Multiple sequence alignment - TraesCS4A01G447800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G447800 chr4A 100.000 3211 0 0 1 3211 714525478 714528688 0.000000e+00 5930
1 TraesCS4A01G447800 chr5B 97.041 2771 69 11 6 2772 696995470 696998231 0.000000e+00 4650
2 TraesCS4A01G447800 chr5B 96.023 2791 87 21 1 2773 16769427 16766643 0.000000e+00 4518
3 TraesCS4A01G447800 chr3B 96.320 2799 72 25 1 2772 792777995 792780789 0.000000e+00 4569
4 TraesCS4A01G447800 chr3B 97.618 2645 60 3 129 2772 825790833 825793475 0.000000e+00 4532
5 TraesCS4A01G447800 chr3B 97.507 2647 60 5 129 2773 13717781 13720423 0.000000e+00 4518
6 TraesCS4A01G447800 chr3B 100.000 132 0 0 6 137 762966 763097 8.900000e-61 244
7 TraesCS4A01G447800 chr3B 84.211 266 27 13 1 265 820817643 820817894 8.900000e-61 244
8 TraesCS4A01G447800 chr3B 98.540 137 1 1 1 137 794148227 794148092 1.150000e-59 241
9 TraesCS4A01G447800 chr4B 97.545 2648 64 1 129 2775 670196730 670194083 0.000000e+00 4529
10 TraesCS4A01G447800 chr4B 97.508 2648 65 1 129 2775 1893925 1896572 0.000000e+00 4523
11 TraesCS4A01G447800 chr1B 97.543 2646 63 2 129 2772 162175636 162172991 0.000000e+00 4525
12 TraesCS4A01G447800 chr2B 97.430 2646 65 3 129 2773 747106123 747103480 0.000000e+00 4506
13 TraesCS4A01G447800 chr7A 89.655 377 37 2 2836 3211 18095346 18094971 2.240000e-131 479
14 TraesCS4A01G447800 chr7A 92.000 250 20 0 2836 3085 18531041 18531290 5.100000e-93 351
15 TraesCS4A01G447800 chr7A 88.166 169 18 2 3043 3211 18531285 18531451 1.950000e-47 200
16 TraesCS4A01G447800 chrUn 99.265 136 0 1 1 136 396094723 396094589 8.900000e-61 244
17 TraesCS4A01G447800 chrUn 98.551 138 1 1 1 137 48724127 48724264 3.200000e-60 243
18 TraesCS4A01G447800 chrUn 98.540 137 1 1 1 137 60381227 60381362 1.150000e-59 241
19 TraesCS4A01G447800 chrUn 97.101 138 2 2 1 137 466639125 466639261 6.930000e-57 231
20 TraesCS4A01G447800 chr6B 97.122 139 2 2 1 138 22366955 22367092 1.930000e-57 233


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G447800 chr4A 714525478 714528688 3210 False 5930 5930 100.000 1 3211 1 chr4A.!!$F1 3210
1 TraesCS4A01G447800 chr5B 696995470 696998231 2761 False 4650 4650 97.041 6 2772 1 chr5B.!!$F1 2766
2 TraesCS4A01G447800 chr5B 16766643 16769427 2784 True 4518 4518 96.023 1 2773 1 chr5B.!!$R1 2772
3 TraesCS4A01G447800 chr3B 792777995 792780789 2794 False 4569 4569 96.320 1 2772 1 chr3B.!!$F3 2771
4 TraesCS4A01G447800 chr3B 825790833 825793475 2642 False 4532 4532 97.618 129 2772 1 chr3B.!!$F5 2643
5 TraesCS4A01G447800 chr3B 13717781 13720423 2642 False 4518 4518 97.507 129 2773 1 chr3B.!!$F2 2644
6 TraesCS4A01G447800 chr4B 670194083 670196730 2647 True 4529 4529 97.545 129 2775 1 chr4B.!!$R1 2646
7 TraesCS4A01G447800 chr4B 1893925 1896572 2647 False 4523 4523 97.508 129 2775 1 chr4B.!!$F1 2646
8 TraesCS4A01G447800 chr1B 162172991 162175636 2645 True 4525 4525 97.543 129 2772 1 chr1B.!!$R1 2643
9 TraesCS4A01G447800 chr2B 747103480 747106123 2643 True 4506 4506 97.430 129 2773 1 chr2B.!!$R1 2644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 608 2.103263 GGAGGGCAGATTCGACAATACT 59.897 50.000 0.0 0.0 0.00 2.12 F
1481 1511 1.341089 TGGTGATCCTACAGTCGAGCT 60.341 52.381 0.0 0.0 34.23 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 2235 2.307980 AGGACCTAAACACCCTTAAGGC 59.692 50.0 16.7 0.0 40.58 4.35 R
2854 2888 0.036858 GAGCAAGACTCCACAGGGTC 60.037 60.0 0.0 0.0 39.75 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
580 608 2.103263 GGAGGGCAGATTCGACAATACT 59.897 50.000 0.00 0.00 0.00 2.12
624 652 3.378512 ACTGGAGCTATGATCCTGTGAA 58.621 45.455 12.30 0.00 44.51 3.18
625 653 3.776969 ACTGGAGCTATGATCCTGTGAAA 59.223 43.478 12.30 0.00 44.51 2.69
1031 1059 2.662527 GGACGACGAAAACCGCCA 60.663 61.111 0.00 0.00 43.32 5.69
1096 1124 1.606668 GGTTCATTGTGCTGGACGAAA 59.393 47.619 0.00 0.00 0.00 3.46
1256 1286 3.817647 GACTAGCTTATCCCATGCTTTGG 59.182 47.826 0.00 0.00 46.00 3.28
1284 1314 1.516110 ATGTCTTGGAGAGGATGGGG 58.484 55.000 0.00 0.00 0.00 4.96
1300 1330 2.593026 TGGGGTTTGAAGACCATGAAC 58.407 47.619 0.00 0.00 41.65 3.18
1481 1511 1.341089 TGGTGATCCTACAGTCGAGCT 60.341 52.381 0.00 0.00 34.23 4.09
1493 1523 3.389983 ACAGTCGAGCTAGAGAGACCTAT 59.610 47.826 0.00 0.00 34.41 2.57
1773 1803 7.442364 CGAACTCCTCAACATTATGGTCAATAT 59.558 37.037 0.00 0.00 0.00 1.28
2050 2080 7.173722 TGTCCATACCGGGTTTCTAAAATAAA 58.826 34.615 4.31 0.00 34.36 1.40
2440 2472 8.792633 GGGTAAAATGAACATATATAGCAGCAA 58.207 33.333 0.00 0.00 0.00 3.91
2445 2477 6.525121 TGAACATATATAGCAGCAACGTTC 57.475 37.500 0.00 0.00 0.00 3.95
2536 2568 2.891593 AACCCCCAAAACCCCTAAAA 57.108 45.000 0.00 0.00 0.00 1.52
2582 2615 1.455959 TTTTGGTCCCGGTTGGTGG 60.456 57.895 0.00 0.00 34.77 4.61
2604 2637 3.182996 AACCGGGACCAAAGGCCT 61.183 61.111 6.32 0.00 0.00 5.19
2612 2646 0.687354 GACCAAAGGCCTCTGACTGA 59.313 55.000 7.95 0.00 0.00 3.41
2665 2699 5.750352 TTAGTCCCGGTTCTAGTTTGAAT 57.250 39.130 0.00 0.00 0.00 2.57
2667 2701 3.581332 AGTCCCGGTTCTAGTTTGAATCA 59.419 43.478 0.00 0.00 0.00 2.57
2681 2715 5.014123 AGTTTGAATCAGGACTAATGGGTGA 59.986 40.000 0.45 0.00 0.00 4.02
2754 2788 2.626743 CCTCACGAACCGGGACTATTAT 59.373 50.000 6.32 0.00 32.99 1.28
2776 2810 9.877178 ATTATGTGTTTTTCTACTAGTGAGAGG 57.123 33.333 5.39 0.00 0.00 3.69
2777 2811 5.539048 TGTGTTTTTCTACTAGTGAGAGGC 58.461 41.667 5.39 0.00 0.00 4.70
2778 2812 4.930405 GTGTTTTTCTACTAGTGAGAGGCC 59.070 45.833 5.39 0.00 0.00 5.19
2779 2813 4.591498 TGTTTTTCTACTAGTGAGAGGCCA 59.409 41.667 5.01 0.00 0.00 5.36
2780 2814 5.172205 GTTTTTCTACTAGTGAGAGGCCAG 58.828 45.833 5.01 0.00 0.00 4.85
2781 2815 2.738587 TCTACTAGTGAGAGGCCAGG 57.261 55.000 5.01 0.00 0.00 4.45
2782 2816 1.215673 TCTACTAGTGAGAGGCCAGGG 59.784 57.143 5.01 0.00 0.00 4.45
2783 2817 1.008403 TACTAGTGAGAGGCCAGGGT 58.992 55.000 5.01 0.00 0.00 4.34
2784 2818 0.117340 ACTAGTGAGAGGCCAGGGTT 59.883 55.000 5.01 0.00 0.00 4.11
2785 2819 1.361543 ACTAGTGAGAGGCCAGGGTTA 59.638 52.381 5.01 0.00 0.00 2.85
2786 2820 2.022918 ACTAGTGAGAGGCCAGGGTTAT 60.023 50.000 5.01 0.00 0.00 1.89
2787 2821 1.501582 AGTGAGAGGCCAGGGTTATC 58.498 55.000 5.01 0.00 0.00 1.75
2788 2822 0.470341 GTGAGAGGCCAGGGTTATCC 59.530 60.000 5.01 0.00 0.00 2.59
2790 2824 1.274416 TGAGAGGCCAGGGTTATCCTT 60.274 52.381 5.01 0.00 45.47 3.36
2791 2825 2.022428 TGAGAGGCCAGGGTTATCCTTA 60.022 50.000 5.01 0.00 45.47 2.69
2792 2826 3.046374 GAGAGGCCAGGGTTATCCTTAA 58.954 50.000 5.01 0.00 45.47 1.85
2793 2827 3.458487 GAGAGGCCAGGGTTATCCTTAAA 59.542 47.826 5.01 0.00 45.47 1.52
2794 2828 3.459969 AGAGGCCAGGGTTATCCTTAAAG 59.540 47.826 5.01 0.00 45.47 1.85
2795 2829 3.458487 GAGGCCAGGGTTATCCTTAAAGA 59.542 47.826 5.01 0.00 45.47 2.52
2796 2830 3.459969 AGGCCAGGGTTATCCTTAAAGAG 59.540 47.826 5.01 0.00 45.47 2.85
2797 2831 3.435169 GGCCAGGGTTATCCTTAAAGAGG 60.435 52.174 0.00 0.00 45.47 3.69
2798 2832 3.821748 CCAGGGTTATCCTTAAAGAGGC 58.178 50.000 0.00 0.00 45.47 4.70
2799 2833 3.435169 CCAGGGTTATCCTTAAAGAGGCC 60.435 52.174 0.00 0.00 45.47 5.19
2800 2834 2.784095 AGGGTTATCCTTAAAGAGGCCC 59.216 50.000 0.00 0.00 45.47 5.80
2801 2835 2.486727 GGGTTATCCTTAAAGAGGCCCG 60.487 54.545 0.00 0.00 45.87 6.13
2802 2836 2.486727 GGTTATCCTTAAAGAGGCCCGG 60.487 54.545 0.00 0.00 45.87 5.73
2803 2837 2.436911 GTTATCCTTAAAGAGGCCCGGA 59.563 50.000 0.73 0.00 45.87 5.14
2804 2838 1.821088 ATCCTTAAAGAGGCCCGGAT 58.179 50.000 0.73 0.00 45.87 4.18
2805 2839 0.837272 TCCTTAAAGAGGCCCGGATG 59.163 55.000 0.73 0.00 45.87 3.51
2806 2840 0.546598 CCTTAAAGAGGCCCGGATGT 59.453 55.000 0.73 0.00 39.09 3.06
2807 2841 1.064685 CCTTAAAGAGGCCCGGATGTT 60.065 52.381 0.73 0.00 39.09 2.71
2808 2842 2.620627 CCTTAAAGAGGCCCGGATGTTT 60.621 50.000 0.73 2.16 39.09 2.83
2809 2843 2.122783 TAAAGAGGCCCGGATGTTTG 57.877 50.000 0.73 0.00 0.00 2.93
2810 2844 0.404040 AAAGAGGCCCGGATGTTTGA 59.596 50.000 0.73 0.00 0.00 2.69
2811 2845 0.625849 AAGAGGCCCGGATGTTTGAT 59.374 50.000 0.73 0.00 0.00 2.57
2812 2846 1.507140 AGAGGCCCGGATGTTTGATA 58.493 50.000 0.73 0.00 0.00 2.15
2813 2847 2.057922 AGAGGCCCGGATGTTTGATAT 58.942 47.619 0.73 0.00 0.00 1.63
2814 2848 2.443255 AGAGGCCCGGATGTTTGATATT 59.557 45.455 0.73 0.00 0.00 1.28
2815 2849 3.117512 AGAGGCCCGGATGTTTGATATTT 60.118 43.478 0.73 0.00 0.00 1.40
2816 2850 3.636764 GAGGCCCGGATGTTTGATATTTT 59.363 43.478 0.73 0.00 0.00 1.82
2817 2851 4.030216 AGGCCCGGATGTTTGATATTTTT 58.970 39.130 0.73 0.00 0.00 1.94
2838 2872 6.793505 TTTTAAAAAGGAGGTTGCCTAACA 57.206 33.333 0.00 0.00 37.26 2.41
2839 2873 6.793505 TTTAAAAAGGAGGTTGCCTAACAA 57.206 33.333 0.00 0.00 37.26 2.83
2840 2874 6.987403 TTAAAAAGGAGGTTGCCTAACAAT 57.013 33.333 0.00 0.00 41.27 2.71
2841 2875 5.887214 AAAAAGGAGGTTGCCTAACAATT 57.113 34.783 0.00 0.00 41.27 2.32
2842 2876 5.887214 AAAAGGAGGTTGCCTAACAATTT 57.113 34.783 0.00 0.00 41.27 1.82
2843 2877 4.871933 AAGGAGGTTGCCTAACAATTTG 57.128 40.909 0.00 0.00 41.27 2.32
2844 2878 3.844640 AGGAGGTTGCCTAACAATTTGT 58.155 40.909 0.00 0.00 41.27 2.83
2845 2879 4.993028 AGGAGGTTGCCTAACAATTTGTA 58.007 39.130 1.76 0.00 41.27 2.41
2846 2880 5.580022 AGGAGGTTGCCTAACAATTTGTAT 58.420 37.500 1.76 0.00 41.27 2.29
2847 2881 6.727394 AGGAGGTTGCCTAACAATTTGTATA 58.273 36.000 1.76 0.00 41.27 1.47
2848 2882 7.354312 AGGAGGTTGCCTAACAATTTGTATAT 58.646 34.615 1.76 0.00 41.27 0.86
2849 2883 7.839200 AGGAGGTTGCCTAACAATTTGTATATT 59.161 33.333 1.76 0.00 41.27 1.28
2850 2884 8.474831 GGAGGTTGCCTAACAATTTGTATATTT 58.525 33.333 1.76 0.00 41.27 1.40
2851 2885 9.301153 GAGGTTGCCTAACAATTTGTATATTTG 57.699 33.333 1.76 0.00 41.27 2.32
2852 2886 9.030452 AGGTTGCCTAACAATTTGTATATTTGA 57.970 29.630 1.76 0.00 41.27 2.69
2853 2887 9.816354 GGTTGCCTAACAATTTGTATATTTGAT 57.184 29.630 1.76 0.00 41.27 2.57
2857 2891 9.463443 GCCTAACAATTTGTATATTTGATGACC 57.537 33.333 1.76 0.00 0.00 4.02
2858 2892 9.965824 CCTAACAATTTGTATATTTGATGACCC 57.034 33.333 1.76 0.00 0.00 4.46
2861 2895 8.593945 ACAATTTGTATATTTGATGACCCTGT 57.406 30.769 0.00 0.00 0.00 4.00
2862 2896 8.469200 ACAATTTGTATATTTGATGACCCTGTG 58.531 33.333 0.00 0.00 0.00 3.66
2863 2897 7.587037 ATTTGTATATTTGATGACCCTGTGG 57.413 36.000 0.00 0.00 37.80 4.17
2864 2898 5.966853 TGTATATTTGATGACCCTGTGGA 57.033 39.130 0.00 0.00 34.81 4.02
2865 2899 5.928976 TGTATATTTGATGACCCTGTGGAG 58.071 41.667 0.00 0.00 34.81 3.86
2866 2900 5.428457 TGTATATTTGATGACCCTGTGGAGT 59.572 40.000 0.00 0.00 34.81 3.85
2867 2901 2.859165 TTTGATGACCCTGTGGAGTC 57.141 50.000 0.00 0.00 34.81 3.36
2868 2902 2.030027 TTGATGACCCTGTGGAGTCT 57.970 50.000 0.00 0.00 34.02 3.24
2869 2903 2.030027 TGATGACCCTGTGGAGTCTT 57.970 50.000 0.00 0.00 34.02 3.01
2870 2904 1.625315 TGATGACCCTGTGGAGTCTTG 59.375 52.381 0.00 0.00 34.02 3.02
2871 2905 0.326264 ATGACCCTGTGGAGTCTTGC 59.674 55.000 0.00 0.00 34.02 4.01
2872 2906 0.764369 TGACCCTGTGGAGTCTTGCT 60.764 55.000 0.00 0.00 34.02 3.91
2873 2907 0.036858 GACCCTGTGGAGTCTTGCTC 60.037 60.000 0.00 0.00 43.39 4.26
2874 2908 0.472734 ACCCTGTGGAGTCTTGCTCT 60.473 55.000 0.00 0.00 43.62 4.09
2875 2909 0.689623 CCCTGTGGAGTCTTGCTCTT 59.310 55.000 0.00 0.00 43.62 2.85
2876 2910 1.072965 CCCTGTGGAGTCTTGCTCTTT 59.927 52.381 0.00 0.00 43.62 2.52
2877 2911 2.421619 CCTGTGGAGTCTTGCTCTTTC 58.578 52.381 0.00 0.00 43.62 2.62
2878 2912 2.421619 CTGTGGAGTCTTGCTCTTTCC 58.578 52.381 0.00 0.00 43.62 3.13
2879 2913 2.038295 CTGTGGAGTCTTGCTCTTTCCT 59.962 50.000 0.00 0.00 43.62 3.36
2880 2914 2.037772 TGTGGAGTCTTGCTCTTTCCTC 59.962 50.000 0.00 0.00 43.62 3.71
2881 2915 1.625818 TGGAGTCTTGCTCTTTCCTCC 59.374 52.381 0.00 0.00 43.62 4.30
2882 2916 1.625818 GGAGTCTTGCTCTTTCCTCCA 59.374 52.381 0.00 0.00 43.62 3.86
2883 2917 2.238395 GGAGTCTTGCTCTTTCCTCCAT 59.762 50.000 0.00 0.00 43.62 3.41
2884 2918 3.308046 GGAGTCTTGCTCTTTCCTCCATT 60.308 47.826 0.00 0.00 43.62 3.16
2885 2919 3.683802 AGTCTTGCTCTTTCCTCCATTG 58.316 45.455 0.00 0.00 0.00 2.82
2886 2920 2.751806 GTCTTGCTCTTTCCTCCATTGG 59.248 50.000 0.00 0.00 0.00 3.16
2887 2921 2.376518 TCTTGCTCTTTCCTCCATTGGT 59.623 45.455 1.86 0.00 0.00 3.67
2888 2922 2.496899 TGCTCTTTCCTCCATTGGTC 57.503 50.000 1.86 0.00 0.00 4.02
2889 2923 1.339055 TGCTCTTTCCTCCATTGGTCG 60.339 52.381 1.86 0.00 0.00 4.79
2890 2924 1.066143 GCTCTTTCCTCCATTGGTCGA 60.066 52.381 1.86 0.00 0.00 4.20
2891 2925 2.898705 CTCTTTCCTCCATTGGTCGAG 58.101 52.381 1.86 0.00 0.00 4.04
2892 2926 2.497675 CTCTTTCCTCCATTGGTCGAGA 59.502 50.000 1.86 0.71 0.00 4.04
2893 2927 2.233922 TCTTTCCTCCATTGGTCGAGAC 59.766 50.000 1.86 0.00 0.00 3.36
2894 2928 0.530744 TTCCTCCATTGGTCGAGACG 59.469 55.000 1.86 0.00 0.00 4.18
2895 2929 1.141881 CCTCCATTGGTCGAGACGG 59.858 63.158 1.86 0.00 0.00 4.79
2896 2930 1.320344 CCTCCATTGGTCGAGACGGA 61.320 60.000 1.86 0.00 0.00 4.69
2897 2931 0.179134 CTCCATTGGTCGAGACGGAC 60.179 60.000 1.86 0.00 36.18 4.79
2904 2938 3.104014 GTCGAGACGGACCAAAGTC 57.896 57.895 0.00 0.00 42.73 3.01
2906 2940 1.808945 GTCGAGACGGACCAAAGTCTA 59.191 52.381 0.97 0.00 46.52 2.59
2907 2941 2.227388 GTCGAGACGGACCAAAGTCTAA 59.773 50.000 0.97 0.00 46.52 2.10
2908 2942 2.227388 TCGAGACGGACCAAAGTCTAAC 59.773 50.000 0.97 0.00 46.52 2.34
2909 2943 2.228343 CGAGACGGACCAAAGTCTAACT 59.772 50.000 0.97 0.00 46.52 2.24
2910 2944 3.305199 CGAGACGGACCAAAGTCTAACTT 60.305 47.826 0.97 0.00 46.52 2.66
2911 2945 4.083110 CGAGACGGACCAAAGTCTAACTTA 60.083 45.833 0.97 0.00 46.52 2.24
2912 2946 5.563475 CGAGACGGACCAAAGTCTAACTTAA 60.563 44.000 0.97 0.00 46.52 1.85
2913 2947 6.356186 AGACGGACCAAAGTCTAACTTAAT 57.644 37.500 0.00 0.00 44.93 1.40
2914 2948 7.472334 AGACGGACCAAAGTCTAACTTAATA 57.528 36.000 0.00 0.00 44.93 0.98
2915 2949 7.545489 AGACGGACCAAAGTCTAACTTAATAG 58.455 38.462 0.00 0.00 44.93 1.73
2916 2950 6.104665 ACGGACCAAAGTCTAACTTAATAGC 58.895 40.000 0.00 0.00 43.05 2.97
2917 2951 6.070938 ACGGACCAAAGTCTAACTTAATAGCT 60.071 38.462 0.00 0.00 43.05 3.32
2918 2952 6.817140 CGGACCAAAGTCTAACTTAATAGCTT 59.183 38.462 0.00 0.00 43.05 3.74
2919 2953 7.201530 CGGACCAAAGTCTAACTTAATAGCTTG 60.202 40.741 0.00 0.00 43.05 4.01
2920 2954 7.606839 GGACCAAAGTCTAACTTAATAGCTTGT 59.393 37.037 0.00 0.00 43.05 3.16
2921 2955 8.919777 ACCAAAGTCTAACTTAATAGCTTGTT 57.080 30.769 0.00 0.00 37.47 2.83
2922 2956 9.000486 ACCAAAGTCTAACTTAATAGCTTGTTC 58.000 33.333 0.00 0.00 37.47 3.18
2923 2957 8.169268 CCAAAGTCTAACTTAATAGCTTGTTCG 58.831 37.037 0.00 0.00 37.47 3.95
2924 2958 8.922676 CAAAGTCTAACTTAATAGCTTGTTCGA 58.077 33.333 0.00 0.00 37.47 3.71
2925 2959 9.485206 AAAGTCTAACTTAATAGCTTGTTCGAA 57.515 29.630 0.00 0.00 37.47 3.71
2926 2960 9.485206 AAGTCTAACTTAATAGCTTGTTCGAAA 57.515 29.630 0.00 0.00 36.52 3.46
2927 2961 9.485206 AGTCTAACTTAATAGCTTGTTCGAAAA 57.515 29.630 0.00 0.00 0.00 2.29
2930 2964 9.490663 CTAACTTAATAGCTTGTTCGAAAATGG 57.509 33.333 0.00 0.00 0.00 3.16
2931 2965 7.681939 ACTTAATAGCTTGTTCGAAAATGGA 57.318 32.000 0.00 0.00 0.00 3.41
2932 2966 8.106247 ACTTAATAGCTTGTTCGAAAATGGAA 57.894 30.769 0.00 0.00 0.00 3.53
2933 2967 8.021396 ACTTAATAGCTTGTTCGAAAATGGAAC 58.979 33.333 0.00 0.00 43.13 3.62
2934 2968 6.575162 AATAGCTTGTTCGAAAATGGAACT 57.425 33.333 0.00 0.00 43.21 3.01
2935 2969 4.228912 AGCTTGTTCGAAAATGGAACTG 57.771 40.909 0.00 1.90 43.21 3.16
2936 2970 3.882888 AGCTTGTTCGAAAATGGAACTGA 59.117 39.130 0.00 0.00 43.21 3.41
2937 2971 4.023707 AGCTTGTTCGAAAATGGAACTGAG 60.024 41.667 0.00 5.84 43.21 3.35
2938 2972 4.024048 GCTTGTTCGAAAATGGAACTGAGA 60.024 41.667 0.00 0.00 43.21 3.27
2939 2973 5.335191 GCTTGTTCGAAAATGGAACTGAGAT 60.335 40.000 0.00 0.00 43.21 2.75
2940 2974 6.128282 GCTTGTTCGAAAATGGAACTGAGATA 60.128 38.462 0.00 0.00 43.21 1.98
2941 2975 7.573096 GCTTGTTCGAAAATGGAACTGAGATAA 60.573 37.037 0.00 0.00 43.21 1.75
2942 2976 7.364522 TGTTCGAAAATGGAACTGAGATAAG 57.635 36.000 0.00 0.00 43.21 1.73
2943 2977 7.158697 TGTTCGAAAATGGAACTGAGATAAGA 58.841 34.615 0.00 0.00 43.21 2.10
2944 2978 7.824289 TGTTCGAAAATGGAACTGAGATAAGAT 59.176 33.333 0.00 0.00 43.21 2.40
2945 2979 8.331742 GTTCGAAAATGGAACTGAGATAAGATC 58.668 37.037 0.00 0.00 40.41 2.75
2946 2980 7.555965 TCGAAAATGGAACTGAGATAAGATCA 58.444 34.615 0.00 0.00 0.00 2.92
2947 2981 8.040727 TCGAAAATGGAACTGAGATAAGATCAA 58.959 33.333 0.00 0.00 0.00 2.57
2948 2982 8.668353 CGAAAATGGAACTGAGATAAGATCAAA 58.332 33.333 0.00 0.00 0.00 2.69
2962 2996 9.003658 AGATAAGATCAAAATATTAAGTGCCGG 57.996 33.333 0.00 0.00 0.00 6.13
2963 2997 8.691661 ATAAGATCAAAATATTAAGTGCCGGT 57.308 30.769 1.90 0.00 0.00 5.28
2964 2998 6.619801 AGATCAAAATATTAAGTGCCGGTC 57.380 37.500 1.90 0.00 0.00 4.79
2965 2999 4.868450 TCAAAATATTAAGTGCCGGTCG 57.132 40.909 1.90 0.00 0.00 4.79
2966 3000 4.255301 TCAAAATATTAAGTGCCGGTCGT 58.745 39.130 1.90 0.00 0.00 4.34
2967 3001 4.696402 TCAAAATATTAAGTGCCGGTCGTT 59.304 37.500 1.90 0.00 0.00 3.85
2968 3002 5.181622 TCAAAATATTAAGTGCCGGTCGTTT 59.818 36.000 1.90 0.00 0.00 3.60
2969 3003 5.632244 AAATATTAAGTGCCGGTCGTTTT 57.368 34.783 1.90 0.00 0.00 2.43
2970 3004 2.981400 ATTAAGTGCCGGTCGTTTTG 57.019 45.000 1.90 0.00 0.00 2.44
2971 3005 1.666054 TTAAGTGCCGGTCGTTTTGT 58.334 45.000 1.90 0.00 0.00 2.83
2972 3006 0.938713 TAAGTGCCGGTCGTTTTGTG 59.061 50.000 1.90 0.00 0.00 3.33
2973 3007 2.331019 AAGTGCCGGTCGTTTTGTGC 62.331 55.000 1.90 0.00 0.00 4.57
2974 3008 2.515057 TGCCGGTCGTTTTGTGCT 60.515 55.556 1.90 0.00 0.00 4.40
2975 3009 1.227586 TGCCGGTCGTTTTGTGCTA 60.228 52.632 1.90 0.00 0.00 3.49
2976 3010 0.814410 TGCCGGTCGTTTTGTGCTAA 60.814 50.000 1.90 0.00 0.00 3.09
2977 3011 0.519961 GCCGGTCGTTTTGTGCTAAT 59.480 50.000 1.90 0.00 0.00 1.73
2978 3012 1.733360 GCCGGTCGTTTTGTGCTAATA 59.267 47.619 1.90 0.00 0.00 0.98
2979 3013 2.353579 GCCGGTCGTTTTGTGCTAATAT 59.646 45.455 1.90 0.00 0.00 1.28
2980 3014 3.181504 GCCGGTCGTTTTGTGCTAATATT 60.182 43.478 1.90 0.00 0.00 1.28
2981 3015 4.673320 GCCGGTCGTTTTGTGCTAATATTT 60.673 41.667 1.90 0.00 0.00 1.40
2982 3016 5.025826 CCGGTCGTTTTGTGCTAATATTTC 58.974 41.667 0.00 0.00 0.00 2.17
2983 3017 5.025826 CGGTCGTTTTGTGCTAATATTTCC 58.974 41.667 0.00 0.00 0.00 3.13
2984 3018 5.163794 CGGTCGTTTTGTGCTAATATTTCCT 60.164 40.000 0.00 0.00 0.00 3.36
2985 3019 6.036300 CGGTCGTTTTGTGCTAATATTTCCTA 59.964 38.462 0.00 0.00 0.00 2.94
2986 3020 7.407337 GGTCGTTTTGTGCTAATATTTCCTAG 58.593 38.462 0.00 0.00 0.00 3.02
2987 3021 7.279313 GGTCGTTTTGTGCTAATATTTCCTAGA 59.721 37.037 0.00 0.00 0.00 2.43
2988 3022 8.827677 GTCGTTTTGTGCTAATATTTCCTAGAT 58.172 33.333 0.00 0.00 0.00 1.98
2989 3023 8.826710 TCGTTTTGTGCTAATATTTCCTAGATG 58.173 33.333 0.00 0.00 0.00 2.90
2990 3024 7.587757 CGTTTTGTGCTAATATTTCCTAGATGC 59.412 37.037 0.00 0.00 0.00 3.91
2991 3025 7.510549 TTTGTGCTAATATTTCCTAGATGCC 57.489 36.000 0.00 0.00 0.00 4.40
2992 3026 6.186420 TGTGCTAATATTTCCTAGATGCCA 57.814 37.500 0.00 0.00 0.00 4.92
2993 3027 6.233434 TGTGCTAATATTTCCTAGATGCCAG 58.767 40.000 0.00 0.00 0.00 4.85
2994 3028 5.123027 GTGCTAATATTTCCTAGATGCCAGC 59.877 44.000 0.00 0.00 0.00 4.85
2995 3029 4.331168 GCTAATATTTCCTAGATGCCAGCG 59.669 45.833 0.00 0.00 0.00 5.18
2996 3030 2.169832 TATTTCCTAGATGCCAGCGC 57.830 50.000 0.00 0.00 0.00 5.92
3005 3039 2.348620 TGCCAGCGCATCTCACTT 59.651 55.556 11.47 0.00 41.12 3.16
3006 3040 1.302752 TGCCAGCGCATCTCACTTT 60.303 52.632 11.47 0.00 41.12 2.66
3007 3041 0.036483 TGCCAGCGCATCTCACTTTA 60.036 50.000 11.47 0.00 41.12 1.85
3008 3042 1.303309 GCCAGCGCATCTCACTTTAT 58.697 50.000 11.47 0.00 34.03 1.40
3009 3043 1.672881 GCCAGCGCATCTCACTTTATT 59.327 47.619 11.47 0.00 34.03 1.40
3010 3044 2.098117 GCCAGCGCATCTCACTTTATTT 59.902 45.455 11.47 0.00 34.03 1.40
3011 3045 3.312421 GCCAGCGCATCTCACTTTATTTA 59.688 43.478 11.47 0.00 34.03 1.40
3012 3046 4.786609 GCCAGCGCATCTCACTTTATTTAC 60.787 45.833 11.47 0.00 34.03 2.01
3013 3047 4.332543 CCAGCGCATCTCACTTTATTTACA 59.667 41.667 11.47 0.00 0.00 2.41
3014 3048 5.163764 CCAGCGCATCTCACTTTATTTACAA 60.164 40.000 11.47 0.00 0.00 2.41
3015 3049 6.314018 CAGCGCATCTCACTTTATTTACAAA 58.686 36.000 11.47 0.00 0.00 2.83
3016 3050 6.801377 CAGCGCATCTCACTTTATTTACAAAA 59.199 34.615 11.47 0.00 0.00 2.44
3017 3051 7.325821 CAGCGCATCTCACTTTATTTACAAAAA 59.674 33.333 11.47 0.00 0.00 1.94
3018 3052 7.326063 AGCGCATCTCACTTTATTTACAAAAAC 59.674 33.333 11.47 0.00 0.00 2.43
3019 3053 7.410407 GCGCATCTCACTTTATTTACAAAAACC 60.410 37.037 0.30 0.00 0.00 3.27
3020 3054 7.593273 CGCATCTCACTTTATTTACAAAAACCA 59.407 33.333 0.00 0.00 0.00 3.67
3021 3055 9.255304 GCATCTCACTTTATTTACAAAAACCAA 57.745 29.630 0.00 0.00 0.00 3.67
3033 3067 8.956617 TTTACAAAAACCAAAACAAATTGCTC 57.043 26.923 0.00 0.00 0.00 4.26
3034 3068 6.816134 ACAAAAACCAAAACAAATTGCTCT 57.184 29.167 0.00 0.00 0.00 4.09
3035 3069 7.213216 ACAAAAACCAAAACAAATTGCTCTT 57.787 28.000 0.00 0.00 0.00 2.85
3036 3070 7.656412 ACAAAAACCAAAACAAATTGCTCTTT 58.344 26.923 0.00 0.00 0.00 2.52
3037 3071 8.140628 ACAAAAACCAAAACAAATTGCTCTTTT 58.859 25.926 0.00 0.00 0.00 2.27
3038 3072 8.976471 CAAAAACCAAAACAAATTGCTCTTTTT 58.024 25.926 0.00 0.00 0.00 1.94
3059 3093 7.712264 TTTTTCTGTATGGAGCAATTTGTTG 57.288 32.000 0.00 0.00 0.00 3.33
3060 3094 6.403866 TTTCTGTATGGAGCAATTTGTTGT 57.596 33.333 0.00 0.00 0.00 3.32
3061 3095 6.403866 TTCTGTATGGAGCAATTTGTTGTT 57.596 33.333 0.00 0.00 0.00 2.83
3062 3096 6.403866 TCTGTATGGAGCAATTTGTTGTTT 57.596 33.333 0.00 0.00 0.00 2.83
3063 3097 6.446318 TCTGTATGGAGCAATTTGTTGTTTC 58.554 36.000 0.00 0.00 0.00 2.78
3064 3098 6.040278 TCTGTATGGAGCAATTTGTTGTTTCA 59.960 34.615 0.00 0.00 0.00 2.69
3065 3099 6.577103 TGTATGGAGCAATTTGTTGTTTCAA 58.423 32.000 0.00 0.00 0.00 2.69
3066 3100 7.215789 TGTATGGAGCAATTTGTTGTTTCAAT 58.784 30.769 0.00 0.00 0.00 2.57
3067 3101 7.714377 TGTATGGAGCAATTTGTTGTTTCAATT 59.286 29.630 0.00 0.00 0.00 2.32
3068 3102 6.360844 TGGAGCAATTTGTTGTTTCAATTG 57.639 33.333 0.00 0.00 0.00 2.32
3069 3103 5.879223 TGGAGCAATTTGTTGTTTCAATTGT 59.121 32.000 5.13 0.00 0.00 2.71
3070 3104 6.036953 TGGAGCAATTTGTTGTTTCAATTGTC 59.963 34.615 5.13 0.00 0.00 3.18
3071 3105 6.258507 GGAGCAATTTGTTGTTTCAATTGTCT 59.741 34.615 5.13 4.07 0.00 3.41
3072 3106 7.007313 AGCAATTTGTTGTTTCAATTGTCTG 57.993 32.000 5.13 0.00 0.00 3.51
3073 3107 6.594937 AGCAATTTGTTGTTTCAATTGTCTGT 59.405 30.769 5.13 0.00 0.00 3.41
3074 3108 7.763528 AGCAATTTGTTGTTTCAATTGTCTGTA 59.236 29.630 5.13 0.00 0.00 2.74
3075 3109 7.845622 GCAATTTGTTGTTTCAATTGTCTGTAC 59.154 33.333 5.13 1.19 0.00 2.90
3076 3110 8.867935 CAATTTGTTGTTTCAATTGTCTGTACA 58.132 29.630 5.13 0.00 0.00 2.90
3090 3124 7.925043 TTGTCTGTACAAAGTAGGAAAACAA 57.075 32.000 0.00 0.00 42.60 2.83
3091 3125 7.548196 TGTCTGTACAAAGTAGGAAAACAAG 57.452 36.000 0.00 0.00 30.91 3.16
3092 3126 6.037830 TGTCTGTACAAAGTAGGAAAACAAGC 59.962 38.462 0.00 0.00 30.91 4.01
3093 3127 6.037830 GTCTGTACAAAGTAGGAAAACAAGCA 59.962 38.462 0.00 0.00 0.00 3.91
3094 3128 6.260050 TCTGTACAAAGTAGGAAAACAAGCAG 59.740 38.462 0.00 0.00 0.00 4.24
3095 3129 6.116806 TGTACAAAGTAGGAAAACAAGCAGA 58.883 36.000 0.00 0.00 0.00 4.26
3096 3130 6.600032 TGTACAAAGTAGGAAAACAAGCAGAA 59.400 34.615 0.00 0.00 0.00 3.02
3097 3131 5.891451 ACAAAGTAGGAAAACAAGCAGAAC 58.109 37.500 0.00 0.00 0.00 3.01
3098 3132 5.417580 ACAAAGTAGGAAAACAAGCAGAACA 59.582 36.000 0.00 0.00 0.00 3.18
3099 3133 5.500645 AAGTAGGAAAACAAGCAGAACAC 57.499 39.130 0.00 0.00 0.00 3.32
3100 3134 3.560068 AGTAGGAAAACAAGCAGAACACG 59.440 43.478 0.00 0.00 0.00 4.49
3101 3135 1.065551 AGGAAAACAAGCAGAACACGC 59.934 47.619 0.00 0.00 0.00 5.34
3102 3136 1.065551 GGAAAACAAGCAGAACACGCT 59.934 47.619 0.00 0.00 42.98 5.07
3104 3138 2.475200 AAACAAGCAGAACACGCTTC 57.525 45.000 0.00 0.00 46.61 3.86
3105 3139 1.668419 AACAAGCAGAACACGCTTCT 58.332 45.000 0.00 0.00 46.61 2.85
3106 3140 1.668419 ACAAGCAGAACACGCTTCTT 58.332 45.000 0.00 0.00 46.61 2.52
3107 3141 1.599542 ACAAGCAGAACACGCTTCTTC 59.400 47.619 0.00 0.00 46.61 2.87
3108 3142 0.861837 AAGCAGAACACGCTTCTTCG 59.138 50.000 0.00 0.00 46.61 3.79
3109 3143 0.249489 AGCAGAACACGCTTCTTCGT 60.249 50.000 0.00 0.00 44.35 3.85
3110 3144 0.582005 GCAGAACACGCTTCTTCGTT 59.418 50.000 0.00 0.00 41.21 3.85
3111 3145 1.790623 GCAGAACACGCTTCTTCGTTA 59.209 47.619 0.00 0.00 41.21 3.18
3112 3146 2.220133 GCAGAACACGCTTCTTCGTTAA 59.780 45.455 0.00 0.00 41.21 2.01
3113 3147 3.120649 GCAGAACACGCTTCTTCGTTAAT 60.121 43.478 0.00 0.00 41.21 1.40
3114 3148 4.610680 GCAGAACACGCTTCTTCGTTAATT 60.611 41.667 0.00 0.00 41.21 1.40
3115 3149 5.440685 CAGAACACGCTTCTTCGTTAATTT 58.559 37.500 0.00 0.00 41.21 1.82
3116 3150 5.336990 CAGAACACGCTTCTTCGTTAATTTG 59.663 40.000 0.00 0.00 41.21 2.32
3117 3151 3.551551 ACACGCTTCTTCGTTAATTTGC 58.448 40.909 0.00 0.00 41.21 3.68
3118 3152 3.250040 ACACGCTTCTTCGTTAATTTGCT 59.750 39.130 0.00 0.00 41.21 3.91
3119 3153 4.449743 ACACGCTTCTTCGTTAATTTGCTA 59.550 37.500 0.00 0.00 41.21 3.49
3120 3154 5.049954 ACACGCTTCTTCGTTAATTTGCTAA 60.050 36.000 0.00 0.00 41.21 3.09
3121 3155 5.849081 CACGCTTCTTCGTTAATTTGCTAAA 59.151 36.000 0.00 0.00 41.21 1.85
3122 3156 6.523201 CACGCTTCTTCGTTAATTTGCTAAAT 59.477 34.615 0.00 0.00 41.21 1.40
3123 3157 7.690637 CACGCTTCTTCGTTAATTTGCTAAATA 59.309 33.333 0.00 0.00 41.21 1.40
3124 3158 8.231837 ACGCTTCTTCGTTAATTTGCTAAATAA 58.768 29.630 0.00 0.00 40.07 1.40
3125 3159 9.057365 CGCTTCTTCGTTAATTTGCTAAATAAA 57.943 29.630 0.00 0.00 0.00 1.40
3130 3164 9.834628 CTTCGTTAATTTGCTAAATAAAGACCA 57.165 29.630 4.44 0.00 0.00 4.02
3131 3165 9.615295 TTCGTTAATTTGCTAAATAAAGACCAC 57.385 29.630 4.44 0.00 0.00 4.16
3132 3166 8.238631 TCGTTAATTTGCTAAATAAAGACCACC 58.761 33.333 1.55 0.00 0.00 4.61
3133 3167 7.486870 CGTTAATTTGCTAAATAAAGACCACCC 59.513 37.037 0.00 0.00 0.00 4.61
3134 3168 5.576447 ATTTGCTAAATAAAGACCACCCG 57.424 39.130 0.00 0.00 0.00 5.28
3135 3169 2.993937 TGCTAAATAAAGACCACCCGG 58.006 47.619 0.00 0.00 38.77 5.73
3136 3170 2.294979 GCTAAATAAAGACCACCCGGG 58.705 52.381 22.25 22.25 44.81 5.73
3146 3180 4.033776 CACCCGGGTGGACAGCAT 62.034 66.667 41.16 7.25 42.00 3.79
3147 3181 3.256960 ACCCGGGTGGACAGCATT 61.257 61.111 29.69 0.00 37.49 3.56
3148 3182 2.751436 CCCGGGTGGACAGCATTG 60.751 66.667 14.18 0.00 37.49 2.82
3149 3183 2.034066 CCGGGTGGACAGCATTGT 59.966 61.111 0.00 0.00 41.18 2.71
3150 3184 2.334946 CCGGGTGGACAGCATTGTG 61.335 63.158 0.00 0.00 37.76 3.33
3151 3185 2.964978 GGGTGGACAGCATTGTGC 59.035 61.111 3.77 0.00 44.99 4.57
3152 3186 2.639327 GGGTGGACAGCATTGTGCC 61.639 63.158 3.77 0.00 46.52 5.01
3153 3187 1.604593 GGTGGACAGCATTGTGCCT 60.605 57.895 0.00 0.00 46.52 4.75
3154 3188 1.589716 GGTGGACAGCATTGTGCCTC 61.590 60.000 0.00 0.00 46.52 4.70
3155 3189 0.607489 GTGGACAGCATTGTGCCTCT 60.607 55.000 0.00 0.00 46.52 3.69
3156 3190 0.111061 TGGACAGCATTGTGCCTCTT 59.889 50.000 0.00 0.00 46.52 2.85
3157 3191 1.251251 GGACAGCATTGTGCCTCTTT 58.749 50.000 0.00 0.00 46.52 2.52
3158 3192 2.224744 TGGACAGCATTGTGCCTCTTTA 60.225 45.455 0.00 0.00 46.52 1.85
3159 3193 2.819608 GGACAGCATTGTGCCTCTTTAA 59.180 45.455 0.00 0.00 46.52 1.52
3160 3194 3.255642 GGACAGCATTGTGCCTCTTTAAA 59.744 43.478 0.00 0.00 46.52 1.52
3161 3195 4.082026 GGACAGCATTGTGCCTCTTTAAAT 60.082 41.667 0.00 0.00 46.52 1.40
3162 3196 5.473039 GACAGCATTGTGCCTCTTTAAATT 58.527 37.500 0.00 0.00 46.52 1.82
3163 3197 5.473039 ACAGCATTGTGCCTCTTTAAATTC 58.527 37.500 0.00 0.00 46.52 2.17
3164 3198 5.010922 ACAGCATTGTGCCTCTTTAAATTCA 59.989 36.000 0.00 0.00 46.52 2.57
3165 3199 6.103997 CAGCATTGTGCCTCTTTAAATTCAT 58.896 36.000 0.00 0.00 46.52 2.57
3166 3200 7.093814 ACAGCATTGTGCCTCTTTAAATTCATA 60.094 33.333 0.00 0.00 46.52 2.15
3167 3201 7.924412 CAGCATTGTGCCTCTTTAAATTCATAT 59.076 33.333 0.00 0.00 46.52 1.78
3168 3202 9.135189 AGCATTGTGCCTCTTTAAATTCATATA 57.865 29.630 0.00 0.00 46.52 0.86
3169 3203 9.748708 GCATTGTGCCTCTTTAAATTCATATAA 57.251 29.630 0.00 0.00 37.42 0.98
3173 3207 9.679661 TGTGCCTCTTTAAATTCATATAAGTCA 57.320 29.630 0.00 0.00 0.00 3.41
3184 3218 9.807649 AAATTCATATAAGTCAACAATCAAGGC 57.192 29.630 0.00 0.00 0.00 4.35
3185 3219 7.936496 TTCATATAAGTCAACAATCAAGGCA 57.064 32.000 0.00 0.00 0.00 4.75
3186 3220 8.523915 TTCATATAAGTCAACAATCAAGGCAT 57.476 30.769 0.00 0.00 0.00 4.40
3187 3221 9.625747 TTCATATAAGTCAACAATCAAGGCATA 57.374 29.630 0.00 0.00 0.00 3.14
3188 3222 9.625747 TCATATAAGTCAACAATCAAGGCATAA 57.374 29.630 0.00 0.00 0.00 1.90
3194 3228 9.851686 AAGTCAACAATCAAGGCATAATATAGA 57.148 29.630 0.00 0.00 0.00 1.98
3200 3234 9.797642 ACAATCAAGGCATAATATAGATGAACA 57.202 29.630 2.43 0.00 0.00 3.18
3203 3237 9.887629 ATCAAGGCATAATATAGATGAACAGAG 57.112 33.333 2.43 0.00 0.00 3.35
3204 3238 9.093458 TCAAGGCATAATATAGATGAACAGAGA 57.907 33.333 2.43 0.00 0.00 3.10
3205 3239 9.716531 CAAGGCATAATATAGATGAACAGAGAA 57.283 33.333 2.43 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
328 356 0.106868 CATGGCCCTGATCAAGCAGA 60.107 55.000 16.78 5.56 38.14 4.26
542 570 2.093890 CTCCAATGCAACCATGTAGCA 58.906 47.619 6.45 6.45 43.14 3.49
580 608 1.004745 GATCCCTGAAGAACCTGCCAA 59.995 52.381 0.00 0.00 0.00 4.52
624 652 4.105697 TGGACACCCAAAGATAAGGAACTT 59.894 41.667 0.00 0.00 46.25 2.66
625 653 3.655777 TGGACACCCAAAGATAAGGAACT 59.344 43.478 0.00 0.00 39.65 3.01
1031 1059 4.640690 ACCAGTCGCACTCCCCCT 62.641 66.667 0.00 0.00 0.00 4.79
1096 1124 2.030946 GCTTAATGCTGAAGCGACGATT 59.969 45.455 0.00 0.00 45.83 3.34
1215 1245 7.337942 AGCTAGTCGAATTGGAAAAGATGAAAT 59.662 33.333 0.00 0.00 0.00 2.17
1284 1314 3.966218 CGAAACGTTCATGGTCTTCAAAC 59.034 43.478 0.00 0.00 0.00 2.93
1331 1361 6.425735 ACATGAAAATCCACACCATGATAGA 58.574 36.000 0.00 0.00 38.29 1.98
1333 1363 8.586879 TTTACATGAAAATCCACACCATGATA 57.413 30.769 0.00 0.00 38.29 2.15
1474 1504 3.997762 TCATAGGTCTCTCTAGCTCGAC 58.002 50.000 0.00 0.00 0.00 4.20
1481 1511 6.366340 AGGACGAAAATCATAGGTCTCTCTA 58.634 40.000 0.00 0.00 0.00 2.43
2204 2235 2.307980 AGGACCTAAACACCCTTAAGGC 59.692 50.000 16.70 0.00 40.58 4.35
2440 2472 3.389925 TCATCCTTGGTTTACGAACGT 57.610 42.857 5.03 5.03 36.61 3.99
2445 2477 9.197694 CTCTTATATCTTCATCCTTGGTTTACG 57.802 37.037 0.00 0.00 0.00 3.18
2582 2615 2.519780 TTTGGTCCCGGTTGGTGC 60.520 61.111 0.00 0.00 34.77 5.01
2604 2637 4.121669 GCGCCGAGCTCAGTCAGA 62.122 66.667 15.40 0.00 44.04 3.27
2665 2699 2.915869 ACCTTCACCCATTAGTCCTGA 58.084 47.619 0.00 0.00 0.00 3.86
2667 2701 6.210522 ACTAATACCTTCACCCATTAGTCCT 58.789 40.000 0.00 0.00 39.01 3.85
2681 2715 4.783560 AATGGGCCGTTACTAATACCTT 57.216 40.909 9.83 0.00 0.00 3.50
2754 2788 5.510861 GGCCTCTCACTAGTAGAAAAACACA 60.511 44.000 3.59 0.00 0.00 3.72
2788 2822 2.420058 AACATCCGGGCCTCTTTAAG 57.580 50.000 0.84 0.00 0.00 1.85
2789 2823 2.040545 TCAAACATCCGGGCCTCTTTAA 59.959 45.455 0.84 0.00 0.00 1.52
2790 2824 1.631388 TCAAACATCCGGGCCTCTTTA 59.369 47.619 0.84 0.00 0.00 1.85
2791 2825 0.404040 TCAAACATCCGGGCCTCTTT 59.596 50.000 0.84 0.00 0.00 2.52
2792 2826 0.625849 ATCAAACATCCGGGCCTCTT 59.374 50.000 0.84 0.00 0.00 2.85
2793 2827 1.507140 TATCAAACATCCGGGCCTCT 58.493 50.000 0.84 0.00 0.00 3.69
2794 2828 2.568623 ATATCAAACATCCGGGCCTC 57.431 50.000 0.84 0.00 0.00 4.70
2795 2829 3.312736 AAATATCAAACATCCGGGCCT 57.687 42.857 0.84 0.00 0.00 5.19
2796 2830 4.400529 AAAAATATCAAACATCCGGGCC 57.599 40.909 0.00 0.00 0.00 5.80
2814 2848 7.184067 TGTTAGGCAACCTCCTTTTTAAAAA 57.816 32.000 12.62 12.62 37.66 1.94
2815 2849 6.793505 TGTTAGGCAACCTCCTTTTTAAAA 57.206 33.333 0.00 0.00 37.66 1.52
2816 2850 6.793505 TTGTTAGGCAACCTCCTTTTTAAA 57.206 33.333 0.00 0.00 37.66 1.52
2817 2851 6.987403 ATTGTTAGGCAACCTCCTTTTTAA 57.013 33.333 0.00 0.00 40.28 1.52
2818 2852 6.987403 AATTGTTAGGCAACCTCCTTTTTA 57.013 33.333 0.00 0.00 40.28 1.52
2819 2853 5.887214 AATTGTTAGGCAACCTCCTTTTT 57.113 34.783 0.00 0.00 40.28 1.94
2820 2854 5.130311 ACAAATTGTTAGGCAACCTCCTTTT 59.870 36.000 0.00 0.00 40.28 2.27
2821 2855 4.653801 ACAAATTGTTAGGCAACCTCCTTT 59.346 37.500 0.00 0.00 40.28 3.11
2822 2856 4.223144 ACAAATTGTTAGGCAACCTCCTT 58.777 39.130 0.00 0.00 40.28 3.36
2823 2857 3.844640 ACAAATTGTTAGGCAACCTCCT 58.155 40.909 0.00 0.00 40.28 3.69
2824 2858 5.914898 ATACAAATTGTTAGGCAACCTCC 57.085 39.130 3.17 0.00 40.28 4.30
2825 2859 9.301153 CAAATATACAAATTGTTAGGCAACCTC 57.699 33.333 3.17 0.00 40.28 3.85
2826 2860 9.030452 TCAAATATACAAATTGTTAGGCAACCT 57.970 29.630 3.17 0.00 40.28 3.50
2827 2861 9.816354 ATCAAATATACAAATTGTTAGGCAACC 57.184 29.630 3.17 0.00 40.28 3.77
2831 2865 9.463443 GGTCATCAAATATACAAATTGTTAGGC 57.537 33.333 3.17 0.00 0.00 3.93
2832 2866 9.965824 GGGTCATCAAATATACAAATTGTTAGG 57.034 33.333 3.17 0.00 0.00 2.69
2835 2869 9.034800 ACAGGGTCATCAAATATACAAATTGTT 57.965 29.630 3.17 0.00 0.00 2.83
2836 2870 8.469200 CACAGGGTCATCAAATATACAAATTGT 58.531 33.333 3.43 3.43 0.00 2.71
2837 2871 7.922278 CCACAGGGTCATCAAATATACAAATTG 59.078 37.037 0.00 0.00 0.00 2.32
2838 2872 7.838696 TCCACAGGGTCATCAAATATACAAATT 59.161 33.333 0.00 0.00 34.93 1.82
2839 2873 7.353525 TCCACAGGGTCATCAAATATACAAAT 58.646 34.615 0.00 0.00 34.93 2.32
2840 2874 6.726379 TCCACAGGGTCATCAAATATACAAA 58.274 36.000 0.00 0.00 34.93 2.83
2841 2875 6.069673 ACTCCACAGGGTCATCAAATATACAA 60.070 38.462 0.00 0.00 34.93 2.41
2842 2876 5.428457 ACTCCACAGGGTCATCAAATATACA 59.572 40.000 0.00 0.00 34.93 2.29
2843 2877 5.930135 ACTCCACAGGGTCATCAAATATAC 58.070 41.667 0.00 0.00 34.93 1.47
2844 2878 5.905331 AGACTCCACAGGGTCATCAAATATA 59.095 40.000 0.00 0.00 35.18 0.86
2845 2879 4.723789 AGACTCCACAGGGTCATCAAATAT 59.276 41.667 0.00 0.00 35.18 1.28
2846 2880 4.104086 AGACTCCACAGGGTCATCAAATA 58.896 43.478 0.00 0.00 35.18 1.40
2847 2881 2.915604 AGACTCCACAGGGTCATCAAAT 59.084 45.455 0.00 0.00 35.18 2.32
2848 2882 2.338809 AGACTCCACAGGGTCATCAAA 58.661 47.619 0.00 0.00 35.18 2.69
2849 2883 2.030027 AGACTCCACAGGGTCATCAA 57.970 50.000 0.00 0.00 35.18 2.57
2850 2884 1.625315 CAAGACTCCACAGGGTCATCA 59.375 52.381 0.00 0.00 35.18 3.07
2851 2885 1.677217 GCAAGACTCCACAGGGTCATC 60.677 57.143 0.00 0.00 35.18 2.92
2852 2886 0.326264 GCAAGACTCCACAGGGTCAT 59.674 55.000 0.00 0.00 35.18 3.06
2853 2887 0.764369 AGCAAGACTCCACAGGGTCA 60.764 55.000 0.00 0.00 35.18 4.02
2854 2888 0.036858 GAGCAAGACTCCACAGGGTC 60.037 60.000 0.00 0.00 39.75 4.46
2855 2889 2.062070 GAGCAAGACTCCACAGGGT 58.938 57.895 0.00 0.00 39.75 4.34
2860 2894 5.134448 TGGAGGAAAGAGCAAGACTCCAC 62.134 52.174 7.10 0.00 46.79 4.02
2863 2897 3.625649 ATGGAGGAAAGAGCAAGACTC 57.374 47.619 0.00 0.00 46.66 3.36
2864 2898 3.560882 CCAATGGAGGAAAGAGCAAGACT 60.561 47.826 0.00 0.00 0.00 3.24
2865 2899 2.751806 CCAATGGAGGAAAGAGCAAGAC 59.248 50.000 0.00 0.00 0.00 3.01
2866 2900 2.376518 ACCAATGGAGGAAAGAGCAAGA 59.623 45.455 6.16 0.00 0.00 3.02
2867 2901 2.751806 GACCAATGGAGGAAAGAGCAAG 59.248 50.000 6.16 0.00 0.00 4.01
2868 2902 2.795329 GACCAATGGAGGAAAGAGCAA 58.205 47.619 6.16 0.00 0.00 3.91
2869 2903 1.339055 CGACCAATGGAGGAAAGAGCA 60.339 52.381 6.16 0.00 0.00 4.26
2870 2904 1.066143 TCGACCAATGGAGGAAAGAGC 60.066 52.381 6.16 0.00 0.00 4.09
2871 2905 2.497675 TCTCGACCAATGGAGGAAAGAG 59.502 50.000 6.16 5.32 31.82 2.85
2872 2906 2.233922 GTCTCGACCAATGGAGGAAAGA 59.766 50.000 6.16 0.00 31.82 2.52
2873 2907 2.622436 GTCTCGACCAATGGAGGAAAG 58.378 52.381 6.16 0.00 31.82 2.62
2874 2908 1.067142 CGTCTCGACCAATGGAGGAAA 60.067 52.381 6.16 0.00 31.82 3.13
2875 2909 0.530744 CGTCTCGACCAATGGAGGAA 59.469 55.000 6.16 0.00 31.82 3.36
2876 2910 1.320344 CCGTCTCGACCAATGGAGGA 61.320 60.000 6.16 1.24 31.82 3.71
2877 2911 1.141881 CCGTCTCGACCAATGGAGG 59.858 63.158 6.16 0.00 31.82 4.30
2878 2912 0.179134 GTCCGTCTCGACCAATGGAG 60.179 60.000 6.16 0.00 32.16 3.86
2879 2913 1.888018 GTCCGTCTCGACCAATGGA 59.112 57.895 6.16 0.00 0.00 3.41
2880 2914 4.496670 GTCCGTCTCGACCAATGG 57.503 61.111 0.00 0.00 0.00 3.16
2886 2920 0.597072 AGACTTTGGTCCGTCTCGAC 59.403 55.000 0.00 0.00 43.05 4.20
2887 2921 2.189594 TAGACTTTGGTCCGTCTCGA 57.810 50.000 1.55 0.00 43.05 4.04
2888 2922 2.228343 AGTTAGACTTTGGTCCGTCTCG 59.772 50.000 1.55 0.00 43.05 4.04
2889 2923 3.938289 AGTTAGACTTTGGTCCGTCTC 57.062 47.619 1.55 0.00 43.05 3.36
2890 2924 5.796424 TTAAGTTAGACTTTGGTCCGTCT 57.204 39.130 0.00 3.72 43.05 4.18
2891 2925 6.255237 GCTATTAAGTTAGACTTTGGTCCGTC 59.745 42.308 0.00 0.00 43.05 4.79
2892 2926 6.070938 AGCTATTAAGTTAGACTTTGGTCCGT 60.071 38.462 0.00 0.00 43.05 4.69
2893 2927 6.338937 AGCTATTAAGTTAGACTTTGGTCCG 58.661 40.000 0.00 0.00 43.05 4.79
2894 2928 7.606839 ACAAGCTATTAAGTTAGACTTTGGTCC 59.393 37.037 0.00 0.00 43.05 4.46
2895 2929 8.549338 ACAAGCTATTAAGTTAGACTTTGGTC 57.451 34.615 0.00 0.00 39.51 4.02
2896 2930 8.919777 AACAAGCTATTAAGTTAGACTTTGGT 57.080 30.769 0.00 0.00 39.51 3.67
2897 2931 8.169268 CGAACAAGCTATTAAGTTAGACTTTGG 58.831 37.037 0.00 0.00 39.51 3.28
2898 2932 8.922676 TCGAACAAGCTATTAAGTTAGACTTTG 58.077 33.333 0.00 0.00 39.51 2.77
2899 2933 9.485206 TTCGAACAAGCTATTAAGTTAGACTTT 57.515 29.630 0.00 0.00 39.51 2.66
2900 2934 9.485206 TTTCGAACAAGCTATTAAGTTAGACTT 57.515 29.630 0.00 0.00 41.97 3.01
2901 2935 9.485206 TTTTCGAACAAGCTATTAAGTTAGACT 57.515 29.630 0.00 0.00 0.00 3.24
2904 2938 9.490663 CCATTTTCGAACAAGCTATTAAGTTAG 57.509 33.333 0.00 0.00 0.00 2.34
2905 2939 9.221933 TCCATTTTCGAACAAGCTATTAAGTTA 57.778 29.630 0.00 0.00 0.00 2.24
2906 2940 8.106247 TCCATTTTCGAACAAGCTATTAAGTT 57.894 30.769 0.00 0.00 0.00 2.66
2907 2941 7.681939 TCCATTTTCGAACAAGCTATTAAGT 57.318 32.000 0.00 0.00 0.00 2.24
2908 2942 8.237267 AGTTCCATTTTCGAACAAGCTATTAAG 58.763 33.333 0.00 0.00 41.72 1.85
2909 2943 8.020819 CAGTTCCATTTTCGAACAAGCTATTAA 58.979 33.333 0.00 0.00 41.72 1.40
2910 2944 7.389330 TCAGTTCCATTTTCGAACAAGCTATTA 59.611 33.333 0.00 0.00 41.72 0.98
2911 2945 6.206634 TCAGTTCCATTTTCGAACAAGCTATT 59.793 34.615 0.00 0.00 41.72 1.73
2912 2946 5.705441 TCAGTTCCATTTTCGAACAAGCTAT 59.295 36.000 0.00 0.00 41.72 2.97
2913 2947 5.060506 TCAGTTCCATTTTCGAACAAGCTA 58.939 37.500 0.00 0.00 41.72 3.32
2914 2948 3.882888 TCAGTTCCATTTTCGAACAAGCT 59.117 39.130 0.00 0.00 41.72 3.74
2915 2949 4.024048 TCTCAGTTCCATTTTCGAACAAGC 60.024 41.667 0.00 0.00 41.72 4.01
2916 2950 5.673337 TCTCAGTTCCATTTTCGAACAAG 57.327 39.130 0.00 0.00 41.72 3.16
2917 2951 7.659799 TCTTATCTCAGTTCCATTTTCGAACAA 59.340 33.333 0.00 0.00 41.72 2.83
2918 2952 7.158697 TCTTATCTCAGTTCCATTTTCGAACA 58.841 34.615 0.00 0.00 41.72 3.18
2919 2953 7.596749 TCTTATCTCAGTTCCATTTTCGAAC 57.403 36.000 0.00 0.00 39.96 3.95
2920 2954 8.040727 TGATCTTATCTCAGTTCCATTTTCGAA 58.959 33.333 0.00 0.00 0.00 3.71
2921 2955 7.555965 TGATCTTATCTCAGTTCCATTTTCGA 58.444 34.615 0.00 0.00 0.00 3.71
2922 2956 7.776933 TGATCTTATCTCAGTTCCATTTTCG 57.223 36.000 0.00 0.00 0.00 3.46
2936 2970 9.003658 CCGGCACTTAATATTTTGATCTTATCT 57.996 33.333 0.00 0.00 0.00 1.98
2937 2971 8.784043 ACCGGCACTTAATATTTTGATCTTATC 58.216 33.333 0.00 0.00 0.00 1.75
2938 2972 8.691661 ACCGGCACTTAATATTTTGATCTTAT 57.308 30.769 0.00 0.00 0.00 1.73
2939 2973 7.042321 CGACCGGCACTTAATATTTTGATCTTA 60.042 37.037 0.00 0.00 0.00 2.10
2940 2974 6.238374 CGACCGGCACTTAATATTTTGATCTT 60.238 38.462 0.00 0.00 0.00 2.40
2941 2975 5.236478 CGACCGGCACTTAATATTTTGATCT 59.764 40.000 0.00 0.00 0.00 2.75
2942 2976 5.007332 ACGACCGGCACTTAATATTTTGATC 59.993 40.000 0.00 0.00 0.00 2.92
2943 2977 4.879545 ACGACCGGCACTTAATATTTTGAT 59.120 37.500 0.00 0.00 0.00 2.57
2944 2978 4.255301 ACGACCGGCACTTAATATTTTGA 58.745 39.130 0.00 0.00 0.00 2.69
2945 2979 4.609691 ACGACCGGCACTTAATATTTTG 57.390 40.909 0.00 0.00 0.00 2.44
2946 2980 5.632244 AAACGACCGGCACTTAATATTTT 57.368 34.783 0.00 0.00 0.00 1.82
2947 2981 5.048573 ACAAAACGACCGGCACTTAATATTT 60.049 36.000 0.00 0.00 0.00 1.40
2948 2982 4.456566 ACAAAACGACCGGCACTTAATATT 59.543 37.500 0.00 0.00 0.00 1.28
2949 2983 4.004982 ACAAAACGACCGGCACTTAATAT 58.995 39.130 0.00 0.00 0.00 1.28
2950 2984 3.186817 CACAAAACGACCGGCACTTAATA 59.813 43.478 0.00 0.00 0.00 0.98
2951 2985 2.031508 CACAAAACGACCGGCACTTAAT 60.032 45.455 0.00 0.00 0.00 1.40
2952 2986 1.331138 CACAAAACGACCGGCACTTAA 59.669 47.619 0.00 0.00 0.00 1.85
2953 2987 0.938713 CACAAAACGACCGGCACTTA 59.061 50.000 0.00 0.00 0.00 2.24
2954 2988 1.725066 CACAAAACGACCGGCACTT 59.275 52.632 0.00 0.00 0.00 3.16
2955 2989 2.830285 GCACAAAACGACCGGCACT 61.830 57.895 0.00 0.00 0.00 4.40
2956 2990 1.500512 TAGCACAAAACGACCGGCAC 61.501 55.000 0.00 0.00 0.00 5.01
2957 2991 0.814410 TTAGCACAAAACGACCGGCA 60.814 50.000 0.00 0.00 0.00 5.69
2958 2992 0.519961 ATTAGCACAAAACGACCGGC 59.480 50.000 0.00 0.00 0.00 6.13
2959 2993 4.609691 AATATTAGCACAAAACGACCGG 57.390 40.909 0.00 0.00 0.00 5.28
2960 2994 5.025826 GGAAATATTAGCACAAAACGACCG 58.974 41.667 0.00 0.00 0.00 4.79
2961 2995 6.190954 AGGAAATATTAGCACAAAACGACC 57.809 37.500 0.00 0.00 0.00 4.79
2962 2996 8.193250 TCTAGGAAATATTAGCACAAAACGAC 57.807 34.615 0.00 0.00 0.00 4.34
2963 2997 8.826710 CATCTAGGAAATATTAGCACAAAACGA 58.173 33.333 0.00 0.00 0.00 3.85
2964 2998 7.587757 GCATCTAGGAAATATTAGCACAAAACG 59.412 37.037 0.00 0.00 0.00 3.60
2965 2999 7.862873 GGCATCTAGGAAATATTAGCACAAAAC 59.137 37.037 0.00 0.00 0.00 2.43
2966 3000 7.559533 TGGCATCTAGGAAATATTAGCACAAAA 59.440 33.333 0.00 0.00 0.00 2.44
2967 3001 7.059788 TGGCATCTAGGAAATATTAGCACAAA 58.940 34.615 0.00 0.00 0.00 2.83
2968 3002 6.600388 TGGCATCTAGGAAATATTAGCACAA 58.400 36.000 0.00 0.00 0.00 3.33
2969 3003 6.186420 TGGCATCTAGGAAATATTAGCACA 57.814 37.500 0.00 0.00 0.00 4.57
2970 3004 5.123027 GCTGGCATCTAGGAAATATTAGCAC 59.877 44.000 0.00 0.00 0.00 4.40
2971 3005 5.248640 GCTGGCATCTAGGAAATATTAGCA 58.751 41.667 0.00 0.00 0.00 3.49
2972 3006 4.331168 CGCTGGCATCTAGGAAATATTAGC 59.669 45.833 0.00 0.00 0.00 3.09
2973 3007 4.331168 GCGCTGGCATCTAGGAAATATTAG 59.669 45.833 0.00 0.00 39.62 1.73
2974 3008 4.253685 GCGCTGGCATCTAGGAAATATTA 58.746 43.478 0.00 0.00 39.62 0.98
2975 3009 3.077359 GCGCTGGCATCTAGGAAATATT 58.923 45.455 0.00 0.00 39.62 1.28
2976 3010 2.038952 TGCGCTGGCATCTAGGAAATAT 59.961 45.455 9.73 0.00 46.21 1.28
2977 3011 1.416030 TGCGCTGGCATCTAGGAAATA 59.584 47.619 9.73 0.00 46.21 1.40
2978 3012 0.181114 TGCGCTGGCATCTAGGAAAT 59.819 50.000 9.73 0.00 46.21 2.17
2979 3013 1.601703 TGCGCTGGCATCTAGGAAA 59.398 52.632 9.73 0.00 46.21 3.13
2980 3014 3.308512 TGCGCTGGCATCTAGGAA 58.691 55.556 9.73 0.00 46.21 3.36
2989 3023 1.303309 ATAAAGTGAGATGCGCTGGC 58.697 50.000 9.73 0.00 37.43 4.85
2990 3024 4.332543 TGTAAATAAAGTGAGATGCGCTGG 59.667 41.667 9.73 0.00 37.43 4.85
2991 3025 5.469373 TGTAAATAAAGTGAGATGCGCTG 57.531 39.130 9.73 0.00 37.43 5.18
2992 3026 6.494893 TTTGTAAATAAAGTGAGATGCGCT 57.505 33.333 9.73 0.00 39.53 5.92
2993 3027 7.410407 GGTTTTTGTAAATAAAGTGAGATGCGC 60.410 37.037 0.00 0.00 0.00 6.09
2994 3028 7.593273 TGGTTTTTGTAAATAAAGTGAGATGCG 59.407 33.333 0.00 0.00 0.00 4.73
2995 3029 8.810652 TGGTTTTTGTAAATAAAGTGAGATGC 57.189 30.769 0.00 0.00 0.00 3.91
3007 3041 9.566530 GAGCAATTTGTTTTGGTTTTTGTAAAT 57.433 25.926 0.00 0.00 37.44 1.40
3008 3042 8.787852 AGAGCAATTTGTTTTGGTTTTTGTAAA 58.212 25.926 0.00 0.00 37.44 2.01
3009 3043 8.329203 AGAGCAATTTGTTTTGGTTTTTGTAA 57.671 26.923 0.00 0.00 37.44 2.41
3010 3044 7.913674 AGAGCAATTTGTTTTGGTTTTTGTA 57.086 28.000 0.00 0.00 37.44 2.41
3011 3045 6.816134 AGAGCAATTTGTTTTGGTTTTTGT 57.184 29.167 0.00 0.00 37.44 2.83
3012 3046 8.518151 AAAAGAGCAATTTGTTTTGGTTTTTG 57.482 26.923 5.90 0.00 39.20 2.44
3035 3069 7.271511 ACAACAAATTGCTCCATACAGAAAAA 58.728 30.769 0.00 0.00 39.66 1.94
3036 3070 6.815089 ACAACAAATTGCTCCATACAGAAAA 58.185 32.000 0.00 0.00 39.66 2.29
3037 3071 6.403866 ACAACAAATTGCTCCATACAGAAA 57.596 33.333 0.00 0.00 39.66 2.52
3038 3072 6.403866 AACAACAAATTGCTCCATACAGAA 57.596 33.333 0.00 0.00 39.66 3.02
3039 3073 6.040278 TGAAACAACAAATTGCTCCATACAGA 59.960 34.615 0.00 0.00 39.66 3.41
3040 3074 6.215121 TGAAACAACAAATTGCTCCATACAG 58.785 36.000 0.00 0.00 39.66 2.74
3041 3075 6.154203 TGAAACAACAAATTGCTCCATACA 57.846 33.333 0.00 0.00 39.66 2.29
3042 3076 7.656707 ATTGAAACAACAAATTGCTCCATAC 57.343 32.000 0.00 0.00 39.66 2.39
3043 3077 7.714377 ACAATTGAAACAACAAATTGCTCCATA 59.286 29.630 13.59 0.00 39.66 2.74
3044 3078 6.543100 ACAATTGAAACAACAAATTGCTCCAT 59.457 30.769 13.59 0.00 39.66 3.41
3045 3079 5.879223 ACAATTGAAACAACAAATTGCTCCA 59.121 32.000 13.59 0.00 39.66 3.86
3046 3080 6.258507 AGACAATTGAAACAACAAATTGCTCC 59.741 34.615 13.59 0.00 39.66 4.70
3047 3081 7.121272 CAGACAATTGAAACAACAAATTGCTC 58.879 34.615 13.59 0.00 39.66 4.26
3048 3082 6.594937 ACAGACAATTGAAACAACAAATTGCT 59.405 30.769 13.59 3.88 39.66 3.91
3049 3083 6.774084 ACAGACAATTGAAACAACAAATTGC 58.226 32.000 13.59 2.05 39.66 3.56
3050 3084 8.867935 TGTACAGACAATTGAAACAACAAATTG 58.132 29.630 13.59 5.95 35.69 2.32
3051 3085 8.994429 TGTACAGACAATTGAAACAACAAATT 57.006 26.923 13.59 0.00 33.44 1.82
3052 3086 8.994429 TTGTACAGACAATTGAAACAACAAAT 57.006 26.923 13.59 0.00 40.72 2.32
3053 3087 8.818141 TTTGTACAGACAATTGAAACAACAAA 57.182 26.923 13.59 17.49 44.96 2.83
3054 3088 8.085296 ACTTTGTACAGACAATTGAAACAACAA 58.915 29.630 13.59 13.07 44.96 2.83
3055 3089 7.598278 ACTTTGTACAGACAATTGAAACAACA 58.402 30.769 13.59 7.89 44.96 3.33
3056 3090 9.221775 CTACTTTGTACAGACAATTGAAACAAC 57.778 33.333 13.59 5.37 44.96 3.32
3057 3091 8.402472 CCTACTTTGTACAGACAATTGAAACAA 58.598 33.333 13.59 11.13 44.96 2.83
3058 3092 7.771361 TCCTACTTTGTACAGACAATTGAAACA 59.229 33.333 13.59 5.81 44.96 2.83
3059 3093 8.149973 TCCTACTTTGTACAGACAATTGAAAC 57.850 34.615 13.59 3.33 44.96 2.78
3060 3094 8.740123 TTCCTACTTTGTACAGACAATTGAAA 57.260 30.769 13.59 0.00 44.96 2.69
3061 3095 8.740123 TTTCCTACTTTGTACAGACAATTGAA 57.260 30.769 13.59 0.00 44.96 2.69
3062 3096 8.617809 GTTTTCCTACTTTGTACAGACAATTGA 58.382 33.333 13.59 0.00 44.96 2.57
3063 3097 8.402472 TGTTTTCCTACTTTGTACAGACAATTG 58.598 33.333 3.24 3.24 44.96 2.32
3064 3098 8.514330 TGTTTTCCTACTTTGTACAGACAATT 57.486 30.769 0.00 0.00 44.96 2.32
3065 3099 8.514330 TTGTTTTCCTACTTTGTACAGACAAT 57.486 30.769 0.00 0.00 44.96 2.71
3066 3100 7.414762 GCTTGTTTTCCTACTTTGTACAGACAA 60.415 37.037 0.00 0.00 43.94 3.18
3067 3101 6.037830 GCTTGTTTTCCTACTTTGTACAGACA 59.962 38.462 0.00 0.00 0.00 3.41
3068 3102 6.037830 TGCTTGTTTTCCTACTTTGTACAGAC 59.962 38.462 0.00 0.00 0.00 3.51
3069 3103 6.116806 TGCTTGTTTTCCTACTTTGTACAGA 58.883 36.000 0.00 0.00 0.00 3.41
3070 3104 6.260050 TCTGCTTGTTTTCCTACTTTGTACAG 59.740 38.462 0.00 0.00 0.00 2.74
3071 3105 6.116806 TCTGCTTGTTTTCCTACTTTGTACA 58.883 36.000 0.00 0.00 0.00 2.90
3072 3106 6.613755 TCTGCTTGTTTTCCTACTTTGTAC 57.386 37.500 0.00 0.00 0.00 2.90
3073 3107 6.600032 TGTTCTGCTTGTTTTCCTACTTTGTA 59.400 34.615 0.00 0.00 0.00 2.41
3074 3108 5.417580 TGTTCTGCTTGTTTTCCTACTTTGT 59.582 36.000 0.00 0.00 0.00 2.83
3075 3109 5.743872 GTGTTCTGCTTGTTTTCCTACTTTG 59.256 40.000 0.00 0.00 0.00 2.77
3076 3110 5.448632 CGTGTTCTGCTTGTTTTCCTACTTT 60.449 40.000 0.00 0.00 0.00 2.66
3077 3111 4.035208 CGTGTTCTGCTTGTTTTCCTACTT 59.965 41.667 0.00 0.00 0.00 2.24
3078 3112 3.560068 CGTGTTCTGCTTGTTTTCCTACT 59.440 43.478 0.00 0.00 0.00 2.57
3079 3113 3.848554 GCGTGTTCTGCTTGTTTTCCTAC 60.849 47.826 0.00 0.00 0.00 3.18
3080 3114 2.289547 GCGTGTTCTGCTTGTTTTCCTA 59.710 45.455 0.00 0.00 0.00 2.94
3081 3115 1.065551 GCGTGTTCTGCTTGTTTTCCT 59.934 47.619 0.00 0.00 0.00 3.36
3082 3116 1.065551 AGCGTGTTCTGCTTGTTTTCC 59.934 47.619 0.00 0.00 40.48 3.13
3083 3117 2.475200 AGCGTGTTCTGCTTGTTTTC 57.525 45.000 0.00 0.00 40.48 2.29
3090 3124 0.249489 ACGAAGAAGCGTGTTCTGCT 60.249 50.000 7.85 0.00 46.68 4.24
3091 3125 0.582005 AACGAAGAAGCGTGTTCTGC 59.418 50.000 7.85 1.05 44.86 4.26
3092 3126 4.647291 ATTAACGAAGAAGCGTGTTCTG 57.353 40.909 7.85 4.39 44.86 3.02
3093 3127 5.440685 CAAATTAACGAAGAAGCGTGTTCT 58.559 37.500 7.85 0.00 44.86 3.01
3094 3128 4.086664 GCAAATTAACGAAGAAGCGTGTTC 59.913 41.667 0.00 0.00 44.86 3.18
3095 3129 3.972502 GCAAATTAACGAAGAAGCGTGTT 59.027 39.130 0.00 0.00 44.86 3.32
3096 3130 3.250040 AGCAAATTAACGAAGAAGCGTGT 59.750 39.130 0.00 0.00 44.86 4.49
3097 3131 3.810373 AGCAAATTAACGAAGAAGCGTG 58.190 40.909 0.00 0.00 44.86 5.34
3098 3132 7.745015 TATTTAGCAAATTAACGAAGAAGCGT 58.255 30.769 0.00 0.00 37.96 5.07
3099 3133 8.595781 TTATTTAGCAAATTAACGAAGAAGCG 57.404 30.769 0.00 0.00 32.38 4.68
3104 3138 9.834628 TGGTCTTTATTTAGCAAATTAACGAAG 57.165 29.630 0.00 0.00 32.38 3.79
3105 3139 9.615295 GTGGTCTTTATTTAGCAAATTAACGAA 57.385 29.630 0.00 0.00 32.38 3.85
3106 3140 8.238631 GGTGGTCTTTATTTAGCAAATTAACGA 58.761 33.333 0.00 0.00 32.38 3.85
3107 3141 7.486870 GGGTGGTCTTTATTTAGCAAATTAACG 59.513 37.037 0.00 0.00 32.38 3.18
3108 3142 7.486870 CGGGTGGTCTTTATTTAGCAAATTAAC 59.513 37.037 0.00 0.00 32.38 2.01
3109 3143 7.363094 CCGGGTGGTCTTTATTTAGCAAATTAA 60.363 37.037 0.00 0.00 32.38 1.40
3110 3144 6.095720 CCGGGTGGTCTTTATTTAGCAAATTA 59.904 38.462 0.00 0.00 32.38 1.40
3111 3145 5.105513 CCGGGTGGTCTTTATTTAGCAAATT 60.106 40.000 0.00 0.00 32.38 1.82
3112 3146 4.401202 CCGGGTGGTCTTTATTTAGCAAAT 59.599 41.667 0.00 0.00 34.90 2.32
3113 3147 3.759618 CCGGGTGGTCTTTATTTAGCAAA 59.240 43.478 0.00 0.00 0.00 3.68
3114 3148 3.349022 CCGGGTGGTCTTTATTTAGCAA 58.651 45.455 0.00 0.00 0.00 3.91
3115 3149 2.356330 CCCGGGTGGTCTTTATTTAGCA 60.356 50.000 14.18 0.00 0.00 3.49
3116 3150 2.294979 CCCGGGTGGTCTTTATTTAGC 58.705 52.381 14.18 0.00 0.00 3.09
3129 3163 3.567579 AATGCTGTCCACCCGGGTG 62.568 63.158 41.60 41.60 45.02 4.61
3130 3164 3.256960 AATGCTGTCCACCCGGGT 61.257 61.111 24.16 24.16 38.11 5.28
3131 3165 2.751436 CAATGCTGTCCACCCGGG 60.751 66.667 22.25 22.25 38.37 5.73
3132 3166 2.034066 ACAATGCTGTCCACCCGG 59.966 61.111 0.00 0.00 0.00 5.73
3133 3167 2.981560 GCACAATGCTGTCCACCCG 61.982 63.158 0.00 0.00 40.96 5.28
3134 3168 2.639327 GGCACAATGCTGTCCACCC 61.639 63.158 0.13 0.00 44.28 4.61
3135 3169 1.589716 GAGGCACAATGCTGTCCACC 61.590 60.000 0.13 0.00 44.28 4.61
3136 3170 0.607489 AGAGGCACAATGCTGTCCAC 60.607 55.000 0.13 0.00 44.28 4.02
3137 3171 0.111061 AAGAGGCACAATGCTGTCCA 59.889 50.000 0.13 0.00 44.28 4.02
3138 3172 1.251251 AAAGAGGCACAATGCTGTCC 58.749 50.000 0.13 0.00 44.28 4.02
3139 3173 4.503741 TTTAAAGAGGCACAATGCTGTC 57.496 40.909 0.13 0.00 44.28 3.51
3140 3174 5.010922 TGAATTTAAAGAGGCACAATGCTGT 59.989 36.000 0.13 0.00 44.28 4.40
3141 3175 5.472148 TGAATTTAAAGAGGCACAATGCTG 58.528 37.500 0.13 0.00 44.28 4.41
3142 3176 5.726980 TGAATTTAAAGAGGCACAATGCT 57.273 34.783 0.13 0.00 44.28 3.79
3143 3177 9.748708 TTATATGAATTTAAAGAGGCACAATGC 57.251 29.630 0.00 0.00 44.08 3.56
3147 3181 9.679661 TGACTTATATGAATTTAAAGAGGCACA 57.320 29.630 0.00 0.00 0.00 4.57
3158 3192 9.807649 GCCTTGATTGTTGACTTATATGAATTT 57.192 29.630 0.00 0.00 0.00 1.82
3159 3193 8.970020 TGCCTTGATTGTTGACTTATATGAATT 58.030 29.630 0.00 0.00 0.00 2.17
3160 3194 8.523915 TGCCTTGATTGTTGACTTATATGAAT 57.476 30.769 0.00 0.00 0.00 2.57
3161 3195 7.936496 TGCCTTGATTGTTGACTTATATGAA 57.064 32.000 0.00 0.00 0.00 2.57
3162 3196 9.625747 TTATGCCTTGATTGTTGACTTATATGA 57.374 29.630 0.00 0.00 0.00 2.15
3168 3202 9.851686 TCTATATTATGCCTTGATTGTTGACTT 57.148 29.630 0.00 0.00 0.00 3.01
3174 3208 9.797642 TGTTCATCTATATTATGCCTTGATTGT 57.202 29.630 0.00 0.00 0.00 2.71
3177 3211 9.887629 CTCTGTTCATCTATATTATGCCTTGAT 57.112 33.333 0.00 0.00 0.00 2.57
3178 3212 9.093458 TCTCTGTTCATCTATATTATGCCTTGA 57.907 33.333 0.00 0.00 0.00 3.02
3179 3213 9.716531 TTCTCTGTTCATCTATATTATGCCTTG 57.283 33.333 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.