.41
1312 1316 1.078497 CTCGCCATGCTTACCACCA 60.078 57.895 0.00 0.00 0.00 4.17
1420 1424 5.688814 ACTATTCCCAGGTTTACCTACAC 57.311 43.478 0.14 0.00 46.65 2.90
1464 1468 5.394224 CGGCGTGTATTCCTATAGATTGGAT 60.394 44.000 0.00 0.00 31.94 3.41
1731 1789 2.477863 GCACTTGTTCGTGTTTGCTCTT 60.478 45.455 0.00 0.00 37.24 2.85
1793 1851 0.443869 GCACGTGTGGCTACAGAATG 59.556 55.000 18.38 3.50 46.00 2.67
1843 1901 0.248458 CGCTGCAAAAACGGTTCACT 60.248 50.000 0.00 0.00 0.00 3.41
1853 1911 2.804167 CCCACACACGCTGCAAAA 59.196 55.556 0.00 0.00 0.00 2.44
1899 1967 2.746277 CCCTCCGGCCAAACTTCG 60.746 66.667 2.24 0.00 0.00 3.79
1910 1978 4.875713 CCGCCAATTCCCCCTCCG 62.876 72.222 0.00 0.00 0.00 4.63
2325 2510 3.195002 CTGGTGGTATGCGTGCGG 61.195 66.667 0.00 0.00 0.00 5.69
2628 2828 4.125703 CTGCTCACTTCTTCAACTCTTGT 58.874 43.478 0.00 0.00 0.00 3.16
3250 3453 3.852578 AGGTGGTAGACAAGGGATTCAAT 59.147 43.478 0.00 0.00 0.00 2.57
3418 3649 0.749049 GCAAGGATCCCTCCAATTGC 59.251 55.000 15.80 15.80 44.79 3.56
3573 3805 9.668497 CCTAATTAACCTAGCAAAACTCTAGTT 57.332 33.333 0.00 0.00 40.50 2.24
3828 4061 0.660488 TTCGACACCACAACACATGC 59.340 50.000 0.00 0.00 0.00 4.06
3928 4161 5.531287 ACAAATCGAGAACCTAAACTTTGCT 59.469 36.000 0.00 0.00 0.00 3.91
3934 4167 4.995487 AGTGGACAAATCGAGAACCTAAAC 59.005 41.667 0.00 0.00 0.00 2.01
3969 4202 7.670009 AATTCATGAAAAATTTCGGCATGAA 57.330 28.000 27.23 27.23 39.38 2.57
4280 4528 0.827925 TCTCAGTCTCAGCACCGGTT 60.828 55.000 2.97 0.00 0.00 4.44
4303 4551 0.965439 GCTGGTCTGAGTCTCAGTGT 59.035 55.000 25.68 0.00 44.58 3.55
4389 4637 1.141053 AGGAAGTCGTTGCCTCTTTGT 59.859 47.619 0.00 0.00 0.00 2.83
4557 4805 9.030452 GGAGCTCCTCATATTTTCTATCTTCTA 57.970 37.037 26.25 0.00 31.08 2.10
4622 4870 7.042051 CGTGATTGTCGGATTATCCTTTACAAT 60.042 37.037 23.77 23.77 40.98 2.71
4623 4871 6.256975 CGTGATTGTCGGATTATCCTTTACAA 59.743 38.462 18.85 18.85 36.48 2.41
4624 4872 5.751509 CGTGATTGTCGGATTATCCTTTACA 59.248 40.000 9.78 8.04 33.30 2.41
4625 4873 5.751990 ACGTGATTGTCGGATTATCCTTTAC 59.248 40.000 9.78 5.63 33.30 2.01
4626 4874 5.909477 ACGTGATTGTCGGATTATCCTTTA 58.091 37.500 9.78 0.00 33.30 1.85
4627 4875 4.766375 ACGTGATTGTCGGATTATCCTTT 58.234 39.130 9.78 0.00 33.30 3.11
4628 4876 4.402056 ACGTGATTGTCGGATTATCCTT 57.598 40.909 9.78 0.00 33.30 3.36
4629 4877 5.524971 TTACGTGATTGTCGGATTATCCT 57.475 39.130 9.78 0.00 33.30 3.24
4630 4878 7.088905 ACTATTACGTGATTGTCGGATTATCC 58.911 38.462 0.14 0.14 0.00 2.59
4631 4879 9.275231 CTACTATTACGTGATTGTCGGATTATC 57.725 37.037 10.43 0.00 0.00 1.75
4632 4880 8.790718 ACTACTATTACGTGATTGTCGGATTAT 58.209 33.333 10.43 0.00 0.00 1.28
4633 4881 8.158169 ACTACTATTACGTGATTGTCGGATTA 57.842 34.615 10.43 0.00 0.00 1.75
4634 4882 7.035840 ACTACTATTACGTGATTGTCGGATT 57.964 36.000 10.43 0.00 0.00 3.01
4635 4883 6.630444 ACTACTATTACGTGATTGTCGGAT 57.370 37.500 10.43 0.00 0.00 4.18
4636 4884 6.441093 AACTACTATTACGTGATTGTCGGA 57.559 37.500 10.43 0.00 0.00 4.55
4637 4885 6.748658 TGAAACTACTATTACGTGATTGTCGG 59.251 38.462 10.43 8.03 0.00 4.79
4638 4886 7.730067 TGAAACTACTATTACGTGATTGTCG 57.270 36.000 10.43 7.61 0.00 4.35
4651 4899 9.343539 GCCTCCTTGAATATTTGAAACTACTAT 57.656 33.333 0.00 0.00 0.00 2.12
4652 4900 8.548877 AGCCTCCTTGAATATTTGAAACTACTA 58.451 33.333 0.00 0.00 0.00 1.82
4653 4901 7.406104 AGCCTCCTTGAATATTTGAAACTACT 58.594 34.615 0.00 0.00 0.00 2.57
4654 4902 7.631717 AGCCTCCTTGAATATTTGAAACTAC 57.368 36.000 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.