Multiple sequence alignment - TraesCS4A01G446300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G446300 chr4A 100.000 2627 0 0 1 2627 713895322 713892696 0.000000e+00 4852.0
1 TraesCS4A01G446300 chr4A 83.701 1951 219 57 317 2233 713933709 713935594 0.000000e+00 1749.0
2 TraesCS4A01G446300 chr4A 97.619 42 0 1 125 165 109862093 109862052 1.300000e-08 71.3
3 TraesCS4A01G446300 chr7D 83.602 1610 188 31 786 2377 18809270 18807719 0.000000e+00 1441.0
4 TraesCS4A01G446300 chr7A 87.349 1162 114 19 850 2000 19175337 19174198 0.000000e+00 1301.0
5 TraesCS4A01G446300 chr6A 89.655 667 69 0 971 1637 2132922 2133588 0.000000e+00 850.0
6 TraesCS4A01G446300 chr6A 80.000 185 28 6 52 234 455938315 455938492 7.630000e-26 128.0
7 TraesCS4A01G446300 chr6A 83.562 73 9 3 198 268 264840642 264840713 6.070000e-07 65.8
8 TraesCS4A01G446300 chr6D 88.496 678 78 0 979 1656 3317519 3318196 0.000000e+00 821.0
9 TraesCS4A01G446300 chr6D 79.474 190 30 6 47 234 318347049 318347231 2.740000e-25 126.0
10 TraesCS4A01G446300 chr6B 88.520 662 76 0 971 1632 6605209 6605870 0.000000e+00 802.0
11 TraesCS4A01G446300 chr6B 88.786 651 73 0 985 1635 6681928 6681278 0.000000e+00 798.0
12 TraesCS4A01G446300 chr6B 79.679 187 29 6 50 234 505802242 505802063 2.740000e-25 126.0
13 TraesCS4A01G446300 chr2B 85.110 638 92 1 990 1627 727221831 727221197 0.000000e+00 649.0
14 TraesCS4A01G446300 chr2D 84.882 635 93 1 993 1627 598729002 598728371 2.850000e-179 638.0
15 TraesCS4A01G446300 chr3D 84.545 220 31 2 52 268 314620248 314620029 5.690000e-52 215.0
16 TraesCS4A01G446300 chr3D 87.719 57 7 0 170 226 610196868 610196924 1.690000e-07 67.6
17 TraesCS4A01G446300 chr4B 86.592 179 22 1 65 241 5525855 5526033 2.060000e-46 196.0
18 TraesCS4A01G446300 chr5B 81.111 180 26 6 63 237 312766292 312766116 1.270000e-28 137.0
19 TraesCS4A01G446300 chr5D 79.429 175 31 4 61 231 498660546 498660719 4.590000e-23 119.0
20 TraesCS4A01G446300 chr4D 95.455 44 2 0 125 168 134626335 134626292 1.300000e-08 71.3
21 TraesCS4A01G446300 chr7B 83.607 61 10 0 205 265 348972236 348972296 1.020000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G446300 chr4A 713892696 713895322 2626 True 4852 4852 100.000 1 2627 1 chr4A.!!$R2 2626
1 TraesCS4A01G446300 chr4A 713933709 713935594 1885 False 1749 1749 83.701 317 2233 1 chr4A.!!$F1 1916
2 TraesCS4A01G446300 chr7D 18807719 18809270 1551 True 1441 1441 83.602 786 2377 1 chr7D.!!$R1 1591
3 TraesCS4A01G446300 chr7A 19174198 19175337 1139 True 1301 1301 87.349 850 2000 1 chr7A.!!$R1 1150
4 TraesCS4A01G446300 chr6A 2132922 2133588 666 False 850 850 89.655 971 1637 1 chr6A.!!$F1 666
5 TraesCS4A01G446300 chr6D 3317519 3318196 677 False 821 821 88.496 979 1656 1 chr6D.!!$F1 677
6 TraesCS4A01G446300 chr6B 6605209 6605870 661 False 802 802 88.520 971 1632 1 chr6B.!!$F1 661
7 TraesCS4A01G446300 chr6B 6681278 6681928 650 True 798 798 88.786 985 1635 1 chr6B.!!$R1 650
8 TraesCS4A01G446300 chr2B 727221197 727221831 634 True 649 649 85.110 990 1627 1 chr2B.!!$R1 637
9 TraesCS4A01G446300 chr2D 598728371 598729002 631 True 638 638 84.882 993 1627 1 chr2D.!!$R1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 955 0.097674 GGCATGCACGCAACTAGAAG 59.902 55.0 21.36 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 1874 0.035317 GAGCAAAAGGGGGCAAAAGG 59.965 55.0 0.0 0.0 0.0 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.401955 TTTTTGTCTTAAACTTGCAACAGC 57.598 33.333 0.00 0.00 0.00 4.40
25 26 3.708563 TGTCTTAAACTTGCAACAGCC 57.291 42.857 0.00 0.00 0.00 4.85
26 27 3.020274 TGTCTTAAACTTGCAACAGCCA 58.980 40.909 0.00 0.00 0.00 4.75
27 28 3.636300 TGTCTTAAACTTGCAACAGCCAT 59.364 39.130 0.00 0.00 0.00 4.40
28 29 4.824537 TGTCTTAAACTTGCAACAGCCATA 59.175 37.500 0.00 0.00 0.00 2.74
29 30 5.476599 TGTCTTAAACTTGCAACAGCCATAT 59.523 36.000 0.00 0.00 0.00 1.78
30 31 6.657117 TGTCTTAAACTTGCAACAGCCATATA 59.343 34.615 0.00 0.00 0.00 0.86
31 32 7.339212 TGTCTTAAACTTGCAACAGCCATATAT 59.661 33.333 0.00 0.00 0.00 0.86
32 33 8.190784 GTCTTAAACTTGCAACAGCCATATATT 58.809 33.333 0.00 0.00 0.00 1.28
33 34 8.748412 TCTTAAACTTGCAACAGCCATATATTT 58.252 29.630 0.00 0.00 0.00 1.40
34 35 8.925161 TTAAACTTGCAACAGCCATATATTTC 57.075 30.769 0.00 0.00 0.00 2.17
35 36 5.520376 ACTTGCAACAGCCATATATTTCC 57.480 39.130 0.00 0.00 0.00 3.13
36 37 5.203528 ACTTGCAACAGCCATATATTTCCT 58.796 37.500 0.00 0.00 0.00 3.36
37 38 5.658190 ACTTGCAACAGCCATATATTTCCTT 59.342 36.000 0.00 0.00 0.00 3.36
38 39 6.155049 ACTTGCAACAGCCATATATTTCCTTT 59.845 34.615 0.00 0.00 0.00 3.11
39 40 5.904941 TGCAACAGCCATATATTTCCTTTG 58.095 37.500 0.00 0.00 0.00 2.77
40 41 5.421693 TGCAACAGCCATATATTTCCTTTGT 59.578 36.000 0.00 0.00 0.00 2.83
41 42 6.070881 TGCAACAGCCATATATTTCCTTTGTT 60.071 34.615 0.00 0.00 0.00 2.83
42 43 6.476706 GCAACAGCCATATATTTCCTTTGTTC 59.523 38.462 0.00 0.00 0.00 3.18
43 44 7.631377 GCAACAGCCATATATTTCCTTTGTTCT 60.631 37.037 0.00 0.00 0.00 3.01
44 45 7.573968 ACAGCCATATATTTCCTTTGTTCTC 57.426 36.000 0.00 0.00 0.00 2.87
45 46 6.260936 ACAGCCATATATTTCCTTTGTTCTCG 59.739 38.462 0.00 0.00 0.00 4.04
46 47 6.483307 CAGCCATATATTTCCTTTGTTCTCGA 59.517 38.462 0.00 0.00 0.00 4.04
47 48 7.012327 CAGCCATATATTTCCTTTGTTCTCGAA 59.988 37.037 0.00 0.00 0.00 3.71
48 49 7.012421 AGCCATATATTTCCTTTGTTCTCGAAC 59.988 37.037 2.92 2.92 41.50 3.95
59 60 3.064207 TGTTCTCGAACATAAGGTGTGC 58.936 45.455 8.32 0.00 45.42 4.57
60 61 3.064207 GTTCTCGAACATAAGGTGTGCA 58.936 45.455 4.99 0.00 41.14 4.57
61 62 2.683968 TCTCGAACATAAGGTGTGCAC 58.316 47.619 10.75 10.75 41.14 4.57
62 63 1.390123 CTCGAACATAAGGTGTGCACG 59.610 52.381 13.13 0.00 41.14 5.34
63 64 0.179225 CGAACATAAGGTGTGCACGC 60.179 55.000 22.19 22.19 41.14 5.34
64 65 1.156736 GAACATAAGGTGTGCACGCT 58.843 50.000 28.09 13.43 41.14 5.07
65 66 1.535462 GAACATAAGGTGTGCACGCTT 59.465 47.619 28.09 19.79 41.14 4.68
66 67 1.604604 ACATAAGGTGTGCACGCTTT 58.395 45.000 27.61 27.61 40.28 3.51
67 68 1.953686 ACATAAGGTGTGCACGCTTTT 59.046 42.857 29.26 23.61 40.28 2.27
68 69 2.031157 ACATAAGGTGTGCACGCTTTTC 60.031 45.455 29.26 13.83 40.28 2.29
69 70 1.669604 TAAGGTGTGCACGCTTTTCA 58.330 45.000 29.26 12.67 0.00 2.69
70 71 0.814457 AAGGTGTGCACGCTTTTCAA 59.186 45.000 28.09 0.00 0.00 2.69
71 72 0.381801 AGGTGTGCACGCTTTTCAAG 59.618 50.000 28.09 0.00 0.00 3.02
72 73 0.380378 GGTGTGCACGCTTTTCAAGA 59.620 50.000 28.09 0.00 0.00 3.02
73 74 1.001378 GGTGTGCACGCTTTTCAAGAT 60.001 47.619 28.09 0.00 0.00 2.40
74 75 2.543653 GGTGTGCACGCTTTTCAAGATT 60.544 45.455 28.09 0.00 0.00 2.40
75 76 3.115554 GTGTGCACGCTTTTCAAGATTT 58.884 40.909 22.93 0.00 0.00 2.17
76 77 4.286910 GTGTGCACGCTTTTCAAGATTTA 58.713 39.130 22.93 0.00 0.00 1.40
77 78 4.737765 GTGTGCACGCTTTTCAAGATTTAA 59.262 37.500 22.93 0.00 0.00 1.52
78 79 4.975502 TGTGCACGCTTTTCAAGATTTAAG 59.024 37.500 13.13 0.00 0.00 1.85
79 80 4.976116 GTGCACGCTTTTCAAGATTTAAGT 59.024 37.500 0.00 0.00 0.00 2.24
80 81 6.140110 GTGCACGCTTTTCAAGATTTAAGTA 58.860 36.000 0.00 0.00 0.00 2.24
81 82 6.801862 GTGCACGCTTTTCAAGATTTAAGTAT 59.198 34.615 0.00 0.00 0.00 2.12
82 83 6.801377 TGCACGCTTTTCAAGATTTAAGTATG 59.199 34.615 0.00 0.00 0.00 2.39
83 84 7.021196 GCACGCTTTTCAAGATTTAAGTATGA 58.979 34.615 0.00 0.00 0.00 2.15
84 85 7.007456 GCACGCTTTTCAAGATTTAAGTATGAC 59.993 37.037 0.00 0.00 0.00 3.06
85 86 7.481798 CACGCTTTTCAAGATTTAAGTATGACC 59.518 37.037 0.00 0.00 0.00 4.02
86 87 7.174253 ACGCTTTTCAAGATTTAAGTATGACCA 59.826 33.333 0.00 0.00 0.00 4.02
87 88 8.184192 CGCTTTTCAAGATTTAAGTATGACCAT 58.816 33.333 0.00 0.00 0.00 3.55
107 108 9.253832 TGACCATAAATCTAACCAATGAAATGT 57.746 29.630 0.00 0.00 0.00 2.71
108 109 9.520204 GACCATAAATCTAACCAATGAAATGTG 57.480 33.333 0.00 0.00 0.00 3.21
109 110 8.477256 ACCATAAATCTAACCAATGAAATGTGG 58.523 33.333 0.00 0.00 41.00 4.17
110 111 7.927629 CCATAAATCTAACCAATGAAATGTGGG 59.072 37.037 0.00 0.00 39.39 4.61
111 112 6.933514 AAATCTAACCAATGAAATGTGGGT 57.066 33.333 0.00 0.00 39.39 4.51
112 113 9.707957 ATAAATCTAACCAATGAAATGTGGGTA 57.292 29.630 0.00 0.00 39.39 3.69
113 114 8.429237 AAATCTAACCAATGAAATGTGGGTAA 57.571 30.769 0.00 0.00 36.64 2.85
114 115 8.608185 AATCTAACCAATGAAATGTGGGTAAT 57.392 30.769 0.00 0.00 36.64 1.89
115 116 7.403312 TCTAACCAATGAAATGTGGGTAATG 57.597 36.000 0.00 0.00 36.64 1.90
116 117 6.951198 TCTAACCAATGAAATGTGGGTAATGT 59.049 34.615 0.00 0.00 36.64 2.71
117 118 5.404466 ACCAATGAAATGTGGGTAATGTG 57.596 39.130 0.00 0.00 39.39 3.21
118 119 4.222588 ACCAATGAAATGTGGGTAATGTGG 59.777 41.667 0.00 0.00 39.39 4.17
119 120 4.183101 CAATGAAATGTGGGTAATGTGGC 58.817 43.478 0.00 0.00 0.00 5.01
120 121 2.881734 TGAAATGTGGGTAATGTGGCA 58.118 42.857 0.00 0.00 0.00 4.92
121 122 3.439154 TGAAATGTGGGTAATGTGGCAT 58.561 40.909 0.00 0.00 0.00 4.40
122 123 3.195182 TGAAATGTGGGTAATGTGGCATG 59.805 43.478 0.00 0.00 0.00 4.06
123 124 1.113788 ATGTGGGTAATGTGGCATGC 58.886 50.000 9.90 9.90 0.00 4.06
124 125 0.251519 TGTGGGTAATGTGGCATGCA 60.252 50.000 21.36 2.54 0.00 3.96
125 126 0.894141 GTGGGTAATGTGGCATGCAA 59.106 50.000 21.36 4.92 0.00 4.08
126 127 1.274728 GTGGGTAATGTGGCATGCAAA 59.725 47.619 21.36 3.78 0.00 3.68
127 128 2.093553 GTGGGTAATGTGGCATGCAAAT 60.094 45.455 21.36 6.60 0.00 2.32
128 129 2.570752 TGGGTAATGTGGCATGCAAATT 59.429 40.909 21.36 16.84 0.00 1.82
129 130 3.771479 TGGGTAATGTGGCATGCAAATTA 59.229 39.130 21.36 15.86 0.00 1.40
130 131 4.408270 TGGGTAATGTGGCATGCAAATTAT 59.592 37.500 21.36 0.72 0.00 1.28
131 132 5.600069 TGGGTAATGTGGCATGCAAATTATA 59.400 36.000 21.36 2.16 0.00 0.98
132 133 5.925969 GGGTAATGTGGCATGCAAATTATAC 59.074 40.000 21.36 13.83 0.00 1.47
133 134 5.925969 GGTAATGTGGCATGCAAATTATACC 59.074 40.000 21.36 18.44 0.00 2.73
134 135 5.611128 AATGTGGCATGCAAATTATACCA 57.389 34.783 21.36 0.25 0.00 3.25
135 136 5.811796 ATGTGGCATGCAAATTATACCAT 57.188 34.783 21.36 2.99 0.00 3.55
136 137 5.611128 TGTGGCATGCAAATTATACCATT 57.389 34.783 21.36 0.00 0.00 3.16
137 138 5.358090 TGTGGCATGCAAATTATACCATTG 58.642 37.500 21.36 0.00 0.00 2.82
138 139 5.128335 TGTGGCATGCAAATTATACCATTGA 59.872 36.000 21.36 0.00 0.00 2.57
139 140 6.047870 GTGGCATGCAAATTATACCATTGAA 58.952 36.000 21.36 0.00 0.00 2.69
140 141 6.707161 GTGGCATGCAAATTATACCATTGAAT 59.293 34.615 21.36 0.00 0.00 2.57
141 142 7.227116 GTGGCATGCAAATTATACCATTGAATT 59.773 33.333 21.36 0.00 0.00 2.17
142 143 7.441760 TGGCATGCAAATTATACCATTGAATTC 59.558 33.333 21.36 0.00 0.00 2.17
143 144 7.441760 GGCATGCAAATTATACCATTGAATTCA 59.558 33.333 21.36 3.38 0.00 2.57
144 145 8.995220 GCATGCAAATTATACCATTGAATTCAT 58.005 29.630 14.21 0.00 0.00 2.57
171 172 9.665719 ATTCAAAAGAAGTTTACAATGGTGTTT 57.334 25.926 0.00 0.00 39.30 2.83
172 173 9.495572 TTCAAAAGAAGTTTACAATGGTGTTTT 57.504 25.926 0.00 0.00 39.30 2.43
173 174 9.495572 TCAAAAGAAGTTTACAATGGTGTTTTT 57.504 25.926 0.00 0.00 39.30 1.94
216 217 9.913310 TGTATTATTGGTCTAATTGATGGTCAA 57.087 29.630 0.00 0.00 41.09 3.18
219 220 8.877864 TTATTGGTCTAATTGATGGTCAAAGT 57.122 30.769 0.00 0.00 40.12 2.66
220 221 7.781324 ATTGGTCTAATTGATGGTCAAAGTT 57.219 32.000 0.00 0.00 40.12 2.66
221 222 8.877864 ATTGGTCTAATTGATGGTCAAAGTTA 57.122 30.769 0.00 0.00 40.12 2.24
222 223 8.698973 TTGGTCTAATTGATGGTCAAAGTTAA 57.301 30.769 0.00 0.00 40.12 2.01
223 224 8.698973 TGGTCTAATTGATGGTCAAAGTTAAA 57.301 30.769 0.00 0.00 40.12 1.52
224 225 9.308000 TGGTCTAATTGATGGTCAAAGTTAAAT 57.692 29.630 0.00 0.00 40.12 1.40
225 226 9.788960 GGTCTAATTGATGGTCAAAGTTAAATC 57.211 33.333 0.00 0.00 40.12 2.17
228 229 9.708222 CTAATTGATGGTCAAAGTTAAATCTCG 57.292 33.333 0.00 0.00 40.12 4.04
229 230 7.921786 ATTGATGGTCAAAGTTAAATCTCGA 57.078 32.000 0.00 0.00 40.12 4.04
230 231 7.737972 TTGATGGTCAAAGTTAAATCTCGAA 57.262 32.000 0.00 0.00 32.71 3.71
231 232 7.737972 TGATGGTCAAAGTTAAATCTCGAAA 57.262 32.000 0.00 0.00 0.00 3.46
232 233 8.160521 TGATGGTCAAAGTTAAATCTCGAAAA 57.839 30.769 0.00 0.00 0.00 2.29
233 234 8.289618 TGATGGTCAAAGTTAAATCTCGAAAAG 58.710 33.333 0.00 0.00 0.00 2.27
234 235 6.435428 TGGTCAAAGTTAAATCTCGAAAAGC 58.565 36.000 0.00 0.00 0.00 3.51
235 236 5.564127 GGTCAAAGTTAAATCTCGAAAAGCG 59.436 40.000 0.00 0.00 42.69 4.68
236 237 6.134061 GTCAAAGTTAAATCTCGAAAAGCGT 58.866 36.000 0.00 0.00 41.80 5.07
237 238 6.300200 GTCAAAGTTAAATCTCGAAAAGCGTC 59.700 38.462 0.00 0.00 41.80 5.19
238 239 6.202188 TCAAAGTTAAATCTCGAAAAGCGTCT 59.798 34.615 0.00 0.00 41.80 4.18
239 240 5.517037 AGTTAAATCTCGAAAAGCGTCTG 57.483 39.130 0.00 0.00 41.80 3.51
240 241 2.882742 AAATCTCGAAAAGCGTCTGC 57.117 45.000 0.00 0.00 41.80 4.26
241 242 1.795768 AATCTCGAAAAGCGTCTGCA 58.204 45.000 0.00 0.00 46.23 4.41
242 243 1.071605 ATCTCGAAAAGCGTCTGCAC 58.928 50.000 0.00 0.00 46.23 4.57
243 244 0.944311 TCTCGAAAAGCGTCTGCACC 60.944 55.000 0.00 0.00 46.23 5.01
244 245 0.946221 CTCGAAAAGCGTCTGCACCT 60.946 55.000 0.00 0.00 46.23 4.00
245 246 0.531974 TCGAAAAGCGTCTGCACCTT 60.532 50.000 0.00 0.00 46.23 3.50
246 247 1.144969 CGAAAAGCGTCTGCACCTTA 58.855 50.000 0.00 0.00 46.23 2.69
247 248 1.732259 CGAAAAGCGTCTGCACCTTAT 59.268 47.619 0.00 0.00 46.23 1.73
248 249 2.927477 CGAAAAGCGTCTGCACCTTATA 59.073 45.455 0.00 0.00 46.23 0.98
249 250 3.555956 CGAAAAGCGTCTGCACCTTATAT 59.444 43.478 0.00 0.00 46.23 0.86
250 251 4.034048 CGAAAAGCGTCTGCACCTTATATT 59.966 41.667 0.00 0.00 46.23 1.28
251 252 5.485662 AAAAGCGTCTGCACCTTATATTC 57.514 39.130 0.00 0.00 46.23 1.75
252 253 3.819564 AGCGTCTGCACCTTATATTCA 57.180 42.857 0.00 0.00 46.23 2.57
253 254 3.722147 AGCGTCTGCACCTTATATTCAG 58.278 45.455 0.00 0.00 46.23 3.02
254 255 2.802816 GCGTCTGCACCTTATATTCAGG 59.197 50.000 0.01 0.01 42.15 3.86
255 256 3.492656 GCGTCTGCACCTTATATTCAGGA 60.493 47.826 7.49 0.00 42.15 3.86
256 257 4.693283 CGTCTGCACCTTATATTCAGGAA 58.307 43.478 7.49 0.00 35.14 3.36
257 258 5.300752 CGTCTGCACCTTATATTCAGGAAT 58.699 41.667 7.49 0.00 35.14 3.01
258 259 5.178252 CGTCTGCACCTTATATTCAGGAATG 59.822 44.000 4.81 0.00 35.14 2.67
259 260 5.471456 GTCTGCACCTTATATTCAGGAATGG 59.529 44.000 4.81 0.44 35.14 3.16
260 261 5.132648 TCTGCACCTTATATTCAGGAATGGT 59.867 40.000 4.81 1.03 35.14 3.55
261 262 5.132502 TGCACCTTATATTCAGGAATGGTG 58.867 41.667 18.04 18.04 40.88 4.17
262 263 4.520492 GCACCTTATATTCAGGAATGGTGG 59.480 45.833 21.24 13.29 39.54 4.61
263 264 5.072741 CACCTTATATTCAGGAATGGTGGG 58.927 45.833 15.97 10.57 37.43 4.61
264 265 4.981647 ACCTTATATTCAGGAATGGTGGGA 59.018 41.667 4.81 0.00 35.14 4.37
265 266 5.616986 ACCTTATATTCAGGAATGGTGGGAT 59.383 40.000 4.81 0.00 35.14 3.85
266 267 6.797540 ACCTTATATTCAGGAATGGTGGGATA 59.202 38.462 4.81 0.00 35.14 2.59
267 268 7.465563 ACCTTATATTCAGGAATGGTGGGATAT 59.534 37.037 4.81 0.00 35.14 1.63
268 269 7.776969 CCTTATATTCAGGAATGGTGGGATATG 59.223 40.741 4.81 0.00 32.41 1.78
269 270 3.882102 TTCAGGAATGGTGGGATATGG 57.118 47.619 0.00 0.00 0.00 2.74
270 271 2.787956 TCAGGAATGGTGGGATATGGT 58.212 47.619 0.00 0.00 0.00 3.55
271 272 2.442878 TCAGGAATGGTGGGATATGGTG 59.557 50.000 0.00 0.00 0.00 4.17
272 273 1.782752 AGGAATGGTGGGATATGGTGG 59.217 52.381 0.00 0.00 0.00 4.61
273 274 1.780309 GGAATGGTGGGATATGGTGGA 59.220 52.381 0.00 0.00 0.00 4.02
274 275 2.176798 GGAATGGTGGGATATGGTGGAA 59.823 50.000 0.00 0.00 0.00 3.53
275 276 3.181418 GGAATGGTGGGATATGGTGGAAT 60.181 47.826 0.00 0.00 0.00 3.01
276 277 4.044065 GGAATGGTGGGATATGGTGGAATA 59.956 45.833 0.00 0.00 0.00 1.75
277 278 5.458948 GGAATGGTGGGATATGGTGGAATAA 60.459 44.000 0.00 0.00 0.00 1.40
278 279 4.447138 TGGTGGGATATGGTGGAATAAC 57.553 45.455 0.00 0.00 0.00 1.89
279 280 4.051478 TGGTGGGATATGGTGGAATAACT 58.949 43.478 0.00 0.00 0.00 2.24
280 281 4.104102 TGGTGGGATATGGTGGAATAACTC 59.896 45.833 0.00 0.00 0.00 3.01
281 282 4.506802 GGTGGGATATGGTGGAATAACTCC 60.507 50.000 0.00 0.00 45.64 3.85
282 283 3.655777 TGGGATATGGTGGAATAACTCCC 59.344 47.826 0.00 0.00 44.69 4.30
283 284 3.307480 GGGATATGGTGGAATAACTCCCG 60.307 52.174 0.00 0.00 44.69 5.14
284 285 3.307480 GGATATGGTGGAATAACTCCCGG 60.307 52.174 0.00 0.00 44.69 5.73
285 286 1.887797 ATGGTGGAATAACTCCCGGA 58.112 50.000 0.73 0.00 44.69 5.14
286 287 1.887797 TGGTGGAATAACTCCCGGAT 58.112 50.000 0.73 0.00 44.69 4.18
287 288 3.049108 TGGTGGAATAACTCCCGGATA 57.951 47.619 0.73 0.00 44.69 2.59
288 289 3.386063 TGGTGGAATAACTCCCGGATAA 58.614 45.455 0.73 0.00 44.69 1.75
289 290 3.781407 TGGTGGAATAACTCCCGGATAAA 59.219 43.478 0.73 0.00 44.69 1.40
290 291 4.414182 TGGTGGAATAACTCCCGGATAAAT 59.586 41.667 0.73 0.00 44.69 1.40
291 292 5.607592 TGGTGGAATAACTCCCGGATAAATA 59.392 40.000 0.73 0.00 44.69 1.40
292 293 6.273730 TGGTGGAATAACTCCCGGATAAATAT 59.726 38.462 0.73 0.00 44.69 1.28
293 294 7.173032 GGTGGAATAACTCCCGGATAAATATT 58.827 38.462 0.73 0.88 44.69 1.28
294 295 7.336176 GGTGGAATAACTCCCGGATAAATATTC 59.664 40.741 0.73 10.26 44.69 1.75
295 296 7.336176 GTGGAATAACTCCCGGATAAATATTCC 59.664 40.741 24.21 24.21 44.69 3.01
296 297 6.537660 GGAATAACTCCCGGATAAATATTCCG 59.462 42.308 20.30 7.26 45.65 4.30
297 298 4.968971 AACTCCCGGATAAATATTCCGT 57.031 40.909 0.73 0.00 44.71 4.69
298 299 4.968971 ACTCCCGGATAAATATTCCGTT 57.031 40.909 0.73 0.00 44.71 4.44
299 300 5.300411 ACTCCCGGATAAATATTCCGTTT 57.700 39.130 0.73 0.00 44.71 3.60
300 301 5.061179 ACTCCCGGATAAATATTCCGTTTG 58.939 41.667 0.73 5.34 44.71 2.93
301 302 5.163280 ACTCCCGGATAAATATTCCGTTTGA 60.163 40.000 0.73 6.11 44.71 2.69
302 303 5.682659 TCCCGGATAAATATTCCGTTTGAA 58.317 37.500 0.73 0.00 44.71 2.69
303 304 5.528320 TCCCGGATAAATATTCCGTTTGAAC 59.472 40.000 0.73 0.00 44.71 3.18
304 305 5.297278 CCCGGATAAATATTCCGTTTGAACA 59.703 40.000 0.73 0.00 44.71 3.18
305 306 6.183360 CCCGGATAAATATTCCGTTTGAACAA 60.183 38.462 0.73 0.00 44.71 2.83
306 307 6.689669 CCGGATAAATATTCCGTTTGAACAAC 59.310 38.462 12.21 0.00 44.71 3.32
307 308 7.244898 CGGATAAATATTCCGTTTGAACAACA 58.755 34.615 6.22 0.00 41.62 3.33
308 309 7.751348 CGGATAAATATTCCGTTTGAACAACAA 59.249 33.333 6.22 0.00 41.62 2.83
309 310 9.413048 GGATAAATATTCCGTTTGAACAACAAA 57.587 29.630 0.00 0.00 44.79 2.83
321 322 6.698359 TTGAACAACAAAGTGCACTAAAAC 57.302 33.333 22.01 7.24 35.39 2.43
335 336 7.222611 AGTGCACTAAAACACAATGAAACATTC 59.777 33.333 20.16 0.00 39.30 2.67
340 341 6.907206 AAAACACAATGAAACATTCTGGTG 57.093 33.333 0.00 0.00 34.35 4.17
344 345 5.360714 ACACAATGAAACATTCTGGTGAACT 59.639 36.000 15.22 0.00 34.71 3.01
347 348 4.163441 TGAAACATTCTGGTGAACTCCA 57.837 40.909 0.00 0.00 34.71 3.86
348 349 4.531854 TGAAACATTCTGGTGAACTCCAA 58.468 39.130 0.00 0.00 37.01 3.53
351 352 5.520376 AACATTCTGGTGAACTCCAAAAG 57.480 39.130 0.00 0.00 37.01 2.27
369 370 5.767168 CCAAAAGAGAGTGAACCTTGAGAAT 59.233 40.000 0.00 0.00 0.00 2.40
370 371 6.293845 CCAAAAGAGAGTGAACCTTGAGAATG 60.294 42.308 0.00 0.00 0.00 2.67
376 377 7.442666 AGAGAGTGAACCTTGAGAATGTTAAAC 59.557 37.037 0.00 0.00 0.00 2.01
384 385 9.665719 AACCTTGAGAATGTTAAACAAAAATGT 57.334 25.926 0.00 0.00 0.00 2.71
545 547 9.803315 AAAACATTTTTCTTAGAAACAGAGGAC 57.197 29.630 6.93 0.00 0.00 3.85
558 560 2.529389 AGGACAACTCCCGGCCTT 60.529 61.111 0.00 0.00 37.25 4.35
561 563 2.597510 ACAACTCCCGGCCTTTGC 60.598 61.111 0.00 0.00 0.00 3.68
567 569 1.450531 CTCCCGGCCTTTGCATCATC 61.451 60.000 0.00 0.00 40.13 2.92
572 574 0.099436 GGCCTTTGCATCATCGTGAC 59.901 55.000 0.00 0.00 40.13 3.67
573 575 1.089920 GCCTTTGCATCATCGTGACT 58.910 50.000 0.00 0.00 37.47 3.41
574 576 1.202110 GCCTTTGCATCATCGTGACTG 60.202 52.381 0.00 0.00 37.47 3.51
580 588 2.212652 GCATCATCGTGACTGCCAATA 58.787 47.619 9.20 0.00 30.27 1.90
584 592 3.937814 TCATCGTGACTGCCAATACTTT 58.062 40.909 0.00 0.00 0.00 2.66
585 593 5.079689 TCATCGTGACTGCCAATACTTTA 57.920 39.130 0.00 0.00 0.00 1.85
610 618 7.912778 AAACATTATTAGCCACCCATATTGT 57.087 32.000 0.00 0.00 0.00 2.71
611 619 6.899393 ACATTATTAGCCACCCATATTGTG 57.101 37.500 0.00 0.00 0.00 3.33
613 621 7.522542 ACATTATTAGCCACCCATATTGTGTA 58.477 34.615 2.40 0.00 31.71 2.90
614 622 7.447238 ACATTATTAGCCACCCATATTGTGTAC 59.553 37.037 2.40 0.00 31.71 2.90
615 623 4.846168 TTAGCCACCCATATTGTGTACA 57.154 40.909 0.00 0.00 31.71 2.90
616 624 3.281727 AGCCACCCATATTGTGTACAG 57.718 47.619 0.00 0.00 31.71 2.74
617 625 2.843730 AGCCACCCATATTGTGTACAGA 59.156 45.455 0.00 0.00 31.71 3.41
678 699 2.245438 GAGAGTGGTGGGCTAGTGGC 62.245 65.000 0.00 0.00 40.90 5.01
687 708 4.051932 GCTAGTGGCCTAGTGGGT 57.948 61.111 3.32 0.00 42.35 4.51
711 732 3.626924 AGTGGGCAGGACCGTGTC 61.627 66.667 0.00 0.00 40.62 3.67
712 733 3.936203 GTGGGCAGGACCGTGTCA 61.936 66.667 6.41 0.00 40.62 3.58
714 735 2.351276 GGGCAGGACCGTGTCATT 59.649 61.111 6.41 0.00 40.62 2.57
715 736 1.303317 GGGCAGGACCGTGTCATTT 60.303 57.895 6.41 0.00 40.62 2.32
716 737 1.305930 GGGCAGGACCGTGTCATTTC 61.306 60.000 6.41 0.00 40.62 2.17
717 738 0.605319 GGCAGGACCGTGTCATTTCA 60.605 55.000 6.41 0.00 33.68 2.69
718 739 1.453155 GCAGGACCGTGTCATTTCAT 58.547 50.000 6.41 0.00 33.68 2.57
719 740 2.627945 GCAGGACCGTGTCATTTCATA 58.372 47.619 6.41 0.00 33.68 2.15
720 741 3.006940 GCAGGACCGTGTCATTTCATAA 58.993 45.455 6.41 0.00 33.68 1.90
721 742 3.181510 GCAGGACCGTGTCATTTCATAAC 60.182 47.826 6.41 0.00 33.68 1.89
723 744 4.695455 CAGGACCGTGTCATTTCATAACTT 59.305 41.667 6.41 0.00 33.68 2.66
726 747 5.640357 GGACCGTGTCATTTCATAACTTACA 59.360 40.000 6.41 0.00 33.68 2.41
728 749 7.148306 GGACCGTGTCATTTCATAACTTACATT 60.148 37.037 6.41 0.00 33.68 2.71
729 750 8.780846 ACCGTGTCATTTCATAACTTACATTA 57.219 30.769 0.00 0.00 0.00 1.90
730 751 8.662141 ACCGTGTCATTTCATAACTTACATTAC 58.338 33.333 0.00 0.00 0.00 1.89
741 762 9.929180 TCATAACTTACATTACATAGCCATCTC 57.071 33.333 0.00 0.00 0.00 2.75
743 764 5.784177 ACTTACATTACATAGCCATCTCGG 58.216 41.667 0.00 0.00 38.11 4.63
754 775 1.689243 CCATCTCGGCATCTCCCACA 61.689 60.000 0.00 0.00 0.00 4.17
773 794 4.819769 CACAAGGGGTGGAAACAAATATG 58.180 43.478 0.00 0.00 46.06 1.78
774 795 4.526262 CACAAGGGGTGGAAACAAATATGA 59.474 41.667 0.00 0.00 46.06 2.15
775 796 5.187576 CACAAGGGGTGGAAACAAATATGAT 59.812 40.000 0.00 0.00 46.06 2.45
778 799 7.069826 ACAAGGGGTGGAAACAAATATGATATG 59.930 37.037 0.00 0.00 46.06 1.78
779 800 5.539955 AGGGGTGGAAACAAATATGATATGC 59.460 40.000 0.00 0.00 46.06 3.14
784 805 8.575589 GGTGGAAACAAATATGATATGCATGTA 58.424 33.333 10.16 0.00 46.06 2.29
827 848 6.150318 CAGAAGGAGAAAATGATATGCATGC 58.850 40.000 11.82 11.82 37.28 4.06
829 850 5.449107 AGGAGAAAATGATATGCATGCAC 57.551 39.130 25.37 11.49 37.28 4.57
832 853 5.919141 GGAGAAAATGATATGCATGCACTTC 59.081 40.000 25.37 21.92 37.28 3.01
848 869 3.125573 TCGAGGCACGAGTCCGAG 61.126 66.667 2.07 0.00 46.45 4.63
857 878 2.002586 CACGAGTCCGAGCAATTGAAT 58.997 47.619 10.34 0.00 39.50 2.57
858 879 2.416547 CACGAGTCCGAGCAATTGAATT 59.583 45.455 10.34 0.00 39.50 2.17
866 887 5.007034 TCCGAGCAATTGAATTAAAGGTGA 58.993 37.500 10.34 0.00 0.00 4.02
867 888 5.095490 CCGAGCAATTGAATTAAAGGTGAC 58.905 41.667 10.34 0.00 0.00 3.67
869 890 6.093495 CCGAGCAATTGAATTAAAGGTGACTA 59.907 38.462 10.34 0.00 42.68 2.59
875 896 5.794687 TGAATTAAAGGTGACTACATGCG 57.205 39.130 0.00 0.00 42.68 4.73
880 901 0.973632 AGGTGACTACATGCGTTGGA 59.026 50.000 0.00 0.00 40.61 3.53
882 903 2.027192 AGGTGACTACATGCGTTGGATT 60.027 45.455 0.00 0.00 40.61 3.01
896 917 4.520492 GCGTTGGATTTGATGGATAATCCT 59.480 41.667 13.30 0.00 46.48 3.24
898 919 5.106948 CGTTGGATTTGATGGATAATCCTCG 60.107 44.000 13.30 13.11 46.48 4.63
899 920 5.567037 TGGATTTGATGGATAATCCTCGT 57.433 39.130 13.30 0.00 46.48 4.18
900 921 5.308014 TGGATTTGATGGATAATCCTCGTG 58.692 41.667 13.30 0.00 46.48 4.35
901 922 5.071653 TGGATTTGATGGATAATCCTCGTGA 59.928 40.000 13.30 0.00 46.48 4.35
902 923 5.997746 GGATTTGATGGATAATCCTCGTGAA 59.002 40.000 2.11 0.00 44.14 3.18
903 924 6.073003 GGATTTGATGGATAATCCTCGTGAAC 60.073 42.308 2.11 0.00 44.14 3.18
906 927 3.159353 TGGATAATCCTCGTGAACACG 57.841 47.619 19.22 19.22 44.44 4.49
907 928 2.494471 TGGATAATCCTCGTGAACACGT 59.506 45.455 23.07 9.33 43.93 4.49
908 929 3.674955 TGGATAATCCTCGTGAACACGTG 60.675 47.826 23.07 15.48 43.93 4.49
928 949 2.320805 CATATAGGCATGCACGCAAC 57.679 50.000 21.36 0.00 0.00 4.17
929 950 1.875514 CATATAGGCATGCACGCAACT 59.124 47.619 21.36 8.59 0.00 3.16
931 952 1.586422 ATAGGCATGCACGCAACTAG 58.414 50.000 21.36 0.00 0.00 2.57
932 953 0.534873 TAGGCATGCACGCAACTAGA 59.465 50.000 21.36 0.00 0.00 2.43
933 954 0.321564 AGGCATGCACGCAACTAGAA 60.322 50.000 21.36 0.00 0.00 2.10
934 955 0.097674 GGCATGCACGCAACTAGAAG 59.902 55.000 21.36 0.00 0.00 2.85
936 957 1.464608 GCATGCACGCAACTAGAAGAA 59.535 47.619 14.21 0.00 0.00 2.52
937 958 2.726066 GCATGCACGCAACTAGAAGAAC 60.726 50.000 14.21 0.00 0.00 3.01
946 968 4.083855 CGCAACTAGAAGAACAAATGCAGA 60.084 41.667 0.00 0.00 33.00 4.26
1247 1276 0.541998 TCCTTTGAGGAGTGCGAGGA 60.542 55.000 0.00 0.00 40.06 3.71
1639 1668 1.594517 CGCATGATTGTTCGTGTGTG 58.405 50.000 0.00 0.00 42.10 3.82
1645 1674 0.944386 ATTGTTCGTGTGTGTGGAGC 59.056 50.000 0.00 0.00 0.00 4.70
1647 1676 0.809636 TGTTCGTGTGTGTGGAGCTG 60.810 55.000 0.00 0.00 0.00 4.24
1656 1685 1.016130 GTGTGGAGCTGGTGACGATG 61.016 60.000 0.00 0.00 0.00 3.84
1659 1689 0.461548 TGGAGCTGGTGACGATGATC 59.538 55.000 0.00 0.00 0.00 2.92
1668 1698 4.744570 TGGTGACGATGATCTAGTGTTTC 58.255 43.478 0.00 0.00 0.00 2.78
1674 1704 6.873605 TGACGATGATCTAGTGTTTCATGTTT 59.126 34.615 0.00 0.00 30.48 2.83
1677 1707 5.627499 TGATCTAGTGTTTCATGTTTGGC 57.373 39.130 0.00 0.00 0.00 4.52
1689 1719 3.527641 TTTGGCGTGACCCAAACC 58.472 55.556 12.30 0.00 46.84 3.27
1690 1720 1.076632 TTTGGCGTGACCCAAACCT 60.077 52.632 12.30 0.00 46.84 3.50
1706 1736 1.113788 ACCTTTTGTGTGCTGCATGT 58.886 45.000 5.27 0.00 0.00 3.21
1726 1756 3.252215 TGTTTCGTACATTTGCCCTTCTG 59.748 43.478 0.00 0.00 0.00 3.02
1743 1774 5.012046 CCCTTCTGGCAAAAAGAAATTACCT 59.988 40.000 10.08 0.00 33.40 3.08
1755 1786 6.901081 AAGAAATTACCTGCTTTAAGCTGT 57.099 33.333 18.20 16.17 42.97 4.40
1757 1788 5.416013 AGAAATTACCTGCTTTAAGCTGTCC 59.584 40.000 18.20 4.28 42.97 4.02
1767 1798 5.358442 TGCTTTAAGCTGTCCAAAAGTACAA 59.642 36.000 18.20 0.00 42.97 2.41
1776 1807 5.626142 TGTCCAAAAGTACAATTGCCTCTA 58.374 37.500 5.05 0.00 0.00 2.43
1780 1811 7.755373 GTCCAAAAGTACAATTGCCTCTATTTC 59.245 37.037 5.05 0.00 0.00 2.17
1811 1845 5.006649 TGTTTCATGACAACTTGTTCGAGAG 59.993 40.000 16.46 0.00 0.00 3.20
1813 1847 4.299155 TCATGACAACTTGTTCGAGAGTC 58.701 43.478 0.00 0.00 0.00 3.36
1819 1856 4.023021 ACAACTTGTTCGAGAGTCCTAGTC 60.023 45.833 0.00 0.00 0.00 2.59
1820 1857 4.023726 ACTTGTTCGAGAGTCCTAGTCT 57.976 45.455 0.00 0.00 0.00 3.24
1823 1860 2.305052 TGTTCGAGAGTCCTAGTCTCCA 59.695 50.000 6.25 0.00 40.70 3.86
1831 1868 3.942115 GAGTCCTAGTCTCCAAAAATGCC 59.058 47.826 0.00 0.00 0.00 4.40
1837 1874 2.293399 AGTCTCCAAAAATGCCGTTGAC 59.707 45.455 0.00 0.00 0.00 3.18
1838 1875 1.611491 TCTCCAAAAATGCCGTTGACC 59.389 47.619 0.00 0.00 0.00 4.02
1843 1880 3.002144 CCAAAAATGCCGTTGACCTTTTG 59.998 43.478 0.00 0.00 34.87 2.44
1844 1881 1.864565 AAATGCCGTTGACCTTTTGC 58.135 45.000 0.00 0.00 0.00 3.68
1845 1882 0.033366 AATGCCGTTGACCTTTTGCC 59.967 50.000 0.00 0.00 0.00 4.52
1846 1883 1.815817 ATGCCGTTGACCTTTTGCCC 61.816 55.000 0.00 0.00 0.00 5.36
1877 1914 0.321122 CACAGACAGTTGGGAGCTCC 60.321 60.000 25.59 25.59 0.00 4.70
1889 1926 0.250513 GGAGCTCCACACCTCGAAAT 59.749 55.000 28.43 0.00 35.64 2.17
1892 1929 0.321653 GCTCCACACCTCGAAATGGT 60.322 55.000 1.06 0.00 38.53 3.55
1916 1953 4.657039 AGTCCCCTTTACTTGTGAGTACAA 59.343 41.667 0.00 0.00 44.17 2.41
1919 1956 6.017357 GTCCCCTTTACTTGTGAGTACAAAAG 60.017 42.308 0.00 0.00 45.53 2.27
1956 1993 7.208225 TCATATTTTCGGTTGATGTTTGTGA 57.792 32.000 0.00 0.00 0.00 3.58
1960 1997 4.655440 TTCGGTTGATGTTTGTGATACG 57.345 40.909 0.00 0.00 0.00 3.06
1961 1998 3.655486 TCGGTTGATGTTTGTGATACGT 58.345 40.909 0.00 0.00 0.00 3.57
1973 2010 9.720667 ATGTTTGTGATACGTATTGATGAATTG 57.279 29.630 9.92 0.00 0.00 2.32
1984 2021 1.933181 TGATGAATTGCGGTCGATGTC 59.067 47.619 0.00 0.00 0.00 3.06
1996 2033 1.339610 GTCGATGTCTAGGCTGAGCAT 59.660 52.381 6.82 0.11 0.00 3.79
2002 2039 4.551702 TGTCTAGGCTGAGCATTGTAAA 57.448 40.909 6.82 0.00 0.00 2.01
2003 2040 5.102953 TGTCTAGGCTGAGCATTGTAAAT 57.897 39.130 6.82 0.00 0.00 1.40
2011 2048 5.464168 GCTGAGCATTGTAAATGAACTGTT 58.536 37.500 0.00 0.00 0.00 3.16
2012 2049 5.922544 GCTGAGCATTGTAAATGAACTGTTT 59.077 36.000 0.00 0.00 0.00 2.83
2013 2050 6.129009 GCTGAGCATTGTAAATGAACTGTTTG 60.129 38.462 0.00 0.00 0.00 2.93
2014 2051 6.804677 TGAGCATTGTAAATGAACTGTTTGT 58.195 32.000 4.18 0.00 0.00 2.83
2015 2052 7.935520 TGAGCATTGTAAATGAACTGTTTGTA 58.064 30.769 4.18 0.00 0.00 2.41
2016 2053 8.075574 TGAGCATTGTAAATGAACTGTTTGTAG 58.924 33.333 4.18 0.00 0.00 2.74
2017 2054 6.863126 AGCATTGTAAATGAACTGTTTGTAGC 59.137 34.615 4.18 0.00 0.00 3.58
2018 2055 6.089417 GCATTGTAAATGAACTGTTTGTAGCC 59.911 38.462 4.18 0.00 0.00 3.93
2025 2062 5.499139 TGAACTGTTTGTAGCCTCAAAAG 57.501 39.130 5.65 7.97 38.71 2.27
2026 2063 3.990318 ACTGTTTGTAGCCTCAAAAGC 57.010 42.857 5.65 0.00 38.71 3.51
2029 2066 4.757149 ACTGTTTGTAGCCTCAAAAGCTAG 59.243 41.667 5.65 0.00 43.26 3.42
2047 2084 3.243334 GCTAGCTCAAAATTCCATGCTCC 60.243 47.826 7.70 0.00 32.72 4.70
2049 2086 3.167485 AGCTCAAAATTCCATGCTCCAA 58.833 40.909 0.00 0.00 0.00 3.53
2050 2087 3.194968 AGCTCAAAATTCCATGCTCCAAG 59.805 43.478 0.00 0.00 0.00 3.61
2051 2088 3.677976 GCTCAAAATTCCATGCTCCAAGG 60.678 47.826 0.00 0.00 0.00 3.61
2052 2089 3.509442 TCAAAATTCCATGCTCCAAGGT 58.491 40.909 0.00 0.00 0.00 3.50
2054 2091 5.083122 TCAAAATTCCATGCTCCAAGGTAA 58.917 37.500 0.00 0.00 0.00 2.85
2055 2092 5.185635 TCAAAATTCCATGCTCCAAGGTAAG 59.814 40.000 0.00 0.00 0.00 2.34
2056 2093 4.591321 AATTCCATGCTCCAAGGTAAGA 57.409 40.909 0.00 0.00 0.00 2.10
2057 2094 4.591321 ATTCCATGCTCCAAGGTAAGAA 57.409 40.909 0.00 0.00 0.00 2.52
2059 2096 4.591321 TCCATGCTCCAAGGTAAGAATT 57.409 40.909 0.00 0.00 0.00 2.17
2062 2099 3.366052 TGCTCCAAGGTAAGAATTCCC 57.634 47.619 0.65 0.00 0.00 3.97
2063 2100 2.289565 GCTCCAAGGTAAGAATTCCCG 58.710 52.381 0.65 0.00 0.00 5.14
2064 2101 2.355818 GCTCCAAGGTAAGAATTCCCGT 60.356 50.000 0.65 0.00 0.00 5.28
2065 2102 3.872630 GCTCCAAGGTAAGAATTCCCGTT 60.873 47.826 0.65 0.00 0.00 4.44
2066 2103 3.681593 TCCAAGGTAAGAATTCCCGTTG 58.318 45.455 0.65 8.45 0.00 4.10
2068 2105 3.824443 CCAAGGTAAGAATTCCCGTTGTT 59.176 43.478 0.65 0.00 0.00 2.83
2069 2106 4.320935 CCAAGGTAAGAATTCCCGTTGTTG 60.321 45.833 0.65 0.02 0.00 3.33
2070 2107 4.360951 AGGTAAGAATTCCCGTTGTTGA 57.639 40.909 0.65 0.00 0.00 3.18
2071 2108 4.918588 AGGTAAGAATTCCCGTTGTTGAT 58.081 39.130 0.65 0.00 0.00 2.57
2072 2109 5.321927 AGGTAAGAATTCCCGTTGTTGATT 58.678 37.500 0.65 0.00 0.00 2.57
2073 2110 5.773176 AGGTAAGAATTCCCGTTGTTGATTT 59.227 36.000 0.65 0.00 0.00 2.17
2074 2111 6.943718 AGGTAAGAATTCCCGTTGTTGATTTA 59.056 34.615 0.65 0.00 0.00 1.40
2075 2112 7.120726 AGGTAAGAATTCCCGTTGTTGATTTAG 59.879 37.037 0.65 0.00 0.00 1.85
2076 2113 6.894339 AAGAATTCCCGTTGTTGATTTAGT 57.106 33.333 0.65 0.00 0.00 2.24
2077 2114 6.894339 AGAATTCCCGTTGTTGATTTAGTT 57.106 33.333 0.65 0.00 0.00 2.24
2078 2115 7.989416 AGAATTCCCGTTGTTGATTTAGTTA 57.011 32.000 0.65 0.00 0.00 2.24
2079 2116 8.575649 AGAATTCCCGTTGTTGATTTAGTTAT 57.424 30.769 0.65 0.00 0.00 1.89
2080 2117 9.020731 AGAATTCCCGTTGTTGATTTAGTTATT 57.979 29.630 0.65 0.00 0.00 1.40
2081 2118 9.285770 GAATTCCCGTTGTTGATTTAGTTATTC 57.714 33.333 0.00 0.00 0.00 1.75
2082 2119 6.411630 TCCCGTTGTTGATTTAGTTATTCG 57.588 37.500 0.00 0.00 0.00 3.34
2083 2120 5.933463 TCCCGTTGTTGATTTAGTTATTCGT 59.067 36.000 0.00 0.00 0.00 3.85
2084 2121 6.427547 TCCCGTTGTTGATTTAGTTATTCGTT 59.572 34.615 0.00 0.00 0.00 3.85
2085 2122 7.041235 TCCCGTTGTTGATTTAGTTATTCGTTT 60.041 33.333 0.00 0.00 0.00 3.60
2168 2208 4.003648 AGAATCCAGTACAAGCCGAAAAG 58.996 43.478 0.00 0.00 0.00 2.27
2171 2211 4.811969 TCCAGTACAAGCCGAAAAGATA 57.188 40.909 0.00 0.00 0.00 1.98
2176 2216 4.572389 AGTACAAGCCGAAAAGATAGCATG 59.428 41.667 0.00 0.00 0.00 4.06
2184 2224 4.858692 CCGAAAAGATAGCATGTTTGTTGG 59.141 41.667 0.00 0.00 0.00 3.77
2187 2227 6.808212 CGAAAAGATAGCATGTTTGTTGGAAT 59.192 34.615 0.00 0.00 0.00 3.01
2188 2228 7.201376 CGAAAAGATAGCATGTTTGTTGGAATG 60.201 37.037 0.00 0.00 0.00 2.67
2193 2233 7.933033 AGATAGCATGTTTGTTGGAATGTTTTT 59.067 29.630 0.00 0.00 0.00 1.94
2194 2234 6.121613 AGCATGTTTGTTGGAATGTTTTTG 57.878 33.333 0.00 0.00 0.00 2.44
2195 2235 4.734370 GCATGTTTGTTGGAATGTTTTTGC 59.266 37.500 0.00 0.00 0.00 3.68
2196 2236 4.954092 TGTTTGTTGGAATGTTTTTGCC 57.046 36.364 0.00 0.00 0.00 4.52
2199 2239 3.616956 TGTTGGAATGTTTTTGCCACA 57.383 38.095 0.00 0.00 0.00 4.17
2208 2248 3.182967 TGTTTTTGCCACACGTGAATTC 58.817 40.909 25.01 8.62 0.00 2.17
2209 2249 3.182967 GTTTTTGCCACACGTGAATTCA 58.817 40.909 25.01 3.38 0.00 2.57
2220 2260 2.095263 ACGTGAATTCAAGCCCAAATCG 60.095 45.455 19.55 13.13 0.00 3.34
2233 2273 7.717436 TCAAGCCCAAATCGAAATATATGTGTA 59.283 33.333 0.00 0.00 0.00 2.90
2234 2274 8.349245 CAAGCCCAAATCGAAATATATGTGTAA 58.651 33.333 0.00 0.00 0.00 2.41
2235 2275 8.099364 AGCCCAAATCGAAATATATGTGTAAG 57.901 34.615 0.00 0.00 0.00 2.34
2236 2276 7.936847 AGCCCAAATCGAAATATATGTGTAAGA 59.063 33.333 0.00 0.00 0.00 2.10
2248 2288 9.601810 AATATATGTGTAAGAGTATCCACCTCA 57.398 33.333 0.00 0.00 33.66 3.86
2249 2289 9.775539 ATATATGTGTAAGAGTATCCACCTCAT 57.224 33.333 0.00 0.00 33.66 2.90
2251 2291 6.961360 TGTGTAAGAGTATCCACCTCATAG 57.039 41.667 0.00 0.00 33.66 2.23
2252 2292 6.669631 TGTGTAAGAGTATCCACCTCATAGA 58.330 40.000 0.00 0.00 33.66 1.98
2253 2293 7.123383 TGTGTAAGAGTATCCACCTCATAGAA 58.877 38.462 0.00 0.00 33.66 2.10
2254 2294 7.285629 TGTGTAAGAGTATCCACCTCATAGAAG 59.714 40.741 0.00 0.00 33.66 2.85
2255 2295 7.285858 GTGTAAGAGTATCCACCTCATAGAAGT 59.714 40.741 0.00 0.00 33.66 3.01
2256 2296 6.969993 AAGAGTATCCACCTCATAGAAGTC 57.030 41.667 0.00 0.00 33.66 3.01
2259 2299 3.715648 ATCCACCTCATAGAAGTCCCT 57.284 47.619 0.00 0.00 0.00 4.20
2264 2304 1.604755 CCTCATAGAAGTCCCTCGTCG 59.395 57.143 0.00 0.00 0.00 5.12
2266 2306 0.738975 CATAGAAGTCCCTCGTCGCA 59.261 55.000 0.00 0.00 0.00 5.10
2273 2313 2.055633 TCCCTCGTCGCATTAGGCA 61.056 57.895 0.00 0.00 45.17 4.75
2275 2315 1.429148 CCCTCGTCGCATTAGGCAAC 61.429 60.000 0.00 0.00 45.17 4.17
2280 2320 2.825086 GTCGCATTAGGCAACGATTT 57.175 45.000 0.00 0.00 45.17 2.17
2281 2321 2.440501 GTCGCATTAGGCAACGATTTG 58.559 47.619 0.00 0.00 45.17 2.32
2282 2322 2.080693 TCGCATTAGGCAACGATTTGT 58.919 42.857 0.00 0.00 45.17 2.83
2287 2327 4.615912 GCATTAGGCAACGATTTGTGACTT 60.616 41.667 0.00 0.00 43.97 3.01
2288 2328 5.391523 GCATTAGGCAACGATTTGTGACTTA 60.392 40.000 0.00 0.00 43.97 2.24
2290 2332 4.483476 AGGCAACGATTTGTGACTTAAC 57.517 40.909 0.00 0.00 46.39 2.01
2292 2334 4.578928 AGGCAACGATTTGTGACTTAACTT 59.421 37.500 0.00 0.00 46.39 2.66
2325 2368 6.652205 ATGAAGAAATTAGGTACCCCTTGA 57.348 37.500 8.74 0.00 42.66 3.02
2335 2378 1.142262 GTACCCCTTGACACACTTGGT 59.858 52.381 0.00 0.00 0.00 3.67
2337 2380 0.182537 CCCCTTGACACACTTGGTCA 59.817 55.000 0.00 0.00 43.12 4.02
2346 2389 4.161565 TGACACACTTGGTCACTCTTAACT 59.838 41.667 0.00 0.00 40.16 2.24
2348 2391 5.497474 ACACACTTGGTCACTCTTAACTTT 58.503 37.500 0.00 0.00 0.00 2.66
2350 2393 6.433093 ACACACTTGGTCACTCTTAACTTTTT 59.567 34.615 0.00 0.00 0.00 1.94
2354 2397 8.190784 CACTTGGTCACTCTTAACTTTTTGAAT 58.809 33.333 0.00 0.00 0.00 2.57
2355 2398 9.403583 ACTTGGTCACTCTTAACTTTTTGAATA 57.596 29.630 0.00 0.00 0.00 1.75
2380 2423 8.915871 AATTTGTTTCACGATTTCAGATATGG 57.084 30.769 0.00 0.00 0.00 2.74
2381 2424 7.680442 TTTGTTTCACGATTTCAGATATGGA 57.320 32.000 0.00 0.00 0.00 3.41
2382 2425 7.680442 TTGTTTCACGATTTCAGATATGGAA 57.320 32.000 0.00 0.00 0.00 3.53
2383 2426 7.680442 TGTTTCACGATTTCAGATATGGAAA 57.320 32.000 0.00 2.58 38.49 3.13
2384 2427 8.279970 TGTTTCACGATTTCAGATATGGAAAT 57.720 30.769 10.29 10.29 45.09 2.17
2385 2428 8.739039 TGTTTCACGATTTCAGATATGGAAATT 58.261 29.630 11.33 0.00 43.12 1.82
2386 2429 9.573133 GTTTCACGATTTCAGATATGGAAATTT 57.427 29.630 11.33 0.00 43.12 1.82
2396 2439 9.540538 TTCAGATATGGAAATTTTTAGGTTGGA 57.459 29.630 0.00 0.00 0.00 3.53
2397 2440 9.713684 TCAGATATGGAAATTTTTAGGTTGGAT 57.286 29.630 0.00 0.00 0.00 3.41
2508 2551 9.726232 ATCGACTTTTCTTTTACCTTTTGTAAC 57.274 29.630 0.00 0.00 39.13 2.50
2509 2552 8.183536 TCGACTTTTCTTTTACCTTTTGTAACC 58.816 33.333 0.00 0.00 39.13 2.85
2510 2553 7.164662 CGACTTTTCTTTTACCTTTTGTAACCG 59.835 37.037 0.00 0.00 39.13 4.44
2511 2554 7.259882 ACTTTTCTTTTACCTTTTGTAACCGG 58.740 34.615 0.00 0.00 39.13 5.28
2512 2555 7.122501 ACTTTTCTTTTACCTTTTGTAACCGGA 59.877 33.333 9.46 0.00 39.13 5.14
2513 2556 7.585579 TTTCTTTTACCTTTTGTAACCGGAT 57.414 32.000 9.46 0.00 39.13 4.18
2514 2557 8.688747 TTTCTTTTACCTTTTGTAACCGGATA 57.311 30.769 9.46 0.00 39.13 2.59
2515 2558 8.866970 TTCTTTTACCTTTTGTAACCGGATAT 57.133 30.769 9.46 0.00 39.13 1.63
2516 2559 8.496707 TCTTTTACCTTTTGTAACCGGATATC 57.503 34.615 9.46 0.00 39.13 1.63
2517 2560 8.323567 TCTTTTACCTTTTGTAACCGGATATCT 58.676 33.333 9.46 0.00 39.13 1.98
2518 2561 8.866970 TTTTACCTTTTGTAACCGGATATCTT 57.133 30.769 9.46 0.00 39.13 2.40
2519 2562 8.866970 TTTACCTTTTGTAACCGGATATCTTT 57.133 30.769 9.46 0.00 39.13 2.52
2520 2563 8.866970 TTACCTTTTGTAACCGGATATCTTTT 57.133 30.769 9.46 0.00 34.50 2.27
2521 2564 7.770366 ACCTTTTGTAACCGGATATCTTTTT 57.230 32.000 9.46 0.00 0.00 1.94
2599 2642 9.582431 TTGAACACTTTTCTTATAGATAGGTCG 57.418 33.333 0.00 0.00 0.00 4.79
2600 2643 8.963725 TGAACACTTTTCTTATAGATAGGTCGA 58.036 33.333 0.00 0.00 0.00 4.20
2601 2644 9.798994 GAACACTTTTCTTATAGATAGGTCGAA 57.201 33.333 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.350091 GGCTGTTGCAAGTTTAAGACAAAAA 59.650 36.000 0.00 0.00 41.91 1.94
2 3 4.867608 GGCTGTTGCAAGTTTAAGACAAAA 59.132 37.500 0.00 0.00 41.91 2.44
3 4 4.081972 TGGCTGTTGCAAGTTTAAGACAAA 60.082 37.500 0.00 0.00 41.91 2.83
4 5 3.445450 TGGCTGTTGCAAGTTTAAGACAA 59.555 39.130 0.00 0.00 41.91 3.18
5 6 3.020274 TGGCTGTTGCAAGTTTAAGACA 58.980 40.909 0.00 0.00 41.91 3.41
6 7 3.708563 TGGCTGTTGCAAGTTTAAGAC 57.291 42.857 0.00 0.00 41.91 3.01
7 8 7.880160 ATATATGGCTGTTGCAAGTTTAAGA 57.120 32.000 0.00 0.00 41.91 2.10
8 9 8.931385 AAATATATGGCTGTTGCAAGTTTAAG 57.069 30.769 0.00 0.00 41.91 1.85
9 10 7.978975 GGAAATATATGGCTGTTGCAAGTTTAA 59.021 33.333 0.00 0.00 41.91 1.52
10 11 7.341769 AGGAAATATATGGCTGTTGCAAGTTTA 59.658 33.333 0.00 0.00 41.91 2.01
11 12 6.155049 AGGAAATATATGGCTGTTGCAAGTTT 59.845 34.615 0.00 0.00 41.91 2.66
12 13 5.658190 AGGAAATATATGGCTGTTGCAAGTT 59.342 36.000 0.00 0.00 41.91 2.66
13 14 5.203528 AGGAAATATATGGCTGTTGCAAGT 58.796 37.500 0.00 0.00 41.91 3.16
14 15 5.779529 AGGAAATATATGGCTGTTGCAAG 57.220 39.130 0.00 0.00 41.91 4.01
15 16 6.070881 ACAAAGGAAATATATGGCTGTTGCAA 60.071 34.615 0.00 0.00 41.91 4.08
16 17 5.421693 ACAAAGGAAATATATGGCTGTTGCA 59.578 36.000 0.00 0.00 41.91 4.08
17 18 5.906073 ACAAAGGAAATATATGGCTGTTGC 58.094 37.500 0.00 0.00 38.76 4.17
18 19 7.775120 AGAACAAAGGAAATATATGGCTGTTG 58.225 34.615 0.00 0.00 0.00 3.33
19 20 7.201732 CGAGAACAAAGGAAATATATGGCTGTT 60.202 37.037 0.00 0.00 0.00 3.16
20 21 6.260936 CGAGAACAAAGGAAATATATGGCTGT 59.739 38.462 0.00 0.00 0.00 4.40
21 22 6.483307 TCGAGAACAAAGGAAATATATGGCTG 59.517 38.462 0.00 0.00 0.00 4.85
22 23 6.591935 TCGAGAACAAAGGAAATATATGGCT 58.408 36.000 0.00 0.00 0.00 4.75
23 24 6.861065 TCGAGAACAAAGGAAATATATGGC 57.139 37.500 0.00 0.00 0.00 4.40
39 40 3.064207 TGCACACCTTATGTTCGAGAAC 58.936 45.455 8.89 8.89 40.64 3.01
40 41 3.064207 GTGCACACCTTATGTTCGAGAA 58.936 45.455 13.17 0.00 40.64 2.87
41 42 2.683968 GTGCACACCTTATGTTCGAGA 58.316 47.619 13.17 0.00 40.64 4.04
42 43 1.390123 CGTGCACACCTTATGTTCGAG 59.610 52.381 18.64 0.00 40.64 4.04
43 44 1.424403 CGTGCACACCTTATGTTCGA 58.576 50.000 18.64 0.00 40.64 3.71
44 45 0.179225 GCGTGCACACCTTATGTTCG 60.179 55.000 18.64 0.00 40.64 3.95
45 46 1.156736 AGCGTGCACACCTTATGTTC 58.843 50.000 18.64 0.00 40.64 3.18
46 47 1.604604 AAGCGTGCACACCTTATGTT 58.395 45.000 18.64 0.00 40.64 2.71
47 48 1.604604 AAAGCGTGCACACCTTATGT 58.395 45.000 18.64 1.22 44.81 2.29
48 49 2.031245 TGAAAAGCGTGCACACCTTATG 60.031 45.455 18.64 0.00 0.00 1.90
49 50 2.226330 TGAAAAGCGTGCACACCTTAT 58.774 42.857 18.64 6.83 0.00 1.73
50 51 1.669604 TGAAAAGCGTGCACACCTTA 58.330 45.000 18.64 1.22 0.00 2.69
51 52 0.814457 TTGAAAAGCGTGCACACCTT 59.186 45.000 18.64 15.13 0.00 3.50
52 53 0.381801 CTTGAAAAGCGTGCACACCT 59.618 50.000 18.64 9.48 36.98 4.00
53 54 0.380378 TCTTGAAAAGCGTGCACACC 59.620 50.000 18.64 7.04 45.70 4.16
54 55 2.405892 ATCTTGAAAAGCGTGCACAC 57.594 45.000 18.64 7.31 45.70 3.82
55 56 3.435105 AAATCTTGAAAAGCGTGCACA 57.565 38.095 18.64 0.00 45.70 4.57
56 57 4.976116 ACTTAAATCTTGAAAAGCGTGCAC 59.024 37.500 6.82 6.82 45.70 4.57
57 58 5.181690 ACTTAAATCTTGAAAAGCGTGCA 57.818 34.783 0.00 0.00 45.70 4.57
58 59 7.007456 GTCATACTTAAATCTTGAAAAGCGTGC 59.993 37.037 0.00 0.00 45.70 5.34
59 60 7.481798 GGTCATACTTAAATCTTGAAAAGCGTG 59.518 37.037 0.00 0.00 45.70 5.34
60 61 7.174253 TGGTCATACTTAAATCTTGAAAAGCGT 59.826 33.333 0.00 0.00 45.70 5.07
61 62 7.526608 TGGTCATACTTAAATCTTGAAAAGCG 58.473 34.615 0.00 0.00 45.70 4.68
81 82 9.253832 ACATTTCATTGGTTAGATTTATGGTCA 57.746 29.630 0.00 0.00 0.00 4.02
82 83 9.520204 CACATTTCATTGGTTAGATTTATGGTC 57.480 33.333 0.00 0.00 0.00 4.02
83 84 8.477256 CCACATTTCATTGGTTAGATTTATGGT 58.523 33.333 0.00 0.00 0.00 3.55
84 85 7.927629 CCCACATTTCATTGGTTAGATTTATGG 59.072 37.037 0.00 0.00 0.00 2.74
85 86 8.477256 ACCCACATTTCATTGGTTAGATTTATG 58.523 33.333 0.00 0.00 0.00 1.90
86 87 8.608185 ACCCACATTTCATTGGTTAGATTTAT 57.392 30.769 0.00 0.00 0.00 1.40
87 88 9.535170 TTACCCACATTTCATTGGTTAGATTTA 57.465 29.630 0.00 0.00 0.00 1.40
88 89 6.933514 ACCCACATTTCATTGGTTAGATTT 57.066 33.333 0.00 0.00 0.00 2.17
89 90 8.477256 CATTACCCACATTTCATTGGTTAGATT 58.523 33.333 0.00 0.00 0.00 2.40
90 91 7.619302 ACATTACCCACATTTCATTGGTTAGAT 59.381 33.333 0.00 0.00 0.00 1.98
91 92 6.951198 ACATTACCCACATTTCATTGGTTAGA 59.049 34.615 0.00 0.00 0.00 2.10
92 93 7.035004 CACATTACCCACATTTCATTGGTTAG 58.965 38.462 0.00 0.00 0.00 2.34
93 94 6.071108 CCACATTACCCACATTTCATTGGTTA 60.071 38.462 0.00 0.00 0.00 2.85
94 95 5.279910 CCACATTACCCACATTTCATTGGTT 60.280 40.000 0.00 0.00 0.00 3.67
95 96 4.222588 CCACATTACCCACATTTCATTGGT 59.777 41.667 0.00 0.00 0.00 3.67
96 97 4.757594 CCACATTACCCACATTTCATTGG 58.242 43.478 0.00 0.00 0.00 3.16
97 98 4.183101 GCCACATTACCCACATTTCATTG 58.817 43.478 0.00 0.00 0.00 2.82
98 99 3.837146 TGCCACATTACCCACATTTCATT 59.163 39.130 0.00 0.00 0.00 2.57
99 100 3.439154 TGCCACATTACCCACATTTCAT 58.561 40.909 0.00 0.00 0.00 2.57
100 101 2.881734 TGCCACATTACCCACATTTCA 58.118 42.857 0.00 0.00 0.00 2.69
101 102 3.784338 CATGCCACATTACCCACATTTC 58.216 45.455 0.00 0.00 0.00 2.17
102 103 2.093553 GCATGCCACATTACCCACATTT 60.094 45.455 6.36 0.00 0.00 2.32
103 104 1.481772 GCATGCCACATTACCCACATT 59.518 47.619 6.36 0.00 0.00 2.71
104 105 1.113788 GCATGCCACATTACCCACAT 58.886 50.000 6.36 0.00 0.00 3.21
105 106 0.251519 TGCATGCCACATTACCCACA 60.252 50.000 16.68 0.00 0.00 4.17
106 107 0.894141 TTGCATGCCACATTACCCAC 59.106 50.000 16.68 0.00 0.00 4.61
107 108 1.637338 TTTGCATGCCACATTACCCA 58.363 45.000 16.68 0.00 0.00 4.51
108 109 2.985957 ATTTGCATGCCACATTACCC 57.014 45.000 16.68 0.00 0.00 3.69
109 110 5.925969 GGTATAATTTGCATGCCACATTACC 59.074 40.000 16.68 14.68 31.04 2.85
110 111 6.511416 TGGTATAATTTGCATGCCACATTAC 58.489 36.000 16.68 9.79 33.78 1.89
111 112 6.721704 TGGTATAATTTGCATGCCACATTA 57.278 33.333 16.68 14.34 33.78 1.90
112 113 5.611128 TGGTATAATTTGCATGCCACATT 57.389 34.783 16.68 12.62 33.78 2.71
113 114 5.811796 ATGGTATAATTTGCATGCCACAT 57.188 34.783 16.68 0.97 40.38 3.21
114 115 5.128335 TCAATGGTATAATTTGCATGCCACA 59.872 36.000 16.68 0.00 40.38 4.17
115 116 5.599732 TCAATGGTATAATTTGCATGCCAC 58.400 37.500 16.68 1.58 40.38 5.01
116 117 5.866159 TCAATGGTATAATTTGCATGCCA 57.134 34.783 16.68 0.00 41.57 4.92
117 118 7.441760 TGAATTCAATGGTATAATTTGCATGCC 59.558 33.333 16.68 0.00 0.00 4.40
118 119 8.367943 TGAATTCAATGGTATAATTTGCATGC 57.632 30.769 11.82 11.82 0.00 4.06
145 146 9.665719 AAACACCATTGTAAACTTCTTTTGAAT 57.334 25.926 0.00 0.00 34.45 2.57
146 147 9.495572 AAAACACCATTGTAAACTTCTTTTGAA 57.504 25.926 0.00 0.00 33.55 2.69
147 148 9.495572 AAAAACACCATTGTAAACTTCTTTTGA 57.504 25.926 0.00 0.00 33.55 2.69
190 191 9.913310 TTGACCATCAATTAGACCAATAATACA 57.087 29.630 0.00 0.00 30.26 2.29
193 194 9.479549 ACTTTGACCATCAATTAGACCAATAAT 57.520 29.630 0.00 0.00 36.11 1.28
194 195 8.877864 ACTTTGACCATCAATTAGACCAATAA 57.122 30.769 0.00 0.00 36.11 1.40
195 196 8.877864 AACTTTGACCATCAATTAGACCAATA 57.122 30.769 0.00 0.00 36.11 1.90
196 197 7.781324 AACTTTGACCATCAATTAGACCAAT 57.219 32.000 0.00 0.00 36.11 3.16
197 198 8.698973 TTAACTTTGACCATCAATTAGACCAA 57.301 30.769 0.00 0.00 36.11 3.67
198 199 8.698973 TTTAACTTTGACCATCAATTAGACCA 57.301 30.769 0.00 0.00 36.11 4.02
199 200 9.788960 GATTTAACTTTGACCATCAATTAGACC 57.211 33.333 0.00 0.00 36.11 3.85
202 203 9.708222 CGAGATTTAACTTTGACCATCAATTAG 57.292 33.333 0.00 0.00 36.11 1.73
203 204 9.443323 TCGAGATTTAACTTTGACCATCAATTA 57.557 29.630 0.00 0.00 36.11 1.40
204 205 8.335532 TCGAGATTTAACTTTGACCATCAATT 57.664 30.769 0.00 0.00 36.11 2.32
205 206 7.921786 TCGAGATTTAACTTTGACCATCAAT 57.078 32.000 0.00 0.00 36.11 2.57
206 207 7.737972 TTCGAGATTTAACTTTGACCATCAA 57.262 32.000 0.00 0.00 34.03 2.57
207 208 7.737972 TTTCGAGATTTAACTTTGACCATCA 57.262 32.000 0.00 0.00 0.00 3.07
208 209 7.271438 GCTTTTCGAGATTTAACTTTGACCATC 59.729 37.037 0.00 0.00 0.00 3.51
209 210 7.084486 GCTTTTCGAGATTTAACTTTGACCAT 58.916 34.615 0.00 0.00 0.00 3.55
210 211 6.435428 GCTTTTCGAGATTTAACTTTGACCA 58.565 36.000 0.00 0.00 0.00 4.02
211 212 5.564127 CGCTTTTCGAGATTTAACTTTGACC 59.436 40.000 0.00 0.00 41.67 4.02
212 213 6.134061 ACGCTTTTCGAGATTTAACTTTGAC 58.866 36.000 0.00 0.00 41.67 3.18
213 214 6.202188 AGACGCTTTTCGAGATTTAACTTTGA 59.798 34.615 0.00 0.00 41.67 2.69
214 215 6.300902 CAGACGCTTTTCGAGATTTAACTTTG 59.699 38.462 0.00 0.00 41.67 2.77
215 216 6.363473 CAGACGCTTTTCGAGATTTAACTTT 58.637 36.000 0.00 0.00 41.67 2.66
216 217 5.614887 GCAGACGCTTTTCGAGATTTAACTT 60.615 40.000 0.00 0.00 41.67 2.66
217 218 4.143094 GCAGACGCTTTTCGAGATTTAACT 60.143 41.667 0.00 0.00 41.67 2.24
218 219 4.082447 GCAGACGCTTTTCGAGATTTAAC 58.918 43.478 0.00 0.00 41.67 2.01
219 220 3.743911 TGCAGACGCTTTTCGAGATTTAA 59.256 39.130 0.00 0.00 41.67 1.52
220 221 3.122948 GTGCAGACGCTTTTCGAGATTTA 59.877 43.478 0.00 0.00 41.67 1.40
221 222 2.096218 GTGCAGACGCTTTTCGAGATTT 60.096 45.455 0.00 0.00 41.67 2.17
222 223 1.461127 GTGCAGACGCTTTTCGAGATT 59.539 47.619 0.00 0.00 41.67 2.40
223 224 1.071605 GTGCAGACGCTTTTCGAGAT 58.928 50.000 0.00 0.00 41.67 2.75
224 225 0.944311 GGTGCAGACGCTTTTCGAGA 60.944 55.000 0.00 0.00 41.67 4.04
225 226 0.946221 AGGTGCAGACGCTTTTCGAG 60.946 55.000 0.00 0.00 41.67 4.04
226 227 0.531974 AAGGTGCAGACGCTTTTCGA 60.532 50.000 0.00 0.00 41.67 3.71
227 228 1.144969 TAAGGTGCAGACGCTTTTCG 58.855 50.000 0.00 0.00 45.38 3.46
228 229 5.064707 TGAATATAAGGTGCAGACGCTTTTC 59.935 40.000 0.00 0.00 39.64 2.29
229 230 4.941263 TGAATATAAGGTGCAGACGCTTTT 59.059 37.500 0.00 0.00 39.64 2.27
230 231 4.513442 TGAATATAAGGTGCAGACGCTTT 58.487 39.130 0.00 0.00 39.64 3.51
231 232 4.122776 CTGAATATAAGGTGCAGACGCTT 58.877 43.478 0.00 0.00 39.64 4.68
232 233 3.493350 CCTGAATATAAGGTGCAGACGCT 60.493 47.826 0.00 0.00 39.64 5.07
233 234 2.802816 CCTGAATATAAGGTGCAGACGC 59.197 50.000 0.00 0.00 39.24 5.19
234 235 4.322080 TCCTGAATATAAGGTGCAGACG 57.678 45.455 0.00 0.00 36.14 4.18
235 236 5.471456 CCATTCCTGAATATAAGGTGCAGAC 59.529 44.000 0.00 0.00 36.14 3.51
236 237 5.132648 ACCATTCCTGAATATAAGGTGCAGA 59.867 40.000 0.00 0.00 36.14 4.26
237 238 5.240183 CACCATTCCTGAATATAAGGTGCAG 59.760 44.000 11.77 0.00 35.66 4.41
238 239 5.132502 CACCATTCCTGAATATAAGGTGCA 58.867 41.667 11.77 0.00 35.66 4.57
239 240 4.520492 CCACCATTCCTGAATATAAGGTGC 59.480 45.833 16.13 0.00 38.65 5.01
240 241 5.072741 CCCACCATTCCTGAATATAAGGTG 58.927 45.833 15.21 15.21 39.19 4.00
241 242 4.981647 TCCCACCATTCCTGAATATAAGGT 59.018 41.667 4.68 0.00 36.14 3.50
242 243 5.582950 TCCCACCATTCCTGAATATAAGG 57.417 43.478 0.00 0.00 36.02 2.69
243 244 7.776969 CCATATCCCACCATTCCTGAATATAAG 59.223 40.741 0.00 0.00 0.00 1.73
244 245 7.241676 ACCATATCCCACCATTCCTGAATATAA 59.758 37.037 0.00 0.00 0.00 0.98
245 246 6.740000 ACCATATCCCACCATTCCTGAATATA 59.260 38.462 0.00 0.00 0.00 0.86
246 247 5.557138 ACCATATCCCACCATTCCTGAATAT 59.443 40.000 0.00 0.00 0.00 1.28
247 248 4.919510 ACCATATCCCACCATTCCTGAATA 59.080 41.667 0.00 0.00 0.00 1.75
248 249 3.728990 ACCATATCCCACCATTCCTGAAT 59.271 43.478 0.00 0.00 0.00 2.57
249 250 3.117550 CACCATATCCCACCATTCCTGAA 60.118 47.826 0.00 0.00 0.00 3.02
250 251 2.442878 CACCATATCCCACCATTCCTGA 59.557 50.000 0.00 0.00 0.00 3.86
251 252 2.489619 CCACCATATCCCACCATTCCTG 60.490 54.545 0.00 0.00 0.00 3.86
252 253 1.782752 CCACCATATCCCACCATTCCT 59.217 52.381 0.00 0.00 0.00 3.36
253 254 1.780309 TCCACCATATCCCACCATTCC 59.220 52.381 0.00 0.00 0.00 3.01
254 255 3.593442 TTCCACCATATCCCACCATTC 57.407 47.619 0.00 0.00 0.00 2.67
255 256 5.136048 AGTTATTCCACCATATCCCACCATT 59.864 40.000 0.00 0.00 0.00 3.16
256 257 4.669768 AGTTATTCCACCATATCCCACCAT 59.330 41.667 0.00 0.00 0.00 3.55
257 258 4.051478 AGTTATTCCACCATATCCCACCA 58.949 43.478 0.00 0.00 0.00 4.17
258 259 4.506802 GGAGTTATTCCACCATATCCCACC 60.507 50.000 0.00 0.00 46.01 4.61
259 260 4.652822 GGAGTTATTCCACCATATCCCAC 58.347 47.826 0.00 0.00 46.01 4.61
260 261 4.993705 GGAGTTATTCCACCATATCCCA 57.006 45.455 0.00 0.00 46.01 4.37
271 272 7.860918 GGAATATTTATCCGGGAGTTATTCC 57.139 40.000 21.58 21.58 46.00 3.01
283 284 8.973835 TTGTTGTTCAAACGGAATATTTATCC 57.026 30.769 0.00 0.00 37.93 2.59
285 286 9.974980 ACTTTGTTGTTCAAACGGAATATTTAT 57.025 25.926 0.00 0.00 40.56 1.40
286 287 9.239002 CACTTTGTTGTTCAAACGGAATATTTA 57.761 29.630 0.00 0.00 40.56 1.40
287 288 7.254286 GCACTTTGTTGTTCAAACGGAATATTT 60.254 33.333 0.00 0.00 40.56 1.40
288 289 6.200097 GCACTTTGTTGTTCAAACGGAATATT 59.800 34.615 0.00 0.00 40.56 1.28
289 290 5.689961 GCACTTTGTTGTTCAAACGGAATAT 59.310 36.000 0.00 0.00 40.56 1.28
290 291 5.038033 GCACTTTGTTGTTCAAACGGAATA 58.962 37.500 0.00 0.00 40.56 1.75
291 292 3.862845 GCACTTTGTTGTTCAAACGGAAT 59.137 39.130 0.00 0.00 40.56 3.01
292 293 3.246619 GCACTTTGTTGTTCAAACGGAA 58.753 40.909 0.00 0.00 40.56 4.30
293 294 2.229062 TGCACTTTGTTGTTCAAACGGA 59.771 40.909 0.00 0.00 40.56 4.69
294 295 2.344142 GTGCACTTTGTTGTTCAAACGG 59.656 45.455 10.32 0.00 40.56 4.44
295 296 3.241701 AGTGCACTTTGTTGTTCAAACG 58.758 40.909 15.25 0.00 40.56 3.60
296 297 6.698359 TTTAGTGCACTTTGTTGTTCAAAC 57.302 33.333 27.06 0.00 40.56 2.93
297 298 6.701841 TGTTTTAGTGCACTTTGTTGTTCAAA 59.298 30.769 27.06 12.88 42.79 2.69
298 299 6.144724 GTGTTTTAGTGCACTTTGTTGTTCAA 59.855 34.615 27.06 6.75 33.22 2.69
299 300 5.631512 GTGTTTTAGTGCACTTTGTTGTTCA 59.368 36.000 27.06 10.76 33.22 3.18
300 301 5.631512 TGTGTTTTAGTGCACTTTGTTGTTC 59.368 36.000 27.06 9.72 36.63 3.18
301 302 5.533482 TGTGTTTTAGTGCACTTTGTTGTT 58.467 33.333 27.06 0.00 36.63 2.83
302 303 5.127693 TGTGTTTTAGTGCACTTTGTTGT 57.872 34.783 27.06 0.33 36.63 3.32
303 304 6.309980 TCATTGTGTTTTAGTGCACTTTGTTG 59.690 34.615 27.06 10.52 36.63 3.33
304 305 6.393990 TCATTGTGTTTTAGTGCACTTTGTT 58.606 32.000 27.06 2.06 36.63 2.83
305 306 5.960113 TCATTGTGTTTTAGTGCACTTTGT 58.040 33.333 27.06 2.51 36.63 2.83
306 307 6.884096 TTCATTGTGTTTTAGTGCACTTTG 57.116 33.333 27.06 8.96 36.63 2.77
307 308 6.870965 TGTTTCATTGTGTTTTAGTGCACTTT 59.129 30.769 27.06 3.84 36.63 2.66
308 309 6.393990 TGTTTCATTGTGTTTTAGTGCACTT 58.606 32.000 27.06 9.41 36.63 3.16
309 310 5.960113 TGTTTCATTGTGTTTTAGTGCACT 58.040 33.333 25.12 25.12 36.63 4.40
310 311 6.826893 ATGTTTCATTGTGTTTTAGTGCAC 57.173 33.333 9.40 9.40 36.26 4.57
311 312 7.222417 CAGAATGTTTCATTGTGTTTTAGTGCA 59.778 33.333 10.18 0.00 0.00 4.57
312 313 7.306749 CCAGAATGTTTCATTGTGTTTTAGTGC 60.307 37.037 15.00 0.00 0.00 4.40
313 314 7.706179 ACCAGAATGTTTCATTGTGTTTTAGTG 59.294 33.333 15.00 4.54 0.00 2.74
314 315 7.706179 CACCAGAATGTTTCATTGTGTTTTAGT 59.294 33.333 15.00 6.03 0.00 2.24
315 316 7.920151 TCACCAGAATGTTTCATTGTGTTTTAG 59.080 33.333 15.00 5.56 0.00 1.85
316 317 7.776107 TCACCAGAATGTTTCATTGTGTTTTA 58.224 30.769 15.00 0.67 0.00 1.52
317 318 6.638610 TCACCAGAATGTTTCATTGTGTTTT 58.361 32.000 15.00 1.50 0.00 2.43
318 319 6.219417 TCACCAGAATGTTTCATTGTGTTT 57.781 33.333 15.00 3.36 0.00 2.83
319 320 5.850557 TCACCAGAATGTTTCATTGTGTT 57.149 34.783 15.00 2.47 0.00 3.32
320 321 5.360714 AGTTCACCAGAATGTTTCATTGTGT 59.639 36.000 15.00 4.76 35.92 3.72
321 322 5.835257 AGTTCACCAGAATGTTTCATTGTG 58.165 37.500 11.07 11.07 35.92 3.33
335 336 3.812053 CACTCTCTTTTGGAGTTCACCAG 59.188 47.826 0.00 0.00 41.45 4.00
340 341 4.709250 AGGTTCACTCTCTTTTGGAGTTC 58.291 43.478 0.00 0.00 41.45 3.01
344 345 4.408921 TCTCAAGGTTCACTCTCTTTTGGA 59.591 41.667 0.00 0.00 0.00 3.53
347 348 6.360618 ACATTCTCAAGGTTCACTCTCTTTT 58.639 36.000 0.00 0.00 0.00 2.27
348 349 5.934781 ACATTCTCAAGGTTCACTCTCTTT 58.065 37.500 0.00 0.00 0.00 2.52
351 352 7.226720 TGTTTAACATTCTCAAGGTTCACTCTC 59.773 37.037 0.00 0.00 36.68 3.20
463 464 8.974060 ACAGTTGTGTTTATTCTAAAGGAGAA 57.026 30.769 0.00 0.00 40.47 2.87
518 520 9.801873 TCCTCTGTTTCTAAGAAAAATGTTTTG 57.198 29.630 0.00 0.00 0.00 2.44
530 532 4.570930 GGGAGTTGTCCTCTGTTTCTAAG 58.429 47.826 0.00 0.00 43.36 2.18
532 534 2.561419 CGGGAGTTGTCCTCTGTTTCTA 59.439 50.000 0.00 0.00 43.36 2.10
533 535 1.344763 CGGGAGTTGTCCTCTGTTTCT 59.655 52.381 0.00 0.00 43.36 2.52
534 536 1.608283 CCGGGAGTTGTCCTCTGTTTC 60.608 57.143 0.00 0.00 43.36 2.78
537 539 2.584391 GCCGGGAGTTGTCCTCTGT 61.584 63.158 2.18 0.00 43.36 3.41
538 540 2.266055 GCCGGGAGTTGTCCTCTG 59.734 66.667 2.18 0.00 43.36 3.35
539 541 3.003763 GGCCGGGAGTTGTCCTCT 61.004 66.667 2.18 0.00 43.36 3.69
540 542 2.125766 AAAGGCCGGGAGTTGTCCTC 62.126 60.000 2.18 0.00 43.36 3.71
545 547 1.937546 GATGCAAAGGCCGGGAGTTG 61.938 60.000 2.18 0.00 40.13 3.16
553 555 0.099436 GTCACGATGATGCAAAGGCC 59.901 55.000 0.00 0.00 40.13 5.19
558 560 0.321475 TGGCAGTCACGATGATGCAA 60.321 50.000 0.00 8.58 34.71 4.08
561 563 3.461061 AGTATTGGCAGTCACGATGATG 58.539 45.455 0.00 0.00 0.00 3.07
567 569 5.753744 TGTTTTAAAGTATTGGCAGTCACG 58.246 37.500 0.00 0.00 0.00 4.35
573 575 9.810545 GGCTAATAATGTTTTAAAGTATTGGCA 57.189 29.630 20.16 0.00 39.21 4.92
574 576 9.810545 TGGCTAATAATGTTTTAAAGTATTGGC 57.189 29.630 15.32 15.32 37.70 4.52
580 588 7.784470 TGGGTGGCTAATAATGTTTTAAAGT 57.216 32.000 0.00 0.00 0.00 2.66
584 592 9.427821 ACAATATGGGTGGCTAATAATGTTTTA 57.572 29.630 0.00 0.00 0.00 1.52
585 593 8.203485 CACAATATGGGTGGCTAATAATGTTTT 58.797 33.333 0.85 0.00 32.65 2.43
623 631 9.775854 CATTTCTATCTCACAAATGTCTCCTAT 57.224 33.333 0.00 0.00 34.25 2.57
624 632 8.762645 ACATTTCTATCTCACAAATGTCTCCTA 58.237 33.333 3.90 0.00 43.93 2.94
627 635 9.593134 AGTACATTTCTATCTCACAAATGTCTC 57.407 33.333 11.48 7.68 43.93 3.36
646 658 5.280011 CCCACCACTCTCAACTTAGTACATT 60.280 44.000 0.00 0.00 0.00 2.71
650 662 2.565834 GCCCACCACTCTCAACTTAGTA 59.434 50.000 0.00 0.00 0.00 1.82
652 664 1.625818 AGCCCACCACTCTCAACTTAG 59.374 52.381 0.00 0.00 0.00 2.18
654 666 1.625818 CTAGCCCACCACTCTCAACTT 59.374 52.381 0.00 0.00 0.00 2.66
678 699 1.028330 CACTGCATGCACCCACTAGG 61.028 60.000 18.46 7.05 43.78 3.02
679 700 1.028330 CCACTGCATGCACCCACTAG 61.028 60.000 18.46 7.87 0.00 2.57
680 701 1.002257 CCACTGCATGCACCCACTA 60.002 57.895 18.46 0.00 0.00 2.74
681 702 2.282674 CCACTGCATGCACCCACT 60.283 61.111 18.46 0.00 0.00 4.00
682 703 3.376078 CCCACTGCATGCACCCAC 61.376 66.667 18.46 0.00 0.00 4.61
700 721 4.253685 AGTTATGAAATGACACGGTCCTG 58.746 43.478 2.23 0.00 34.88 3.86
715 736 9.929180 GAGATGGCTATGTAATGTAAGTTATGA 57.071 33.333 0.00 0.00 0.00 2.15
716 737 8.864024 CGAGATGGCTATGTAATGTAAGTTATG 58.136 37.037 0.00 0.00 0.00 1.90
717 738 8.035394 CCGAGATGGCTATGTAATGTAAGTTAT 58.965 37.037 0.00 0.00 0.00 1.89
718 739 7.375834 CCGAGATGGCTATGTAATGTAAGTTA 58.624 38.462 0.00 0.00 0.00 2.24
719 740 6.223852 CCGAGATGGCTATGTAATGTAAGTT 58.776 40.000 0.00 0.00 0.00 2.66
720 741 5.784177 CCGAGATGGCTATGTAATGTAAGT 58.216 41.667 0.00 0.00 0.00 2.24
735 756 1.070445 GTGGGAGATGCCGAGATGG 59.930 63.158 0.00 0.00 42.50 3.51
736 757 0.178767 TTGTGGGAGATGCCGAGATG 59.821 55.000 0.00 0.00 37.63 2.90
737 758 0.467384 CTTGTGGGAGATGCCGAGAT 59.533 55.000 0.00 0.00 37.63 2.75
738 759 1.617018 CCTTGTGGGAGATGCCGAGA 61.617 60.000 0.00 0.00 37.63 4.04
739 760 1.153289 CCTTGTGGGAGATGCCGAG 60.153 63.158 0.00 0.00 37.63 4.63
740 761 2.989639 CCTTGTGGGAGATGCCGA 59.010 61.111 0.00 0.00 37.63 5.54
754 775 6.041979 GCATATCATATTTGTTTCCACCCCTT 59.958 38.462 0.00 0.00 0.00 3.95
758 779 7.436118 ACATGCATATCATATTTGTTTCCACC 58.564 34.615 0.00 0.00 33.19 4.61
759 780 9.964303 TTACATGCATATCATATTTGTTTCCAC 57.036 29.630 0.00 0.00 33.19 4.02
766 787 9.970395 AACAACCTTACATGCATATCATATTTG 57.030 29.630 0.00 0.87 33.19 2.32
771 792 9.791801 TGTATAACAACCTTACATGCATATCAT 57.208 29.630 0.00 0.00 35.31 2.45
772 793 9.791801 ATGTATAACAACCTTACATGCATATCA 57.208 29.630 0.00 0.00 35.73 2.15
778 799 9.537192 TGTACTATGTATAACAACCTTACATGC 57.463 33.333 0.00 0.00 37.21 4.06
784 805 9.263446 TCCTTCTGTACTATGTATAACAACCTT 57.737 33.333 0.00 0.00 0.00 3.50
800 821 7.792374 TGCATATCATTTTCTCCTTCTGTAC 57.208 36.000 0.00 0.00 0.00 2.90
817 838 1.196354 GCCTCGAAGTGCATGCATATC 59.804 52.381 25.64 22.18 0.00 1.63
820 841 1.377594 TGCCTCGAAGTGCATGCAT 60.378 52.632 25.64 8.94 32.32 3.96
832 853 4.838486 GCTCGGACTCGTGCCTCG 62.838 72.222 2.03 0.00 46.31 4.63
842 863 5.095490 CACCTTTAATTCAATTGCTCGGAC 58.905 41.667 0.00 0.00 0.00 4.79
845 866 5.942872 AGTCACCTTTAATTCAATTGCTCG 58.057 37.500 0.00 0.00 0.00 5.03
848 869 7.009540 GCATGTAGTCACCTTTAATTCAATTGC 59.990 37.037 0.00 0.00 0.00 3.56
857 878 3.749088 CCAACGCATGTAGTCACCTTTAA 59.251 43.478 0.00 0.00 0.00 1.52
858 879 3.007074 TCCAACGCATGTAGTCACCTTTA 59.993 43.478 0.00 0.00 0.00 1.85
866 887 3.378112 CCATCAAATCCAACGCATGTAGT 59.622 43.478 0.00 0.00 0.00 2.73
867 888 3.627123 TCCATCAAATCCAACGCATGTAG 59.373 43.478 0.00 0.00 0.00 2.74
869 890 2.445427 TCCATCAAATCCAACGCATGT 58.555 42.857 0.00 0.00 0.00 3.21
880 901 6.260936 GTGTTCACGAGGATTATCCATCAAAT 59.739 38.462 14.30 0.00 39.61 2.32
882 903 5.116180 GTGTTCACGAGGATTATCCATCAA 58.884 41.667 14.30 0.00 39.61 2.57
896 917 2.804647 CCTATATGCACGTGTTCACGA 58.195 47.619 27.77 9.58 36.85 4.35
898 919 2.276201 TGCCTATATGCACGTGTTCAC 58.724 47.619 18.38 0.09 36.04 3.18
899 920 2.682155 TGCCTATATGCACGTGTTCA 57.318 45.000 18.38 7.94 36.04 3.18
900 921 3.526385 CATGCCTATATGCACGTGTTC 57.474 47.619 18.38 1.32 45.48 3.18
915 936 0.097674 CTTCTAGTTGCGTGCATGCC 59.902 55.000 27.43 13.45 0.00 4.40
958 980 5.361571 ACACGGGTTTAAATTTCCAAGTTCT 59.638 36.000 0.00 0.00 0.00 3.01
969 991 3.445450 TGCATGCATACACGGGTTTAAAT 59.555 39.130 18.46 0.00 0.00 1.40
1023 1049 2.420547 CCACTCCACAATGATGGACGAT 60.421 50.000 0.00 0.00 44.14 3.73
1029 1058 1.548081 TTGCCCACTCCACAATGATG 58.452 50.000 0.00 0.00 0.00 3.07
1637 1666 1.016130 CATCGTCACCAGCTCCACAC 61.016 60.000 0.00 0.00 0.00 3.82
1639 1668 0.176680 ATCATCGTCACCAGCTCCAC 59.823 55.000 0.00 0.00 0.00 4.02
1645 1674 4.377839 AACACTAGATCATCGTCACCAG 57.622 45.455 0.00 0.00 0.00 4.00
1647 1676 4.744570 TGAAACACTAGATCATCGTCACC 58.255 43.478 0.00 0.00 0.00 4.02
1656 1685 4.154195 ACGCCAAACATGAAACACTAGATC 59.846 41.667 0.00 0.00 0.00 2.75
1659 1689 3.249799 TCACGCCAAACATGAAACACTAG 59.750 43.478 0.00 0.00 0.00 2.57
1668 1698 0.387202 TTTGGGTCACGCCAAACATG 59.613 50.000 6.42 0.00 39.65 3.21
1674 1704 0.684805 AAAAGGTTTGGGTCACGCCA 60.685 50.000 0.00 0.00 39.65 5.69
1677 1707 1.474879 ACACAAAAGGTTTGGGTCACG 59.525 47.619 2.78 0.00 28.19 4.35
1687 1717 1.113788 ACATGCAGCACACAAAAGGT 58.886 45.000 0.00 0.00 0.00 3.50
1689 1719 2.216940 CGAAACATGCAGCACACAAAAG 59.783 45.455 0.00 0.00 0.00 2.27
1690 1720 2.191802 CGAAACATGCAGCACACAAAA 58.808 42.857 0.00 0.00 0.00 2.44
1706 1736 2.817258 CCAGAAGGGCAAATGTACGAAA 59.183 45.455 0.00 0.00 0.00 3.46
1726 1756 7.571244 GCTTAAAGCAGGTAATTTCTTTTTGCC 60.571 37.037 0.00 0.00 41.89 4.52
1743 1774 4.884744 TGTACTTTTGGACAGCTTAAAGCA 59.115 37.500 0.00 0.00 45.56 3.91
1755 1786 7.669722 AGAAATAGAGGCAATTGTACTTTTGGA 59.330 33.333 7.40 0.00 0.00 3.53
1757 1788 9.994432 CTAGAAATAGAGGCAATTGTACTTTTG 57.006 33.333 7.40 0.00 0.00 2.44
1767 1798 7.665559 TGAAACAACACTAGAAATAGAGGCAAT 59.334 33.333 0.00 0.00 0.00 3.56
1803 1837 2.988570 TGGAGACTAGGACTCTCGAAC 58.011 52.381 15.33 3.62 35.86 3.95
1806 1840 4.785511 TTTTTGGAGACTAGGACTCTCG 57.214 45.455 15.33 0.00 35.86 4.04
1811 1845 2.678336 CGGCATTTTTGGAGACTAGGAC 59.322 50.000 0.00 0.00 0.00 3.85
1813 1847 2.711542 ACGGCATTTTTGGAGACTAGG 58.288 47.619 0.00 0.00 0.00 3.02
1819 1856 1.613437 AGGTCAACGGCATTTTTGGAG 59.387 47.619 0.00 0.00 0.00 3.86
1820 1857 1.698506 AGGTCAACGGCATTTTTGGA 58.301 45.000 0.00 0.00 0.00 3.53
1823 1860 2.611751 GCAAAAGGTCAACGGCATTTTT 59.388 40.909 0.00 0.00 29.09 1.94
1831 1868 1.112916 AAGGGGGCAAAAGGTCAACG 61.113 55.000 0.00 0.00 0.00 4.10
1837 1874 0.035317 GAGCAAAAGGGGGCAAAAGG 59.965 55.000 0.00 0.00 0.00 3.11
1838 1875 1.001293 GAGAGCAAAAGGGGGCAAAAG 59.999 52.381 0.00 0.00 0.00 2.27
1843 1880 1.228552 TGTGAGAGCAAAAGGGGGC 60.229 57.895 0.00 0.00 0.00 5.80
1844 1881 0.401738 TCTGTGAGAGCAAAAGGGGG 59.598 55.000 0.00 0.00 0.00 5.40
1845 1882 1.202806 TGTCTGTGAGAGCAAAAGGGG 60.203 52.381 0.00 0.00 0.00 4.79
1846 1883 2.149578 CTGTCTGTGAGAGCAAAAGGG 58.850 52.381 0.00 0.00 0.00 3.95
1873 1910 0.321653 ACCATTTCGAGGTGTGGAGC 60.322 55.000 12.49 0.00 38.13 4.70
1877 1914 2.618053 GGACTACCATTTCGAGGTGTG 58.382 52.381 5.14 1.40 40.26 3.82
1880 1917 1.201424 GGGGACTACCATTTCGAGGT 58.799 55.000 0.08 0.08 42.91 3.85
1889 1926 3.581332 CTCACAAGTAAAGGGGACTACCA 59.419 47.826 0.00 0.00 42.68 3.25
1892 1929 5.396485 TGTACTCACAAGTAAAGGGGACTA 58.604 41.667 0.00 0.00 39.66 2.59
1919 1956 9.634163 AACCGAAAATATGAACTTATTTGAACC 57.366 29.630 6.50 0.00 33.24 3.62
1942 1979 7.067532 TCAATACGTATCACAAACATCAACC 57.932 36.000 8.86 0.00 0.00 3.77
1956 1993 4.149922 CGACCGCAATTCATCAATACGTAT 59.850 41.667 1.14 1.14 0.00 3.06
1960 1997 4.024893 ACATCGACCGCAATTCATCAATAC 60.025 41.667 0.00 0.00 0.00 1.89
1961 1998 4.126437 ACATCGACCGCAATTCATCAATA 58.874 39.130 0.00 0.00 0.00 1.90
1973 2010 1.299468 CAGCCTAGACATCGACCGC 60.299 63.158 0.00 0.00 0.00 5.68
1984 2021 5.587844 AGTTCATTTACAATGCTCAGCCTAG 59.412 40.000 0.00 0.00 0.00 3.02
1996 2033 6.544197 TGAGGCTACAAACAGTTCATTTACAA 59.456 34.615 0.00 0.00 0.00 2.41
2002 2039 5.507985 GCTTTTGAGGCTACAAACAGTTCAT 60.508 40.000 10.34 0.00 39.08 2.57
2003 2040 4.202010 GCTTTTGAGGCTACAAACAGTTCA 60.202 41.667 10.34 0.00 39.08 3.18
2011 2048 3.007940 TGAGCTAGCTTTTGAGGCTACAA 59.992 43.478 20.42 0.00 40.74 2.41
2012 2049 2.567169 TGAGCTAGCTTTTGAGGCTACA 59.433 45.455 20.42 4.95 40.74 2.74
2013 2050 3.252974 TGAGCTAGCTTTTGAGGCTAC 57.747 47.619 20.42 2.03 40.74 3.58
2014 2051 3.981071 TTGAGCTAGCTTTTGAGGCTA 57.019 42.857 20.42 0.00 40.74 3.93
2015 2052 2.867109 TTGAGCTAGCTTTTGAGGCT 57.133 45.000 20.42 0.00 43.02 4.58
2016 2053 3.923017 TTTTGAGCTAGCTTTTGAGGC 57.077 42.857 20.42 4.42 0.00 4.70
2017 2054 5.047802 TGGAATTTTGAGCTAGCTTTTGAGG 60.048 40.000 20.42 0.00 0.00 3.86
2018 2055 6.017400 TGGAATTTTGAGCTAGCTTTTGAG 57.983 37.500 20.42 0.00 0.00 3.02
2025 2062 3.243334 GGAGCATGGAATTTTGAGCTAGC 60.243 47.826 6.62 6.62 31.61 3.42
2026 2063 3.949754 TGGAGCATGGAATTTTGAGCTAG 59.050 43.478 0.00 0.00 31.61 3.42
2029 2066 3.518590 CTTGGAGCATGGAATTTTGAGC 58.481 45.455 0.00 0.00 0.00 4.26
2047 2084 4.517453 TCAACAACGGGAATTCTTACCTTG 59.483 41.667 5.23 7.39 0.00 3.61
2049 2086 4.360951 TCAACAACGGGAATTCTTACCT 57.639 40.909 5.23 0.00 0.00 3.08
2050 2087 5.638596 AATCAACAACGGGAATTCTTACC 57.361 39.130 5.23 0.00 0.00 2.85
2051 2088 7.813645 ACTAAATCAACAACGGGAATTCTTAC 58.186 34.615 5.23 0.00 0.00 2.34
2052 2089 7.989416 ACTAAATCAACAACGGGAATTCTTA 57.011 32.000 5.23 0.00 0.00 2.10
2054 2091 6.894339 AACTAAATCAACAACGGGAATTCT 57.106 33.333 5.23 0.00 0.00 2.40
2055 2092 9.285770 GAATAACTAAATCAACAACGGGAATTC 57.714 33.333 0.00 0.00 0.00 2.17
2056 2093 7.966204 CGAATAACTAAATCAACAACGGGAATT 59.034 33.333 0.00 0.00 0.00 2.17
2057 2094 7.120138 ACGAATAACTAAATCAACAACGGGAAT 59.880 33.333 0.00 0.00 0.00 3.01
2059 2096 5.933463 ACGAATAACTAAATCAACAACGGGA 59.067 36.000 0.00 0.00 0.00 5.14
2073 2110 8.658609 CCTTCGGTTCAAATAAACGAATAACTA 58.341 33.333 10.63 0.00 0.00 2.24
2074 2111 7.524065 CCTTCGGTTCAAATAAACGAATAACT 58.476 34.615 10.63 0.00 0.00 2.24
2075 2112 6.249893 GCCTTCGGTTCAAATAAACGAATAAC 59.750 38.462 10.63 1.36 0.00 1.89
2076 2113 6.072618 TGCCTTCGGTTCAAATAAACGAATAA 60.073 34.615 10.63 0.00 0.00 1.40
2077 2114 5.411977 TGCCTTCGGTTCAAATAAACGAATA 59.588 36.000 10.63 0.00 0.00 1.75
2078 2115 4.216687 TGCCTTCGGTTCAAATAAACGAAT 59.783 37.500 10.63 0.00 0.00 3.34
2079 2116 3.564644 TGCCTTCGGTTCAAATAAACGAA 59.435 39.130 9.90 9.90 0.00 3.85
2080 2117 3.139850 TGCCTTCGGTTCAAATAAACGA 58.860 40.909 0.00 0.00 0.00 3.85
2081 2118 3.546002 TGCCTTCGGTTCAAATAAACG 57.454 42.857 0.00 0.00 0.00 3.60
2082 2119 7.876896 TTAAATGCCTTCGGTTCAAATAAAC 57.123 32.000 0.00 0.00 0.00 2.01
2083 2120 9.495572 AAATTAAATGCCTTCGGTTCAAATAAA 57.504 25.926 0.00 0.00 0.00 1.40
2084 2121 9.495572 AAAATTAAATGCCTTCGGTTCAAATAA 57.504 25.926 0.00 0.00 0.00 1.40
2089 2126 6.864165 GTGTAAAATTAAATGCCTTCGGTTCA 59.136 34.615 0.00 0.00 0.00 3.18
2093 2130 6.866248 ACAAGTGTAAAATTAAATGCCTTCGG 59.134 34.615 0.00 0.00 0.00 4.30
2095 2132 8.587952 ACACAAGTGTAAAATTAAATGCCTTC 57.412 30.769 3.64 0.00 42.90 3.46
2107 2144 6.483385 TCTTCGTTTGACACAAGTGTAAAA 57.517 33.333 11.00 11.00 45.05 1.52
2108 2145 6.483385 TTCTTCGTTTGACACAAGTGTAAA 57.517 33.333 5.74 2.15 45.05 2.01
2109 2146 6.148150 ACTTTCTTCGTTTGACACAAGTGTAA 59.852 34.615 5.74 0.00 45.05 2.41
2110 2147 5.640357 ACTTTCTTCGTTTGACACAAGTGTA 59.360 36.000 5.74 0.00 45.05 2.90
2112 2149 4.969816 ACTTTCTTCGTTTGACACAAGTG 58.030 39.130 0.00 0.00 0.00 3.16
2113 2150 4.935808 AGACTTTCTTCGTTTGACACAAGT 59.064 37.500 0.00 0.00 0.00 3.16
2114 2151 5.470845 AGACTTTCTTCGTTTGACACAAG 57.529 39.130 0.00 0.00 0.00 3.16
2115 2152 5.870433 TGTAGACTTTCTTCGTTTGACACAA 59.130 36.000 0.00 0.00 0.00 3.33
2157 2197 4.361451 AACATGCTATCTTTTCGGCTTG 57.639 40.909 0.00 0.00 36.41 4.01
2159 2199 3.758554 ACAAACATGCTATCTTTTCGGCT 59.241 39.130 0.00 0.00 0.00 5.52
2163 2203 7.599998 ACATTCCAACAAACATGCTATCTTTTC 59.400 33.333 0.00 0.00 0.00 2.29
2168 2208 7.656707 AAAACATTCCAACAAACATGCTATC 57.343 32.000 0.00 0.00 0.00 2.08
2171 2211 5.448904 GCAAAAACATTCCAACAAACATGCT 60.449 36.000 0.00 0.00 0.00 3.79
2176 2216 4.154918 TGTGGCAAAAACATTCCAACAAAC 59.845 37.500 0.00 0.00 0.00 2.93
2184 2224 2.803451 TCACGTGTGGCAAAAACATTC 58.197 42.857 16.51 0.00 0.00 2.67
2187 2227 2.949451 ATTCACGTGTGGCAAAAACA 57.051 40.000 16.51 0.00 0.00 2.83
2188 2228 3.182967 TGAATTCACGTGTGGCAAAAAC 58.817 40.909 16.51 1.80 0.00 2.43
2193 2233 0.310543 GCTTGAATTCACGTGTGGCA 59.689 50.000 16.51 7.21 0.00 4.92
2194 2234 0.387239 GGCTTGAATTCACGTGTGGC 60.387 55.000 16.51 9.85 0.00 5.01
2195 2235 0.240945 GGGCTTGAATTCACGTGTGG 59.759 55.000 16.51 0.00 0.00 4.17
2196 2236 0.950836 TGGGCTTGAATTCACGTGTG 59.049 50.000 16.51 0.00 0.00 3.82
2199 2239 2.095263 CGATTTGGGCTTGAATTCACGT 60.095 45.455 7.89 0.00 0.00 4.49
2208 2248 6.738114 ACACATATATTTCGATTTGGGCTTG 58.262 36.000 0.00 0.00 0.00 4.01
2209 2249 6.959639 ACACATATATTTCGATTTGGGCTT 57.040 33.333 0.00 0.00 0.00 4.35
2233 2273 5.836358 GGACTTCTATGAGGTGGATACTCTT 59.164 44.000 0.00 0.00 35.98 2.85
2234 2274 5.390387 GGACTTCTATGAGGTGGATACTCT 58.610 45.833 0.00 0.00 35.98 3.24
2235 2275 4.525100 GGGACTTCTATGAGGTGGATACTC 59.475 50.000 0.00 0.00 35.55 2.59
2236 2276 4.171044 AGGGACTTCTATGAGGTGGATACT 59.829 45.833 0.00 0.00 27.25 2.12
2239 2279 3.582164 GAGGGACTTCTATGAGGTGGAT 58.418 50.000 0.00 0.00 41.55 3.41
2240 2280 2.687014 CGAGGGACTTCTATGAGGTGGA 60.687 54.545 0.00 0.00 41.55 4.02
2241 2281 1.683917 CGAGGGACTTCTATGAGGTGG 59.316 57.143 0.00 0.00 41.55 4.61
2242 2282 2.359531 GACGAGGGACTTCTATGAGGTG 59.640 54.545 0.00 0.00 41.55 4.00
2243 2283 2.657143 GACGAGGGACTTCTATGAGGT 58.343 52.381 0.00 0.00 41.55 3.85
2246 2286 1.022735 GCGACGAGGGACTTCTATGA 58.977 55.000 0.00 0.00 41.55 2.15
2247 2287 0.738975 TGCGACGAGGGACTTCTATG 59.261 55.000 0.00 0.00 41.55 2.23
2248 2288 1.693627 ATGCGACGAGGGACTTCTAT 58.306 50.000 0.00 0.00 41.55 1.98
2249 2289 1.471119 AATGCGACGAGGGACTTCTA 58.529 50.000 0.00 0.00 41.55 2.10
2250 2290 1.405821 CTAATGCGACGAGGGACTTCT 59.594 52.381 0.00 0.00 41.55 2.85
2251 2291 1.536284 CCTAATGCGACGAGGGACTTC 60.536 57.143 0.00 0.00 41.55 3.01
2252 2292 0.460311 CCTAATGCGACGAGGGACTT 59.540 55.000 0.00 0.00 41.55 3.01
2254 2294 1.591863 GCCTAATGCGACGAGGGAC 60.592 63.158 0.00 0.00 0.00 4.46
2255 2295 1.609635 TTGCCTAATGCGACGAGGGA 61.610 55.000 0.00 0.00 45.60 4.20
2256 2296 1.153449 TTGCCTAATGCGACGAGGG 60.153 57.895 0.00 0.00 45.60 4.30
2264 2304 3.119849 AGTCACAAATCGTTGCCTAATGC 60.120 43.478 0.00 0.00 38.39 3.56
2266 2306 6.430000 AGTTAAGTCACAAATCGTTGCCTAAT 59.570 34.615 0.00 0.00 38.39 1.73
2273 2313 7.758495 AGTTCAAAGTTAAGTCACAAATCGTT 58.242 30.769 0.00 0.00 0.00 3.85
2275 2315 9.878599 ATAAGTTCAAAGTTAAGTCACAAATCG 57.121 29.630 0.00 0.00 0.00 3.34
2325 2368 4.755266 AGTTAAGAGTGACCAAGTGTGT 57.245 40.909 0.00 0.00 0.00 3.72
2355 2398 8.739039 TCCATATCTGAAATCGTGAAACAAATT 58.261 29.630 0.00 0.00 35.74 1.82
2357 2400 7.680442 TCCATATCTGAAATCGTGAAACAAA 57.320 32.000 0.00 0.00 35.74 2.83
2482 2525 9.726232 GTTACAAAAGGTAAAAGAAAAGTCGAT 57.274 29.630 0.00 0.00 43.30 3.59
2483 2526 8.183536 GGTTACAAAAGGTAAAAGAAAAGTCGA 58.816 33.333 0.00 0.00 43.30 4.20
2484 2527 7.164662 CGGTTACAAAAGGTAAAAGAAAAGTCG 59.835 37.037 0.00 0.00 43.30 4.18
2485 2528 7.433131 CCGGTTACAAAAGGTAAAAGAAAAGTC 59.567 37.037 0.00 0.00 43.30 3.01
2486 2529 7.122501 TCCGGTTACAAAAGGTAAAAGAAAAGT 59.877 33.333 0.00 0.00 43.30 2.66
2487 2530 7.482474 TCCGGTTACAAAAGGTAAAAGAAAAG 58.518 34.615 0.00 0.00 43.30 2.27
2488 2531 7.401955 TCCGGTTACAAAAGGTAAAAGAAAA 57.598 32.000 0.00 0.00 43.30 2.29
2489 2532 7.585579 ATCCGGTTACAAAAGGTAAAAGAAA 57.414 32.000 0.00 0.00 43.30 2.52
2490 2533 8.866970 ATATCCGGTTACAAAAGGTAAAAGAA 57.133 30.769 0.00 0.00 43.30 2.52
2491 2534 8.323567 AGATATCCGGTTACAAAAGGTAAAAGA 58.676 33.333 0.00 0.00 43.30 2.52
2492 2535 8.502105 AGATATCCGGTTACAAAAGGTAAAAG 57.498 34.615 0.00 0.00 43.30 2.27
2493 2536 8.866970 AAGATATCCGGTTACAAAAGGTAAAA 57.133 30.769 0.00 0.00 43.30 1.52
2494 2537 8.866970 AAAGATATCCGGTTACAAAAGGTAAA 57.133 30.769 0.00 0.00 43.30 2.01
2495 2538 8.866970 AAAAGATATCCGGTTACAAAAGGTAA 57.133 30.769 0.00 0.00 39.62 2.85
2496 2539 8.866970 AAAAAGATATCCGGTTACAAAAGGTA 57.133 30.769 0.00 0.00 0.00 3.08
2497 2540 7.770366 AAAAAGATATCCGGTTACAAAAGGT 57.230 32.000 0.00 0.00 0.00 3.50
2573 2616 9.582431 CGACCTATCTATAAGAAAAGTGTTCAA 57.418 33.333 0.00 0.00 0.00 2.69
2574 2617 8.963725 TCGACCTATCTATAAGAAAAGTGTTCA 58.036 33.333 0.00 0.00 0.00 3.18
2575 2618 9.798994 TTCGACCTATCTATAAGAAAAGTGTTC 57.201 33.333 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.