Multiple sequence alignment - TraesCS4A01G448000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G448000 chr4A 100.000 4436 0 0 993 5428 714844462 714848897 0.000000e+00 8155.0
1 TraesCS4A01G448000 chr4A 79.615 1609 296 21 1007 2602 715007007 715008596 0.000000e+00 1127.0
2 TraesCS4A01G448000 chr4A 78.215 1602 310 28 1016 2602 715098705 715100282 0.000000e+00 990.0
3 TraesCS4A01G448000 chr4A 76.580 1614 336 29 1007 2602 715354856 715356445 0.000000e+00 850.0
4 TraesCS4A01G448000 chr4A 75.326 1686 363 33 994 2660 718473802 718472151 0.000000e+00 763.0
5 TraesCS4A01G448000 chr4A 75.658 1520 297 48 1004 2496 718562954 718561481 0.000000e+00 693.0
6 TraesCS4A01G448000 chr4A 79.957 933 174 10 1007 1932 714993759 714994685 0.000000e+00 675.0
7 TraesCS4A01G448000 chr4A 100.000 317 0 0 1 317 714843470 714843786 2.180000e-163 586.0
8 TraesCS4A01G448000 chr4A 78.108 740 137 14 1872 2602 715239133 715239856 1.070000e-121 448.0
9 TraesCS4A01G448000 chr4A 96.739 92 2 1 86 176 714843470 714843561 9.420000e-33 152.0
10 TraesCS4A01G448000 chr4A 96.739 92 2 1 1 92 714843555 714843645 9.420000e-33 152.0
11 TraesCS4A01G448000 chrUn 99.549 2883 7 1 2026 4908 328054403 328057279 0.000000e+00 5247.0
12 TraesCS4A01G448000 chrUn 99.634 1092 4 0 4337 5428 434881824 434882915 0.000000e+00 1995.0
13 TraesCS4A01G448000 chrUn 78.983 1613 300 25 1007 2602 89851744 89853334 0.000000e+00 1066.0
14 TraesCS4A01G448000 chrUn 100.000 461 0 0 4968 5428 288724177 288724637 0.000000e+00 852.0
15 TraesCS4A01G448000 chrUn 100.000 317 0 0 1 317 315201057 315200741 2.180000e-163 586.0
16 TraesCS4A01G448000 chrUn 95.833 96 1 2 4 97 315200969 315200875 9.420000e-33 152.0
17 TraesCS4A01G448000 chrUn 95.833 96 1 2 89 183 315201054 315200961 9.420000e-33 152.0
18 TraesCS4A01G448000 chr7A 79.244 1667 306 28 1007 2656 17802153 17800510 0.000000e+00 1127.0
19 TraesCS4A01G448000 chr7A 78.593 1663 324 19 1007 2656 18432562 18434205 0.000000e+00 1072.0
20 TraesCS4A01G448000 chr7A 76.520 1678 356 27 994 2655 17697146 17695491 0.000000e+00 883.0
21 TraesCS4A01G448000 chr7A 76.613 1441 279 33 994 2418 17467082 17465684 0.000000e+00 743.0
22 TraesCS4A01G448000 chr7D 79.450 1601 295 22 1019 2605 18107763 18106183 0.000000e+00 1105.0
23 TraesCS4A01G448000 chr7D 77.004 1609 344 18 1007 2605 18003473 18001881 0.000000e+00 900.0
24 TraesCS4A01G448000 chr7D 100.000 33 0 0 4018 4050 101098966 101098934 1.630000e-05 62.1
25 TraesCS4A01G448000 chr6D 100.000 29 0 0 4017 4045 436862748 436862720 3.000000e-03 54.7
26 TraesCS4A01G448000 chr6D 100.000 28 0 0 4017 4044 12086424 12086451 1.000000e-02 52.8
27 TraesCS4A01G448000 chr6B 100.000 29 0 0 4017 4045 660645841 660645813 3.000000e-03 54.7
28 TraesCS4A01G448000 chr2D 100.000 29 0 0 4017 4045 5730537 5730509 3.000000e-03 54.7
29 TraesCS4A01G448000 chr2D 100.000 29 0 0 4017 4045 121777030 121777058 3.000000e-03 54.7
30 TraesCS4A01G448000 chr2A 100.000 29 0 0 4017 4045 125951668 125951696 3.000000e-03 54.7
31 TraesCS4A01G448000 chr2A 96.970 33 0 1 4018 4050 637977474 637977505 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G448000 chr4A 714843470 714848897 5427 False 2261.25 8155 98.3695 1 5428 4 chr4A.!!$F6 5427
1 TraesCS4A01G448000 chr4A 715007007 715008596 1589 False 1127.00 1127 79.6150 1007 2602 1 chr4A.!!$F2 1595
2 TraesCS4A01G448000 chr4A 715098705 715100282 1577 False 990.00 990 78.2150 1016 2602 1 chr4A.!!$F3 1586
3 TraesCS4A01G448000 chr4A 715354856 715356445 1589 False 850.00 850 76.5800 1007 2602 1 chr4A.!!$F5 1595
4 TraesCS4A01G448000 chr4A 718472151 718473802 1651 True 763.00 763 75.3260 994 2660 1 chr4A.!!$R1 1666
5 TraesCS4A01G448000 chr4A 718561481 718562954 1473 True 693.00 693 75.6580 1004 2496 1 chr4A.!!$R2 1492
6 TraesCS4A01G448000 chr4A 714993759 714994685 926 False 675.00 675 79.9570 1007 1932 1 chr4A.!!$F1 925
7 TraesCS4A01G448000 chr4A 715239133 715239856 723 False 448.00 448 78.1080 1872 2602 1 chr4A.!!$F4 730
8 TraesCS4A01G448000 chrUn 328054403 328057279 2876 False 5247.00 5247 99.5490 2026 4908 1 chrUn.!!$F3 2882
9 TraesCS4A01G448000 chrUn 434881824 434882915 1091 False 1995.00 1995 99.6340 4337 5428 1 chrUn.!!$F4 1091
10 TraesCS4A01G448000 chrUn 89851744 89853334 1590 False 1066.00 1066 78.9830 1007 2602 1 chrUn.!!$F1 1595
11 TraesCS4A01G448000 chr7A 17800510 17802153 1643 True 1127.00 1127 79.2440 1007 2656 1 chr7A.!!$R3 1649
12 TraesCS4A01G448000 chr7A 18432562 18434205 1643 False 1072.00 1072 78.5930 1007 2656 1 chr7A.!!$F1 1649
13 TraesCS4A01G448000 chr7A 17695491 17697146 1655 True 883.00 883 76.5200 994 2655 1 chr7A.!!$R2 1661
14 TraesCS4A01G448000 chr7A 17465684 17467082 1398 True 743.00 743 76.6130 994 2418 1 chr7A.!!$R1 1424
15 TraesCS4A01G448000 chr7D 18106183 18107763 1580 True 1105.00 1105 79.4500 1019 2605 1 chr7D.!!$R2 1586
16 TraesCS4A01G448000 chr7D 18001881 18003473 1592 True 900.00 900 77.0040 1007 2605 1 chr7D.!!$R1 1598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.037605 GTTCCATCTCCACCGTTCGT 60.038 55.000 0.00 0.00 0.00 3.85 F
49 50 0.037697 TCCATCTCCACCGTTCGTTG 60.038 55.000 0.00 0.00 0.00 4.10 F
1221 1222 0.107643 TGGATGTCAACACCGCAGAA 59.892 50.000 0.00 0.00 0.00 3.02 F
1694 1696 0.242017 GAGCCAGTTGATGCCACAAC 59.758 55.000 12.97 12.97 46.97 3.32 F
1806 1809 0.460987 GCTGCCTACCACTAGCTGTG 60.461 60.000 0.00 2.67 45.80 3.66 F
3425 3437 1.488393 CTCCTCCCCTAAGCTGGAAAG 59.512 57.143 0.00 0.00 0.00 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1170 1171 0.895559 GCTCCACCTTGGGTTTGGAG 60.896 60.000 16.17 16.17 44.16 3.86 R
1431 1433 1.064017 ACAACCTTCCCTTCAAGTGCA 60.064 47.619 0.00 0.00 0.00 4.57 R
3259 3271 1.596727 GAGAATGAGATTCGGCAGTGC 59.403 52.381 6.55 6.55 43.92 4.40 R
3563 3575 2.359850 GCAGCATGGGACGGTTCA 60.360 61.111 0.00 0.00 35.86 3.18 R
3753 3765 9.868277 AGTAGTTTAATTGAATGAGAGTGAGAG 57.132 33.333 0.00 0.00 0.00 3.20 R
4958 4970 2.028420 ATGACTGCAGCGCTAATTGA 57.972 45.000 15.27 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.590530 ATTTGTAGCTCAACCAAACACAA 57.409 34.783 0.00 0.00 35.61 3.33
23 24 4.364415 TTGTAGCTCAACCAAACACAAC 57.636 40.909 0.00 0.00 0.00 3.32
24 25 2.685897 TGTAGCTCAACCAAACACAACC 59.314 45.455 0.00 0.00 0.00 3.77
25 26 2.143876 AGCTCAACCAAACACAACCT 57.856 45.000 0.00 0.00 0.00 3.50
26 27 3.290948 AGCTCAACCAAACACAACCTA 57.709 42.857 0.00 0.00 0.00 3.08
27 28 3.626930 AGCTCAACCAAACACAACCTAA 58.373 40.909 0.00 0.00 0.00 2.69
28 29 3.632145 AGCTCAACCAAACACAACCTAAG 59.368 43.478 0.00 0.00 0.00 2.18
29 30 3.380320 GCTCAACCAAACACAACCTAAGT 59.620 43.478 0.00 0.00 0.00 2.24
30 31 4.142249 GCTCAACCAAACACAACCTAAGTT 60.142 41.667 0.00 0.00 36.33 2.66
31 32 5.570234 TCAACCAAACACAACCTAAGTTC 57.430 39.130 0.00 0.00 32.45 3.01
32 33 4.399934 TCAACCAAACACAACCTAAGTTCC 59.600 41.667 0.00 0.00 32.45 3.62
33 34 3.970842 ACCAAACACAACCTAAGTTCCA 58.029 40.909 0.00 0.00 32.45 3.53
34 35 4.542697 ACCAAACACAACCTAAGTTCCAT 58.457 39.130 0.00 0.00 32.45 3.41
35 36 4.583073 ACCAAACACAACCTAAGTTCCATC 59.417 41.667 0.00 0.00 32.45 3.51
36 37 4.827284 CCAAACACAACCTAAGTTCCATCT 59.173 41.667 0.00 0.00 32.45 2.90
37 38 5.048713 CCAAACACAACCTAAGTTCCATCTC 60.049 44.000 0.00 0.00 32.45 2.75
38 39 4.287766 ACACAACCTAAGTTCCATCTCC 57.712 45.455 0.00 0.00 32.45 3.71
39 40 3.650942 ACACAACCTAAGTTCCATCTCCA 59.349 43.478 0.00 0.00 32.45 3.86
40 41 4.003648 CACAACCTAAGTTCCATCTCCAC 58.996 47.826 0.00 0.00 32.45 4.02
41 42 3.009143 ACAACCTAAGTTCCATCTCCACC 59.991 47.826 0.00 0.00 32.45 4.61
42 43 1.831736 ACCTAAGTTCCATCTCCACCG 59.168 52.381 0.00 0.00 0.00 4.94
43 44 1.831736 CCTAAGTTCCATCTCCACCGT 59.168 52.381 0.00 0.00 0.00 4.83
44 45 2.236395 CCTAAGTTCCATCTCCACCGTT 59.764 50.000 0.00 0.00 0.00 4.44
45 46 2.474410 AAGTTCCATCTCCACCGTTC 57.526 50.000 0.00 0.00 0.00 3.95
46 47 0.246635 AGTTCCATCTCCACCGTTCG 59.753 55.000 0.00 0.00 0.00 3.95
47 48 0.037605 GTTCCATCTCCACCGTTCGT 60.038 55.000 0.00 0.00 0.00 3.85
48 49 0.682852 TTCCATCTCCACCGTTCGTT 59.317 50.000 0.00 0.00 0.00 3.85
49 50 0.037697 TCCATCTCCACCGTTCGTTG 60.038 55.000 0.00 0.00 0.00 4.10
50 51 0.320421 CCATCTCCACCGTTCGTTGT 60.320 55.000 0.00 0.00 0.00 3.32
51 52 1.067425 CCATCTCCACCGTTCGTTGTA 60.067 52.381 0.00 0.00 0.00 2.41
52 53 2.418197 CCATCTCCACCGTTCGTTGTAT 60.418 50.000 0.00 0.00 0.00 2.29
53 54 3.259064 CATCTCCACCGTTCGTTGTATT 58.741 45.455 0.00 0.00 0.00 1.89
54 55 2.679450 TCTCCACCGTTCGTTGTATTG 58.321 47.619 0.00 0.00 0.00 1.90
55 56 1.730064 CTCCACCGTTCGTTGTATTGG 59.270 52.381 0.00 0.00 0.00 3.16
56 57 0.800012 CCACCGTTCGTTGTATTGGG 59.200 55.000 0.00 0.00 0.00 4.12
57 58 1.515081 CACCGTTCGTTGTATTGGGT 58.485 50.000 0.00 0.00 0.00 4.51
58 59 1.874872 CACCGTTCGTTGTATTGGGTT 59.125 47.619 0.00 0.00 0.00 4.11
59 60 2.291190 CACCGTTCGTTGTATTGGGTTT 59.709 45.455 0.00 0.00 0.00 3.27
60 61 2.950975 ACCGTTCGTTGTATTGGGTTTT 59.049 40.909 0.00 0.00 0.00 2.43
61 62 3.003585 ACCGTTCGTTGTATTGGGTTTTC 59.996 43.478 0.00 0.00 0.00 2.29
62 63 3.003482 CCGTTCGTTGTATTGGGTTTTCA 59.997 43.478 0.00 0.00 0.00 2.69
63 64 3.969981 CGTTCGTTGTATTGGGTTTTCAC 59.030 43.478 0.00 0.00 0.00 3.18
64 65 4.496010 CGTTCGTTGTATTGGGTTTTCACA 60.496 41.667 0.00 0.00 0.00 3.58
65 66 4.555348 TCGTTGTATTGGGTTTTCACAC 57.445 40.909 0.00 0.00 30.35 3.82
66 67 3.315749 TCGTTGTATTGGGTTTTCACACC 59.684 43.478 0.00 0.00 35.88 4.16
67 68 3.316868 CGTTGTATTGGGTTTTCACACCT 59.683 43.478 0.00 0.00 36.97 4.00
68 69 4.555906 CGTTGTATTGGGTTTTCACACCTC 60.556 45.833 0.00 0.00 36.97 3.85
69 70 4.447138 TGTATTGGGTTTTCACACCTCT 57.553 40.909 0.00 0.00 36.97 3.69
70 71 5.570205 TGTATTGGGTTTTCACACCTCTA 57.430 39.130 0.00 0.00 36.97 2.43
71 72 5.942961 TGTATTGGGTTTTCACACCTCTAA 58.057 37.500 0.00 0.00 36.97 2.10
72 73 6.548321 TGTATTGGGTTTTCACACCTCTAAT 58.452 36.000 0.00 0.00 36.97 1.73
73 74 7.691213 TGTATTGGGTTTTCACACCTCTAATA 58.309 34.615 0.00 0.00 36.97 0.98
74 75 7.827236 TGTATTGGGTTTTCACACCTCTAATAG 59.173 37.037 0.00 0.00 36.97 1.73
99 100 8.825774 AGGTATATTGATATATGTGCTCAACCA 58.174 33.333 0.00 0.00 32.16 3.67
100 101 9.448438 GGTATATTGATATATGTGCTCAACCAA 57.552 33.333 0.00 0.00 32.16 3.67
103 104 7.643569 ATTGATATATGTGCTCAACCAAACA 57.356 32.000 0.00 0.00 32.16 2.83
104 105 6.435430 TGATATATGTGCTCAACCAAACAC 57.565 37.500 0.00 0.00 0.00 3.32
105 106 5.942826 TGATATATGTGCTCAACCAAACACA 59.057 36.000 0.00 0.00 46.16 3.72
106 107 6.432472 TGATATATGTGCTCAACCAAACACAA 59.568 34.615 0.00 0.00 45.33 3.33
107 108 2.645730 TGTGCTCAACCAAACACAAC 57.354 45.000 0.00 0.00 39.91 3.32
108 109 1.203523 TGTGCTCAACCAAACACAACC 59.796 47.619 0.00 0.00 39.91 3.77
109 110 1.476488 GTGCTCAACCAAACACAACCT 59.524 47.619 0.00 0.00 33.23 3.50
110 111 2.685897 GTGCTCAACCAAACACAACCTA 59.314 45.455 0.00 0.00 33.23 3.08
111 112 3.129638 GTGCTCAACCAAACACAACCTAA 59.870 43.478 0.00 0.00 33.23 2.69
112 113 3.380004 TGCTCAACCAAACACAACCTAAG 59.620 43.478 0.00 0.00 0.00 2.18
113 114 3.380320 GCTCAACCAAACACAACCTAAGT 59.620 43.478 0.00 0.00 0.00 2.24
114 115 4.142249 GCTCAACCAAACACAACCTAAGTT 60.142 41.667 0.00 0.00 36.33 2.66
115 116 5.570234 TCAACCAAACACAACCTAAGTTC 57.430 39.130 0.00 0.00 32.45 3.01
116 117 4.399934 TCAACCAAACACAACCTAAGTTCC 59.600 41.667 0.00 0.00 32.45 3.62
117 118 3.970842 ACCAAACACAACCTAAGTTCCA 58.029 40.909 0.00 0.00 32.45 3.53
118 119 4.542697 ACCAAACACAACCTAAGTTCCAT 58.457 39.130 0.00 0.00 32.45 3.41
119 120 4.583073 ACCAAACACAACCTAAGTTCCATC 59.417 41.667 0.00 0.00 32.45 3.51
120 121 4.827284 CCAAACACAACCTAAGTTCCATCT 59.173 41.667 0.00 0.00 32.45 2.90
121 122 5.048713 CCAAACACAACCTAAGTTCCATCTC 60.049 44.000 0.00 0.00 32.45 2.75
122 123 4.287766 ACACAACCTAAGTTCCATCTCC 57.712 45.455 0.00 0.00 32.45 3.71
123 124 3.650942 ACACAACCTAAGTTCCATCTCCA 59.349 43.478 0.00 0.00 32.45 3.86
124 125 4.003648 CACAACCTAAGTTCCATCTCCAC 58.996 47.826 0.00 0.00 32.45 4.02
125 126 3.009143 ACAACCTAAGTTCCATCTCCACC 59.991 47.826 0.00 0.00 32.45 4.61
126 127 1.831736 ACCTAAGTTCCATCTCCACCG 59.168 52.381 0.00 0.00 0.00 4.94
127 128 1.831736 CCTAAGTTCCATCTCCACCGT 59.168 52.381 0.00 0.00 0.00 4.83
128 129 2.236395 CCTAAGTTCCATCTCCACCGTT 59.764 50.000 0.00 0.00 0.00 4.44
129 130 2.951229 AAGTTCCATCTCCACCGTTT 57.049 45.000 0.00 0.00 0.00 3.60
130 131 2.185004 AGTTCCATCTCCACCGTTTG 57.815 50.000 0.00 0.00 0.00 2.93
131 132 1.420138 AGTTCCATCTCCACCGTTTGT 59.580 47.619 0.00 0.00 0.00 2.83
132 133 2.158667 AGTTCCATCTCCACCGTTTGTT 60.159 45.455 0.00 0.00 0.00 2.83
133 134 1.890876 TCCATCTCCACCGTTTGTTG 58.109 50.000 0.00 0.00 0.00 3.33
134 135 1.142060 TCCATCTCCACCGTTTGTTGT 59.858 47.619 0.00 0.00 0.00 3.32
135 136 2.369203 TCCATCTCCACCGTTTGTTGTA 59.631 45.455 0.00 0.00 0.00 2.41
136 137 3.008594 TCCATCTCCACCGTTTGTTGTAT 59.991 43.478 0.00 0.00 0.00 2.29
137 138 3.756434 CCATCTCCACCGTTTGTTGTATT 59.244 43.478 0.00 0.00 0.00 1.89
138 139 4.379394 CCATCTCCACCGTTTGTTGTATTG 60.379 45.833 0.00 0.00 0.00 1.90
139 140 3.142951 TCTCCACCGTTTGTTGTATTGG 58.857 45.455 0.00 0.00 0.00 3.16
140 141 2.227865 CTCCACCGTTTGTTGTATTGGG 59.772 50.000 0.00 0.00 0.00 4.12
141 142 1.957877 CCACCGTTTGTTGTATTGGGT 59.042 47.619 0.00 0.00 0.00 4.51
142 143 2.362717 CCACCGTTTGTTGTATTGGGTT 59.637 45.455 0.00 0.00 0.00 4.11
143 144 3.181474 CCACCGTTTGTTGTATTGGGTTT 60.181 43.478 0.00 0.00 0.00 3.27
144 145 4.434520 CACCGTTTGTTGTATTGGGTTTT 58.565 39.130 0.00 0.00 0.00 2.43
145 146 4.504826 CACCGTTTGTTGTATTGGGTTTTC 59.495 41.667 0.00 0.00 0.00 2.29
146 147 4.159879 ACCGTTTGTTGTATTGGGTTTTCA 59.840 37.500 0.00 0.00 0.00 2.69
147 148 4.504826 CCGTTTGTTGTATTGGGTTTTCAC 59.495 41.667 0.00 0.00 0.00 3.18
148 149 5.103000 CGTTTGTTGTATTGGGTTTTCACA 58.897 37.500 0.00 0.00 0.00 3.58
149 150 5.004916 CGTTTGTTGTATTGGGTTTTCACAC 59.995 40.000 0.00 0.00 30.35 3.82
150 151 4.657436 TGTTGTATTGGGTTTTCACACC 57.343 40.909 0.00 0.00 35.88 4.16
151 152 4.282496 TGTTGTATTGGGTTTTCACACCT 58.718 39.130 0.00 0.00 36.97 4.00
152 153 4.339814 TGTTGTATTGGGTTTTCACACCTC 59.660 41.667 0.00 0.00 36.97 3.85
153 154 4.447138 TGTATTGGGTTTTCACACCTCT 57.553 40.909 0.00 0.00 36.97 3.69
154 155 5.570205 TGTATTGGGTTTTCACACCTCTA 57.430 39.130 0.00 0.00 36.97 2.43
155 156 5.942961 TGTATTGGGTTTTCACACCTCTAA 58.057 37.500 0.00 0.00 36.97 2.10
156 157 6.548321 TGTATTGGGTTTTCACACCTCTAAT 58.452 36.000 0.00 0.00 36.97 1.73
157 158 7.691213 TGTATTGGGTTTTCACACCTCTAATA 58.309 34.615 0.00 0.00 36.97 0.98
158 159 7.827236 TGTATTGGGTTTTCACACCTCTAATAG 59.173 37.037 0.00 0.00 36.97 1.73
191 192 9.681692 TGATATATGTGTGCTCAATATTTTTGC 57.318 29.630 0.00 0.00 0.00 3.68
192 193 8.732413 ATATATGTGTGCTCAATATTTTTGCG 57.268 30.769 0.00 0.00 0.00 4.85
193 194 4.495911 TGTGTGCTCAATATTTTTGCGA 57.504 36.364 0.00 0.00 0.00 5.10
194 195 4.475028 TGTGTGCTCAATATTTTTGCGAG 58.525 39.130 0.00 0.00 0.00 5.03
195 196 3.853671 GTGTGCTCAATATTTTTGCGAGG 59.146 43.478 0.00 0.00 0.00 4.63
196 197 3.119531 TGTGCTCAATATTTTTGCGAGGG 60.120 43.478 0.00 0.00 0.00 4.30
197 198 3.088532 TGCTCAATATTTTTGCGAGGGT 58.911 40.909 0.00 0.00 0.00 4.34
198 199 3.509575 TGCTCAATATTTTTGCGAGGGTT 59.490 39.130 0.00 0.00 0.00 4.11
199 200 4.021544 TGCTCAATATTTTTGCGAGGGTTT 60.022 37.500 0.00 0.00 0.00 3.27
200 201 5.184096 TGCTCAATATTTTTGCGAGGGTTTA 59.816 36.000 0.00 0.00 0.00 2.01
201 202 6.127479 TGCTCAATATTTTTGCGAGGGTTTAT 60.127 34.615 0.00 0.00 0.00 1.40
202 203 6.756542 GCTCAATATTTTTGCGAGGGTTTATT 59.243 34.615 0.00 0.00 0.00 1.40
203 204 7.277760 GCTCAATATTTTTGCGAGGGTTTATTT 59.722 33.333 0.00 0.00 0.00 1.40
204 205 9.150348 CTCAATATTTTTGCGAGGGTTTATTTT 57.850 29.630 0.00 0.00 0.00 1.82
205 206 9.495572 TCAATATTTTTGCGAGGGTTTATTTTT 57.504 25.926 0.00 0.00 0.00 1.94
227 228 7.932120 TTTTTCGTTTTCTGAAGTTGTTCAA 57.068 28.000 0.00 0.00 42.27 2.69
228 229 6.921332 TTTCGTTTTCTGAAGTTGTTCAAC 57.079 33.333 7.50 7.50 42.27 3.18
229 230 5.873179 TCGTTTTCTGAAGTTGTTCAACT 57.127 34.783 11.75 11.75 42.27 3.16
230 231 6.971527 TCGTTTTCTGAAGTTGTTCAACTA 57.028 33.333 16.84 3.83 42.27 2.24
231 232 7.548196 TCGTTTTCTGAAGTTGTTCAACTAT 57.452 32.000 16.84 8.71 42.27 2.12
232 233 7.406553 TCGTTTTCTGAAGTTGTTCAACTATG 58.593 34.615 16.84 10.79 42.27 2.23
233 234 7.065324 TCGTTTTCTGAAGTTGTTCAACTATGT 59.935 33.333 16.84 3.75 42.27 2.29
234 235 7.696453 CGTTTTCTGAAGTTGTTCAACTATGTT 59.304 33.333 16.84 3.42 42.27 2.71
235 236 9.010366 GTTTTCTGAAGTTGTTCAACTATGTTC 57.990 33.333 16.84 11.74 42.27 3.18
236 237 7.857734 TTCTGAAGTTGTTCAACTATGTTCA 57.142 32.000 16.84 14.91 42.27 3.18
237 238 8.450578 TTCTGAAGTTGTTCAACTATGTTCAT 57.549 30.769 16.84 1.78 42.27 2.57
238 239 8.450578 TCTGAAGTTGTTCAACTATGTTCATT 57.549 30.769 16.84 1.13 42.27 2.57
239 240 8.559536 TCTGAAGTTGTTCAACTATGTTCATTC 58.440 33.333 16.84 9.69 42.27 2.67
240 241 8.219546 TGAAGTTGTTCAACTATGTTCATTCA 57.780 30.769 16.84 11.73 39.85 2.57
241 242 8.681806 TGAAGTTGTTCAACTATGTTCATTCAA 58.318 29.630 16.84 0.59 39.85 2.69
242 243 9.515020 GAAGTTGTTCAACTATGTTCATTCAAA 57.485 29.630 16.84 0.00 32.36 2.69
250 251 9.500785 TCAACTATGTTCATTCAAATACTCACA 57.499 29.630 0.00 0.00 0.00 3.58
253 254 8.400947 ACTATGTTCATTCAAATACTCACATGC 58.599 33.333 0.00 0.00 0.00 4.06
254 255 6.572167 TGTTCATTCAAATACTCACATGCA 57.428 33.333 0.00 0.00 0.00 3.96
255 256 7.160547 TGTTCATTCAAATACTCACATGCAT 57.839 32.000 0.00 0.00 0.00 3.96
256 257 8.278729 TGTTCATTCAAATACTCACATGCATA 57.721 30.769 0.00 0.00 0.00 3.14
257 258 8.905850 TGTTCATTCAAATACTCACATGCATAT 58.094 29.630 0.00 0.00 0.00 1.78
258 259 9.177304 GTTCATTCAAATACTCACATGCATATG 57.823 33.333 0.00 0.00 40.24 1.78
268 269 3.497297 ACATGCATATGTGTGTGCTTG 57.503 42.857 0.00 10.45 45.54 4.01
269 270 3.497297 CATGCATATGTGTGTGCTTGT 57.503 42.857 0.00 0.00 42.33 3.16
270 271 2.993449 TGCATATGTGTGTGCTTGTG 57.007 45.000 4.29 0.00 42.33 3.33
271 272 2.228925 TGCATATGTGTGTGCTTGTGT 58.771 42.857 4.29 0.00 42.33 3.72
272 273 2.030981 TGCATATGTGTGTGCTTGTGTG 60.031 45.455 4.29 0.00 42.33 3.82
273 274 2.030893 GCATATGTGTGTGCTTGTGTGT 60.031 45.455 4.29 0.00 39.16 3.72
274 275 3.557508 CATATGTGTGTGCTTGTGTGTG 58.442 45.455 0.00 0.00 0.00 3.82
275 276 1.462616 ATGTGTGTGCTTGTGTGTGT 58.537 45.000 0.00 0.00 0.00 3.72
276 277 0.520847 TGTGTGTGCTTGTGTGTGTG 59.479 50.000 0.00 0.00 0.00 3.82
277 278 0.521291 GTGTGTGCTTGTGTGTGTGT 59.479 50.000 0.00 0.00 0.00 3.72
278 279 0.520847 TGTGTGCTTGTGTGTGTGTG 59.479 50.000 0.00 0.00 0.00 3.82
279 280 0.521291 GTGTGCTTGTGTGTGTGTGT 59.479 50.000 0.00 0.00 0.00 3.72
280 281 0.520847 TGTGCTTGTGTGTGTGTGTG 59.479 50.000 0.00 0.00 0.00 3.82
281 282 0.521291 GTGCTTGTGTGTGTGTGTGT 59.479 50.000 0.00 0.00 0.00 3.72
282 283 0.520847 TGCTTGTGTGTGTGTGTGTG 59.479 50.000 0.00 0.00 0.00 3.82
283 284 0.521291 GCTTGTGTGTGTGTGTGTGT 59.479 50.000 0.00 0.00 0.00 3.72
284 285 1.728825 GCTTGTGTGTGTGTGTGTGTG 60.729 52.381 0.00 0.00 0.00 3.82
285 286 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
286 287 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
287 288 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
288 289 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
289 290 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
290 291 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
291 292 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
292 293 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
293 294 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
294 295 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
295 296 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
296 297 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
297 298 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
298 299 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
299 300 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
300 301 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
301 302 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
302 303 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
303 304 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
304 305 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
305 306 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
306 307 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
307 308 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
308 309 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
309 310 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
310 311 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
311 312 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
312 313 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
313 314 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
314 315 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
315 316 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
316 317 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1061 1062 8.566260 AGTAAGTATTAGGAACACACGCTATAG 58.434 37.037 0.00 0.00 0.00 1.31
1065 1066 3.611766 AGGAACACACGCTATAGCTTT 57.388 42.857 21.98 6.53 39.32 3.51
1080 1081 5.839517 ATAGCTTTATCAAGATGGAGGCT 57.160 39.130 0.00 0.00 29.24 4.58
1081 1082 3.818180 AGCTTTATCAAGATGGAGGCTG 58.182 45.455 0.00 0.00 30.57 4.85
1082 1083 3.201708 AGCTTTATCAAGATGGAGGCTGT 59.798 43.478 0.00 0.00 30.57 4.40
1083 1084 3.314635 GCTTTATCAAGATGGAGGCTGTG 59.685 47.826 0.00 0.00 30.57 3.66
1093 1094 2.229792 TGGAGGCTGTGAACAACATTC 58.770 47.619 0.00 0.00 38.39 2.67
1095 1096 2.227388 GGAGGCTGTGAACAACATTCAG 59.773 50.000 0.00 0.00 38.39 3.02
1097 1098 1.270550 GGCTGTGAACAACATTCAGGG 59.729 52.381 0.00 0.00 38.39 4.45
1101 1102 1.886542 GTGAACAACATTCAGGGGGTC 59.113 52.381 0.00 0.00 0.00 4.46
1170 1171 1.322442 AAGCAGAACTTGTGGGCTTC 58.678 50.000 0.00 0.00 40.52 3.86
1176 1177 2.091885 AGAACTTGTGGGCTTCTCCAAA 60.092 45.455 0.00 0.00 38.72 3.28
1184 1185 0.178961 GGCTTCTCCAAACCCAAGGT 60.179 55.000 0.00 0.00 33.63 3.50
1221 1222 0.107643 TGGATGTCAACACCGCAGAA 59.892 50.000 0.00 0.00 0.00 3.02
1326 1328 7.802117 AGGAAGATATCGTAAAGAAATTCCCA 58.198 34.615 9.70 0.00 35.38 4.37
1328 1330 8.722394 GGAAGATATCGTAAAGAAATTCCCATC 58.278 37.037 0.00 0.00 0.00 3.51
1360 1362 6.295249 TGGATCACAGTTTCACAGTCATTTA 58.705 36.000 0.00 0.00 0.00 1.40
1370 1372 9.003658 AGTTTCACAGTCATTTAACAAGATAGG 57.996 33.333 0.00 0.00 0.00 2.57
1371 1373 8.784043 GTTTCACAGTCATTTAACAAGATAGGT 58.216 33.333 0.00 0.00 0.00 3.08
1372 1374 7.905604 TCACAGTCATTTAACAAGATAGGTG 57.094 36.000 0.00 0.00 0.00 4.00
1391 1393 4.164796 AGGTGTGCTCAAGGATATGATCAA 59.835 41.667 0.00 0.00 28.24 2.57
1421 1423 4.826274 TGGGTGGAGATTCACTAAAGAG 57.174 45.455 0.00 0.00 37.75 2.85
1431 1433 7.498570 GGAGATTCACTAAAGAGATGCTTGAAT 59.501 37.037 0.00 0.00 36.80 2.57
1433 1435 5.808042 TCACTAAAGAGATGCTTGAATGC 57.192 39.130 0.00 0.00 36.80 3.56
1449 1451 2.683211 ATGCACTTGAAGGGAAGGTT 57.317 45.000 0.00 0.00 0.00 3.50
1467 1469 2.224548 GGTTGTGCAAGTAGAGGACCTT 60.225 50.000 0.00 0.00 0.00 3.50
1468 1470 3.007614 GGTTGTGCAAGTAGAGGACCTTA 59.992 47.826 0.00 0.00 0.00 2.69
1484 1486 4.313282 GACCTTACCAAGTACCTCACAAC 58.687 47.826 0.00 0.00 0.00 3.32
1486 1488 4.349930 ACCTTACCAAGTACCTCACAACAT 59.650 41.667 0.00 0.00 0.00 2.71
1491 1493 3.253188 CCAAGTACCTCACAACATGGTTG 59.747 47.826 7.51 7.51 35.48 3.77
1495 1497 3.297134 ACCTCACAACATGGTTGAAGT 57.703 42.857 15.35 3.99 0.00 3.01
1542 1544 2.224843 TGACTTGTGGACCATTGATGCT 60.225 45.455 0.00 0.00 0.00 3.79
1557 1559 3.972133 TGATGCTTGGAAGTGGATCAAT 58.028 40.909 0.00 0.00 0.00 2.57
1569 1571 8.469200 TGGAAGTGGATCAATGATATTGTTTTC 58.531 33.333 0.00 0.00 0.00 2.29
1570 1572 8.689972 GGAAGTGGATCAATGATATTGTTTTCT 58.310 33.333 0.00 0.00 0.00 2.52
1614 1616 7.650903 GGTAGTCGGATAATAGTAACAACAAGG 59.349 40.741 0.00 0.00 0.00 3.61
1661 1663 5.743422 GCACTCTTGAATCCCTTATCTACCC 60.743 48.000 0.00 0.00 0.00 3.69
1694 1696 0.242017 GAGCCAGTTGATGCCACAAC 59.758 55.000 12.97 12.97 46.97 3.32
1701 1703 2.331194 GTTGATGCCACAACATTGCTC 58.669 47.619 15.07 0.00 46.19 4.26
1728 1730 6.279513 AGAAAGAGTAGGAGAACACATGAG 57.720 41.667 0.00 0.00 0.00 2.90
1768 1770 6.706270 TGAGAACTTCAAGGACATAGTTGAAC 59.294 38.462 0.00 0.00 37.67 3.18
1791 1794 4.830826 ACTAGTTAAAAAGTGTGGCTGC 57.169 40.909 0.00 0.00 0.00 5.25
1806 1809 0.460987 GCTGCCTACCACTAGCTGTG 60.461 60.000 0.00 2.67 45.80 3.66
1824 1827 5.131142 AGCTGTGCTTACAATAGGAGGTATT 59.869 40.000 0.00 0.00 33.89 1.89
1830 1833 5.177696 GCTTACAATAGGAGGTATTCTTGCG 59.822 44.000 0.00 0.00 0.00 4.85
1838 1841 5.420409 AGGAGGTATTCTTGCGACTAAAAG 58.580 41.667 0.00 0.00 0.00 2.27
1840 1844 5.161943 AGGTATTCTTGCGACTAAAAGGT 57.838 39.130 0.00 0.00 0.00 3.50
1844 1848 6.036844 GGTATTCTTGCGACTAAAAGGTTAGG 59.963 42.308 0.00 0.00 41.03 2.69
1845 1849 4.612264 TCTTGCGACTAAAAGGTTAGGT 57.388 40.909 0.00 0.00 41.03 3.08
1848 1852 4.546829 TGCGACTAAAAGGTTAGGTGAT 57.453 40.909 0.00 0.00 41.03 3.06
1855 1859 6.800890 ACTAAAAGGTTAGGTGATTGGGAAT 58.199 36.000 0.00 0.00 41.03 3.01
1856 1860 7.246027 ACTAAAAGGTTAGGTGATTGGGAATT 58.754 34.615 0.00 0.00 41.03 2.17
1935 1939 4.140805 AGGAGGATGGTTACTCTGAGCTAT 60.141 45.833 4.19 0.00 34.22 2.97
1937 1941 5.417580 GGAGGATGGTTACTCTGAGCTATAG 59.582 48.000 4.19 0.00 34.22 1.31
1947 1951 3.636300 CTCTGAGCTATAGTCACTTGCCT 59.364 47.826 0.84 0.00 0.00 4.75
1995 2001 2.981859 TAAGCATCTTTCCCGAGGAC 57.018 50.000 0.00 0.00 0.00 3.85
1997 2003 2.160721 AGCATCTTTCCCGAGGACTA 57.839 50.000 0.00 0.00 0.00 2.59
3259 3271 6.728411 AGTAAAACCTTGGAAATACTAGGGG 58.272 40.000 0.00 0.00 30.80 4.79
3425 3437 1.488393 CTCCTCCCCTAAGCTGGAAAG 59.512 57.143 0.00 0.00 0.00 2.62
3563 3575 4.253685 CGAAATGAAGTGGACATACACCT 58.746 43.478 0.00 0.00 42.28 4.00
3758 3770 3.598273 GGTCAGCCTACCTCTCTCA 57.402 57.895 0.00 0.00 36.53 3.27
3949 3961 1.516892 GGCAGGAGAGAGCTCACAG 59.483 63.158 17.77 2.74 43.14 3.66
4327 4339 6.859112 TCTGTCCTCTGCTAATAGAAAACT 57.141 37.500 0.00 0.00 0.00 2.66
4908 4920 5.163540 TGCTGTTATGACAATTATGCATGCA 60.164 36.000 25.04 25.04 34.85 3.96
4922 4934 1.774639 CATGCACAACTTTCAGGCAC 58.225 50.000 0.00 0.00 37.30 5.01
4966 4978 4.637534 TGTTGCCTGAATCTCTCAATTAGC 59.362 41.667 0.00 0.00 32.17 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.348164 GTTGTGTTTGGTTGAGCTACAAAT 58.652 37.500 8.11 0.00 40.36 2.32
1 2 4.381079 GGTTGTGTTTGGTTGAGCTACAAA 60.381 41.667 0.00 0.00 40.36 2.83
2 3 3.129638 GGTTGTGTTTGGTTGAGCTACAA 59.870 43.478 0.00 0.00 36.02 2.41
3 4 2.685897 GGTTGTGTTTGGTTGAGCTACA 59.314 45.455 0.00 0.00 0.00 2.74
4 5 2.949644 AGGTTGTGTTTGGTTGAGCTAC 59.050 45.455 0.00 0.00 0.00 3.58
5 6 3.290948 AGGTTGTGTTTGGTTGAGCTA 57.709 42.857 0.00 0.00 0.00 3.32
6 7 2.143876 AGGTTGTGTTTGGTTGAGCT 57.856 45.000 0.00 0.00 0.00 4.09
7 8 3.380320 ACTTAGGTTGTGTTTGGTTGAGC 59.620 43.478 0.00 0.00 0.00 4.26
8 9 5.449999 GGAACTTAGGTTGTGTTTGGTTGAG 60.450 44.000 0.00 0.00 35.58 3.02
9 10 4.399934 GGAACTTAGGTTGTGTTTGGTTGA 59.600 41.667 0.00 0.00 35.58 3.18
10 11 4.158764 TGGAACTTAGGTTGTGTTTGGTTG 59.841 41.667 0.00 0.00 35.58 3.77
11 12 4.345854 TGGAACTTAGGTTGTGTTTGGTT 58.654 39.130 0.00 0.00 35.58 3.67
12 13 3.970842 TGGAACTTAGGTTGTGTTTGGT 58.029 40.909 0.00 0.00 35.58 3.67
13 14 4.827284 AGATGGAACTTAGGTTGTGTTTGG 59.173 41.667 0.00 0.00 35.58 3.28
14 15 5.048713 GGAGATGGAACTTAGGTTGTGTTTG 60.049 44.000 0.00 0.00 35.58 2.93
15 16 5.070685 GGAGATGGAACTTAGGTTGTGTTT 58.929 41.667 0.00 0.00 35.58 2.83
16 17 4.104102 TGGAGATGGAACTTAGGTTGTGTT 59.896 41.667 0.00 0.00 35.58 3.32
17 18 3.650942 TGGAGATGGAACTTAGGTTGTGT 59.349 43.478 0.00 0.00 35.58 3.72
18 19 4.003648 GTGGAGATGGAACTTAGGTTGTG 58.996 47.826 0.00 0.00 35.58 3.33
19 20 3.009143 GGTGGAGATGGAACTTAGGTTGT 59.991 47.826 0.00 0.00 35.58 3.32
20 21 3.610911 GGTGGAGATGGAACTTAGGTTG 58.389 50.000 0.00 0.00 35.58 3.77
21 22 2.236395 CGGTGGAGATGGAACTTAGGTT 59.764 50.000 0.00 0.00 38.52 3.50
22 23 1.831736 CGGTGGAGATGGAACTTAGGT 59.168 52.381 0.00 0.00 0.00 3.08
23 24 1.831736 ACGGTGGAGATGGAACTTAGG 59.168 52.381 0.00 0.00 0.00 2.69
24 25 3.522553 GAACGGTGGAGATGGAACTTAG 58.477 50.000 0.00 0.00 0.00 2.18
25 26 2.094390 CGAACGGTGGAGATGGAACTTA 60.094 50.000 0.00 0.00 0.00 2.24
26 27 1.337823 CGAACGGTGGAGATGGAACTT 60.338 52.381 0.00 0.00 0.00 2.66
27 28 0.246635 CGAACGGTGGAGATGGAACT 59.753 55.000 0.00 0.00 0.00 3.01
28 29 0.037605 ACGAACGGTGGAGATGGAAC 60.038 55.000 0.00 0.00 0.00 3.62
29 30 0.682852 AACGAACGGTGGAGATGGAA 59.317 50.000 0.00 0.00 0.00 3.53
30 31 0.037697 CAACGAACGGTGGAGATGGA 60.038 55.000 4.23 0.00 0.00 3.41
31 32 0.320421 ACAACGAACGGTGGAGATGG 60.320 55.000 16.31 0.00 37.09 3.51
32 33 2.357327 TACAACGAACGGTGGAGATG 57.643 50.000 16.31 0.00 37.09 2.90
33 34 3.259064 CAATACAACGAACGGTGGAGAT 58.741 45.455 16.31 4.34 37.09 2.75
34 35 2.610976 CCAATACAACGAACGGTGGAGA 60.611 50.000 16.31 2.17 37.09 3.71
35 36 1.730064 CCAATACAACGAACGGTGGAG 59.270 52.381 16.31 0.00 37.09 3.86
36 37 1.608542 CCCAATACAACGAACGGTGGA 60.609 52.381 16.31 8.49 37.09 4.02
37 38 0.800012 CCCAATACAACGAACGGTGG 59.200 55.000 16.31 0.00 37.09 4.61
38 39 1.515081 ACCCAATACAACGAACGGTG 58.485 50.000 10.72 10.72 39.06 4.94
39 40 2.259266 AACCCAATACAACGAACGGT 57.741 45.000 0.00 0.00 0.00 4.83
40 41 3.003482 TGAAAACCCAATACAACGAACGG 59.997 43.478 0.00 0.00 0.00 4.44
41 42 3.969981 GTGAAAACCCAATACAACGAACG 59.030 43.478 0.00 0.00 0.00 3.95
42 43 4.736307 GTGTGAAAACCCAATACAACGAAC 59.264 41.667 0.00 0.00 0.00 3.95
43 44 4.202030 GGTGTGAAAACCCAATACAACGAA 60.202 41.667 0.00 0.00 33.79 3.85
44 45 3.315749 GGTGTGAAAACCCAATACAACGA 59.684 43.478 0.00 0.00 33.79 3.85
45 46 3.316868 AGGTGTGAAAACCCAATACAACG 59.683 43.478 0.00 0.00 41.54 4.10
46 47 4.583073 AGAGGTGTGAAAACCCAATACAAC 59.417 41.667 0.00 0.00 41.54 3.32
47 48 4.798882 AGAGGTGTGAAAACCCAATACAA 58.201 39.130 0.00 0.00 41.54 2.41
48 49 4.447138 AGAGGTGTGAAAACCCAATACA 57.553 40.909 0.00 0.00 41.54 2.29
49 50 7.282450 CCTATTAGAGGTGTGAAAACCCAATAC 59.718 40.741 0.00 0.00 41.54 1.89
50 51 7.343357 CCTATTAGAGGTGTGAAAACCCAATA 58.657 38.462 0.00 0.00 41.54 1.90
51 52 6.187682 CCTATTAGAGGTGTGAAAACCCAAT 58.812 40.000 0.00 0.00 41.54 3.16
52 53 5.566469 CCTATTAGAGGTGTGAAAACCCAA 58.434 41.667 0.00 0.00 41.54 4.12
53 54 5.174037 CCTATTAGAGGTGTGAAAACCCA 57.826 43.478 0.00 0.00 41.54 4.51
73 74 8.825774 TGGTTGAGCACATATATCAATATACCT 58.174 33.333 0.00 0.00 35.56 3.08
74 75 9.448438 TTGGTTGAGCACATATATCAATATACC 57.552 33.333 0.00 0.00 35.56 2.73
77 78 9.353431 TGTTTGGTTGAGCACATATATCAATAT 57.647 29.630 0.00 0.00 35.56 1.28
78 79 8.620416 GTGTTTGGTTGAGCACATATATCAATA 58.380 33.333 0.00 0.00 35.56 1.90
79 80 7.122501 TGTGTTTGGTTGAGCACATATATCAAT 59.877 33.333 0.00 0.00 37.00 2.57
80 81 6.432472 TGTGTTTGGTTGAGCACATATATCAA 59.568 34.615 0.00 0.00 37.00 2.57
81 82 5.942826 TGTGTTTGGTTGAGCACATATATCA 59.057 36.000 0.00 0.00 37.00 2.15
82 83 6.435430 TGTGTTTGGTTGAGCACATATATC 57.565 37.500 0.00 0.00 37.00 1.63
83 84 6.350110 GGTTGTGTTTGGTTGAGCACATATAT 60.350 38.462 0.00 0.00 40.82 0.86
84 85 5.048364 GGTTGTGTTTGGTTGAGCACATATA 60.048 40.000 0.00 0.00 40.82 0.86
85 86 4.261994 GGTTGTGTTTGGTTGAGCACATAT 60.262 41.667 0.00 0.00 40.82 1.78
86 87 3.067461 GGTTGTGTTTGGTTGAGCACATA 59.933 43.478 0.00 0.00 40.82 2.29
87 88 2.159114 GGTTGTGTTTGGTTGAGCACAT 60.159 45.455 0.00 0.00 40.82 3.21
88 89 1.203523 GGTTGTGTTTGGTTGAGCACA 59.796 47.619 0.00 0.00 39.68 4.57
89 90 1.476488 AGGTTGTGTTTGGTTGAGCAC 59.524 47.619 0.00 0.00 0.00 4.40
90 91 1.846007 AGGTTGTGTTTGGTTGAGCA 58.154 45.000 0.00 0.00 0.00 4.26
91 92 3.380320 ACTTAGGTTGTGTTTGGTTGAGC 59.620 43.478 0.00 0.00 0.00 4.26
92 93 5.449999 GGAACTTAGGTTGTGTTTGGTTGAG 60.450 44.000 0.00 0.00 35.58 3.02
93 94 4.399934 GGAACTTAGGTTGTGTTTGGTTGA 59.600 41.667 0.00 0.00 35.58 3.18
94 95 4.158764 TGGAACTTAGGTTGTGTTTGGTTG 59.841 41.667 0.00 0.00 35.58 3.77
95 96 4.345854 TGGAACTTAGGTTGTGTTTGGTT 58.654 39.130 0.00 0.00 35.58 3.67
96 97 3.970842 TGGAACTTAGGTTGTGTTTGGT 58.029 40.909 0.00 0.00 35.58 3.67
97 98 4.827284 AGATGGAACTTAGGTTGTGTTTGG 59.173 41.667 0.00 0.00 35.58 3.28
98 99 5.048713 GGAGATGGAACTTAGGTTGTGTTTG 60.049 44.000 0.00 0.00 35.58 2.93
99 100 5.070685 GGAGATGGAACTTAGGTTGTGTTT 58.929 41.667 0.00 0.00 35.58 2.83
100 101 4.104102 TGGAGATGGAACTTAGGTTGTGTT 59.896 41.667 0.00 0.00 35.58 3.32
101 102 3.650942 TGGAGATGGAACTTAGGTTGTGT 59.349 43.478 0.00 0.00 35.58 3.72
102 103 4.003648 GTGGAGATGGAACTTAGGTTGTG 58.996 47.826 0.00 0.00 35.58 3.33
103 104 3.009143 GGTGGAGATGGAACTTAGGTTGT 59.991 47.826 0.00 0.00 35.58 3.32
104 105 3.610911 GGTGGAGATGGAACTTAGGTTG 58.389 50.000 0.00 0.00 35.58 3.77
105 106 2.236395 CGGTGGAGATGGAACTTAGGTT 59.764 50.000 0.00 0.00 38.52 3.50
106 107 1.831736 CGGTGGAGATGGAACTTAGGT 59.168 52.381 0.00 0.00 0.00 3.08
107 108 1.831736 ACGGTGGAGATGGAACTTAGG 59.168 52.381 0.00 0.00 0.00 2.69
108 109 3.611766 AACGGTGGAGATGGAACTTAG 57.388 47.619 0.00 0.00 0.00 2.18
109 110 3.071892 ACAAACGGTGGAGATGGAACTTA 59.928 43.478 0.00 0.00 0.00 2.24
110 111 2.158667 ACAAACGGTGGAGATGGAACTT 60.159 45.455 0.00 0.00 0.00 2.66
111 112 1.420138 ACAAACGGTGGAGATGGAACT 59.580 47.619 0.00 0.00 0.00 3.01
112 113 1.892209 ACAAACGGTGGAGATGGAAC 58.108 50.000 0.00 0.00 0.00 3.62
113 114 2.226330 CAACAAACGGTGGAGATGGAA 58.774 47.619 0.00 0.00 0.00 3.53
114 115 1.142060 ACAACAAACGGTGGAGATGGA 59.858 47.619 0.00 0.00 0.00 3.41
115 116 1.604604 ACAACAAACGGTGGAGATGG 58.395 50.000 0.00 0.00 0.00 3.51
116 117 4.379394 CCAATACAACAAACGGTGGAGATG 60.379 45.833 0.00 0.00 0.00 2.90
117 118 3.756434 CCAATACAACAAACGGTGGAGAT 59.244 43.478 0.00 0.00 0.00 2.75
118 119 3.142951 CCAATACAACAAACGGTGGAGA 58.857 45.455 0.00 0.00 0.00 3.71
119 120 2.227865 CCCAATACAACAAACGGTGGAG 59.772 50.000 0.00 0.00 0.00 3.86
120 121 2.231529 CCCAATACAACAAACGGTGGA 58.768 47.619 0.00 0.00 0.00 4.02
121 122 1.957877 ACCCAATACAACAAACGGTGG 59.042 47.619 0.00 0.00 0.00 4.61
122 123 3.719173 AACCCAATACAACAAACGGTG 57.281 42.857 0.00 0.00 0.00 4.94
123 124 4.159879 TGAAAACCCAATACAACAAACGGT 59.840 37.500 0.00 0.00 0.00 4.83
124 125 4.504826 GTGAAAACCCAATACAACAAACGG 59.495 41.667 0.00 0.00 0.00 4.44
125 126 5.004916 GTGTGAAAACCCAATACAACAAACG 59.995 40.000 0.00 0.00 0.00 3.60
126 127 5.292345 GGTGTGAAAACCCAATACAACAAAC 59.708 40.000 0.00 0.00 33.79 2.93
127 128 5.187967 AGGTGTGAAAACCCAATACAACAAA 59.812 36.000 0.00 0.00 41.54 2.83
128 129 4.712337 AGGTGTGAAAACCCAATACAACAA 59.288 37.500 0.00 0.00 41.54 2.83
129 130 4.282496 AGGTGTGAAAACCCAATACAACA 58.718 39.130 0.00 0.00 41.54 3.33
130 131 4.583073 AGAGGTGTGAAAACCCAATACAAC 59.417 41.667 0.00 0.00 41.54 3.32
131 132 4.798882 AGAGGTGTGAAAACCCAATACAA 58.201 39.130 0.00 0.00 41.54 2.41
132 133 4.447138 AGAGGTGTGAAAACCCAATACA 57.553 40.909 0.00 0.00 41.54 2.29
133 134 7.282450 CCTATTAGAGGTGTGAAAACCCAATAC 59.718 40.741 0.00 0.00 41.54 1.89
134 135 7.343357 CCTATTAGAGGTGTGAAAACCCAATA 58.657 38.462 0.00 0.00 41.54 1.90
135 136 6.187682 CCTATTAGAGGTGTGAAAACCCAAT 58.812 40.000 0.00 0.00 41.54 3.16
136 137 5.566469 CCTATTAGAGGTGTGAAAACCCAA 58.434 41.667 0.00 0.00 41.54 4.12
137 138 5.174037 CCTATTAGAGGTGTGAAAACCCA 57.826 43.478 0.00 0.00 41.54 4.51
165 166 9.681692 GCAAAAATATTGAGCACACATATATCA 57.318 29.630 0.00 0.00 0.00 2.15
166 167 8.843733 CGCAAAAATATTGAGCACACATATATC 58.156 33.333 7.51 0.00 0.00 1.63
167 168 8.567104 TCGCAAAAATATTGAGCACACATATAT 58.433 29.630 7.51 0.00 0.00 0.86
168 169 7.924940 TCGCAAAAATATTGAGCACACATATA 58.075 30.769 7.51 0.00 0.00 0.86
169 170 6.794374 TCGCAAAAATATTGAGCACACATAT 58.206 32.000 7.51 0.00 0.00 1.78
170 171 6.188400 TCGCAAAAATATTGAGCACACATA 57.812 33.333 7.51 0.00 0.00 2.29
171 172 5.058149 TCGCAAAAATATTGAGCACACAT 57.942 34.783 7.51 0.00 0.00 3.21
172 173 4.475028 CTCGCAAAAATATTGAGCACACA 58.525 39.130 7.51 0.00 0.00 3.72
173 174 3.853671 CCTCGCAAAAATATTGAGCACAC 59.146 43.478 7.51 0.00 0.00 3.82
174 175 3.119531 CCCTCGCAAAAATATTGAGCACA 60.120 43.478 7.51 0.00 0.00 4.57
175 176 3.119495 ACCCTCGCAAAAATATTGAGCAC 60.119 43.478 7.51 0.00 0.00 4.40
176 177 3.088532 ACCCTCGCAAAAATATTGAGCA 58.911 40.909 7.51 0.00 0.00 4.26
177 178 3.782889 ACCCTCGCAAAAATATTGAGC 57.217 42.857 0.00 0.00 0.00 4.26
178 179 8.702163 AAATAAACCCTCGCAAAAATATTGAG 57.298 30.769 0.00 0.00 0.00 3.02
179 180 9.495572 AAAAATAAACCCTCGCAAAAATATTGA 57.504 25.926 0.00 0.00 0.00 2.57
203 204 7.779349 GTTGAACAACTTCAGAAAACGAAAAA 58.221 30.769 9.98 0.00 37.70 1.94
204 205 7.328157 GTTGAACAACTTCAGAAAACGAAAA 57.672 32.000 9.98 0.00 37.70 2.29
205 206 6.921332 GTTGAACAACTTCAGAAAACGAAA 57.079 33.333 9.98 0.00 37.70 3.46
224 225 9.500785 TGTGAGTATTTGAATGAACATAGTTGA 57.499 29.630 0.00 0.00 0.00 3.18
227 228 8.400947 GCATGTGAGTATTTGAATGAACATAGT 58.599 33.333 0.00 0.00 0.00 2.12
228 229 8.400186 TGCATGTGAGTATTTGAATGAACATAG 58.600 33.333 0.00 0.00 0.00 2.23
229 230 8.278729 TGCATGTGAGTATTTGAATGAACATA 57.721 30.769 0.00 0.00 0.00 2.29
230 231 7.160547 TGCATGTGAGTATTTGAATGAACAT 57.839 32.000 0.00 0.00 0.00 2.71
231 232 6.572167 TGCATGTGAGTATTTGAATGAACA 57.428 33.333 0.00 0.00 0.00 3.18
232 233 9.177304 CATATGCATGTGAGTATTTGAATGAAC 57.823 33.333 17.80 0.00 0.00 3.18
233 234 8.905850 ACATATGCATGTGAGTATTTGAATGAA 58.094 29.630 27.77 0.00 43.89 2.57
234 235 8.454570 ACATATGCATGTGAGTATTTGAATGA 57.545 30.769 27.77 0.00 43.89 2.57
248 249 2.821378 ACAAGCACACACATATGCATGT 59.179 40.909 10.16 0.00 45.93 3.21
249 250 3.175929 CACAAGCACACACATATGCATG 58.824 45.455 10.16 3.91 44.59 4.06
250 251 2.821378 ACACAAGCACACACATATGCAT 59.179 40.909 3.79 3.79 44.59 3.96
251 252 2.030981 CACACAAGCACACACATATGCA 60.031 45.455 1.58 0.00 44.59 3.96
252 253 2.030893 ACACACAAGCACACACATATGC 60.031 45.455 1.58 0.00 42.39 3.14
253 254 3.003585 ACACACACAAGCACACACATATG 59.996 43.478 0.00 0.00 0.00 1.78
254 255 3.003585 CACACACACAAGCACACACATAT 59.996 43.478 0.00 0.00 0.00 1.78
255 256 2.354199 CACACACACAAGCACACACATA 59.646 45.455 0.00 0.00 0.00 2.29
256 257 1.132834 CACACACACAAGCACACACAT 59.867 47.619 0.00 0.00 0.00 3.21
257 258 0.520847 CACACACACAAGCACACACA 59.479 50.000 0.00 0.00 0.00 3.72
258 259 0.521291 ACACACACACAAGCACACAC 59.479 50.000 0.00 0.00 0.00 3.82
259 260 0.520847 CACACACACACAAGCACACA 59.479 50.000 0.00 0.00 0.00 3.72
260 261 0.521291 ACACACACACACAAGCACAC 59.479 50.000 0.00 0.00 0.00 3.82
261 262 0.520847 CACACACACACACAAGCACA 59.479 50.000 0.00 0.00 0.00 4.57
262 263 0.521291 ACACACACACACACAAGCAC 59.479 50.000 0.00 0.00 0.00 4.40
263 264 0.520847 CACACACACACACACAAGCA 59.479 50.000 0.00 0.00 0.00 3.91
264 265 0.521291 ACACACACACACACACAAGC 59.479 50.000 0.00 0.00 0.00 4.01
265 266 1.535028 ACACACACACACACACACAAG 59.465 47.619 0.00 0.00 0.00 3.16
266 267 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
267 268 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
268 269 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
269 270 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
270 271 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
271 272 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
272 273 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
273 274 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
274 275 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
275 276 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
276 277 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
277 278 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
278 279 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
279 280 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
280 281 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
281 282 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
282 283 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
283 284 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
284 285 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
285 286 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
286 287 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
287 288 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
288 289 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
289 290 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
290 291 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
291 292 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
292 293 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
293 294 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
294 295 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
295 296 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
296 297 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
297 298 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
298 299 3.674225 CACACACACACACACACAC 57.326 52.632 0.00 0.00 0.00 3.82
1061 1062 3.314635 CACAGCCTCCATCTTGATAAAGC 59.685 47.826 0.00 0.00 0.00 3.51
1065 1066 3.519107 TGTTCACAGCCTCCATCTTGATA 59.481 43.478 0.00 0.00 0.00 2.15
1080 1081 1.216678 ACCCCCTGAATGTTGTTCACA 59.783 47.619 0.00 0.00 40.71 3.58
1081 1082 1.886542 GACCCCCTGAATGTTGTTCAC 59.113 52.381 0.00 0.00 0.00 3.18
1082 1083 1.496857 TGACCCCCTGAATGTTGTTCA 59.503 47.619 0.00 0.00 0.00 3.18
1083 1084 2.286365 TGACCCCCTGAATGTTGTTC 57.714 50.000 0.00 0.00 0.00 3.18
1093 1094 1.633432 TGTGTAGGAATTGACCCCCTG 59.367 52.381 0.00 0.00 0.00 4.45
1095 1096 1.913419 TCTGTGTAGGAATTGACCCCC 59.087 52.381 0.00 0.00 0.00 5.40
1097 1098 4.553330 TCTTCTGTGTAGGAATTGACCC 57.447 45.455 0.00 0.00 0.00 4.46
1101 1102 5.639506 ACGAACATCTTCTGTGTAGGAATTG 59.360 40.000 0.00 0.00 38.39 2.32
1170 1171 0.895559 GCTCCACCTTGGGTTTGGAG 60.896 60.000 16.17 16.17 44.16 3.86
1176 1177 1.668826 TAATCAGCTCCACCTTGGGT 58.331 50.000 0.00 0.00 38.32 4.51
1200 1201 1.167851 CTGCGGTGTTGACATCCATT 58.832 50.000 0.00 0.00 0.00 3.16
1221 1222 6.013554 ACACATATTACCTTGGCATTACCT 57.986 37.500 0.00 0.00 40.22 3.08
1300 1302 7.931948 TGGGAATTTCTTTACGATATCTTCCTC 59.068 37.037 11.96 5.80 0.00 3.71
1311 1313 4.494199 GCACGAGATGGGAATTTCTTTACG 60.494 45.833 0.00 0.00 0.00 3.18
1314 1316 3.690460 AGCACGAGATGGGAATTTCTTT 58.310 40.909 0.00 0.00 0.00 2.52
1326 1328 1.552337 ACTGTGATCCAAGCACGAGAT 59.448 47.619 0.00 0.00 39.07 2.75
1328 1330 1.800805 AACTGTGATCCAAGCACGAG 58.199 50.000 0.00 0.00 39.07 4.18
1360 1362 3.327757 TCCTTGAGCACACCTATCTTGTT 59.672 43.478 0.00 0.00 0.00 2.83
1370 1372 4.274459 GGTTGATCATATCCTTGAGCACAC 59.726 45.833 0.00 0.00 41.37 3.82
1371 1373 4.080413 TGGTTGATCATATCCTTGAGCACA 60.080 41.667 0.00 0.00 41.37 4.57
1372 1374 4.454678 TGGTTGATCATATCCTTGAGCAC 58.545 43.478 0.00 0.00 41.37 4.40
1431 1433 1.064017 ACAACCTTCCCTTCAAGTGCA 60.064 47.619 0.00 0.00 0.00 4.57
1433 1435 1.338020 GCACAACCTTCCCTTCAAGTG 59.662 52.381 0.00 0.00 0.00 3.16
1449 1451 2.565834 GGTAAGGTCCTCTACTTGCACA 59.434 50.000 0.00 0.00 31.98 4.57
1467 1469 3.649023 ACCATGTTGTGAGGTACTTGGTA 59.351 43.478 10.06 0.00 45.53 3.25
1468 1470 2.441750 ACCATGTTGTGAGGTACTTGGT 59.558 45.455 0.00 0.00 43.78 3.67
1542 1544 7.959658 AACAATATCATTGATCCACTTCCAA 57.040 32.000 1.55 0.00 0.00 3.53
1614 1616 3.841255 ACTCCTTTGCTAGGCCTATATCC 59.159 47.826 14.30 3.02 44.37 2.59
1620 1622 1.301293 GCACTCCTTTGCTAGGCCT 59.699 57.895 11.78 11.78 44.37 5.19
1661 1663 5.186021 TCAACTGGCTCTAGAGGTTTAAGAG 59.814 44.000 21.23 5.39 39.81 2.85
1694 1696 6.227298 TCCTACTCTTTCTTAGGAGCAATG 57.773 41.667 0.00 0.00 39.21 2.82
1701 1703 6.591750 TGTGTTCTCCTACTCTTTCTTAGG 57.408 41.667 0.00 0.00 36.88 2.69
1718 1720 1.281867 TCCCCATGTCCTCATGTGTTC 59.718 52.381 7.30 0.00 46.99 3.18
1728 1730 2.820197 GTTCTCAACTTTCCCCATGTCC 59.180 50.000 0.00 0.00 0.00 4.02
1768 1770 4.976116 GCAGCCACACTTTTTAACTAGTTG 59.024 41.667 18.56 3.38 0.00 3.16
1806 1809 5.177696 CGCAAGAATACCTCCTATTGTAAGC 59.822 44.000 0.00 0.00 43.02 3.09
1824 1827 4.039488 TCACCTAACCTTTTAGTCGCAAGA 59.961 41.667 0.00 0.00 36.89 3.02
1830 1833 5.812286 TCCCAATCACCTAACCTTTTAGTC 58.188 41.667 0.00 0.00 33.92 2.59
1838 1841 5.016831 AGACAAATTCCCAATCACCTAACC 58.983 41.667 0.00 0.00 0.00 2.85
1840 1844 9.403583 GTTATAGACAAATTCCCAATCACCTAA 57.596 33.333 0.00 0.00 0.00 2.69
1844 1848 7.639113 TGGTTATAGACAAATTCCCAATCAC 57.361 36.000 0.00 0.00 0.00 3.06
1845 1849 7.893302 AGTTGGTTATAGACAAATTCCCAATCA 59.107 33.333 0.00 0.00 33.68 2.57
1848 1852 6.661805 GGAGTTGGTTATAGACAAATTCCCAA 59.338 38.462 0.00 0.00 40.50 4.12
1855 1859 6.214615 TCAGATGGGAGTTGGTTATAGACAAA 59.785 38.462 0.00 0.00 0.00 2.83
1856 1860 5.724370 TCAGATGGGAGTTGGTTATAGACAA 59.276 40.000 0.00 0.00 0.00 3.18
1935 1939 6.211584 ACTTAAGATGAGAAGGCAAGTGACTA 59.788 38.462 10.09 0.00 29.55 2.59
1937 1941 5.241662 ACTTAAGATGAGAAGGCAAGTGAC 58.758 41.667 10.09 0.00 0.00 3.67
1947 1951 8.169977 ACAAAAAGCATGACTTAAGATGAGAA 57.830 30.769 10.09 0.00 37.75 2.87
3259 3271 1.596727 GAGAATGAGATTCGGCAGTGC 59.403 52.381 6.55 6.55 43.92 4.40
3425 3437 4.816925 GCAAGACTCCAGATATTTGTACCC 59.183 45.833 0.00 0.00 0.00 3.69
3563 3575 2.359850 GCAGCATGGGACGGTTCA 60.360 61.111 0.00 0.00 35.86 3.18
3753 3765 9.868277 AGTAGTTTAATTGAATGAGAGTGAGAG 57.132 33.333 0.00 0.00 0.00 3.20
3915 3927 2.283529 GCCGTCCCAGTCTCAGGAA 61.284 63.158 0.00 0.00 32.81 3.36
4908 4920 5.806654 ATAAATTGGTGCCTGAAAGTTGT 57.193 34.783 0.00 0.00 0.00 3.32
4922 4934 9.410556 GCAACATAGCCAGTATAAATAAATTGG 57.589 33.333 0.00 0.00 0.00 3.16
4958 4970 2.028420 ATGACTGCAGCGCTAATTGA 57.972 45.000 15.27 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.