Multiple sequence alignment - TraesCS4A01G446700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G446700 chr4A 100.000 6268 0 0 1 6268 714181521 714175254 0.000000e+00 11575.0
1 TraesCS4A01G446700 chr4A 94.937 79 0 3 5639 5714 660920131 660920054 3.070000e-23 121.0
2 TraesCS4A01G446700 chr4A 90.698 86 4 1 5638 5719 236541809 236541724 1.850000e-20 111.0
3 TraesCS4A01G446700 chr4A 75.000 172 24 11 17 188 714052333 714052181 1.890000e-05 62.1
4 TraesCS4A01G446700 chr7D 92.804 3335 199 20 2326 5642 18680790 18684101 0.000000e+00 4791.0
5 TraesCS4A01G446700 chr7D 85.084 1361 106 43 939 2284 18679523 18680801 0.000000e+00 1299.0
6 TraesCS4A01G446700 chr7D 84.746 531 27 17 350 840 18678749 18679265 3.400000e-132 483.0
7 TraesCS4A01G446700 chr7D 83.843 229 16 9 1 224 18678376 18678588 1.380000e-46 198.0
8 TraesCS4A01G446700 chr7D 88.095 168 15 2 5715 5882 18684104 18684266 1.780000e-45 195.0
9 TraesCS4A01G446700 chr7D 87.629 97 5 4 6123 6213 18684624 18684719 8.590000e-19 106.0
10 TraesCS4A01G446700 chr7D 92.308 52 4 0 5904 5955 18689753 18689804 2.420000e-09 75.0
11 TraesCS4A01G446700 chr7A 91.681 3378 226 24 2300 5642 19004414 19007771 0.000000e+00 4630.0
12 TraesCS4A01G446700 chr7A 84.053 1367 129 35 939 2290 19003144 19004436 0.000000e+00 1234.0
13 TraesCS4A01G446700 chr7A 96.562 320 9 1 5765 6082 19035094 19035413 4.300000e-146 529.0
14 TraesCS4A01G446700 chr7A 77.444 900 57 65 9 832 19002028 19002857 2.720000e-108 403.0
15 TraesCS4A01G446700 chr7A 91.398 186 10 4 6089 6268 19035475 19035660 3.750000e-62 250.0
16 TraesCS4A01G446700 chr7A 94.792 96 5 0 5981 6076 19008220 19008315 3.910000e-32 150.0
17 TraesCS4A01G446700 chr7A 82.955 176 11 8 5707 5882 19007768 19007924 2.360000e-29 141.0
18 TraesCS4A01G446700 chr7A 94.231 52 3 0 5904 5955 19007984 19008035 5.210000e-11 80.5
19 TraesCS4A01G446700 chr2D 78.608 388 67 13 1810 2194 119070731 119070357 6.280000e-60 243.0
20 TraesCS4A01G446700 chr2D 92.857 84 1 2 5634 5712 120560101 120560018 3.970000e-22 117.0
21 TraesCS4A01G446700 chr1B 76.109 586 67 32 1004 1589 91810435 91809923 8.120000e-59 239.0
22 TraesCS4A01G446700 chrUn 97.368 76 0 2 5638 5711 27084472 27084547 1.830000e-25 128.0
23 TraesCS4A01G446700 chr3D 98.611 72 1 0 5637 5708 56348083 56348154 1.830000e-25 128.0
24 TraesCS4A01G446700 chr3D 98.592 71 1 0 5638 5708 56348155 56348085 6.600000e-25 126.0
25 TraesCS4A01G446700 chr5B 97.297 74 1 1 5636 5708 551659873 551659946 2.370000e-24 124.0
26 TraesCS4A01G446700 chr6B 94.737 76 2 2 5634 5708 706878186 706878260 3.970000e-22 117.0
27 TraesCS4A01G446700 chr1A 95.890 73 0 1 5639 5708 286009946 286010018 1.430000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G446700 chr4A 714175254 714181521 6267 True 11575.000000 11575 100.0000 1 6268 1 chr4A.!!$R4 6267
1 TraesCS4A01G446700 chr7D 18678376 18684719 6343 False 1178.666667 4791 87.0335 1 6213 6 chr7D.!!$F2 6212
2 TraesCS4A01G446700 chr7A 19002028 19008315 6287 False 1106.416667 4630 87.5260 9 6076 6 chr7A.!!$F1 6067
3 TraesCS4A01G446700 chr7A 19035094 19035660 566 False 389.500000 529 93.9800 5765 6268 2 chr7A.!!$F2 503
4 TraesCS4A01G446700 chr1B 91809923 91810435 512 True 239.000000 239 76.1090 1004 1589 1 chr1B.!!$R1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 343 0.032952 TTTCTTCTACGCGTGCTGGT 59.967 50.0 24.59 0.00 0.00 4.00 F
1119 1430 0.032952 TCTTCACCAGGTTCGGTTCG 59.967 55.0 0.00 0.00 37.07 3.95 F
1304 1623 0.106708 TCATTCCTACTCATGGCGCC 59.893 55.0 22.73 22.73 0.00 6.53 F
2591 2949 0.108472 TCGATGAGACTTGGCAGCAG 60.108 55.0 0.00 0.00 0.00 4.24 F
3414 3787 0.037303 CAGAGCACACCCACATCCTT 59.963 55.0 0.00 0.00 0.00 3.36 F
4197 4583 0.250858 TCCCGTACTCCGAGTCACAA 60.251 55.0 3.74 0.00 39.56 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1300 1619 0.179045 ATGATTGACCAGGTAGGCGC 60.179 55.0 0.00 0.0 43.14 6.53 R
2573 2931 0.108472 TCTGCTGCCAAGTCTCATCG 60.108 55.0 0.00 0.0 0.00 3.84 R
2807 3175 0.764890 TCCAGTGGTTCCTTGTCAGG 59.235 55.0 9.54 0.0 42.50 3.86 R
3889 4265 0.374758 CGTGGTTCATCGCAATCAGG 59.625 55.0 0.00 0.0 0.00 3.86 R
5228 5617 0.036010 CCTCGACAGCCAATGGAACT 60.036 55.0 2.05 0.0 0.00 3.01 R
5294 5683 0.112995 TTGCAGGAATCCAAGCCACT 59.887 50.0 12.96 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 50 5.163963 GGATAAATTGTTTCGCAAGCAAAGG 60.164 40.000 3.24 0.00 40.86 3.11
48 54 3.011949 TGTTTCGCAAGCAAAGGAATC 57.988 42.857 0.00 0.00 37.18 2.52
50 56 1.909700 TTCGCAAGCAAAGGAATCCT 58.090 45.000 0.00 0.00 33.03 3.24
51 57 1.167851 TCGCAAGCAAAGGAATCCTG 58.832 50.000 0.90 0.00 32.13 3.86
52 58 0.457337 CGCAAGCAAAGGAATCCTGC 60.457 55.000 0.90 3.64 32.13 4.85
53 59 0.893447 GCAAGCAAAGGAATCCTGCT 59.107 50.000 9.90 9.90 34.90 4.24
54 60 1.403780 GCAAGCAAAGGAATCCTGCTG 60.404 52.381 15.51 11.20 33.92 4.41
55 61 0.893447 AAGCAAAGGAATCCTGCTGC 59.107 50.000 22.30 22.30 41.09 5.25
56 62 0.251474 AGCAAAGGAATCCTGCTGCA 60.251 50.000 27.95 0.88 42.36 4.41
57 63 0.108945 GCAAAGGAATCCTGCTGCAC 60.109 55.000 23.93 3.59 40.72 4.57
58 64 1.250328 CAAAGGAATCCTGCTGCACA 58.750 50.000 0.90 0.00 32.13 4.57
59 65 1.201647 CAAAGGAATCCTGCTGCACAG 59.798 52.381 0.90 8.73 46.77 3.66
60 66 0.403271 AAGGAATCCTGCTGCACAGT 59.597 50.000 0.90 0.00 45.68 3.55
61 67 0.322277 AGGAATCCTGCTGCACAGTG 60.322 55.000 0.00 0.00 45.68 3.66
62 68 0.321919 GGAATCCTGCTGCACAGTGA 60.322 55.000 4.15 10.65 45.68 3.41
63 69 1.527034 GAATCCTGCTGCACAGTGAA 58.473 50.000 4.15 0.00 45.68 3.18
64 70 1.467734 GAATCCTGCTGCACAGTGAAG 59.532 52.381 4.15 3.96 45.68 3.02
67 73 0.954449 CCTGCTGCACAGTGAAGGAG 60.954 60.000 21.02 21.02 45.68 3.69
94 100 0.166814 GCAGTGCAAAGATGACGGTC 59.833 55.000 11.09 0.00 0.00 4.79
165 172 4.479993 GTGGGCAGCGCTCTCCAT 62.480 66.667 25.28 0.00 0.00 3.41
166 173 3.720601 TGGGCAGCGCTCTCCATT 61.721 61.111 20.59 0.00 0.00 3.16
177 184 1.303309 CTCTCCATTCATTCACCCGC 58.697 55.000 0.00 0.00 0.00 6.13
197 204 0.956410 CGTCGTCCACCTCTCTCTGT 60.956 60.000 0.00 0.00 0.00 3.41
198 205 0.806241 GTCGTCCACCTCTCTCTGTC 59.194 60.000 0.00 0.00 0.00 3.51
199 206 0.693622 TCGTCCACCTCTCTCTGTCT 59.306 55.000 0.00 0.00 0.00 3.41
200 207 0.808125 CGTCCACCTCTCTCTGTCTG 59.192 60.000 0.00 0.00 0.00 3.51
219 252 1.002773 TGCTTCCCTTCGTTTCTACCC 59.997 52.381 0.00 0.00 0.00 3.69
242 275 1.447945 GGAGAAGAAGAGCAAGGTGC 58.552 55.000 0.00 0.00 45.46 5.01
243 276 1.447945 GAGAAGAAGAGCAAGGTGCC 58.552 55.000 0.00 0.00 46.52 5.01
244 277 0.767375 AGAAGAAGAGCAAGGTGCCA 59.233 50.000 0.00 0.00 46.52 4.92
263 296 0.968393 AAGGTGAGCTCGTCCTCCTC 60.968 60.000 24.14 3.37 30.85 3.71
264 297 1.379309 GGTGAGCTCGTCCTCCTCT 60.379 63.158 17.14 0.00 0.00 3.69
265 298 1.662438 GGTGAGCTCGTCCTCCTCTG 61.662 65.000 17.14 0.00 0.00 3.35
266 299 2.049185 TGAGCTCGTCCTCCTCTGC 61.049 63.158 9.64 0.00 0.00 4.26
273 313 1.376553 GTCCTCCTCTGCTGCCAAC 60.377 63.158 0.00 0.00 0.00 3.77
276 316 3.241530 TCCTCTGCTGCCAACGGT 61.242 61.111 0.00 0.00 0.00 4.83
283 323 1.008538 GCTGCCAACGGTGTTCTTG 60.009 57.895 0.00 0.00 0.00 3.02
292 332 4.573201 CCAACGGTGTTCTTGTTTCTTCTA 59.427 41.667 0.00 0.00 0.00 2.10
301 341 1.136690 TGTTTCTTCTACGCGTGCTG 58.863 50.000 24.59 12.16 0.00 4.41
302 342 0.438830 GTTTCTTCTACGCGTGCTGG 59.561 55.000 24.59 9.81 0.00 4.85
303 343 0.032952 TTTCTTCTACGCGTGCTGGT 59.967 50.000 24.59 0.00 0.00 4.00
304 344 0.032952 TTCTTCTACGCGTGCTGGTT 59.967 50.000 24.59 0.00 0.00 3.67
305 345 0.388134 TCTTCTACGCGTGCTGGTTC 60.388 55.000 24.59 0.00 0.00 3.62
306 346 1.674611 CTTCTACGCGTGCTGGTTCG 61.675 60.000 24.59 0.00 0.00 3.95
307 347 2.126618 CTACGCGTGCTGGTTCGA 60.127 61.111 24.59 0.00 0.00 3.71
308 348 1.516386 CTACGCGTGCTGGTTCGAT 60.516 57.895 24.59 0.00 0.00 3.59
309 349 1.472276 CTACGCGTGCTGGTTCGATC 61.472 60.000 24.59 0.00 0.00 3.69
310 350 2.202703 TACGCGTGCTGGTTCGATCA 62.203 55.000 24.59 0.00 0.00 2.92
311 351 2.792290 CGCGTGCTGGTTCGATCAG 61.792 63.158 0.00 10.76 35.49 2.90
312 352 1.738099 GCGTGCTGGTTCGATCAGT 60.738 57.895 14.91 0.00 34.89 3.41
313 353 0.457853 GCGTGCTGGTTCGATCAGTA 60.458 55.000 14.91 9.63 34.89 2.74
314 354 1.550065 CGTGCTGGTTCGATCAGTAG 58.450 55.000 14.91 3.66 34.89 2.57
315 355 1.135373 CGTGCTGGTTCGATCAGTAGT 60.135 52.381 14.91 0.00 34.89 2.73
316 356 2.096980 CGTGCTGGTTCGATCAGTAGTA 59.903 50.000 14.91 0.15 34.89 1.82
317 357 3.696898 GTGCTGGTTCGATCAGTAGTAG 58.303 50.000 14.91 0.00 34.89 2.57
318 358 2.099263 TGCTGGTTCGATCAGTAGTAGC 59.901 50.000 14.91 0.00 34.89 3.58
319 359 2.855187 GCTGGTTCGATCAGTAGTAGCG 60.855 54.545 14.91 0.00 34.89 4.26
320 360 1.065102 TGGTTCGATCAGTAGTAGCGC 59.935 52.381 0.00 0.00 0.00 5.92
321 361 1.334243 GGTTCGATCAGTAGTAGCGCT 59.666 52.381 17.26 17.26 0.00 5.92
322 362 2.602694 GGTTCGATCAGTAGTAGCGCTC 60.603 54.545 16.34 5.88 0.00 5.03
323 363 2.242047 TCGATCAGTAGTAGCGCTCT 57.758 50.000 16.34 14.03 0.00 4.09
324 364 1.867865 TCGATCAGTAGTAGCGCTCTG 59.132 52.381 16.34 15.92 0.00 3.35
325 365 1.661743 CGATCAGTAGTAGCGCTCTGC 60.662 57.143 16.34 14.76 46.98 4.26
343 383 3.008330 CTGCTATGCTCTGCTCTGTTTT 58.992 45.455 0.00 0.00 0.00 2.43
345 385 2.477525 GCTATGCTCTGCTCTGTTTTGC 60.478 50.000 0.00 0.00 0.00 3.68
394 487 3.707102 ACTAGGGGACAGAAGATAGCAAC 59.293 47.826 0.00 0.00 0.00 4.17
427 520 1.152881 GGAGATGTGGTGGATGGGC 60.153 63.158 0.00 0.00 0.00 5.36
546 646 4.814147 TGTTGTCAGATCTAGTGAGCTTG 58.186 43.478 0.00 0.00 36.73 4.01
559 659 3.189618 TGAGCTTGCTCACTCATATGG 57.810 47.619 19.87 0.00 37.99 2.74
560 660 2.767960 TGAGCTTGCTCACTCATATGGA 59.232 45.455 19.87 0.00 37.99 3.41
561 661 3.390311 TGAGCTTGCTCACTCATATGGAT 59.610 43.478 19.87 0.00 37.99 3.41
562 662 3.995705 GAGCTTGCTCACTCATATGGATC 59.004 47.826 16.71 0.00 32.98 3.36
564 664 3.244491 GCTTGCTCACTCATATGGATCCT 60.244 47.826 14.23 0.89 0.00 3.24
565 665 4.567971 CTTGCTCACTCATATGGATCCTC 58.432 47.826 14.23 0.00 0.00 3.71
566 666 2.902486 TGCTCACTCATATGGATCCTCC 59.098 50.000 14.23 0.00 36.96 4.30
588 688 2.434359 CTTCCCGCCGACAAGTCC 60.434 66.667 0.00 0.00 0.00 3.85
660 761 2.001361 CTTGTGCTAGCAGCCATGGC 62.001 60.000 30.12 30.12 41.51 4.40
684 785 8.839310 GCTAATTAGCTCCAGATTATTTCTCA 57.161 34.615 26.79 0.00 45.62 3.27
685 786 9.447157 GCTAATTAGCTCCAGATTATTTCTCAT 57.553 33.333 26.79 0.00 45.62 2.90
688 789 9.504708 AATTAGCTCCAGATTATTTCTCATCAG 57.495 33.333 0.00 0.00 29.93 2.90
699 821 9.209175 GATTATTTCTCATCAGTACGCCTAATT 57.791 33.333 0.00 0.00 0.00 1.40
703 825 4.023450 TCTCATCAGTACGCCTAATTACCG 60.023 45.833 0.00 0.58 0.00 4.02
711 833 2.103601 ACGCCTAATTACCGCCATTAGT 59.896 45.455 1.77 0.00 33.84 2.24
712 834 2.735134 CGCCTAATTACCGCCATTAGTC 59.265 50.000 0.00 0.00 33.84 2.59
713 835 3.554337 CGCCTAATTACCGCCATTAGTCT 60.554 47.826 0.00 0.00 33.84 3.24
731 853 2.552743 GTCTTCTTAACCACCTTGGCAC 59.447 50.000 0.00 0.00 42.67 5.01
754 876 2.097825 CCTGCAAGAAAGGAATCCCAG 58.902 52.381 0.00 0.00 36.91 4.45
755 877 2.291153 CCTGCAAGAAAGGAATCCCAGA 60.291 50.000 0.00 0.00 36.91 3.86
756 878 3.015327 CTGCAAGAAAGGAATCCCAGAG 58.985 50.000 0.00 0.00 34.07 3.35
757 879 1.747924 GCAAGAAAGGAATCCCAGAGC 59.252 52.381 0.00 0.00 33.88 4.09
758 880 2.373224 CAAGAAAGGAATCCCAGAGCC 58.627 52.381 0.00 0.00 33.88 4.70
759 881 0.922626 AGAAAGGAATCCCAGAGCCC 59.077 55.000 0.00 0.00 33.88 5.19
760 882 0.106469 GAAAGGAATCCCAGAGCCCC 60.106 60.000 0.00 0.00 33.88 5.80
761 883 0.850883 AAAGGAATCCCAGAGCCCCA 60.851 55.000 0.00 0.00 33.88 4.96
810 932 1.985116 ACGCCTCACTCTTCCTCCC 60.985 63.158 0.00 0.00 0.00 4.30
813 935 1.394151 CCTCACTCTTCCTCCCCCT 59.606 63.158 0.00 0.00 0.00 4.79
835 970 1.667830 CAGCTTCGCTTCCAACGGA 60.668 57.895 0.00 0.00 36.40 4.69
842 977 2.046314 CTTCCAACGGACGGCCAT 60.046 61.111 8.76 0.00 0.00 4.40
845 980 2.671619 CCAACGGACGGCCATTGT 60.672 61.111 16.15 0.00 0.00 2.71
848 983 2.265182 AACGGACGGCCATTGTTGG 61.265 57.895 8.76 0.00 46.66 3.77
856 991 2.176546 CCATTGTTGGCGCTCACG 59.823 61.111 7.64 0.00 44.07 4.35
866 1001 3.540014 CGCTCACGCAAGCTCTCG 61.540 66.667 7.88 6.09 40.23 4.04
867 1002 2.126307 GCTCACGCAAGCTCTCGA 60.126 61.111 13.48 0.00 45.62 4.04
868 1003 2.440569 GCTCACGCAAGCTCTCGAC 61.441 63.158 13.48 0.00 45.62 4.20
869 1004 1.211449 CTCACGCAAGCTCTCGACT 59.789 57.895 13.48 0.00 45.62 4.18
870 1005 0.448197 CTCACGCAAGCTCTCGACTA 59.552 55.000 13.48 0.00 45.62 2.59
871 1006 0.879090 TCACGCAAGCTCTCGACTAA 59.121 50.000 13.48 0.00 45.62 2.24
872 1007 1.268625 TCACGCAAGCTCTCGACTAAA 59.731 47.619 13.48 0.00 45.62 1.85
873 1008 1.651138 CACGCAAGCTCTCGACTAAAG 59.349 52.381 13.48 0.00 45.62 1.85
874 1009 0.642800 CGCAAGCTCTCGACTAAAGC 59.357 55.000 1.79 0.00 36.27 3.51
875 1010 1.714794 GCAAGCTCTCGACTAAAGCA 58.285 50.000 7.00 0.00 38.51 3.91
876 1011 2.069273 GCAAGCTCTCGACTAAAGCAA 58.931 47.619 7.00 0.00 38.51 3.91
879 1014 4.509600 GCAAGCTCTCGACTAAAGCAATAT 59.490 41.667 7.00 0.00 38.51 1.28
880 1015 5.692204 GCAAGCTCTCGACTAAAGCAATATA 59.308 40.000 7.00 0.00 38.51 0.86
901 1036 9.988815 AATATATGCTTCGACTTCTTGATTACT 57.011 29.630 0.00 0.00 0.00 2.24
902 1037 9.988815 ATATATGCTTCGACTTCTTGATTACTT 57.011 29.630 0.00 0.00 0.00 2.24
903 1038 5.845985 TGCTTCGACTTCTTGATTACTTG 57.154 39.130 0.00 0.00 0.00 3.16
904 1039 4.152402 TGCTTCGACTTCTTGATTACTTGC 59.848 41.667 0.00 0.00 0.00 4.01
905 1040 4.152402 GCTTCGACTTCTTGATTACTTGCA 59.848 41.667 0.00 0.00 0.00 4.08
907 1042 4.883083 TCGACTTCTTGATTACTTGCAGT 58.117 39.130 0.00 0.00 0.00 4.40
910 1045 5.164012 CGACTTCTTGATTACTTGCAGTCTG 60.164 44.000 0.00 0.00 0.00 3.51
912 1047 4.277515 TCTTGATTACTTGCAGTCTGCT 57.722 40.909 24.76 8.28 45.31 4.24
917 1052 5.491070 TGATTACTTGCAGTCTGCTTGTAT 58.509 37.500 24.76 15.29 45.31 2.29
920 1055 3.070018 ACTTGCAGTCTGCTTGTATGTC 58.930 45.455 24.76 0.00 45.31 3.06
921 1056 2.837532 TGCAGTCTGCTTGTATGTCA 57.162 45.000 24.76 0.00 45.31 3.58
923 1058 1.734465 GCAGTCTGCTTGTATGTCACC 59.266 52.381 17.89 0.00 40.96 4.02
924 1059 1.995484 CAGTCTGCTTGTATGTCACCG 59.005 52.381 0.00 0.00 0.00 4.94
925 1060 1.066858 AGTCTGCTTGTATGTCACCGG 60.067 52.381 0.00 0.00 0.00 5.28
926 1061 1.067142 GTCTGCTTGTATGTCACCGGA 60.067 52.381 9.46 0.00 0.00 5.14
928 1063 2.159099 TCTGCTTGTATGTCACCGGATC 60.159 50.000 9.46 0.00 0.00 3.36
929 1064 1.831106 TGCTTGTATGTCACCGGATCT 59.169 47.619 9.46 0.00 0.00 2.75
930 1065 2.205074 GCTTGTATGTCACCGGATCTG 58.795 52.381 9.46 0.00 0.00 2.90
931 1066 2.159099 GCTTGTATGTCACCGGATCTGA 60.159 50.000 9.46 0.00 0.00 3.27
933 1068 3.520290 TGTATGTCACCGGATCTGAAC 57.480 47.619 9.46 0.00 0.00 3.18
934 1069 2.829120 TGTATGTCACCGGATCTGAACA 59.171 45.455 9.46 0.00 0.00 3.18
935 1070 2.680312 ATGTCACCGGATCTGAACAG 57.320 50.000 9.46 0.00 0.00 3.16
936 1071 1.627864 TGTCACCGGATCTGAACAGA 58.372 50.000 9.46 6.98 42.37 3.41
937 1072 1.967779 TGTCACCGGATCTGAACAGAA 59.032 47.619 9.46 0.00 41.36 3.02
965 1276 5.057149 ACTGAAGAACACACCACTGATAAC 58.943 41.667 0.00 0.00 0.00 1.89
967 1278 3.418684 AGAACACACCACTGATAACCC 57.581 47.619 0.00 0.00 0.00 4.11
968 1279 2.979678 AGAACACACCACTGATAACCCT 59.020 45.455 0.00 0.00 0.00 4.34
969 1280 2.859165 ACACACCACTGATAACCCTG 57.141 50.000 0.00 0.00 0.00 4.45
970 1281 2.054799 ACACACCACTGATAACCCTGT 58.945 47.619 0.00 0.00 0.00 4.00
971 1282 2.038557 ACACACCACTGATAACCCTGTC 59.961 50.000 0.00 0.00 0.00 3.51
972 1283 1.628846 ACACCACTGATAACCCTGTCC 59.371 52.381 0.00 0.00 0.00 4.02
1115 1426 1.374252 CCGTCTTCACCAGGTTCGG 60.374 63.158 0.00 0.00 0.00 4.30
1116 1427 1.366366 CGTCTTCACCAGGTTCGGT 59.634 57.895 0.00 0.00 41.07 4.69
1117 1428 0.249741 CGTCTTCACCAGGTTCGGTT 60.250 55.000 0.00 0.00 37.07 4.44
1118 1429 1.509703 GTCTTCACCAGGTTCGGTTC 58.490 55.000 0.00 0.00 37.07 3.62
1119 1430 0.032952 TCTTCACCAGGTTCGGTTCG 59.967 55.000 0.00 0.00 37.07 3.95
1147 1458 2.667418 CCTCCCCTGCACTGTCAG 59.333 66.667 0.00 0.00 0.00 3.51
1213 1530 0.912486 AATCTCCTGGTGGTGGCTAC 59.088 55.000 0.00 0.00 34.23 3.58
1261 1580 9.461312 ACTGTACTTAATTAATCAAATCTGGCA 57.539 29.630 0.00 0.00 0.00 4.92
1298 1617 5.620738 TGCTTAGCTTCATTCCTACTCAT 57.379 39.130 5.60 0.00 0.00 2.90
1300 1619 4.754114 GCTTAGCTTCATTCCTACTCATGG 59.246 45.833 0.00 0.00 0.00 3.66
1301 1620 3.205784 AGCTTCATTCCTACTCATGGC 57.794 47.619 0.00 0.00 0.00 4.40
1302 1621 1.869767 GCTTCATTCCTACTCATGGCG 59.130 52.381 0.00 0.00 0.00 5.69
1303 1622 1.869767 CTTCATTCCTACTCATGGCGC 59.130 52.381 0.00 0.00 0.00 6.53
1304 1623 0.106708 TCATTCCTACTCATGGCGCC 59.893 55.000 22.73 22.73 0.00 6.53
1316 1635 1.635817 ATGGCGCCTACCTGGTCAAT 61.636 55.000 29.70 5.23 38.35 2.57
1317 1636 1.523938 GGCGCCTACCTGGTCAATC 60.524 63.158 22.15 0.00 38.35 2.67
1318 1637 1.220749 GCGCCTACCTGGTCAATCA 59.779 57.895 0.63 0.00 38.35 2.57
1366 1694 5.717078 TGTCGAAACCTAGTACTGAACAT 57.283 39.130 5.39 0.00 0.00 2.71
1407 1735 3.565482 TGTTGGAGTTCTGTTGATTGCTC 59.435 43.478 0.00 0.00 0.00 4.26
1429 1757 2.730672 GATCTGACCGCACGTGCAC 61.731 63.158 37.03 26.66 42.21 4.57
1444 1772 5.276868 GCACGTGCACTTTTAGATTCGATAT 60.277 40.000 34.52 0.00 41.59 1.63
1530 1858 7.226523 TGCTGAACATTATTATGCACTAATCGT 59.773 33.333 0.00 0.00 35.03 3.73
1539 1867 0.645868 GCACTAATCGTTCTGCCGAC 59.354 55.000 0.00 0.00 40.08 4.79
1544 1872 3.701604 ATCGTTCTGCCGACGCCTC 62.702 63.158 0.00 0.00 40.08 4.70
1551 1879 4.933064 GCCGACGCCTCGATCTGG 62.933 72.222 6.68 0.00 43.06 3.86
1595 1923 7.264221 ACATCTGACTGAACTGAATCTCATAC 58.736 38.462 0.00 0.00 0.00 2.39
1596 1924 7.123997 ACATCTGACTGAACTGAATCTCATACT 59.876 37.037 0.00 0.00 0.00 2.12
1597 1925 8.628280 CATCTGACTGAACTGAATCTCATACTA 58.372 37.037 0.00 0.00 0.00 1.82
1687 2015 7.416326 CCAAATTCTTCTCTGAATGATGCATGA 60.416 37.037 2.46 0.00 36.84 3.07
1705 2033 2.362736 TGATGTGCTGAAGAATGGCTC 58.637 47.619 0.00 0.00 0.00 4.70
1714 2042 2.208431 GAAGAATGGCTCCAGATGTCG 58.792 52.381 0.00 0.00 0.00 4.35
1729 2057 1.291184 TGTCGCCAATCTGACTTGCG 61.291 55.000 0.00 0.00 36.10 4.85
1740 2068 6.870439 CCAATCTGACTTGCGAATATATCTGA 59.130 38.462 0.00 0.00 0.00 3.27
1752 2080 6.975772 GCGAATATATCTGAGTGGATCTTACC 59.024 42.308 0.00 0.00 0.00 2.85
1755 2083 1.776662 TCTGAGTGGATCTTACCCGG 58.223 55.000 0.00 0.00 0.00 5.73
1800 2128 3.244875 TGGTGGATCTTATGCGGCATATT 60.245 43.478 22.24 11.12 0.00 1.28
1838 2166 2.008242 TGGTCAACCTTGGAAATGGG 57.992 50.000 0.10 0.00 36.82 4.00
1850 2178 1.684248 GGAAATGGGATGCTGCAGTCT 60.684 52.381 16.64 2.32 0.00 3.24
1862 2190 2.680221 GCTGCAGTCTCACCAGATCATT 60.680 50.000 16.64 0.00 0.00 2.57
1868 2196 3.262660 AGTCTCACCAGATCATTGCTGAA 59.737 43.478 0.00 0.00 35.39 3.02
1880 2208 1.598882 TTGCTGAATACAACACCGCA 58.401 45.000 0.00 0.00 0.00 5.69
1913 2241 2.448705 GCGCGAGAAGCTCAAGGAC 61.449 63.158 12.10 0.00 45.59 3.85
1971 2299 6.317140 GGTTTGCATCTGACATCTTATCTCAA 59.683 38.462 0.00 0.00 0.00 3.02
1972 2300 7.408123 GTTTGCATCTGACATCTTATCTCAAG 58.592 38.462 0.00 0.00 0.00 3.02
1973 2301 6.231258 TGCATCTGACATCTTATCTCAAGT 57.769 37.500 0.00 0.00 0.00 3.16
1975 2303 5.466058 GCATCTGACATCTTATCTCAAGTGG 59.534 44.000 0.00 0.00 0.00 4.00
1976 2304 6.684865 GCATCTGACATCTTATCTCAAGTGGA 60.685 42.308 0.00 0.00 0.00 4.02
1978 2308 5.127845 TCTGACATCTTATCTCAAGTGGACC 59.872 44.000 0.00 0.00 0.00 4.46
1991 2321 2.551270 AGTGGACCTGAGCATCCTTTA 58.449 47.619 0.00 0.00 35.86 1.85
1993 2323 3.135530 AGTGGACCTGAGCATCCTTTATC 59.864 47.826 0.00 0.00 35.86 1.75
1994 2324 3.114606 TGGACCTGAGCATCCTTTATCA 58.885 45.455 0.00 0.00 35.86 2.15
1999 2329 5.574188 ACCTGAGCATCCTTTATCACTTTT 58.426 37.500 0.00 0.00 0.00 2.27
2000 2330 6.012745 ACCTGAGCATCCTTTATCACTTTTT 58.987 36.000 0.00 0.00 0.00 1.94
2002 2332 6.151648 CCTGAGCATCCTTTATCACTTTTTCA 59.848 38.462 0.00 0.00 0.00 2.69
2003 2333 7.309377 CCTGAGCATCCTTTATCACTTTTTCAA 60.309 37.037 0.00 0.00 0.00 2.69
2007 2337 8.587608 AGCATCCTTTATCACTTTTTCAATTGA 58.412 29.630 3.38 3.38 0.00 2.57
2021 2351 6.769134 TTTCAATTGATCTGATCAGTGCAT 57.231 33.333 21.92 8.80 40.94 3.96
2024 2354 7.165460 TCAATTGATCTGATCAGTGCATTTT 57.835 32.000 21.92 13.67 40.94 1.82
2044 2374 7.040478 GCATTTTTGTATATGATACAGGAGGCA 60.040 37.037 0.03 0.00 0.00 4.75
2047 2377 8.995027 TTTTGTATATGATACAGGAGGCAATT 57.005 30.769 0.03 0.00 0.00 2.32
2050 2380 7.517320 TGTATATGATACAGGAGGCAATTGTT 58.483 34.615 7.40 0.00 0.00 2.83
2220 2550 7.987750 AAAAAGAAGAGGAGAATTCAGTACC 57.012 36.000 8.44 5.66 0.00 3.34
2222 2552 5.930837 AGAAGAGGAGAATTCAGTACCAG 57.069 43.478 8.44 0.00 0.00 4.00
2273 2611 8.429493 TTCGTTCTCTTACTCTGTCGATATTA 57.571 34.615 0.00 0.00 0.00 0.98
2274 2612 8.429493 TCGTTCTCTTACTCTGTCGATATTAA 57.571 34.615 0.00 0.00 0.00 1.40
2275 2613 9.053840 TCGTTCTCTTACTCTGTCGATATTAAT 57.946 33.333 0.00 0.00 0.00 1.40
2276 2614 9.320406 CGTTCTCTTACTCTGTCGATATTAATC 57.680 37.037 0.00 0.00 0.00 1.75
2285 2623 8.904834 ACTCTGTCGATATTAATCTACTGTTGT 58.095 33.333 0.00 0.00 32.18 3.32
2286 2624 9.175060 CTCTGTCGATATTAATCTACTGTTGTG 57.825 37.037 0.00 0.00 32.18 3.33
2287 2625 8.683615 TCTGTCGATATTAATCTACTGTTGTGT 58.316 33.333 0.00 0.00 32.18 3.72
2288 2626 8.628882 TGTCGATATTAATCTACTGTTGTGTG 57.371 34.615 0.00 0.00 30.92 3.82
2289 2627 8.463607 TGTCGATATTAATCTACTGTTGTGTGA 58.536 33.333 0.00 0.00 30.92 3.58
2290 2628 8.744011 GTCGATATTAATCTACTGTTGTGTGAC 58.256 37.037 0.00 0.00 0.00 3.67
2291 2629 8.463607 TCGATATTAATCTACTGTTGTGTGACA 58.536 33.333 0.00 0.00 0.00 3.58
2292 2630 9.083080 CGATATTAATCTACTGTTGTGTGACAA 57.917 33.333 0.00 0.00 35.42 3.18
2296 2634 9.944376 ATTAATCTACTGTTGTGTGACAATACT 57.056 29.630 0.00 0.00 40.59 2.12
2297 2635 9.772973 TTAATCTACTGTTGTGTGACAATACTT 57.227 29.630 0.00 0.00 40.59 2.24
2298 2636 7.891183 ATCTACTGTTGTGTGACAATACTTC 57.109 36.000 0.00 0.00 40.59 3.01
2299 2637 5.918576 TCTACTGTTGTGTGACAATACTTCG 59.081 40.000 0.00 0.00 40.59 3.79
2300 2638 4.689071 ACTGTTGTGTGACAATACTTCGA 58.311 39.130 0.00 0.00 40.59 3.71
2301 2639 5.297547 ACTGTTGTGTGACAATACTTCGAT 58.702 37.500 0.00 0.00 40.59 3.59
2302 2640 6.452242 ACTGTTGTGTGACAATACTTCGATA 58.548 36.000 0.00 0.00 40.59 2.92
2303 2641 7.097192 ACTGTTGTGTGACAATACTTCGATAT 58.903 34.615 0.00 0.00 40.59 1.63
2304 2642 7.602644 ACTGTTGTGTGACAATACTTCGATATT 59.397 33.333 0.00 0.00 40.59 1.28
2305 2643 8.317891 TGTTGTGTGACAATACTTCGATATTT 57.682 30.769 0.00 0.00 40.59 1.40
2306 2644 9.425577 TGTTGTGTGACAATACTTCGATATTTA 57.574 29.630 0.00 0.00 40.59 1.40
2323 2661 9.425577 TCGATATTTATTTACTGTTGTGTGACA 57.574 29.630 0.00 0.00 0.00 3.58
2335 2673 6.147821 ACTGTTGTGTGACAATACTTCTATGC 59.852 38.462 0.00 0.00 40.59 3.14
2374 2732 1.597742 TTGTGCTTGAGCTGGACTTC 58.402 50.000 4.44 0.00 42.66 3.01
2425 2783 1.296715 GCTGTCCAAGTCCATCGGT 59.703 57.895 0.00 0.00 0.00 4.69
2540 2898 2.275466 ACTACAAGGGCATGGTAACCT 58.725 47.619 0.00 0.00 35.78 3.50
2541 2899 2.026262 ACTACAAGGGCATGGTAACCTG 60.026 50.000 0.00 0.00 34.17 4.00
2547 2905 2.173569 AGGGCATGGTAACCTGATCTTC 59.826 50.000 0.00 0.00 33.48 2.87
2548 2906 2.092429 GGGCATGGTAACCTGATCTTCA 60.092 50.000 0.00 0.00 33.48 3.02
2551 2909 4.646492 GGCATGGTAACCTGATCTTCAATT 59.354 41.667 0.00 0.00 33.48 2.32
2558 2916 5.831702 AACCTGATCTTCAATTCTGCATC 57.168 39.130 0.00 0.00 0.00 3.91
2573 2931 8.437742 CAATTCTGCATCCATTGTTTAAACTTC 58.562 33.333 18.72 0.00 0.00 3.01
2589 2947 1.005340 CTTCGATGAGACTTGGCAGC 58.995 55.000 0.00 0.00 0.00 5.25
2591 2949 0.108472 TCGATGAGACTTGGCAGCAG 60.108 55.000 0.00 0.00 0.00 4.24
2598 2956 3.080319 GAGACTTGGCAGCAGAAAAGAT 58.920 45.455 0.00 0.00 0.00 2.40
2600 2958 1.891150 ACTTGGCAGCAGAAAAGATGG 59.109 47.619 0.00 0.00 0.00 3.51
2625 2984 7.095187 GGATGTAAACTTGTACTCTGTTTCCTG 60.095 40.741 12.23 0.00 35.77 3.86
2638 2997 4.223700 TCTGTTTCCTGCAGACTATGATGT 59.776 41.667 17.39 0.00 37.98 3.06
2661 3020 1.320344 ACGACAGAATCCGCAGCCTA 61.320 55.000 0.00 0.00 0.00 3.93
2667 3026 1.440145 GAATCCGCAGCCTAAGTGCC 61.440 60.000 0.00 0.00 37.67 5.01
2724 3083 4.083862 GGTCTCCCGGCAGACACC 62.084 72.222 26.55 7.74 44.18 4.16
2770 3137 6.501781 AGGTACTGACTATTGTATTGTACGC 58.498 40.000 0.00 0.00 37.18 4.42
2771 3138 5.689068 GGTACTGACTATTGTATTGTACGCC 59.311 44.000 0.00 0.00 32.37 5.68
2777 3144 8.528917 TGACTATTGTATTGTACGCCATTATC 57.471 34.615 0.00 0.00 0.00 1.75
2785 3152 1.867233 GTACGCCATTATCAGCCAGTG 59.133 52.381 0.00 0.00 0.00 3.66
2786 3153 0.253044 ACGCCATTATCAGCCAGTGT 59.747 50.000 0.00 0.00 0.00 3.55
2800 3168 2.282462 GTGTTGGGGCCTGGAGTG 60.282 66.667 0.84 0.00 0.00 3.51
2801 3169 4.284550 TGTTGGGGCCTGGAGTGC 62.285 66.667 0.84 0.00 0.00 4.40
2802 3170 4.284550 GTTGGGGCCTGGAGTGCA 62.285 66.667 0.84 0.00 0.00 4.57
2805 3173 2.757099 GGGGCCTGGAGTGCATTG 60.757 66.667 0.84 0.00 0.00 2.82
2807 3175 2.048603 GGGCCTGGAGTGCATTGTC 61.049 63.158 0.84 0.00 0.00 3.18
2809 3177 1.001641 GCCTGGAGTGCATTGTCCT 60.002 57.895 12.45 0.00 33.57 3.85
2811 3179 0.325933 CCTGGAGTGCATTGTCCTGA 59.674 55.000 16.45 0.00 34.52 3.86
2812 3180 1.446907 CTGGAGTGCATTGTCCTGAC 58.553 55.000 12.45 0.00 34.52 3.51
2838 3206 6.548321 AGGAACCACTGGAATGTTATTAACA 58.452 36.000 11.47 11.47 46.94 2.41
3009 3378 2.107950 TCCCGATGGTGTTCAATGTC 57.892 50.000 0.00 0.00 0.00 3.06
3100 3470 4.943705 AGGTAACACATCCTGCATAGTTTG 59.056 41.667 0.00 0.00 41.41 2.93
3122 3492 4.986034 TGTACATGGTCAAGTGACTAAACG 59.014 41.667 11.07 1.97 44.20 3.60
3145 3515 5.791974 CGTGTTCTGATTAATCTTTGTGCTG 59.208 40.000 16.24 0.00 0.00 4.41
3204 3574 2.608998 CGCGCTATGGAGAATGAGATGT 60.609 50.000 5.56 0.00 0.00 3.06
3243 3613 1.003839 GGCCTCGACATCACACCAA 60.004 57.895 0.00 0.00 0.00 3.67
3306 3676 6.963049 AAACTTGTCGTATGATACTGAACC 57.037 37.500 0.66 0.00 0.00 3.62
3307 3677 5.916661 ACTTGTCGTATGATACTGAACCT 57.083 39.130 0.66 0.00 0.00 3.50
3308 3678 5.892568 ACTTGTCGTATGATACTGAACCTC 58.107 41.667 0.66 0.00 0.00 3.85
3333 3706 2.566833 TTTGCACTGCATAGGTCACT 57.433 45.000 4.10 0.00 38.76 3.41
3345 3718 0.413832 AGGTCACTAGGCTTCTCCCA 59.586 55.000 0.00 0.00 34.51 4.37
3390 3763 1.001406 CAGCGTCTTGAGAAGGTCCTT 59.999 52.381 2.95 2.95 32.29 3.36
3414 3787 0.037303 CAGAGCACACCCACATCCTT 59.963 55.000 0.00 0.00 0.00 3.36
3462 3835 2.542020 TTGTTCGCAAGTGGATCTCA 57.458 45.000 0.00 0.00 39.48 3.27
3512 3885 5.717178 AGACTTTCACTGAAGTAGATGCCTA 59.283 40.000 0.00 0.00 39.84 3.93
3525 3901 0.839946 ATGCCTACCCTCACCATCAC 59.160 55.000 0.00 0.00 0.00 3.06
3531 3907 0.693049 ACCCTCACCATCACACCTTC 59.307 55.000 0.00 0.00 0.00 3.46
3532 3908 0.987294 CCCTCACCATCACACCTTCT 59.013 55.000 0.00 0.00 0.00 2.85
3543 3919 7.067859 CACCATCACACCTTCTTCATTATTCAT 59.932 37.037 0.00 0.00 0.00 2.57
3544 3920 7.067859 ACCATCACACCTTCTTCATTATTCATG 59.932 37.037 0.00 0.00 0.00 3.07
3545 3921 6.441093 TCACACCTTCTTCATTATTCATGC 57.559 37.500 0.00 0.00 32.13 4.06
3576 3952 2.912956 TCTAACTCTGCCCCATTTCTGT 59.087 45.455 0.00 0.00 0.00 3.41
3630 4006 2.196742 AGGCCAATCCTGACCTGATA 57.803 50.000 5.01 0.00 45.54 2.15
3660 4036 2.851263 ACAGCGATGGAAACCTTGTA 57.149 45.000 5.32 0.00 0.00 2.41
3663 4039 1.003118 AGCGATGGAAACCTTGTAGCA 59.997 47.619 0.00 0.00 0.00 3.49
3711 4087 7.928706 GGTGTTACTCATGTATGAATTCTAGCT 59.071 37.037 7.05 0.00 36.18 3.32
3718 4094 7.700505 TCATGTATGAATTCTAGCTGCTTTTG 58.299 34.615 7.79 0.00 33.08 2.44
3723 4099 5.522456 TGAATTCTAGCTGCTTTTGTGTTG 58.478 37.500 7.79 0.00 0.00 3.33
3787 4163 0.950555 TGATCGTTGGTCTGCAGTGC 60.951 55.000 14.67 8.58 0.00 4.40
3826 4202 3.256704 TGAGAAGACCAAGTACCCCAAT 58.743 45.455 0.00 0.00 0.00 3.16
3889 4265 1.067142 TCATGCCAGTTCACTACCGAC 60.067 52.381 0.00 0.00 0.00 4.79
3907 4283 1.398390 GACCTGATTGCGATGAACCAC 59.602 52.381 0.00 0.00 0.00 4.16
3934 4310 5.171339 ACTTCATCATCACTAGCACCTTT 57.829 39.130 0.00 0.00 0.00 3.11
4006 4382 7.988737 TGATCATATCCATCTGTTTTGTTGTC 58.011 34.615 0.00 0.00 0.00 3.18
4059 4445 1.227823 CAGCAAGGACACCGTTGGA 60.228 57.895 0.00 0.00 38.29 3.53
4065 4451 1.640917 AGGACACCGTTGGACAGTAT 58.359 50.000 0.00 0.00 0.00 2.12
4104 4490 1.024271 CAATGCCTGGAATGTACCGG 58.976 55.000 0.00 0.00 36.18 5.28
4197 4583 0.250858 TCCCGTACTCCGAGTCACAA 60.251 55.000 3.74 0.00 39.56 3.33
4209 4595 1.070758 GAGTCACAAAGGAGGCTCACA 59.929 52.381 17.69 0.00 0.00 3.58
4227 4613 1.274650 ACATCCCTCCACCCAGAGATT 60.275 52.381 0.00 0.00 35.82 2.40
4278 4664 4.960938 ACAATGAGCACAAGTGAGAACTA 58.039 39.130 4.04 0.00 0.00 2.24
4344 4730 7.255035 CCATTTATTGCTGTTCATCTGACTAGG 60.255 40.741 0.00 0.00 0.00 3.02
4346 4732 4.890158 TTGCTGTTCATCTGACTAGGAA 57.110 40.909 0.00 0.00 0.00 3.36
4397 4783 4.012374 GGAACAAGCCAATCATCTTCTCA 58.988 43.478 0.00 0.00 0.00 3.27
4406 4792 3.548745 ATCATCTTCTCAATGGCACGA 57.451 42.857 0.00 0.00 0.00 4.35
4502 4888 2.575532 CTTGTGGTTGTCTGTGGTGAT 58.424 47.619 0.00 0.00 0.00 3.06
4604 4990 1.070445 CCATGTCCGCTGGATCTCC 59.930 63.158 0.67 0.00 35.70 3.71
4607 4993 3.532155 GTCCGCTGGATCTCCGCT 61.532 66.667 0.67 0.00 39.43 5.52
4658 5044 3.822167 TCTACCGTTACATCTGTGACACA 59.178 43.478 8.26 8.26 34.62 3.72
4682 5068 0.313987 GTGCCTTTGTGCAGGTAACC 59.686 55.000 0.00 0.00 43.02 2.85
4700 5086 4.888326 AACCACATGTTGCATAAACCAT 57.112 36.364 0.00 0.00 38.06 3.55
4706 5092 6.919662 CCACATGTTGCATAAACCATATTCTC 59.080 38.462 0.00 0.00 38.06 2.87
4707 5093 7.416551 CCACATGTTGCATAAACCATATTCTCA 60.417 37.037 0.00 0.00 38.06 3.27
4711 5097 7.342581 TGTTGCATAAACCATATTCTCACCTA 58.657 34.615 0.00 0.00 38.06 3.08
4744 5130 5.140747 GTGTTCTCACATACCTCTTCTGT 57.859 43.478 0.00 0.00 43.37 3.41
4771 5157 2.357323 GCCTGCTTTCTATGAGGCTTTC 59.643 50.000 0.00 0.00 46.40 2.62
4864 5250 2.829741 TCATCGTGAATGGTGTGTCA 57.170 45.000 0.00 0.00 35.94 3.58
4912 5298 1.449956 CAAGGCCTCTGCTCTGCTC 60.450 63.158 5.23 0.00 37.74 4.26
5017 5403 7.588512 AGAAGTATGCAACTCAAAATTCACTC 58.411 34.615 0.00 0.00 37.50 3.51
5019 5405 2.998772 TGCAACTCAAAATTCACTCGC 58.001 42.857 0.00 0.00 0.00 5.03
5021 5410 3.066621 TGCAACTCAAAATTCACTCGCTT 59.933 39.130 0.00 0.00 0.00 4.68
5032 5421 3.833545 TCACTCGCTTCTAGTTCTGAC 57.166 47.619 0.00 0.00 0.00 3.51
5041 5430 5.902981 CGCTTCTAGTTCTGACGATAACTAC 59.097 44.000 0.00 0.00 37.19 2.73
5193 5582 2.835705 CGCCGCTACCTCGAGATGT 61.836 63.158 15.71 6.80 0.00 3.06
5198 5587 2.293677 CCGCTACCTCGAGATGTTGTAT 59.706 50.000 15.71 0.00 0.00 2.29
5234 5623 1.604308 CATGGCCAGCACAGTTCCA 60.604 57.895 13.05 0.00 0.00 3.53
5235 5624 0.968901 CATGGCCAGCACAGTTCCAT 60.969 55.000 13.05 0.00 37.99 3.41
5237 5626 1.180456 TGGCCAGCACAGTTCCATTG 61.180 55.000 0.00 0.00 0.00 2.82
5243 5632 0.242017 GCACAGTTCCATTGGCTGTC 59.758 55.000 11.68 5.54 40.99 3.51
5269 5658 1.204941 AGACTCCGCGAGCAAGTAATT 59.795 47.619 8.23 0.00 32.04 1.40
5283 5672 1.992557 AGTAATTTGGCCACCTCCTGA 59.007 47.619 3.88 0.00 0.00 3.86
5286 5675 1.434513 ATTTGGCCACCTCCTGACCA 61.435 55.000 3.88 0.00 0.00 4.02
5294 5683 2.106511 CCACCTCCTGACCAAAAGAAGA 59.893 50.000 0.00 0.00 0.00 2.87
5407 5798 6.482308 CAGTGTGCTAGTTTGGTTTAGTAGTT 59.518 38.462 0.00 0.00 0.00 2.24
5416 5807 5.881923 TTGGTTTAGTAGTTGGAGTGAGT 57.118 39.130 0.00 0.00 0.00 3.41
5417 5808 5.464030 TGGTTTAGTAGTTGGAGTGAGTC 57.536 43.478 0.00 0.00 0.00 3.36
5418 5809 4.022589 TGGTTTAGTAGTTGGAGTGAGTCG 60.023 45.833 0.00 0.00 0.00 4.18
5419 5810 4.217118 GGTTTAGTAGTTGGAGTGAGTCGA 59.783 45.833 0.00 0.00 0.00 4.20
5420 5811 5.392286 GTTTAGTAGTTGGAGTGAGTCGAG 58.608 45.833 0.00 0.00 0.00 4.04
5421 5812 3.420300 AGTAGTTGGAGTGAGTCGAGA 57.580 47.619 0.00 0.00 0.00 4.04
5422 5813 3.075884 AGTAGTTGGAGTGAGTCGAGAC 58.924 50.000 0.00 0.00 0.00 3.36
5488 5879 6.092259 GCTTGTCGTATTTCTTGGATGTTACT 59.908 38.462 0.00 0.00 0.00 2.24
5492 5883 7.095397 TGTCGTATTTCTTGGATGTTACTGTTG 60.095 37.037 0.00 0.00 0.00 3.33
5513 5904 1.897560 ATAATAGAAGCGGCCTTGGC 58.102 50.000 0.00 2.49 0.00 4.52
5554 5945 3.983044 AGTAGCATCCTTCCTCGTTTT 57.017 42.857 0.00 0.00 0.00 2.43
5573 5964 7.309177 TCGTTTTCAAGAAAATCTTTGTCACA 58.691 30.769 10.77 0.00 41.64 3.58
5582 5973 1.586422 TCTTTGTCACAGCTGCTGAC 58.414 50.000 34.28 28.04 38.86 3.51
5591 5982 3.963374 TCACAGCTGCTGACCTCTATTAT 59.037 43.478 34.28 6.45 35.18 1.28
5592 5983 4.406972 TCACAGCTGCTGACCTCTATTATT 59.593 41.667 34.28 5.91 35.18 1.40
5598 5989 9.664332 CAGCTGCTGACCTCTATTATTTAATAT 57.336 33.333 24.88 0.00 32.44 1.28
5648 6042 2.768834 GCTTTTGCTACTCCCTCCG 58.231 57.895 0.00 0.00 43.35 4.63
5649 6043 0.036294 GCTTTTGCTACTCCCTCCGT 60.036 55.000 0.00 0.00 43.35 4.69
5650 6044 1.610886 GCTTTTGCTACTCCCTCCGTT 60.611 52.381 0.00 0.00 43.35 4.44
5651 6045 2.347731 CTTTTGCTACTCCCTCCGTTC 58.652 52.381 0.00 0.00 0.00 3.95
5652 6046 0.611714 TTTGCTACTCCCTCCGTTCC 59.388 55.000 0.00 0.00 0.00 3.62
5653 6047 0.543410 TTGCTACTCCCTCCGTTCCA 60.543 55.000 0.00 0.00 0.00 3.53
5654 6048 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
5655 6049 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
5656 6050 1.002773 GCTACTCCCTCCGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
5657 6051 2.355818 GCTACTCCCTCCGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
5658 6052 3.118519 GCTACTCCCTCCGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
5659 6053 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5660 6054 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5661 6055 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5662 6056 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5663 6057 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5664 6058 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5665 6059 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5666 6060 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5667 6061 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5668 6062 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5669 6063 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5670 6064 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5671 6065 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5672 6066 6.373216 CGTTCCAAAATAGATGACCCAACTTA 59.627 38.462 0.00 0.00 0.00 2.24
5673 6067 7.094549 CGTTCCAAAATAGATGACCCAACTTAA 60.095 37.037 0.00 0.00 0.00 1.85
5674 6068 8.581578 GTTCCAAAATAGATGACCCAACTTAAA 58.418 33.333 0.00 0.00 0.00 1.52
5675 6069 8.713708 TCCAAAATAGATGACCCAACTTAAAA 57.286 30.769 0.00 0.00 0.00 1.52
5676 6070 8.802267 TCCAAAATAGATGACCCAACTTAAAAG 58.198 33.333 0.00 0.00 0.00 2.27
5677 6071 8.585018 CCAAAATAGATGACCCAACTTAAAAGT 58.415 33.333 0.00 0.00 42.04 2.66
5693 6087 9.981114 AACTTAAAAGTTGGGTCATCTATTTTG 57.019 29.630 7.29 0.00 46.80 2.44
5694 6088 8.585018 ACTTAAAAGTTGGGTCATCTATTTTGG 58.415 33.333 0.00 0.00 35.21 3.28
5695 6089 8.713708 TTAAAAGTTGGGTCATCTATTTTGGA 57.286 30.769 0.00 0.00 0.00 3.53
5696 6090 7.610580 AAAAGTTGGGTCATCTATTTTGGAA 57.389 32.000 0.00 0.00 0.00 3.53
5697 6091 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5698 6092 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5699 6093 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5700 6094 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5701 6095 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5702 6096 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
5703 6097 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5704 6098 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
5705 6099 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
5706 6100 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
5707 6101 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
5708 6102 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
5709 6103 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
5710 6104 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
5711 6105 2.019807 TGGAACGGAGGGAGTACTTT 57.980 50.000 0.00 0.00 0.00 2.66
5712 6106 3.173953 TGGAACGGAGGGAGTACTTTA 57.826 47.619 0.00 0.00 0.00 1.85
5832 6228 9.827411 CAATATCTATGAATGCAACAAGATCTG 57.173 33.333 16.50 13.59 0.00 2.90
5907 6341 3.633418 ACTCACACCCTCTATGTAGTCC 58.367 50.000 0.00 0.00 0.00 3.85
5977 6479 0.807496 GCTGTGAACCAAGCCATCTC 59.193 55.000 0.00 0.00 0.00 2.75
6083 6710 2.971901 ACTTCCCTTTTTCGTCCCAT 57.028 45.000 0.00 0.00 0.00 4.00
6085 6712 3.951663 ACTTCCCTTTTTCGTCCCATAG 58.048 45.455 0.00 0.00 0.00 2.23
6086 6713 3.585732 ACTTCCCTTTTTCGTCCCATAGA 59.414 43.478 0.00 0.00 0.00 1.98
6098 6811 6.576662 TCGTCCCATAGATCATAAGAACTC 57.423 41.667 0.00 0.00 0.00 3.01
6149 6862 5.432645 GAACTAATGAGAAAAGGGGAGGAG 58.567 45.833 0.00 0.00 0.00 3.69
6178 6891 3.391626 AGACCTAATTAAGCAGGGGTAGC 59.608 47.826 9.36 0.00 36.15 3.58
6179 6892 3.120108 ACCTAATTAAGCAGGGGTAGCA 58.880 45.455 9.36 0.00 36.15 3.49
6180 6893 3.136626 ACCTAATTAAGCAGGGGTAGCAG 59.863 47.826 9.36 0.00 36.15 4.24
6181 6894 3.136626 CCTAATTAAGCAGGGGTAGCAGT 59.863 47.826 0.00 0.00 0.00 4.40
6182 6895 3.739401 AATTAAGCAGGGGTAGCAGTT 57.261 42.857 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 7.598278 TGCGAAACAATTTATCCAATTAGTGT 58.402 30.769 0.00 0.00 32.90 3.55
50 56 1.071987 CCTCCTTCACTGTGCAGCA 59.928 57.895 2.12 0.00 0.00 4.41
51 57 0.250467 TTCCTCCTTCACTGTGCAGC 60.250 55.000 2.12 0.00 0.00 5.25
52 58 1.610102 CCTTCCTCCTTCACTGTGCAG 60.610 57.143 2.12 1.07 0.00 4.41
53 59 0.397941 CCTTCCTCCTTCACTGTGCA 59.602 55.000 2.12 0.00 0.00 4.57
54 60 0.322008 CCCTTCCTCCTTCACTGTGC 60.322 60.000 2.12 0.00 0.00 4.57
55 61 0.326264 CCCCTTCCTCCTTCACTGTG 59.674 60.000 0.17 0.17 0.00 3.66
56 62 0.842467 CCCCCTTCCTCCTTCACTGT 60.842 60.000 0.00 0.00 0.00 3.55
57 63 1.994463 CCCCCTTCCTCCTTCACTG 59.006 63.158 0.00 0.00 0.00 3.66
58 64 1.925972 GCCCCCTTCCTCCTTCACT 60.926 63.158 0.00 0.00 0.00 3.41
59 65 2.203549 CTGCCCCCTTCCTCCTTCAC 62.204 65.000 0.00 0.00 0.00 3.18
60 66 1.925455 CTGCCCCCTTCCTCCTTCA 60.925 63.158 0.00 0.00 0.00 3.02
61 67 1.925972 ACTGCCCCCTTCCTCCTTC 60.926 63.158 0.00 0.00 0.00 3.46
62 68 2.211279 ACTGCCCCCTTCCTCCTT 59.789 61.111 0.00 0.00 0.00 3.36
63 69 2.612115 CACTGCCCCCTTCCTCCT 60.612 66.667 0.00 0.00 0.00 3.69
64 70 4.432741 GCACTGCCCCCTTCCTCC 62.433 72.222 0.00 0.00 0.00 4.30
67 73 2.203625 TTTGCACTGCCCCCTTCC 60.204 61.111 0.00 0.00 0.00 3.46
118 124 0.661020 GGTATTTATGTTGCGCGGCT 59.339 50.000 8.83 0.00 0.00 5.52
156 163 1.303309 GGGTGAATGAATGGAGAGCG 58.697 55.000 0.00 0.00 0.00 5.03
163 170 1.721487 GACGGCGGGTGAATGAATG 59.279 57.895 13.24 0.00 0.00 2.67
164 171 1.813753 CGACGGCGGGTGAATGAAT 60.814 57.895 13.24 0.00 0.00 2.57
165 172 2.433491 CGACGGCGGGTGAATGAA 60.433 61.111 13.24 0.00 0.00 2.57
166 173 3.636313 GACGACGGCGGGTGAATGA 62.636 63.158 18.49 0.00 43.17 2.57
177 184 1.377463 AGAGAGAGGTGGACGACGG 60.377 63.158 0.00 0.00 0.00 4.79
197 204 2.028385 GGTAGAAACGAAGGGAAGCAGA 60.028 50.000 0.00 0.00 0.00 4.26
198 205 2.347731 GGTAGAAACGAAGGGAAGCAG 58.652 52.381 0.00 0.00 0.00 4.24
199 206 1.002773 GGGTAGAAACGAAGGGAAGCA 59.997 52.381 0.00 0.00 0.00 3.91
200 207 1.678123 GGGGTAGAAACGAAGGGAAGC 60.678 57.143 0.00 0.00 0.00 3.86
219 252 1.079819 TTGCTCTTCTTCTCCGCGG 60.080 57.895 22.12 22.12 0.00 6.46
242 275 1.216710 GAGGACGAGCTCACCTTGG 59.783 63.158 24.15 6.69 33.89 3.61
243 276 1.216710 GGAGGACGAGCTCACCTTG 59.783 63.158 24.15 7.36 33.89 3.61
244 277 0.968393 GAGGAGGACGAGCTCACCTT 60.968 60.000 24.15 13.56 33.89 3.50
263 296 1.447317 AAGAACACCGTTGGCAGCAG 61.447 55.000 1.39 0.00 0.00 4.24
264 297 1.453015 AAGAACACCGTTGGCAGCA 60.453 52.632 1.39 0.00 0.00 4.41
265 298 1.008538 CAAGAACACCGTTGGCAGC 60.009 57.895 0.00 0.00 0.00 5.25
266 299 0.738389 AACAAGAACACCGTTGGCAG 59.262 50.000 0.00 0.00 0.00 4.85
273 313 3.362693 GCGTAGAAGAAACAAGAACACCG 60.363 47.826 0.00 0.00 0.00 4.94
276 316 3.244345 CACGCGTAGAAGAAACAAGAACA 59.756 43.478 13.44 0.00 0.00 3.18
283 323 0.438830 CCAGCACGCGTAGAAGAAAC 59.561 55.000 13.44 0.00 0.00 2.78
292 332 2.809601 GATCGAACCAGCACGCGT 60.810 61.111 5.58 5.58 0.00 6.01
301 341 1.334243 AGCGCTACTACTGATCGAACC 59.666 52.381 8.99 0.00 0.00 3.62
302 342 2.288458 AGAGCGCTACTACTGATCGAAC 59.712 50.000 11.50 0.00 0.00 3.95
303 343 2.288186 CAGAGCGCTACTACTGATCGAA 59.712 50.000 11.50 0.00 32.90 3.71
304 344 1.867865 CAGAGCGCTACTACTGATCGA 59.132 52.381 11.50 0.00 32.90 3.59
305 345 1.661743 GCAGAGCGCTACTACTGATCG 60.662 57.143 23.62 6.05 37.77 3.69
306 346 2.044888 GCAGAGCGCTACTACTGATC 57.955 55.000 23.62 6.82 37.77 2.92
317 357 2.596795 GCAGAGCATAGCAGAGCGC 61.597 63.158 0.00 0.00 42.91 5.92
318 358 0.940519 GAGCAGAGCATAGCAGAGCG 60.941 60.000 0.00 0.00 35.48 5.03
319 359 0.390124 AGAGCAGAGCATAGCAGAGC 59.610 55.000 0.00 0.00 0.00 4.09
320 360 1.409790 ACAGAGCAGAGCATAGCAGAG 59.590 52.381 0.00 0.00 0.00 3.35
321 361 1.482954 ACAGAGCAGAGCATAGCAGA 58.517 50.000 0.00 0.00 0.00 4.26
322 362 2.312722 AACAGAGCAGAGCATAGCAG 57.687 50.000 0.00 0.00 0.00 4.24
323 363 2.745821 CAAAACAGAGCAGAGCATAGCA 59.254 45.455 0.00 0.00 0.00 3.49
324 364 2.477525 GCAAAACAGAGCAGAGCATAGC 60.478 50.000 0.00 0.00 0.00 2.97
325 365 3.008330 AGCAAAACAGAGCAGAGCATAG 58.992 45.455 0.00 0.00 0.00 2.23
326 366 2.745821 CAGCAAAACAGAGCAGAGCATA 59.254 45.455 0.00 0.00 0.00 3.14
327 367 1.540267 CAGCAAAACAGAGCAGAGCAT 59.460 47.619 0.00 0.00 0.00 3.79
332 372 4.736793 CACTTTAACAGCAAAACAGAGCAG 59.263 41.667 0.00 0.00 0.00 4.24
343 383 2.100584 CCAGCAAACCACTTTAACAGCA 59.899 45.455 0.00 0.00 0.00 4.41
345 385 3.632145 ACTCCAGCAAACCACTTTAACAG 59.368 43.478 0.00 0.00 0.00 3.16
394 487 2.046023 TCCGCAAGTGGATGCTGG 60.046 61.111 0.00 1.52 44.21 4.85
443 536 3.726517 CAACTTGGCAGGACCGCG 61.727 66.667 2.65 0.00 43.94 6.46
453 546 4.015084 AGAAGAGAATGATGGCAACTTGG 58.985 43.478 0.00 0.00 37.61 3.61
683 784 2.729882 GCGGTAATTAGGCGTACTGATG 59.270 50.000 0.00 0.00 0.00 3.07
684 785 2.288640 GGCGGTAATTAGGCGTACTGAT 60.289 50.000 0.00 0.00 0.00 2.90
685 786 1.067516 GGCGGTAATTAGGCGTACTGA 59.932 52.381 0.00 0.00 0.00 3.41
686 787 1.202440 TGGCGGTAATTAGGCGTACTG 60.202 52.381 0.00 0.00 35.52 2.74
687 788 1.113788 TGGCGGTAATTAGGCGTACT 58.886 50.000 0.00 0.00 35.52 2.73
688 789 2.159327 ATGGCGGTAATTAGGCGTAC 57.841 50.000 3.18 0.00 35.52 3.67
699 821 4.467082 TGGTTAAGAAGACTAATGGCGGTA 59.533 41.667 0.00 0.00 0.00 4.02
703 825 4.844884 AGGTGGTTAAGAAGACTAATGGC 58.155 43.478 0.00 0.00 0.00 4.40
711 833 2.808933 CGTGCCAAGGTGGTTAAGAAGA 60.809 50.000 0.00 0.00 40.46 2.87
712 834 1.535462 CGTGCCAAGGTGGTTAAGAAG 59.465 52.381 0.00 0.00 40.46 2.85
713 835 1.600023 CGTGCCAAGGTGGTTAAGAA 58.400 50.000 0.00 0.00 40.46 2.52
731 853 0.453390 GATTCCTTTCTTGCAGGCCG 59.547 55.000 0.00 0.00 0.00 6.13
756 878 4.148825 ACGAGATCAGCGTGGGGC 62.149 66.667 12.03 0.00 40.94 5.80
761 883 1.067846 TGTAAAGCACGAGATCAGCGT 60.068 47.619 7.69 7.69 43.67 5.07
796 918 0.908198 CAAGGGGGAGGAAGAGTGAG 59.092 60.000 0.00 0.00 0.00 3.51
825 953 1.674322 AATGGCCGTCCGTTGGAAG 60.674 57.895 0.00 0.00 40.02 3.46
851 986 0.448197 TAGTCGAGAGCTTGCGTGAG 59.552 55.000 8.67 0.00 0.00 3.51
853 988 1.651138 CTTTAGTCGAGAGCTTGCGTG 59.349 52.381 8.67 0.00 0.00 5.34
854 989 1.983972 CTTTAGTCGAGAGCTTGCGT 58.016 50.000 8.67 0.00 0.00 5.24
855 990 0.642800 GCTTTAGTCGAGAGCTTGCG 59.357 55.000 3.10 3.10 33.72 4.85
856 991 1.714794 TGCTTTAGTCGAGAGCTTGC 58.285 50.000 10.23 1.67 37.32 4.01
857 992 7.727955 CATATATTGCTTTAGTCGAGAGCTTG 58.272 38.462 10.23 0.00 37.32 4.01
858 993 7.881643 CATATATTGCTTTAGTCGAGAGCTT 57.118 36.000 10.23 3.04 37.32 3.74
875 1010 9.988815 AGTAATCAAGAAGTCGAAGCATATATT 57.011 29.630 0.00 0.00 0.00 1.28
876 1011 9.988815 AAGTAATCAAGAAGTCGAAGCATATAT 57.011 29.630 0.00 0.00 0.00 0.86
879 1014 6.036083 GCAAGTAATCAAGAAGTCGAAGCATA 59.964 38.462 0.00 0.00 0.00 3.14
880 1015 5.163814 GCAAGTAATCAAGAAGTCGAAGCAT 60.164 40.000 0.00 0.00 0.00 3.79
883 1018 5.845985 TGCAAGTAATCAAGAAGTCGAAG 57.154 39.130 0.00 0.00 0.00 3.79
884 1019 5.845985 CTGCAAGTAATCAAGAAGTCGAA 57.154 39.130 0.00 0.00 0.00 3.71
903 1038 1.734465 GGTGACATACAAGCAGACTGC 59.266 52.381 20.12 20.12 45.46 4.40
904 1039 1.995484 CGGTGACATACAAGCAGACTG 59.005 52.381 0.00 0.00 0.00 3.51
905 1040 1.066858 CCGGTGACATACAAGCAGACT 60.067 52.381 0.00 0.00 0.00 3.24
907 1042 1.262417 TCCGGTGACATACAAGCAGA 58.738 50.000 0.00 0.00 0.00 4.26
910 1045 2.159099 TCAGATCCGGTGACATACAAGC 60.159 50.000 0.00 0.00 0.00 4.01
912 1047 3.259625 TGTTCAGATCCGGTGACATACAA 59.740 43.478 0.00 0.00 0.00 2.41
917 1052 1.627864 TCTGTTCAGATCCGGTGACA 58.372 50.000 0.00 0.00 0.00 3.58
920 1055 2.029020 TCAGTTCTGTTCAGATCCGGTG 60.029 50.000 0.00 0.00 0.00 4.94
921 1056 2.248248 TCAGTTCTGTTCAGATCCGGT 58.752 47.619 0.00 0.00 0.00 5.28
923 1058 3.677121 CAGTTCAGTTCTGTTCAGATCCG 59.323 47.826 3.28 0.00 0.00 4.18
924 1059 4.887748 TCAGTTCAGTTCTGTTCAGATCC 58.112 43.478 3.28 0.00 34.86 3.36
925 1060 6.219473 TCTTCAGTTCAGTTCTGTTCAGATC 58.781 40.000 3.28 3.41 34.86 2.75
926 1061 6.166984 TCTTCAGTTCAGTTCTGTTCAGAT 57.833 37.500 3.28 0.00 34.86 2.90
928 1063 5.582269 TGTTCTTCAGTTCAGTTCTGTTCAG 59.418 40.000 0.00 0.00 34.86 3.02
929 1064 5.351465 GTGTTCTTCAGTTCAGTTCTGTTCA 59.649 40.000 0.00 0.00 34.86 3.18
930 1065 5.351465 TGTGTTCTTCAGTTCAGTTCTGTTC 59.649 40.000 0.00 0.00 34.86 3.18
931 1066 5.122396 GTGTGTTCTTCAGTTCAGTTCTGTT 59.878 40.000 0.00 0.00 34.86 3.16
933 1068 4.034510 GGTGTGTTCTTCAGTTCAGTTCTG 59.965 45.833 0.00 0.00 0.00 3.02
934 1069 4.192317 GGTGTGTTCTTCAGTTCAGTTCT 58.808 43.478 0.00 0.00 0.00 3.01
935 1070 3.938963 TGGTGTGTTCTTCAGTTCAGTTC 59.061 43.478 0.00 0.00 0.00 3.01
936 1071 3.689649 GTGGTGTGTTCTTCAGTTCAGTT 59.310 43.478 0.00 0.00 0.00 3.16
937 1072 3.055094 AGTGGTGTGTTCTTCAGTTCAGT 60.055 43.478 0.00 0.00 0.00 3.41
965 1276 4.709840 CTGCAGAACAGGACAGGG 57.290 61.111 8.42 0.00 43.19 4.45
1115 1426 0.757512 GGAGGGAATAGGGGTCGAAC 59.242 60.000 0.00 0.00 0.00 3.95
1116 1427 0.399519 GGGAGGGAATAGGGGTCGAA 60.400 60.000 0.00 0.00 0.00 3.71
1117 1428 1.235112 GGGAGGGAATAGGGGTCGA 59.765 63.158 0.00 0.00 0.00 4.20
1118 1429 1.842010 GGGGAGGGAATAGGGGTCG 60.842 68.421 0.00 0.00 0.00 4.79
1119 1430 0.768609 CAGGGGAGGGAATAGGGGTC 60.769 65.000 0.00 0.00 0.00 4.46
1174 1485 8.507249 GGAGATTTACATACTGGCATGATAAAC 58.493 37.037 0.00 0.00 0.00 2.01
1180 1497 4.758674 CCAGGAGATTTACATACTGGCATG 59.241 45.833 0.00 0.00 39.02 4.06
1243 1562 7.584108 CGCACTATGCCAGATTTGATTAATTA 58.416 34.615 0.00 0.00 41.12 1.40
1244 1563 6.441274 CGCACTATGCCAGATTTGATTAATT 58.559 36.000 0.00 0.00 41.12 1.40
1245 1564 5.563475 GCGCACTATGCCAGATTTGATTAAT 60.563 40.000 0.30 0.00 41.12 1.40
1246 1565 4.261155 GCGCACTATGCCAGATTTGATTAA 60.261 41.667 0.30 0.00 41.12 1.40
1247 1566 3.250762 GCGCACTATGCCAGATTTGATTA 59.749 43.478 0.30 0.00 41.12 1.75
1248 1567 2.033801 GCGCACTATGCCAGATTTGATT 59.966 45.455 0.30 0.00 41.12 2.57
1249 1568 1.605710 GCGCACTATGCCAGATTTGAT 59.394 47.619 0.30 0.00 41.12 2.57
1250 1569 1.016627 GCGCACTATGCCAGATTTGA 58.983 50.000 0.30 0.00 41.12 2.69
1251 1570 0.734309 TGCGCACTATGCCAGATTTG 59.266 50.000 5.66 0.00 41.12 2.32
1252 1571 1.462616 TTGCGCACTATGCCAGATTT 58.537 45.000 11.12 0.00 41.12 2.17
1253 1572 1.335810 CATTGCGCACTATGCCAGATT 59.664 47.619 11.12 0.00 41.12 2.40
1279 1598 4.708177 GCCATGAGTAGGAATGAAGCTAA 58.292 43.478 0.00 0.00 0.00 3.09
1280 1599 3.243873 CGCCATGAGTAGGAATGAAGCTA 60.244 47.826 0.00 0.00 0.00 3.32
1282 1601 1.869767 CGCCATGAGTAGGAATGAAGC 59.130 52.381 0.00 0.00 0.00 3.86
1298 1617 2.252072 GATTGACCAGGTAGGCGCCA 62.252 60.000 31.54 12.31 43.14 5.69
1300 1619 0.179045 ATGATTGACCAGGTAGGCGC 60.179 55.000 0.00 0.00 43.14 6.53
1301 1620 1.138859 TGATGATTGACCAGGTAGGCG 59.861 52.381 0.00 0.00 43.14 5.52
1302 1621 3.281727 TTGATGATTGACCAGGTAGGC 57.718 47.619 0.00 0.00 43.14 3.93
1303 1622 5.039920 TGATTGATGATTGACCAGGTAGG 57.960 43.478 0.00 0.00 45.67 3.18
1304 1623 7.578310 ATTTGATTGATGATTGACCAGGTAG 57.422 36.000 0.00 0.00 0.00 3.18
1341 1660 5.981315 TGTTCAGTACTAGGTTTCGACAAAG 59.019 40.000 0.00 0.00 0.00 2.77
1347 1666 6.811665 TCATCAATGTTCAGTACTAGGTTTCG 59.188 38.462 0.00 0.00 0.00 3.46
1407 1735 2.202797 CGTGCGGTCAGATCTGGG 60.203 66.667 22.42 12.91 0.00 4.45
1429 1757 6.670927 GCTGCGCCTTATATCGAATCTAAAAG 60.671 42.308 4.18 0.00 0.00 2.27
1444 1772 1.261938 TTCTACCCAGCTGCGCCTTA 61.262 55.000 8.66 0.00 0.00 2.69
1530 1858 3.411418 GATCGAGGCGTCGGCAGAA 62.411 63.158 26.64 9.17 46.80 3.02
1544 1872 2.353505 CCACATAGATCCTGCCAGATCG 60.354 54.545 0.00 0.00 46.06 3.69
1551 1879 1.672881 GTTGTGCCACATAGATCCTGC 59.327 52.381 0.00 0.00 0.00 4.85
1687 2015 1.005097 TGGAGCCATTCTTCAGCACAT 59.995 47.619 0.00 0.00 0.00 3.21
1694 2022 2.208431 CGACATCTGGAGCCATTCTTC 58.792 52.381 0.00 0.00 0.00 2.87
1697 2025 2.315246 GCGACATCTGGAGCCATTC 58.685 57.895 0.00 0.00 0.00 2.67
1705 2033 1.134580 AGTCAGATTGGCGACATCTGG 60.135 52.381 22.45 10.33 41.87 3.86
1714 2042 5.641209 AGATATATTCGCAAGTCAGATTGGC 59.359 40.000 0.00 0.00 39.48 4.52
1729 2057 7.416890 CCGGGTAAGATCCACTCAGATATATTC 60.417 44.444 0.00 0.00 0.00 1.75
1740 2068 1.041447 CGGACCGGGTAAGATCCACT 61.041 60.000 6.32 0.00 0.00 4.00
1752 2080 3.990092 TCATTCAGAATTATCGGACCGG 58.010 45.455 15.25 0.00 29.05 5.28
1755 2083 9.823647 ACCATATATCATTCAGAATTATCGGAC 57.176 33.333 0.00 0.00 29.05 4.79
1838 2166 0.248565 TCTGGTGAGACTGCAGCATC 59.751 55.000 15.27 12.72 44.27 3.91
1862 2190 1.598882 TTGCGGTGTTGTATTCAGCA 58.401 45.000 0.00 0.00 33.61 4.41
1868 2196 1.280710 TCAGGGATTGCGGTGTTGTAT 59.719 47.619 0.00 0.00 0.00 2.29
1880 2208 2.906458 CGCTCTGCCTCAGGGATT 59.094 61.111 0.00 0.00 32.95 3.01
1913 2241 2.436646 ACATCCTCAAAGGCGCCG 60.437 61.111 23.20 7.22 34.61 6.46
1971 2299 1.366319 AAAGGATGCTCAGGTCCACT 58.634 50.000 0.00 0.00 36.96 4.00
1972 2300 3.118261 TGATAAAGGATGCTCAGGTCCAC 60.118 47.826 0.00 0.00 36.96 4.02
1973 2301 3.114606 TGATAAAGGATGCTCAGGTCCA 58.885 45.455 0.00 0.00 36.96 4.02
1975 2303 4.414337 AGTGATAAAGGATGCTCAGGTC 57.586 45.455 0.00 0.00 0.00 3.85
1976 2304 4.851639 AAGTGATAAAGGATGCTCAGGT 57.148 40.909 0.00 0.00 0.00 4.00
1978 2308 7.149569 TGAAAAAGTGATAAAGGATGCTCAG 57.850 36.000 0.00 0.00 0.00 3.35
1991 2321 9.021807 ACTGATCAGATCAATTGAAAAAGTGAT 57.978 29.630 29.27 14.69 39.11 3.06
1993 2323 7.061905 GCACTGATCAGATCAATTGAAAAAGTG 59.938 37.037 29.27 17.50 39.11 3.16
1994 2324 7.088905 GCACTGATCAGATCAATTGAAAAAGT 58.911 34.615 29.27 6.81 39.11 2.66
1999 2329 6.769134 AATGCACTGATCAGATCAATTGAA 57.231 33.333 29.27 10.69 39.11 2.69
2000 2330 6.769134 AAATGCACTGATCAGATCAATTGA 57.231 33.333 29.27 11.26 39.11 2.57
2002 2332 7.383687 ACAAAAATGCACTGATCAGATCAATT 58.616 30.769 29.27 19.38 39.11 2.32
2003 2333 6.931838 ACAAAAATGCACTGATCAGATCAAT 58.068 32.000 29.27 15.08 39.11 2.57
2007 2337 9.346005 TCATATACAAAAATGCACTGATCAGAT 57.654 29.630 29.27 9.63 0.00 2.90
2014 2344 8.839343 TCCTGTATCATATACAAAAATGCACTG 58.161 33.333 0.00 0.00 0.00 3.66
2015 2345 8.978874 TCCTGTATCATATACAAAAATGCACT 57.021 30.769 0.00 0.00 0.00 4.40
2021 2351 8.995027 ATTGCCTCCTGTATCATATACAAAAA 57.005 30.769 1.76 0.00 0.00 1.94
2024 2354 7.517320 ACAATTGCCTCCTGTATCATATACAA 58.483 34.615 5.05 0.00 0.00 2.41
2044 2374 1.065709 ACCCACGGCGAGATAACAATT 60.066 47.619 16.62 0.00 0.00 2.32
2047 2377 1.514087 GACCCACGGCGAGATAACA 59.486 57.895 16.62 0.00 0.00 2.41
2050 2380 3.896133 GCGACCCACGGCGAGATA 61.896 66.667 16.62 0.00 42.83 1.98
2200 2530 5.584913 TCTGGTACTGAATTCTCCTCTTCT 58.415 41.667 7.05 0.00 32.07 2.85
2201 2531 5.654650 TCTCTGGTACTGAATTCTCCTCTTC 59.345 44.000 7.05 0.00 35.46 2.87
2209 2539 9.823647 TTATCTCAATTCTCTGGTACTGAATTC 57.176 33.333 0.00 0.00 38.05 2.17
2220 2550 9.543783 TCATCAGTTCATTATCTCAATTCTCTG 57.456 33.333 0.00 0.00 0.00 3.35
2273 2611 7.116376 CGAAGTATTGTCACACAACAGTAGATT 59.884 37.037 0.00 0.00 41.40 2.40
2274 2612 6.586463 CGAAGTATTGTCACACAACAGTAGAT 59.414 38.462 0.00 0.00 41.40 1.98
2275 2613 5.918576 CGAAGTATTGTCACACAACAGTAGA 59.081 40.000 0.00 0.00 41.40 2.59
2276 2614 5.918576 TCGAAGTATTGTCACACAACAGTAG 59.081 40.000 0.00 0.00 41.40 2.57
2277 2615 5.834169 TCGAAGTATTGTCACACAACAGTA 58.166 37.500 0.00 0.00 41.40 2.74
2278 2616 4.689071 TCGAAGTATTGTCACACAACAGT 58.311 39.130 0.00 0.00 41.40 3.55
2279 2617 5.845985 ATCGAAGTATTGTCACACAACAG 57.154 39.130 0.00 0.00 41.40 3.16
2280 2618 7.899178 AATATCGAAGTATTGTCACACAACA 57.101 32.000 0.00 0.00 41.40 3.33
2297 2635 9.425577 TGTCACACAACAGTAAATAAATATCGA 57.574 29.630 0.00 0.00 0.00 3.59
2305 2643 9.772973 AGAAGTATTGTCACACAACAGTAAATA 57.227 29.630 0.00 0.00 41.40 1.40
2306 2644 8.677148 AGAAGTATTGTCACACAACAGTAAAT 57.323 30.769 0.00 0.00 41.40 1.40
2307 2645 9.772973 ATAGAAGTATTGTCACACAACAGTAAA 57.227 29.630 0.00 0.00 41.40 2.01
2308 2646 9.203421 CATAGAAGTATTGTCACACAACAGTAA 57.797 33.333 0.00 0.00 41.40 2.24
2309 2647 7.330946 GCATAGAAGTATTGTCACACAACAGTA 59.669 37.037 0.00 0.00 41.40 2.74
2310 2648 6.147821 GCATAGAAGTATTGTCACACAACAGT 59.852 38.462 0.00 0.00 41.40 3.55
2311 2649 6.369890 AGCATAGAAGTATTGTCACACAACAG 59.630 38.462 0.00 0.00 41.40 3.16
2312 2650 6.230472 AGCATAGAAGTATTGTCACACAACA 58.770 36.000 0.00 0.00 41.40 3.33
2313 2651 6.727824 AGCATAGAAGTATTGTCACACAAC 57.272 37.500 0.00 0.00 41.40 3.32
2314 2652 7.308529 CCAAAGCATAGAAGTATTGTCACACAA 60.309 37.037 0.00 0.00 42.95 3.33
2315 2653 6.149308 CCAAAGCATAGAAGTATTGTCACACA 59.851 38.462 0.00 0.00 0.00 3.72
2316 2654 6.546395 CCAAAGCATAGAAGTATTGTCACAC 58.454 40.000 0.00 0.00 0.00 3.82
2317 2655 5.123820 GCCAAAGCATAGAAGTATTGTCACA 59.876 40.000 0.00 0.00 39.53 3.58
2318 2656 5.123820 TGCCAAAGCATAGAAGTATTGTCAC 59.876 40.000 0.00 0.00 46.52 3.67
2319 2657 5.252547 TGCCAAAGCATAGAAGTATTGTCA 58.747 37.500 0.00 0.00 46.52 3.58
2320 2658 5.818136 TGCCAAAGCATAGAAGTATTGTC 57.182 39.130 0.00 0.00 46.52 3.18
2335 2673 1.035139 AGTCCTTGTTGCTGCCAAAG 58.965 50.000 0.00 0.00 31.68 2.77
2425 2783 1.373748 GAGGAACTGCACGCCGTTA 60.374 57.895 0.00 0.00 41.55 3.18
2540 2898 5.655090 ACAATGGATGCAGAATTGAAGATCA 59.345 36.000 19.82 0.00 35.67 2.92
2541 2899 6.145338 ACAATGGATGCAGAATTGAAGATC 57.855 37.500 19.82 0.00 35.67 2.75
2547 2905 7.894376 AGTTTAAACAATGGATGCAGAATTG 57.106 32.000 20.06 14.10 37.33 2.32
2548 2906 7.329226 CGAAGTTTAAACAATGGATGCAGAATT 59.671 33.333 20.06 0.71 0.00 2.17
2551 2909 5.471797 TCGAAGTTTAAACAATGGATGCAGA 59.528 36.000 20.06 2.75 0.00 4.26
2558 2916 7.133891 AGTCTCATCGAAGTTTAAACAATGG 57.866 36.000 20.06 9.85 0.00 3.16
2573 2931 0.108472 TCTGCTGCCAAGTCTCATCG 60.108 55.000 0.00 0.00 0.00 3.84
2589 2947 9.003658 AGTACAAGTTTACATCCATCTTTTCTG 57.996 33.333 0.00 0.00 0.00 3.02
2591 2949 9.220767 AGAGTACAAGTTTACATCCATCTTTTC 57.779 33.333 0.00 0.00 0.00 2.29
2598 2956 6.708949 GGAAACAGAGTACAAGTTTACATCCA 59.291 38.462 12.46 0.00 36.37 3.41
2600 2958 7.571428 GCAGGAAACAGAGTACAAGTTTACATC 60.571 40.741 17.07 8.31 38.29 3.06
2625 2984 3.926527 TGTCGTTCAACATCATAGTCTGC 59.073 43.478 0.00 0.00 0.00 4.26
2638 2997 1.428448 CTGCGGATTCTGTCGTTCAA 58.572 50.000 0.00 0.00 0.00 2.69
2667 3026 1.761667 CCTCAGAGCTCCCTGGAGG 60.762 68.421 20.31 20.31 42.19 4.30
2727 3086 0.963962 TGTGGTGGAAGTCCGAGTAC 59.036 55.000 0.00 0.00 39.43 2.73
2756 3115 6.370442 GGCTGATAATGGCGTACAATACAATA 59.630 38.462 0.00 0.00 0.00 1.90
2770 3137 2.026641 CCCAACACTGGCTGATAATGG 58.973 52.381 0.00 1.42 41.99 3.16
2771 3138 2.026641 CCCCAACACTGGCTGATAATG 58.973 52.381 0.00 0.00 41.99 1.90
2785 3152 3.590466 ATGCACTCCAGGCCCCAAC 62.590 63.158 0.00 0.00 0.00 3.77
2786 3153 2.855770 AATGCACTCCAGGCCCCAA 61.856 57.895 0.00 0.00 0.00 4.12
2807 3175 0.764890 TCCAGTGGTTCCTTGTCAGG 59.235 55.000 9.54 0.00 42.50 3.86
2809 3177 2.174639 ACATTCCAGTGGTTCCTTGTCA 59.825 45.455 9.54 0.00 0.00 3.58
2811 3179 3.312736 AACATTCCAGTGGTTCCTTGT 57.687 42.857 9.54 4.44 0.00 3.16
2812 3180 5.982890 AATAACATTCCAGTGGTTCCTTG 57.017 39.130 9.54 3.82 0.00 3.61
2838 3206 5.987347 CCTGCATTTGTCAATCAAAAGAACT 59.013 36.000 0.00 0.00 46.97 3.01
2877 3246 1.133809 CACCCCAACCCTTCTCCAGA 61.134 60.000 0.00 0.00 0.00 3.86
3009 3378 4.193334 TGCGGCGAGAGGATGACG 62.193 66.667 12.98 0.00 0.00 4.35
3100 3470 4.986659 ACGTTTAGTCACTTGACCATGTAC 59.013 41.667 5.73 0.00 45.85 2.90
3122 3492 6.580041 CACAGCACAAAGATTAATCAGAACAC 59.420 38.462 17.56 3.28 0.00 3.32
3145 3515 2.876581 AGACAACCTTTGGGGAATCAC 58.123 47.619 0.00 0.00 38.76 3.06
3243 3613 6.620877 TGTCACACTTACAATAAGGATCCT 57.379 37.500 9.02 9.02 0.00 3.24
3316 3689 1.482182 CCTAGTGACCTATGCAGTGCA 59.518 52.381 22.22 22.22 44.86 4.57
3319 3692 2.166907 AGCCTAGTGACCTATGCAGT 57.833 50.000 0.00 0.00 37.29 4.40
3325 3698 1.644337 TGGGAGAAGCCTAGTGACCTA 59.356 52.381 0.00 0.00 36.66 3.08
3333 3706 1.210478 GTTGCATCTGGGAGAAGCCTA 59.790 52.381 0.00 0.00 38.09 3.93
3390 3763 1.051556 TGTGGGTGTGCTCTGTACCA 61.052 55.000 0.00 0.00 36.19 3.25
3438 3811 0.871722 TCCACTTGCGAACAATTCCG 59.128 50.000 0.00 0.00 34.61 4.30
3462 3835 0.463116 ACGGCCAGACTTCAAAACGT 60.463 50.000 2.24 0.00 0.00 3.99
3512 3885 0.693049 GAAGGTGTGATGGTGAGGGT 59.307 55.000 0.00 0.00 0.00 4.34
3543 3919 6.467677 GGGCAGAGTTAGAAAGATATATGCA 58.532 40.000 0.00 0.00 0.00 3.96
3544 3920 5.877564 GGGGCAGAGTTAGAAAGATATATGC 59.122 44.000 0.00 0.00 0.00 3.14
3545 3921 7.009179 TGGGGCAGAGTTAGAAAGATATATG 57.991 40.000 0.00 0.00 0.00 1.78
3552 3928 4.397417 CAGAAATGGGGCAGAGTTAGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
3555 3931 2.912956 ACAGAAATGGGGCAGAGTTAGA 59.087 45.455 0.00 0.00 0.00 2.10
3576 3952 1.184970 TCTCGTGTGCCACATCCTGA 61.185 55.000 0.00 0.00 33.40 3.86
3630 4006 3.950397 TCCATCGCTGTAGTTTCCAATT 58.050 40.909 0.00 0.00 0.00 2.32
3711 4087 2.028658 TGCTTCCAACAACACAAAAGCA 60.029 40.909 3.65 3.65 44.77 3.91
3718 4094 5.861787 GTGGTAAATATGCTTCCAACAACAC 59.138 40.000 0.00 0.00 0.00 3.32
3723 4099 8.629158 TCAATATGTGGTAAATATGCTTCCAAC 58.371 33.333 0.00 0.00 0.00 3.77
3796 4172 2.472049 GTCTTCTCAAGCGCGTGC 59.528 61.111 18.99 14.39 43.24 5.34
3811 4187 3.344515 GTCAGAATTGGGGTACTTGGTC 58.655 50.000 0.00 0.00 0.00 4.02
3826 4202 4.742012 ACTTCTTCCAGTAGAGGTCAGAA 58.258 43.478 0.00 0.00 29.43 3.02
3889 4265 0.374758 CGTGGTTCATCGCAATCAGG 59.625 55.000 0.00 0.00 0.00 3.86
3907 4283 2.389059 CTAGTGATGATGAAGTCGGCG 58.611 52.381 0.00 0.00 0.00 6.46
3910 4286 3.119291 GGTGCTAGTGATGATGAAGTCG 58.881 50.000 0.00 0.00 0.00 4.18
3934 4310 9.466497 AAATATTACTTTCCAGCAATCTCTTGA 57.534 29.630 0.00 0.00 34.04 3.02
4006 4382 1.066002 CCATTAGGCCATGCAAAGACG 59.934 52.381 5.01 0.00 0.00 4.18
4059 4445 2.833943 TGCCATGTGAGACTCATACTGT 59.166 45.455 8.73 0.00 0.00 3.55
4065 4451 2.038820 TGTGAATGCCATGTGAGACTCA 59.961 45.455 0.00 0.00 0.00 3.41
4104 4490 3.194005 ACATCGATACCATGGACAACC 57.806 47.619 21.47 1.57 0.00 3.77
4134 4520 6.369065 CACCAGGTGAGACTATGTTAAACTTC 59.631 42.308 15.35 0.00 35.23 3.01
4197 4583 0.985490 GGAGGGATGTGAGCCTCCTT 60.985 60.000 1.11 0.00 43.76 3.36
4209 4595 1.010046 TCAATCTCTGGGTGGAGGGAT 59.990 52.381 0.00 0.00 34.38 3.85
4251 4637 2.287644 TCACTTGTGCTCATTGTTGTCG 59.712 45.455 0.00 0.00 0.00 4.35
4278 4664 6.072783 GCTCAAGCAGTAAGAAACAATTCTCT 60.073 38.462 0.00 0.00 42.06 3.10
4397 4783 1.002624 ACGGTCCAATCGTGCCATT 60.003 52.632 0.00 0.00 39.55 3.16
4403 4789 0.677288 TCTTGACACGGTCCAATCGT 59.323 50.000 2.23 0.00 41.93 3.73
4406 4792 2.878406 CAAGTTCTTGACACGGTCCAAT 59.122 45.455 6.71 0.00 0.00 3.16
4430 4816 1.556911 CCATACAGCTCAACCAGACCT 59.443 52.381 0.00 0.00 0.00 3.85
4604 4990 1.078759 GGACACGGTTCATCTGAGCG 61.079 60.000 0.00 0.00 43.07 5.03
4607 4993 1.536940 TACGGACACGGTTCATCTGA 58.463 50.000 0.00 0.00 46.48 3.27
4682 5068 7.433131 GTGAGAATATGGTTTATGCAACATGTG 59.567 37.037 0.00 0.00 37.07 3.21
4706 5092 8.782533 GTGAGAACACAAATTTTTACTAGGTG 57.217 34.615 0.00 0.00 45.32 4.00
4771 5157 0.249073 CCTCGATGACAGTAAGCCCG 60.249 60.000 0.00 0.00 0.00 6.13
4828 5214 1.142748 GATCTCAGCAGGACCACCG 59.857 63.158 0.00 0.00 41.83 4.94
4864 5250 1.898863 AGGGATCAATGTGGTAGCCT 58.101 50.000 0.00 0.00 0.00 4.58
4912 5298 3.303395 GGCACTTCTCAAAGAACTCAACG 60.303 47.826 0.00 0.00 36.30 4.10
5017 5403 4.911053 AGTTATCGTCAGAACTAGAAGCG 58.089 43.478 0.00 0.00 34.13 4.68
5019 5405 9.279904 CAAAGTAGTTATCGTCAGAACTAGAAG 57.720 37.037 0.00 0.00 38.50 2.85
5021 5410 7.120873 AGCAAAGTAGTTATCGTCAGAACTAGA 59.879 37.037 0.00 0.00 38.50 2.43
5032 5421 3.179830 AGTCGCAGCAAAGTAGTTATCG 58.820 45.455 0.00 0.00 0.00 2.92
5041 5430 2.863658 GACTGTTAGTCGCAGCAAAG 57.136 50.000 0.00 0.00 35.28 2.77
5193 5582 1.406341 GCGGTACTTGAGGGCATACAA 60.406 52.381 0.00 0.00 0.00 2.41
5198 5587 2.345991 GTGCGGTACTTGAGGGCA 59.654 61.111 0.00 0.00 0.00 5.36
5228 5617 0.036010 CCTCGACAGCCAATGGAACT 60.036 55.000 2.05 0.00 0.00 3.01
5234 5623 0.616111 AGTCTCCCTCGACAGCCAAT 60.616 55.000 0.00 0.00 36.38 3.16
5235 5624 1.228894 AGTCTCCCTCGACAGCCAA 60.229 57.895 0.00 0.00 36.38 4.52
5237 5626 2.419739 GGAGTCTCCCTCGACAGCC 61.420 68.421 7.78 0.00 41.46 4.85
5243 5632 3.578272 CTCGCGGAGTCTCCCTCG 61.578 72.222 13.54 15.92 41.46 4.63
5283 5672 2.091885 TCCAAGCCACTCTTCTTTTGGT 60.092 45.455 1.50 0.00 37.09 3.67
5286 5675 3.829026 GGAATCCAAGCCACTCTTCTTTT 59.171 43.478 0.00 0.00 31.27 2.27
5294 5683 0.112995 TTGCAGGAATCCAAGCCACT 59.887 50.000 12.96 0.00 0.00 4.00
5416 5807 1.078356 CCTCTGTCCCGAGTCTCGA 60.078 63.158 23.74 1.25 43.74 4.04
5417 5808 0.677098 TTCCTCTGTCCCGAGTCTCG 60.677 60.000 15.53 15.53 40.07 4.04
5418 5809 1.546961 TTTCCTCTGTCCCGAGTCTC 58.453 55.000 0.00 0.00 0.00 3.36
5419 5810 2.011122 TTTTCCTCTGTCCCGAGTCT 57.989 50.000 0.00 0.00 0.00 3.24
5420 5811 2.028020 ACATTTTCCTCTGTCCCGAGTC 60.028 50.000 0.00 0.00 0.00 3.36
5421 5812 1.978580 ACATTTTCCTCTGTCCCGAGT 59.021 47.619 0.00 0.00 0.00 4.18
5422 5813 2.350522 CACATTTTCCTCTGTCCCGAG 58.649 52.381 0.00 0.00 0.00 4.63
5488 5879 4.150897 AGGCCGCTTCTATTATTCAACA 57.849 40.909 0.00 0.00 0.00 3.33
5492 5883 2.226674 GCCAAGGCCGCTTCTATTATTC 59.773 50.000 0.00 0.00 34.56 1.75
5513 5904 9.990888 GCTACTATTATTATTTCAGAAACGACG 57.009 33.333 0.00 0.00 0.00 5.12
5554 5945 5.734220 GCAGCTGTGACAAAGATTTTCTTGA 60.734 40.000 16.64 0.00 36.71 3.02
5607 6001 8.700439 AGCTCTTTATCCTACCTTCTAGTAAG 57.300 38.462 0.00 0.00 0.00 2.34
5620 6014 5.432645 GGAGTAGCAAAAGCTCTTTATCCT 58.567 41.667 0.00 0.00 31.63 3.24
5642 6036 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
5644 6038 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
5645 6039 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
5646 6040 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
5647 6041 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
5648 6042 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
5649 6043 8.713708 TTTAAGTTGGGTCATCTATTTTGGAA 57.286 30.769 0.00 0.00 0.00 3.53
5650 6044 8.713708 TTTTAAGTTGGGTCATCTATTTTGGA 57.286 30.769 0.00 0.00 0.00 3.53
5651 6045 8.585018 ACTTTTAAGTTGGGTCATCTATTTTGG 58.415 33.333 0.00 0.00 35.21 3.28
5652 6046 9.981114 AACTTTTAAGTTGGGTCATCTATTTTG 57.019 29.630 7.05 0.00 46.80 2.44
5668 6062 8.585018 CCAAAATAGATGACCCAACTTTTAAGT 58.415 33.333 0.00 0.00 42.04 2.24
5669 6063 8.802267 TCCAAAATAGATGACCCAACTTTTAAG 58.198 33.333 0.00 0.00 0.00 1.85
5670 6064 8.713708 TCCAAAATAGATGACCCAACTTTTAA 57.286 30.769 0.00 0.00 0.00 1.52
5671 6065 8.581578 GTTCCAAAATAGATGACCCAACTTTTA 58.418 33.333 0.00 0.00 0.00 1.52
5672 6066 7.441836 GTTCCAAAATAGATGACCCAACTTTT 58.558 34.615 0.00 0.00 0.00 2.27
5673 6067 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
5674 6068 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
5675 6069 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
5676 6070 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
5677 6071 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
5678 6072 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
5679 6073 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
5680 6074 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
5681 6075 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
5682 6076 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
5683 6077 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
5684 6078 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
5685 6079 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
5686 6080 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
5687 6081 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5688 6082 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
5689 6083 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
5690 6084 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5691 6085 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
5692 6086 2.019807 AAAGTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
5693 6087 4.892345 ACTATAAAGTACTCCCTCCGTTCC 59.108 45.833 0.00 0.00 32.84 3.62
5694 6088 6.462552 AACTATAAAGTACTCCCTCCGTTC 57.537 41.667 0.00 0.00 33.75 3.95
5695 6089 7.147828 GGTTAACTATAAAGTACTCCCTCCGTT 60.148 40.741 5.42 0.00 33.75 4.44
5696 6090 6.322456 GGTTAACTATAAAGTACTCCCTCCGT 59.678 42.308 5.42 0.00 33.75 4.69
5697 6091 6.322201 TGGTTAACTATAAAGTACTCCCTCCG 59.678 42.308 5.42 0.00 33.75 4.63
5698 6092 7.666063 TGGTTAACTATAAAGTACTCCCTCC 57.334 40.000 5.42 0.00 33.75 4.30
5700 6094 9.901172 CATTTGGTTAACTATAAAGTACTCCCT 57.099 33.333 5.42 0.00 33.75 4.20
5701 6095 9.895138 TCATTTGGTTAACTATAAAGTACTCCC 57.105 33.333 5.42 0.00 33.75 4.30
5704 6098 9.953565 TGCTCATTTGGTTAACTATAAAGTACT 57.046 29.630 5.42 0.00 33.75 2.73
5712 6106 9.243105 AGTAACAATGCTCATTTGGTTAACTAT 57.757 29.630 5.42 0.00 0.00 2.12
5748 6142 8.890410 TGGACTAAGTTAGGTTAGTGACTAAT 57.110 34.615 14.36 0.00 42.21 1.73
5749 6143 7.395489 CCTGGACTAAGTTAGGTTAGTGACTAA 59.605 40.741 14.36 0.00 42.21 2.24
5750 6144 6.888632 CCTGGACTAAGTTAGGTTAGTGACTA 59.111 42.308 14.36 0.00 42.21 2.59
5751 6145 5.715753 CCTGGACTAAGTTAGGTTAGTGACT 59.284 44.000 14.36 0.00 42.21 3.41
5759 6153 4.237018 TGGAAACCTGGACTAAGTTAGGT 58.763 43.478 14.36 1.63 45.07 3.08
5760 6154 4.903045 TGGAAACCTGGACTAAGTTAGG 57.097 45.455 14.36 0.97 36.39 2.69
5812 6206 4.579340 AGCCAGATCTTGTTGCATTCATAG 59.421 41.667 0.00 0.00 0.00 2.23
5820 6216 2.709213 AGAGAAGCCAGATCTTGTTGC 58.291 47.619 0.00 0.00 0.00 4.17
5832 6228 7.093322 ACAATTTCATATGTGAAGAGAAGCC 57.907 36.000 4.99 0.00 44.62 4.35
5907 6341 4.903638 TTGAGCTTCGACTAATTGTTCG 57.096 40.909 4.58 4.58 0.00 3.95
6020 6647 4.730657 CAGACATCATTTTCTGCAGTTCC 58.269 43.478 14.67 0.00 33.23 3.62
6083 6710 7.162973 TCAGGGTAGGAGTTCTTATGATCTA 57.837 40.000 0.00 0.00 0.00 1.98
6085 6712 6.071051 GGATCAGGGTAGGAGTTCTTATGATC 60.071 46.154 0.00 0.00 39.69 2.92
6086 6713 5.782845 GGATCAGGGTAGGAGTTCTTATGAT 59.217 44.000 0.00 0.00 0.00 2.45
6098 6811 1.823295 CGTGGTGGATCAGGGTAGG 59.177 63.158 0.00 0.00 0.00 3.18
6134 6847 1.557371 CCTCACTCCTCCCCTTTTCTC 59.443 57.143 0.00 0.00 0.00 2.87
6149 6862 4.443598 CCTGCTTAATTAGGTCTCCCTCAC 60.444 50.000 0.00 0.00 41.45 3.51
6178 6891 1.893808 AAGGTCTGCACGGCAACTG 60.894 57.895 0.35 0.00 38.41 3.16
6179 6892 1.893808 CAAGGTCTGCACGGCAACT 60.894 57.895 0.35 0.00 38.41 3.16
6180 6893 2.639286 CAAGGTCTGCACGGCAAC 59.361 61.111 0.35 2.60 38.41 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.