Multiple sequence alignment - TraesCS4A01G446100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G446100 chr4A 100.000 2851 0 0 1 2851 713828916 713831766 0.000000e+00 5265
1 TraesCS4A01G446100 chr4A 96.863 1020 26 5 1837 2851 152507260 152508278 0.000000e+00 1701
2 TraesCS4A01G446100 chr4A 96.484 1024 31 5 1832 2851 427498637 427499659 0.000000e+00 1687
3 TraesCS4A01G446100 chr4A 81.858 915 81 40 943 1837 713399038 713399887 0.000000e+00 691
4 TraesCS4A01G446100 chr4A 80.698 430 43 19 1282 1687 713140334 713140747 5.970000e-77 298
5 TraesCS4A01G446100 chr4A 84.691 307 28 11 994 1285 713367594 713367896 3.590000e-74 289
6 TraesCS4A01G446100 chr4A 78.154 531 51 30 1092 1608 713120067 713120546 7.780000e-71 278
7 TraesCS4A01G446100 chr4A 91.758 182 6 2 1515 1687 713120576 713120757 7.890000e-61 244
8 TraesCS4A01G446100 chr4A 81.481 189 22 6 1652 1837 713367893 713368071 2.960000e-30 143
9 TraesCS4A01G446100 chr1A 96.670 1021 30 4 1835 2851 173309077 173310097 0.000000e+00 1694
10 TraesCS4A01G446100 chr7A 96.670 1021 28 6 1836 2851 669071075 669072094 0.000000e+00 1692
11 TraesCS4A01G446100 chr7A 84.134 1103 88 31 683 1723 19417589 19418666 0.000000e+00 987
12 TraesCS4A01G446100 chr7A 82.143 896 64 41 890 1723 19371756 19372617 0.000000e+00 680
13 TraesCS4A01G446100 chr7A 83.553 608 41 17 947 1515 19377275 19377862 5.450000e-142 514
14 TraesCS4A01G446100 chr7A 78.639 529 62 30 1092 1610 19252308 19251821 1.280000e-78 303
15 TraesCS4A01G446100 chr7A 90.000 220 15 5 1590 1807 19235619 19235405 7.780000e-71 278
16 TraesCS4A01G446100 chr7A 84.047 257 23 9 1352 1608 19215801 19215563 6.140000e-57 231
17 TraesCS4A01G446100 chr7A 88.298 188 7 3 1515 1687 19251781 19251594 8.000000e-51 211
18 TraesCS4A01G446100 chr7A 87.766 188 8 3 1515 1687 19215533 19215346 3.720000e-49 206
19 TraesCS4A01G446100 chr7A 76.776 366 32 31 1511 1837 19382744 19383095 3.800000e-34 156
20 TraesCS4A01G446100 chr7A 90.909 88 7 1 176 263 19440206 19440292 1.790000e-22 117
21 TraesCS4A01G446100 chr6B 96.657 1017 31 3 1838 2851 142595204 142594188 0.000000e+00 1687
22 TraesCS4A01G446100 chr3B 96.654 1016 30 4 1836 2847 10684774 10685789 0.000000e+00 1685
23 TraesCS4A01G446100 chr2B 96.565 1019 30 4 1838 2851 564852304 564853322 0.000000e+00 1683
24 TraesCS4A01G446100 chr2B 96.477 1022 30 6 1835 2851 643198227 643197207 0.000000e+00 1683
25 TraesCS4A01G446100 chr7B 96.210 1029 31 6 1830 2851 647427705 647428732 0.000000e+00 1677
26 TraesCS4A01G446100 chr7D 85.736 673 52 17 1062 1723 18926548 18927187 0.000000e+00 671
27 TraesCS4A01G446100 chr7D 93.156 263 17 1 1 263 18944291 18944552 4.460000e-103 385
28 TraesCS4A01G446100 chr7D 79.655 521 61 24 1092 1608 18879149 18878670 1.640000e-87 333
29 TraesCS4A01G446100 chr7D 87.568 185 11 3 1515 1687 18878640 18878456 1.340000e-48 204
30 TraesCS4A01G446100 chr7D 77.297 370 43 19 675 1015 18926202 18926559 2.260000e-41 180
31 TraesCS4A01G446100 chrUn 94.667 150 7 1 1 150 470172859 470172711 6.140000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G446100 chr4A 713828916 713831766 2850 False 5265.0 5265 100.0000 1 2851 1 chr4A.!!$F5 2850
1 TraesCS4A01G446100 chr4A 152507260 152508278 1018 False 1701.0 1701 96.8630 1837 2851 1 chr4A.!!$F1 1014
2 TraesCS4A01G446100 chr4A 427498637 427499659 1022 False 1687.0 1687 96.4840 1832 2851 1 chr4A.!!$F2 1019
3 TraesCS4A01G446100 chr4A 713399038 713399887 849 False 691.0 691 81.8580 943 1837 1 chr4A.!!$F4 894
4 TraesCS4A01G446100 chr4A 713120067 713120757 690 False 261.0 278 84.9560 1092 1687 2 chr4A.!!$F6 595
5 TraesCS4A01G446100 chr1A 173309077 173310097 1020 False 1694.0 1694 96.6700 1835 2851 1 chr1A.!!$F1 1016
6 TraesCS4A01G446100 chr7A 669071075 669072094 1019 False 1692.0 1692 96.6700 1836 2851 1 chr7A.!!$F6 1015
7 TraesCS4A01G446100 chr7A 19417589 19418666 1077 False 987.0 987 84.1340 683 1723 1 chr7A.!!$F4 1040
8 TraesCS4A01G446100 chr7A 19371756 19372617 861 False 680.0 680 82.1430 890 1723 1 chr7A.!!$F1 833
9 TraesCS4A01G446100 chr7A 19377275 19377862 587 False 514.0 514 83.5530 947 1515 1 chr7A.!!$F2 568
10 TraesCS4A01G446100 chr7A 19251594 19252308 714 True 257.0 303 83.4685 1092 1687 2 chr7A.!!$R3 595
11 TraesCS4A01G446100 chr6B 142594188 142595204 1016 True 1687.0 1687 96.6570 1838 2851 1 chr6B.!!$R1 1013
12 TraesCS4A01G446100 chr3B 10684774 10685789 1015 False 1685.0 1685 96.6540 1836 2847 1 chr3B.!!$F1 1011
13 TraesCS4A01G446100 chr2B 564852304 564853322 1018 False 1683.0 1683 96.5650 1838 2851 1 chr2B.!!$F1 1013
14 TraesCS4A01G446100 chr2B 643197207 643198227 1020 True 1683.0 1683 96.4770 1835 2851 1 chr2B.!!$R1 1016
15 TraesCS4A01G446100 chr7B 647427705 647428732 1027 False 1677.0 1677 96.2100 1830 2851 1 chr7B.!!$F1 1021
16 TraesCS4A01G446100 chr7D 18926202 18927187 985 False 425.5 671 81.5165 675 1723 2 chr7D.!!$F2 1048
17 TraesCS4A01G446100 chr7D 18878456 18879149 693 True 268.5 333 83.6115 1092 1687 2 chr7D.!!$R1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.033601 TTTTCACCACTGTGCAGGGT 60.034 50.0 1.29 5.52 42.46 4.34 F
1677 1976 0.041238 AGGAGATGGAGGACGTGGAA 59.959 55.0 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1733 2032 0.107508 GAGGCATGGAGCTACTTGCA 60.108 55.000 31.38 3.15 45.94 4.08 R
2639 2948 2.095461 CTGTCATCGAAGAGACCCTGA 58.905 52.381 11.82 0.00 43.63 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.504926 AGTTTACAAGATATAGGTCCCACAA 57.495 36.000 0.00 0.00 0.00 3.33
26 27 8.102484 AGTTTACAAGATATAGGTCCCACAAT 57.898 34.615 0.00 0.00 0.00 2.71
27 28 9.220906 AGTTTACAAGATATAGGTCCCACAATA 57.779 33.333 0.00 0.00 0.00 1.90
30 31 7.872061 ACAAGATATAGGTCCCACAATATGA 57.128 36.000 0.00 0.00 0.00 2.15
31 32 8.454859 ACAAGATATAGGTCCCACAATATGAT 57.545 34.615 0.00 0.00 0.00 2.45
32 33 8.894592 ACAAGATATAGGTCCCACAATATGATT 58.105 33.333 0.00 0.00 0.00 2.57
33 34 9.745018 CAAGATATAGGTCCCACAATATGATTT 57.255 33.333 0.00 0.00 0.00 2.17
73 74 9.403110 GATATCCATTTGTTAGATGAATTGTGC 57.597 33.333 0.00 0.00 0.00 4.57
74 75 6.839124 TCCATTTGTTAGATGAATTGTGCT 57.161 33.333 0.00 0.00 0.00 4.40
75 76 7.230849 TCCATTTGTTAGATGAATTGTGCTT 57.769 32.000 0.00 0.00 0.00 3.91
76 77 7.315142 TCCATTTGTTAGATGAATTGTGCTTC 58.685 34.615 0.00 0.00 0.00 3.86
77 78 7.177216 TCCATTTGTTAGATGAATTGTGCTTCT 59.823 33.333 0.00 0.00 0.00 2.85
78 79 7.816031 CCATTTGTTAGATGAATTGTGCTTCTT 59.184 33.333 0.00 0.00 0.00 2.52
79 80 9.199982 CATTTGTTAGATGAATTGTGCTTCTTT 57.800 29.630 0.00 0.00 0.00 2.52
90 91 9.844790 TGAATTGTGCTTCTTTATAAGATGTTG 57.155 29.630 0.00 0.00 37.38 3.33
91 92 9.294030 GAATTGTGCTTCTTTATAAGATGTTGG 57.706 33.333 0.00 0.00 37.38 3.77
92 93 7.759489 TTGTGCTTCTTTATAAGATGTTGGT 57.241 32.000 0.00 0.00 37.38 3.67
93 94 8.856153 TTGTGCTTCTTTATAAGATGTTGGTA 57.144 30.769 0.00 0.00 37.38 3.25
94 95 9.461312 TTGTGCTTCTTTATAAGATGTTGGTAT 57.539 29.630 0.00 0.00 37.38 2.73
95 96 9.461312 TGTGCTTCTTTATAAGATGTTGGTATT 57.539 29.630 0.00 0.00 37.38 1.89
111 112 8.263940 TGTTGGTATTTAGTCAGTTCTAATGC 57.736 34.615 0.00 0.00 31.28 3.56
112 113 7.335924 TGTTGGTATTTAGTCAGTTCTAATGCC 59.664 37.037 0.00 0.00 31.28 4.40
113 114 6.953101 TGGTATTTAGTCAGTTCTAATGCCA 58.047 36.000 0.00 0.00 31.28 4.92
114 115 7.398829 TGGTATTTAGTCAGTTCTAATGCCAA 58.601 34.615 0.00 0.00 30.04 4.52
115 116 7.885922 TGGTATTTAGTCAGTTCTAATGCCAAA 59.114 33.333 0.00 0.00 30.04 3.28
116 117 8.736244 GGTATTTAGTCAGTTCTAATGCCAAAA 58.264 33.333 0.00 0.00 31.28 2.44
117 118 9.774742 GTATTTAGTCAGTTCTAATGCCAAAAG 57.225 33.333 0.00 0.00 31.28 2.27
118 119 4.773323 AGTCAGTTCTAATGCCAAAAGC 57.227 40.909 0.00 0.00 44.14 3.51
131 132 4.794248 GCCAAAAGCGTTCAAGAAAAAT 57.206 36.364 0.00 0.00 0.00 1.82
132 133 5.898630 GCCAAAAGCGTTCAAGAAAAATA 57.101 34.783 0.00 0.00 0.00 1.40
133 134 5.666203 GCCAAAAGCGTTCAAGAAAAATAC 58.334 37.500 0.00 0.00 0.00 1.89
134 135 5.462068 GCCAAAAGCGTTCAAGAAAAATACT 59.538 36.000 0.00 0.00 0.00 2.12
135 136 6.639279 GCCAAAAGCGTTCAAGAAAAATACTA 59.361 34.615 0.00 0.00 0.00 1.82
136 137 7.328493 GCCAAAAGCGTTCAAGAAAAATACTAT 59.672 33.333 0.00 0.00 0.00 2.12
137 138 9.191995 CCAAAAGCGTTCAAGAAAAATACTATT 57.808 29.630 0.00 0.00 0.00 1.73
140 141 8.965986 AAGCGTTCAAGAAAAATACTATTTCC 57.034 30.769 0.00 0.00 37.47 3.13
141 142 8.106247 AGCGTTCAAGAAAAATACTATTTCCA 57.894 30.769 0.00 0.00 37.47 3.53
142 143 8.573035 AGCGTTCAAGAAAAATACTATTTCCAA 58.427 29.630 0.00 0.00 37.47 3.53
143 144 9.187455 GCGTTCAAGAAAAATACTATTTCCAAA 57.813 29.630 0.00 0.00 37.47 3.28
167 168 8.655651 AAAAAGCGTTGAATTATCCTTTTTCA 57.344 26.923 0.00 0.00 37.74 2.69
168 169 7.637709 AAAGCGTTGAATTATCCTTTTTCAC 57.362 32.000 0.00 0.00 0.00 3.18
169 170 5.709966 AGCGTTGAATTATCCTTTTTCACC 58.290 37.500 0.00 0.00 0.00 4.02
170 171 5.242838 AGCGTTGAATTATCCTTTTTCACCA 59.757 36.000 0.00 0.00 0.00 4.17
171 172 5.344933 GCGTTGAATTATCCTTTTTCACCAC 59.655 40.000 0.00 0.00 0.00 4.16
172 173 6.677913 CGTTGAATTATCCTTTTTCACCACT 58.322 36.000 0.00 0.00 0.00 4.00
173 174 6.582295 CGTTGAATTATCCTTTTTCACCACTG 59.418 38.462 0.00 0.00 0.00 3.66
174 175 7.433680 GTTGAATTATCCTTTTTCACCACTGT 58.566 34.615 0.00 0.00 0.00 3.55
175 176 6.980593 TGAATTATCCTTTTTCACCACTGTG 58.019 36.000 0.00 0.00 44.18 3.66
176 177 4.846779 TTATCCTTTTTCACCACTGTGC 57.153 40.909 1.29 0.00 42.46 4.57
177 178 2.136298 TCCTTTTTCACCACTGTGCA 57.864 45.000 1.29 0.00 42.46 4.57
178 179 2.023673 TCCTTTTTCACCACTGTGCAG 58.976 47.619 1.29 0.00 42.46 4.41
179 180 1.067516 CCTTTTTCACCACTGTGCAGG 59.932 52.381 1.29 0.00 42.46 4.85
180 181 1.067516 CTTTTTCACCACTGTGCAGGG 59.932 52.381 1.29 0.00 42.46 4.45
181 182 0.033601 TTTTCACCACTGTGCAGGGT 60.034 50.000 1.29 5.52 42.46 4.34
182 183 0.751277 TTTCACCACTGTGCAGGGTG 60.751 55.000 22.52 22.52 44.26 4.61
183 184 1.631071 TTCACCACTGTGCAGGGTGA 61.631 55.000 24.97 24.97 46.88 4.02
184 185 1.893808 CACCACTGTGCAGGGTGAC 60.894 63.158 23.40 0.00 44.98 3.67
203 204 2.276732 CCTGCCTGAAGGTCAAGAAA 57.723 50.000 0.00 0.00 37.57 2.52
204 205 2.800250 CCTGCCTGAAGGTCAAGAAAT 58.200 47.619 0.00 0.00 37.57 2.17
205 206 3.955471 CCTGCCTGAAGGTCAAGAAATA 58.045 45.455 0.00 0.00 37.57 1.40
206 207 4.335416 CCTGCCTGAAGGTCAAGAAATAA 58.665 43.478 0.00 0.00 37.57 1.40
207 208 4.156739 CCTGCCTGAAGGTCAAGAAATAAC 59.843 45.833 0.00 0.00 37.57 1.89
208 209 3.751175 TGCCTGAAGGTCAAGAAATAACG 59.249 43.478 0.00 0.00 37.57 3.18
209 210 3.127030 GCCTGAAGGTCAAGAAATAACGG 59.873 47.826 0.00 0.00 37.57 4.44
210 211 4.324267 CCTGAAGGTCAAGAAATAACGGT 58.676 43.478 0.00 0.00 0.00 4.83
211 212 5.484715 CCTGAAGGTCAAGAAATAACGGTA 58.515 41.667 0.00 0.00 0.00 4.02
212 213 5.935789 CCTGAAGGTCAAGAAATAACGGTAA 59.064 40.000 0.00 0.00 0.00 2.85
213 214 6.428771 CCTGAAGGTCAAGAAATAACGGTAAA 59.571 38.462 0.00 0.00 0.00 2.01
214 215 7.360946 CCTGAAGGTCAAGAAATAACGGTAAAG 60.361 40.741 0.00 0.00 0.00 1.85
215 216 7.218614 TGAAGGTCAAGAAATAACGGTAAAGA 58.781 34.615 0.00 0.00 0.00 2.52
216 217 7.386848 TGAAGGTCAAGAAATAACGGTAAAGAG 59.613 37.037 0.00 0.00 0.00 2.85
217 218 6.171213 AGGTCAAGAAATAACGGTAAAGAGG 58.829 40.000 0.00 0.00 0.00 3.69
218 219 5.163784 GGTCAAGAAATAACGGTAAAGAGGC 60.164 44.000 0.00 0.00 0.00 4.70
219 220 5.642491 GTCAAGAAATAACGGTAAAGAGGCT 59.358 40.000 0.00 0.00 0.00 4.58
220 221 5.873164 TCAAGAAATAACGGTAAAGAGGCTC 59.127 40.000 6.34 6.34 0.00 4.70
221 222 5.678955 AGAAATAACGGTAAAGAGGCTCT 57.321 39.130 12.24 12.24 0.00 4.09
222 223 5.662456 AGAAATAACGGTAAAGAGGCTCTC 58.338 41.667 19.03 5.23 0.00 3.20
223 224 5.187186 AGAAATAACGGTAAAGAGGCTCTCA 59.813 40.000 19.03 6.06 32.06 3.27
224 225 2.745515 AACGGTAAAGAGGCTCTCAC 57.254 50.000 19.03 17.70 32.06 3.51
225 226 1.629043 ACGGTAAAGAGGCTCTCACA 58.371 50.000 19.03 2.89 32.06 3.58
226 227 1.546476 ACGGTAAAGAGGCTCTCACAG 59.454 52.381 19.03 19.77 32.06 3.66
227 228 1.819288 CGGTAAAGAGGCTCTCACAGA 59.181 52.381 19.03 0.00 32.06 3.41
228 229 2.416162 CGGTAAAGAGGCTCTCACAGAC 60.416 54.545 19.03 10.94 32.06 3.51
230 231 3.259625 GGTAAAGAGGCTCTCACAGACTT 59.740 47.826 19.03 8.99 42.72 3.01
231 232 3.676291 AAAGAGGCTCTCACAGACTTC 57.324 47.619 19.03 0.00 42.72 3.01
232 233 2.603075 AGAGGCTCTCACAGACTTCT 57.397 50.000 12.24 0.00 42.72 2.85
233 234 3.730215 AGAGGCTCTCACAGACTTCTA 57.270 47.619 12.24 0.00 42.72 2.10
234 235 4.040936 AGAGGCTCTCACAGACTTCTAA 57.959 45.455 12.24 0.00 42.72 2.10
235 236 4.411927 AGAGGCTCTCACAGACTTCTAAA 58.588 43.478 12.24 0.00 42.72 1.85
236 237 4.219725 AGAGGCTCTCACAGACTTCTAAAC 59.780 45.833 12.24 0.00 42.72 2.01
237 238 3.898123 AGGCTCTCACAGACTTCTAAACA 59.102 43.478 0.00 0.00 36.97 2.83
238 239 4.345257 AGGCTCTCACAGACTTCTAAACAA 59.655 41.667 0.00 0.00 36.97 2.83
239 240 4.688413 GGCTCTCACAGACTTCTAAACAAG 59.312 45.833 0.00 0.00 0.00 3.16
240 241 4.688413 GCTCTCACAGACTTCTAAACAAGG 59.312 45.833 0.00 0.00 0.00 3.61
241 242 5.509840 GCTCTCACAGACTTCTAAACAAGGA 60.510 44.000 0.00 0.00 0.00 3.36
242 243 6.479972 TCTCACAGACTTCTAAACAAGGAA 57.520 37.500 0.00 0.00 0.00 3.36
243 244 7.067496 TCTCACAGACTTCTAAACAAGGAAT 57.933 36.000 0.00 0.00 0.00 3.01
244 245 8.190326 TCTCACAGACTTCTAAACAAGGAATA 57.810 34.615 0.00 0.00 0.00 1.75
245 246 8.307483 TCTCACAGACTTCTAAACAAGGAATAG 58.693 37.037 0.00 0.00 0.00 1.73
246 247 8.190326 TCACAGACTTCTAAACAAGGAATAGA 57.810 34.615 0.00 0.00 0.00 1.98
247 248 8.647796 TCACAGACTTCTAAACAAGGAATAGAA 58.352 33.333 0.00 0.00 35.14 2.10
282 283 8.443953 ACTGAGCTTGAAATATAAATCTGACC 57.556 34.615 0.00 0.00 0.00 4.02
283 284 8.049117 ACTGAGCTTGAAATATAAATCTGACCA 58.951 33.333 0.00 0.00 0.00 4.02
284 285 8.213518 TGAGCTTGAAATATAAATCTGACCAC 57.786 34.615 0.00 0.00 0.00 4.16
285 286 8.049117 TGAGCTTGAAATATAAATCTGACCACT 58.951 33.333 0.00 0.00 0.00 4.00
286 287 9.547753 GAGCTTGAAATATAAATCTGACCACTA 57.452 33.333 0.00 0.00 0.00 2.74
287 288 9.905713 AGCTTGAAATATAAATCTGACCACTAA 57.094 29.630 0.00 0.00 0.00 2.24
288 289 9.937175 GCTTGAAATATAAATCTGACCACTAAC 57.063 33.333 0.00 0.00 0.00 2.34
302 303 9.470399 TCTGACCACTAACTTAATATGTCTACA 57.530 33.333 0.00 0.00 0.00 2.74
312 313 9.802039 AACTTAATATGTCTACAAAACCCAAGA 57.198 29.630 0.00 0.00 0.00 3.02
313 314 9.449719 ACTTAATATGTCTACAAAACCCAAGAG 57.550 33.333 0.00 0.00 0.00 2.85
314 315 9.667107 CTTAATATGTCTACAAAACCCAAGAGA 57.333 33.333 0.00 0.00 0.00 3.10
410 411 8.985315 ATTGAAATGTAATTCATAGCTGAGGA 57.015 30.769 0.00 0.00 38.98 3.71
411 412 8.985315 TTGAAATGTAATTCATAGCTGAGGAT 57.015 30.769 0.00 0.00 38.98 3.24
424 425 8.777413 TCATAGCTGAGGATAAAATTTTGATCG 58.223 33.333 13.76 4.61 0.00 3.69
425 426 8.777413 CATAGCTGAGGATAAAATTTTGATCGA 58.223 33.333 13.76 0.00 0.00 3.59
426 427 7.630242 AGCTGAGGATAAAATTTTGATCGAA 57.370 32.000 13.76 0.00 0.00 3.71
427 428 7.701445 AGCTGAGGATAAAATTTTGATCGAAG 58.299 34.615 13.76 6.01 0.00 3.79
428 429 6.914757 GCTGAGGATAAAATTTTGATCGAAGG 59.085 38.462 13.76 0.00 0.00 3.46
429 430 6.795399 TGAGGATAAAATTTTGATCGAAGGC 58.205 36.000 13.76 1.37 0.00 4.35
430 431 6.376864 TGAGGATAAAATTTTGATCGAAGGCA 59.623 34.615 13.76 5.14 0.00 4.75
431 432 7.068593 TGAGGATAAAATTTTGATCGAAGGCAT 59.931 33.333 13.76 0.00 0.00 4.40
432 433 7.205297 AGGATAAAATTTTGATCGAAGGCATG 58.795 34.615 13.76 0.00 0.00 4.06
433 434 6.980397 GGATAAAATTTTGATCGAAGGCATGT 59.020 34.615 13.76 0.00 0.00 3.21
434 435 7.168135 GGATAAAATTTTGATCGAAGGCATGTC 59.832 37.037 13.76 0.00 0.00 3.06
435 436 4.376340 AATTTTGATCGAAGGCATGTCC 57.624 40.909 0.00 0.00 0.00 4.02
436 437 2.488204 TTTGATCGAAGGCATGTCCA 57.512 45.000 8.58 0.00 37.29 4.02
437 438 2.488204 TTGATCGAAGGCATGTCCAA 57.512 45.000 8.58 0.00 37.29 3.53
438 439 2.488204 TGATCGAAGGCATGTCCAAA 57.512 45.000 8.58 0.00 37.29 3.28
439 440 2.789213 TGATCGAAGGCATGTCCAAAA 58.211 42.857 8.58 0.00 37.29 2.44
440 441 3.355378 TGATCGAAGGCATGTCCAAAAT 58.645 40.909 8.58 0.00 37.29 1.82
441 442 3.129113 TGATCGAAGGCATGTCCAAAATG 59.871 43.478 8.58 0.00 37.29 2.32
442 443 2.513753 TCGAAGGCATGTCCAAAATGT 58.486 42.857 8.58 0.00 37.29 2.71
443 444 2.487762 TCGAAGGCATGTCCAAAATGTC 59.512 45.455 8.58 0.00 37.29 3.06
444 445 2.228582 CGAAGGCATGTCCAAAATGTCA 59.771 45.455 8.58 0.00 37.29 3.58
445 446 3.578688 GAAGGCATGTCCAAAATGTCAC 58.421 45.455 8.58 0.00 37.29 3.67
446 447 2.596346 AGGCATGTCCAAAATGTCACA 58.404 42.857 8.58 0.00 37.29 3.58
447 448 3.167485 AGGCATGTCCAAAATGTCACAT 58.833 40.909 8.58 0.00 37.29 3.21
448 449 3.056393 AGGCATGTCCAAAATGTCACATG 60.056 43.478 6.54 6.54 45.98 3.21
449 450 3.306225 GGCATGTCCAAAATGTCACATGT 60.306 43.478 11.45 0.00 45.31 3.21
450 451 4.309099 GCATGTCCAAAATGTCACATGTT 58.691 39.130 11.45 0.00 45.31 2.71
451 452 4.751098 GCATGTCCAAAATGTCACATGTTT 59.249 37.500 11.45 0.00 45.31 2.83
452 453 5.333492 GCATGTCCAAAATGTCACATGTTTG 60.333 40.000 13.97 13.97 45.31 2.93
453 454 5.336150 TGTCCAAAATGTCACATGTTTGT 57.664 34.783 17.12 0.00 36.15 2.83
469 470 8.703604 ACATGTTTGTGATATGTACAGAGTAC 57.296 34.615 0.33 0.89 38.19 2.73
470 471 7.488150 ACATGTTTGTGATATGTACAGAGTACG 59.512 37.037 0.33 0.00 38.19 3.67
471 472 7.148355 TGTTTGTGATATGTACAGAGTACGA 57.852 36.000 0.33 0.00 0.00 3.43
472 473 7.595604 TGTTTGTGATATGTACAGAGTACGAA 58.404 34.615 0.33 3.85 0.00 3.85
473 474 8.083462 TGTTTGTGATATGTACAGAGTACGAAA 58.917 33.333 0.33 2.24 0.00 3.46
474 475 8.918658 GTTTGTGATATGTACAGAGTACGAAAA 58.081 33.333 0.33 0.00 0.00 2.29
475 476 9.647797 TTTGTGATATGTACAGAGTACGAAAAT 57.352 29.630 0.33 0.00 0.00 1.82
476 477 9.647797 TTGTGATATGTACAGAGTACGAAAATT 57.352 29.630 0.33 0.00 0.00 1.82
477 478 9.647797 TGTGATATGTACAGAGTACGAAAATTT 57.352 29.630 0.33 0.00 0.00 1.82
478 479 9.901724 GTGATATGTACAGAGTACGAAAATTTG 57.098 33.333 0.33 0.00 0.00 2.32
479 480 9.093970 TGATATGTACAGAGTACGAAAATTTGG 57.906 33.333 0.33 0.00 0.00 3.28
480 481 9.095065 GATATGTACAGAGTACGAAAATTTGGT 57.905 33.333 0.33 0.00 0.00 3.67
481 482 7.739498 ATGTACAGAGTACGAAAATTTGGTT 57.261 32.000 0.33 0.00 0.00 3.67
482 483 6.950545 TGTACAGAGTACGAAAATTTGGTTG 58.049 36.000 0.00 0.00 0.00 3.77
483 484 6.762187 TGTACAGAGTACGAAAATTTGGTTGA 59.238 34.615 0.00 0.00 0.00 3.18
484 485 6.877611 ACAGAGTACGAAAATTTGGTTGAT 57.122 33.333 0.00 0.00 0.00 2.57
485 486 7.972832 ACAGAGTACGAAAATTTGGTTGATA 57.027 32.000 0.00 0.00 0.00 2.15
486 487 8.029642 ACAGAGTACGAAAATTTGGTTGATAG 57.970 34.615 0.00 0.00 0.00 2.08
487 488 7.119262 ACAGAGTACGAAAATTTGGTTGATAGG 59.881 37.037 0.00 0.00 0.00 2.57
488 489 6.093633 AGAGTACGAAAATTTGGTTGATAGGC 59.906 38.462 0.00 0.00 0.00 3.93
489 490 5.708230 AGTACGAAAATTTGGTTGATAGGCA 59.292 36.000 0.00 0.00 0.00 4.75
490 491 5.659440 ACGAAAATTTGGTTGATAGGCAT 57.341 34.783 0.00 0.00 0.00 4.40
491 492 5.410067 ACGAAAATTTGGTTGATAGGCATG 58.590 37.500 0.00 0.00 0.00 4.06
492 493 5.047377 ACGAAAATTTGGTTGATAGGCATGT 60.047 36.000 0.00 0.00 0.00 3.21
493 494 6.151985 ACGAAAATTTGGTTGATAGGCATGTA 59.848 34.615 0.00 0.00 0.00 2.29
494 495 6.472163 CGAAAATTTGGTTGATAGGCATGTAC 59.528 38.462 0.00 0.00 0.00 2.90
495 496 6.849085 AAATTTGGTTGATAGGCATGTACA 57.151 33.333 0.00 0.00 0.00 2.90
496 497 6.849085 AATTTGGTTGATAGGCATGTACAA 57.151 33.333 0.00 0.00 0.00 2.41
497 498 6.849085 ATTTGGTTGATAGGCATGTACAAA 57.151 33.333 0.00 0.00 0.00 2.83
498 499 6.849085 TTTGGTTGATAGGCATGTACAAAT 57.151 33.333 0.00 0.00 0.00 2.32
499 500 7.946381 TTTGGTTGATAGGCATGTACAAATA 57.054 32.000 0.00 0.00 0.00 1.40
500 501 8.532186 TTTGGTTGATAGGCATGTACAAATAT 57.468 30.769 0.00 0.00 0.00 1.28
501 502 8.532186 TTGGTTGATAGGCATGTACAAATATT 57.468 30.769 0.00 0.00 0.00 1.28
502 503 8.532186 TGGTTGATAGGCATGTACAAATATTT 57.468 30.769 0.00 0.00 0.00 1.40
503 504 8.629158 TGGTTGATAGGCATGTACAAATATTTC 58.371 33.333 0.00 0.00 0.00 2.17
504 505 8.850156 GGTTGATAGGCATGTACAAATATTTCT 58.150 33.333 0.00 0.00 0.00 2.52
507 508 8.352201 TGATAGGCATGTACAAATATTTCTTGC 58.648 33.333 0.00 13.53 0.00 4.01
508 509 5.581605 AGGCATGTACAAATATTTCTTGCG 58.418 37.500 0.00 2.13 32.55 4.85
509 510 5.356751 AGGCATGTACAAATATTTCTTGCGA 59.643 36.000 0.00 0.00 32.55 5.10
510 511 6.039717 AGGCATGTACAAATATTTCTTGCGAT 59.960 34.615 0.00 7.71 32.55 4.58
511 512 6.360681 GGCATGTACAAATATTTCTTGCGATC 59.639 38.462 0.00 0.00 32.55 3.69
512 513 6.912051 GCATGTACAAATATTTCTTGCGATCA 59.088 34.615 0.00 0.00 0.00 2.92
513 514 7.431960 GCATGTACAAATATTTCTTGCGATCAA 59.568 33.333 0.00 0.00 0.00 2.57
514 515 9.288124 CATGTACAAATATTTCTTGCGATCAAA 57.712 29.630 0.00 0.00 0.00 2.69
515 516 8.894409 TGTACAAATATTTCTTGCGATCAAAG 57.106 30.769 0.00 0.00 0.00 2.77
516 517 8.726068 TGTACAAATATTTCTTGCGATCAAAGA 58.274 29.630 0.00 4.17 0.00 2.52
517 518 9.554724 GTACAAATATTTCTTGCGATCAAAGAA 57.445 29.630 13.83 13.83 0.00 2.52
519 520 9.079833 ACAAATATTTCTTGCGATCAAAGAATG 57.920 29.630 17.02 14.52 0.00 2.67
520 521 8.537223 CAAATATTTCTTGCGATCAAAGAATGG 58.463 33.333 17.02 2.08 0.00 3.16
521 522 5.902613 ATTTCTTGCGATCAAAGAATGGA 57.097 34.783 17.02 7.10 0.00 3.41
522 523 5.902613 TTTCTTGCGATCAAAGAATGGAT 57.097 34.783 17.02 0.00 0.00 3.41
523 524 7.572523 ATTTCTTGCGATCAAAGAATGGATA 57.427 32.000 17.02 6.56 0.00 2.59
524 525 7.389803 TTTCTTGCGATCAAAGAATGGATAA 57.610 32.000 17.02 3.65 0.00 1.75
525 526 7.389803 TTCTTGCGATCAAAGAATGGATAAA 57.610 32.000 13.83 0.00 0.00 1.40
526 527 6.785191 TCTTGCGATCAAAGAATGGATAAAC 58.215 36.000 5.56 0.00 0.00 2.01
527 528 6.599244 TCTTGCGATCAAAGAATGGATAAACT 59.401 34.615 5.56 0.00 0.00 2.66
528 529 6.757897 TGCGATCAAAGAATGGATAAACTT 57.242 33.333 0.00 0.00 0.00 2.66
529 530 7.156876 TGCGATCAAAGAATGGATAAACTTT 57.843 32.000 0.00 0.00 33.69 2.66
530 531 7.601856 TGCGATCAAAGAATGGATAAACTTTT 58.398 30.769 0.00 0.00 31.52 2.27
531 532 7.541783 TGCGATCAAAGAATGGATAAACTTTTG 59.458 33.333 0.00 0.00 31.52 2.44
532 533 7.754924 GCGATCAAAGAATGGATAAACTTTTGA 59.245 33.333 0.00 0.00 31.52 2.69
533 534 9.624697 CGATCAAAGAATGGATAAACTTTTGAA 57.375 29.630 0.00 0.00 31.52 2.69
637 638 5.988310 TTATACGTTTCTCTCAGGGAACA 57.012 39.130 0.00 0.00 0.00 3.18
638 639 6.540438 TTATACGTTTCTCTCAGGGAACAT 57.460 37.500 0.00 0.00 0.00 2.71
639 640 7.649533 TTATACGTTTCTCTCAGGGAACATA 57.350 36.000 0.00 0.00 0.00 2.29
640 641 6.732896 ATACGTTTCTCTCAGGGAACATAT 57.267 37.500 0.00 0.00 0.00 1.78
641 642 5.422214 ACGTTTCTCTCAGGGAACATATT 57.578 39.130 0.00 0.00 0.00 1.28
642 643 6.540438 ACGTTTCTCTCAGGGAACATATTA 57.460 37.500 0.00 0.00 0.00 0.98
643 644 7.125792 ACGTTTCTCTCAGGGAACATATTAT 57.874 36.000 0.00 0.00 0.00 1.28
644 645 7.565680 ACGTTTCTCTCAGGGAACATATTATT 58.434 34.615 0.00 0.00 0.00 1.40
645 646 8.047310 ACGTTTCTCTCAGGGAACATATTATTT 58.953 33.333 0.00 0.00 0.00 1.40
646 647 9.542462 CGTTTCTCTCAGGGAACATATTATTTA 57.458 33.333 0.00 0.00 0.00 1.40
700 701 4.883083 TCGATGCTAGAATAAAAGCGGAT 58.117 39.130 0.00 0.00 41.77 4.18
707 708 8.445275 TGCTAGAATAAAAGCGGATATTTTGA 57.555 30.769 0.00 0.00 41.77 2.69
724 725 2.509052 TGAGTGTGTCTTTGTCCGAG 57.491 50.000 0.00 0.00 0.00 4.63
736 737 3.712907 TCCGAGGAAAAGGGCGGG 61.713 66.667 0.00 0.00 43.71 6.13
739 740 2.361230 GAGGAAAAGGGCGGGTGG 60.361 66.667 0.00 0.00 0.00 4.61
740 741 3.182996 AGGAAAAGGGCGGGTGGT 61.183 61.111 0.00 0.00 0.00 4.16
741 742 2.989253 GGAAAAGGGCGGGTGGTG 60.989 66.667 0.00 0.00 0.00 4.17
786 799 4.042311 GTCTCCTCTCCCTTCTTTTCCTTT 59.958 45.833 0.00 0.00 0.00 3.11
788 801 3.330998 TCCTCTCCCTTCTTTTCCTTTCC 59.669 47.826 0.00 0.00 0.00 3.13
789 802 3.332187 CCTCTCCCTTCTTTTCCTTTCCT 59.668 47.826 0.00 0.00 0.00 3.36
790 803 4.202620 CCTCTCCCTTCTTTTCCTTTCCTT 60.203 45.833 0.00 0.00 0.00 3.36
805 818 2.711311 CTTGCACCGCATCCATCG 59.289 61.111 0.00 0.00 38.76 3.84
826 839 1.516892 GACCCTCTGCTCTGCTCTG 59.483 63.158 0.00 0.00 0.00 3.35
827 840 1.229145 ACCCTCTGCTCTGCTCTGT 60.229 57.895 0.00 0.00 0.00 3.41
829 842 1.256361 CCCTCTGCTCTGCTCTGTCA 61.256 60.000 0.00 0.00 0.00 3.58
974 1022 1.079266 CTCAGGCTCAGACCACAGC 60.079 63.158 0.00 0.00 34.65 4.40
975 1023 1.824224 CTCAGGCTCAGACCACAGCA 61.824 60.000 0.00 0.00 37.38 4.41
976 1024 1.670406 CAGGCTCAGACCACAGCAC 60.670 63.158 0.00 0.00 37.38 4.40
977 1025 2.142761 AGGCTCAGACCACAGCACA 61.143 57.895 0.00 0.00 37.38 4.57
1003 1057 2.602694 GGATAAGCTCGCACTCGTACTC 60.603 54.545 0.00 0.00 36.96 2.59
1055 1113 1.298014 GAGCTCACACAAGGAGGGG 59.702 63.158 9.40 0.00 32.96 4.79
1278 1388 3.329386 CATCGATCCTGTGTGTTTCAGT 58.671 45.455 0.00 0.00 0.00 3.41
1304 1414 1.065126 GGCCAGCATGAACTACTCCTT 60.065 52.381 0.00 0.00 39.69 3.36
1310 1420 2.879756 GCATGAACTACTCCTTGGCCAA 60.880 50.000 19.25 19.25 0.00 4.52
1459 1587 2.584064 CCACGGTGCTGCCAGATA 59.416 61.111 1.68 0.00 36.97 1.98
1470 1598 1.029947 TGCCAGATAGCGACGAGACA 61.030 55.000 0.00 0.00 34.65 3.41
1471 1599 0.317436 GCCAGATAGCGACGAGACAG 60.317 60.000 0.00 0.00 0.00 3.51
1677 1976 0.041238 AGGAGATGGAGGACGTGGAA 59.959 55.000 0.00 0.00 0.00 3.53
1709 2008 2.264480 CCTCACCGATGCCAACGA 59.736 61.111 0.00 0.00 0.00 3.85
1723 2022 2.109739 AACGACGGCAGCAACAACA 61.110 52.632 0.00 0.00 0.00 3.33
1725 2024 1.654137 CGACGGCAGCAACAACAAC 60.654 57.895 0.00 0.00 0.00 3.32
1726 2025 1.727467 GACGGCAGCAACAACAACT 59.273 52.632 0.00 0.00 0.00 3.16
1727 2026 0.941542 GACGGCAGCAACAACAACTA 59.058 50.000 0.00 0.00 0.00 2.24
1728 2027 0.944386 ACGGCAGCAACAACAACTAG 59.056 50.000 0.00 0.00 0.00 2.57
1729 2028 0.385974 CGGCAGCAACAACAACTAGC 60.386 55.000 0.00 0.00 0.00 3.42
1730 2029 0.667993 GGCAGCAACAACAACTAGCA 59.332 50.000 0.00 0.00 0.00 3.49
1731 2030 1.335324 GGCAGCAACAACAACTAGCAG 60.335 52.381 0.00 0.00 0.00 4.24
1733 2032 1.605710 CAGCAACAACAACTAGCAGCT 59.394 47.619 0.00 0.00 0.00 4.24
1734 2033 1.605710 AGCAACAACAACTAGCAGCTG 59.394 47.619 10.11 10.11 0.00 4.24
1735 2034 1.927710 GCAACAACAACTAGCAGCTGC 60.928 52.381 31.53 31.53 42.49 5.25
1736 2035 1.334556 CAACAACAACTAGCAGCTGCA 59.665 47.619 38.24 23.25 45.16 4.41
1740 2039 2.807967 CAACAACTAGCAGCTGCAAGTA 59.192 45.455 38.24 21.83 45.16 2.24
1742 2041 1.396301 CAACTAGCAGCTGCAAGTAGC 59.604 52.381 38.24 11.88 45.16 3.58
1749 2048 1.726265 GCTGCAAGTAGCTCCATGC 59.274 57.895 0.00 0.00 45.94 4.06
1750 2049 1.722636 GCTGCAAGTAGCTCCATGCC 61.723 60.000 3.97 0.00 45.94 4.40
1751 2050 0.107312 CTGCAAGTAGCTCCATGCCT 60.107 55.000 3.97 0.00 45.94 4.75
1752 2051 0.107508 TGCAAGTAGCTCCATGCCTC 60.108 55.000 3.97 0.00 45.94 4.70
1753 2052 0.817229 GCAAGTAGCTCCATGCCTCC 60.817 60.000 0.00 0.00 44.23 4.30
1754 2053 0.543277 CAAGTAGCTCCATGCCTCCA 59.457 55.000 0.00 0.00 44.23 3.86
1755 2054 1.142465 CAAGTAGCTCCATGCCTCCAT 59.858 52.381 0.00 0.00 44.23 3.41
1756 2055 1.055040 AGTAGCTCCATGCCTCCATC 58.945 55.000 0.00 0.00 44.23 3.51
1757 2056 0.761187 GTAGCTCCATGCCTCCATCA 59.239 55.000 0.00 0.00 44.23 3.07
1758 2057 1.141657 GTAGCTCCATGCCTCCATCAA 59.858 52.381 0.00 0.00 44.23 2.57
1759 2058 0.851469 AGCTCCATGCCTCCATCAAT 59.149 50.000 0.00 0.00 44.23 2.57
1782 2081 3.511934 CAGAGGCCTGTAGTAGTTTCAGT 59.488 47.826 12.00 0.00 35.70 3.41
1789 2088 6.267070 GCCTGTAGTAGTTTCAGTAAGCTAG 58.733 44.000 0.00 0.00 30.10 3.42
1796 2095 5.986501 AGTTTCAGTAAGCTAGCTAGTGT 57.013 39.130 19.70 12.26 0.00 3.55
1800 2099 4.590918 TCAGTAAGCTAGCTAGTGTCACT 58.409 43.478 19.70 10.99 0.00 3.41
1808 2107 0.318441 GCTAGTGTCACTGCCAGACA 59.682 55.000 16.03 0.00 43.23 3.41
1811 2110 3.640761 TGTCACTGCCAGACACCA 58.359 55.556 0.00 0.00 40.80 4.17
1814 2113 1.302752 TCACTGCCAGACACCATGC 60.303 57.895 0.00 0.00 0.00 4.06
1816 2115 0.036105 CACTGCCAGACACCATGCTA 60.036 55.000 0.00 0.00 0.00 3.49
1817 2116 0.914644 ACTGCCAGACACCATGCTAT 59.085 50.000 0.00 0.00 0.00 2.97
1818 2117 1.306148 CTGCCAGACACCATGCTATG 58.694 55.000 0.00 0.00 0.00 2.23
1847 2146 8.356000 AGTAGCTAGAATAAAGAGTGAAGTGT 57.644 34.615 0.00 0.00 0.00 3.55
1851 2150 9.463902 AGCTAGAATAAAGAGTGAAGTGTACTA 57.536 33.333 0.00 0.00 0.00 1.82
1895 2194 2.431057 GGTGTCACATAGGTCCTCGAAT 59.569 50.000 5.12 0.00 0.00 3.34
1920 2219 8.801882 TTATGAAAATCGTCATTTAGGTCCTT 57.198 30.769 0.00 0.00 39.07 3.36
2225 2529 3.066203 AGTTCGCGAACCACAAAAATTCT 59.934 39.130 40.01 19.85 42.06 2.40
2352 2656 6.911484 ATTCATCGTTCGTGAACATTTTTC 57.089 33.333 12.76 0.00 41.20 2.29
2639 2948 3.310227 TGACATTTTTACTGTTCACGCGT 59.690 39.130 5.58 5.58 0.00 6.01
2770 3080 6.033831 CGTACTGTTACGGTTACTGTTTATGG 59.966 42.308 13.57 0.00 46.18 2.74
2847 3158 7.618512 ACTTACTGCACTTTAAGGACCTAGATA 59.381 37.037 0.00 0.00 30.73 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.612486 TTGTGGGACCTATATCTTGTAAACTA 57.388 34.615 0.00 0.00 0.00 2.24
1 2 7.504926 TTGTGGGACCTATATCTTGTAAACT 57.495 36.000 0.00 0.00 0.00 2.66
4 5 9.387397 TCATATTGTGGGACCTATATCTTGTAA 57.613 33.333 0.00 0.00 0.00 2.41
5 6 8.966155 TCATATTGTGGGACCTATATCTTGTA 57.034 34.615 0.00 0.00 0.00 2.41
6 7 7.872061 TCATATTGTGGGACCTATATCTTGT 57.128 36.000 0.00 0.00 0.00 3.16
7 8 9.745018 AAATCATATTGTGGGACCTATATCTTG 57.255 33.333 0.00 0.00 0.00 3.02
47 48 9.403110 GCACAATTCATCTAACAAATGGATATC 57.597 33.333 0.00 0.00 0.00 1.63
48 49 9.139734 AGCACAATTCATCTAACAAATGGATAT 57.860 29.630 0.00 0.00 0.00 1.63
49 50 8.523915 AGCACAATTCATCTAACAAATGGATA 57.476 30.769 0.00 0.00 0.00 2.59
50 51 7.414222 AGCACAATTCATCTAACAAATGGAT 57.586 32.000 0.00 0.00 0.00 3.41
51 52 6.839124 AGCACAATTCATCTAACAAATGGA 57.161 33.333 0.00 0.00 0.00 3.41
52 53 7.318141 AGAAGCACAATTCATCTAACAAATGG 58.682 34.615 0.00 0.00 0.00 3.16
53 54 8.752766 AAGAAGCACAATTCATCTAACAAATG 57.247 30.769 0.00 0.00 0.00 2.32
64 65 9.844790 CAACATCTTATAAAGAAGCACAATTCA 57.155 29.630 0.00 0.00 41.63 2.57
65 66 9.294030 CCAACATCTTATAAAGAAGCACAATTC 57.706 33.333 0.00 0.00 41.63 2.17
66 67 8.806146 ACCAACATCTTATAAAGAAGCACAATT 58.194 29.630 0.00 0.00 41.63 2.32
67 68 8.353423 ACCAACATCTTATAAAGAAGCACAAT 57.647 30.769 0.00 0.00 41.63 2.71
68 69 7.759489 ACCAACATCTTATAAAGAAGCACAA 57.241 32.000 0.00 0.00 41.63 3.33
69 70 9.461312 AATACCAACATCTTATAAAGAAGCACA 57.539 29.630 0.00 0.00 41.63 4.57
85 86 8.893727 GCATTAGAACTGACTAAATACCAACAT 58.106 33.333 0.00 0.00 36.23 2.71
86 87 7.335924 GGCATTAGAACTGACTAAATACCAACA 59.664 37.037 0.00 0.00 36.23 3.33
87 88 7.335924 TGGCATTAGAACTGACTAAATACCAAC 59.664 37.037 0.00 0.00 36.23 3.77
88 89 7.398829 TGGCATTAGAACTGACTAAATACCAA 58.601 34.615 0.00 0.00 36.23 3.67
89 90 6.953101 TGGCATTAGAACTGACTAAATACCA 58.047 36.000 0.00 0.00 36.23 3.25
90 91 7.859325 TTGGCATTAGAACTGACTAAATACC 57.141 36.000 0.00 0.00 36.23 2.73
91 92 9.774742 CTTTTGGCATTAGAACTGACTAAATAC 57.225 33.333 0.00 0.00 36.23 1.89
92 93 8.458843 GCTTTTGGCATTAGAACTGACTAAATA 58.541 33.333 0.00 0.00 41.35 1.40
93 94 7.315890 GCTTTTGGCATTAGAACTGACTAAAT 58.684 34.615 0.00 0.00 41.35 1.40
94 95 6.567701 CGCTTTTGGCATTAGAACTGACTAAA 60.568 38.462 0.00 0.00 41.91 1.85
95 96 5.106712 CGCTTTTGGCATTAGAACTGACTAA 60.107 40.000 0.00 0.00 41.91 2.24
96 97 4.391830 CGCTTTTGGCATTAGAACTGACTA 59.608 41.667 0.00 0.00 41.91 2.59
97 98 3.189287 CGCTTTTGGCATTAGAACTGACT 59.811 43.478 0.00 0.00 41.91 3.41
98 99 3.058224 ACGCTTTTGGCATTAGAACTGAC 60.058 43.478 0.00 0.00 41.91 3.51
99 100 3.146066 ACGCTTTTGGCATTAGAACTGA 58.854 40.909 0.00 0.00 41.91 3.41
100 101 3.559238 ACGCTTTTGGCATTAGAACTG 57.441 42.857 0.00 0.00 41.91 3.16
101 102 3.568007 TGAACGCTTTTGGCATTAGAACT 59.432 39.130 0.00 0.00 41.91 3.01
102 103 3.896122 TGAACGCTTTTGGCATTAGAAC 58.104 40.909 0.00 0.00 41.91 3.01
103 104 4.277174 TCTTGAACGCTTTTGGCATTAGAA 59.723 37.500 0.00 0.00 41.91 2.10
104 105 3.818210 TCTTGAACGCTTTTGGCATTAGA 59.182 39.130 0.00 0.00 41.91 2.10
105 106 4.159377 TCTTGAACGCTTTTGGCATTAG 57.841 40.909 0.00 0.00 41.91 1.73
106 107 4.576216 TTCTTGAACGCTTTTGGCATTA 57.424 36.364 0.00 0.00 41.91 1.90
107 108 3.451141 TTCTTGAACGCTTTTGGCATT 57.549 38.095 0.00 0.00 41.91 3.56
108 109 3.451141 TTTCTTGAACGCTTTTGGCAT 57.549 38.095 0.00 0.00 41.91 4.40
109 110 2.949451 TTTCTTGAACGCTTTTGGCA 57.051 40.000 0.00 0.00 41.91 4.92
110 111 4.794248 ATTTTTCTTGAACGCTTTTGGC 57.206 36.364 0.00 0.00 37.64 4.52
111 112 8.742554 ATAGTATTTTTCTTGAACGCTTTTGG 57.257 30.769 0.00 0.00 0.00 3.28
114 115 9.406828 GGAAATAGTATTTTTCTTGAACGCTTT 57.593 29.630 9.47 0.00 34.29 3.51
115 116 8.573035 TGGAAATAGTATTTTTCTTGAACGCTT 58.427 29.630 9.47 0.00 34.29 4.68
116 117 8.106247 TGGAAATAGTATTTTTCTTGAACGCT 57.894 30.769 9.47 0.00 34.29 5.07
117 118 8.736751 TTGGAAATAGTATTTTTCTTGAACGC 57.263 30.769 9.47 0.00 34.29 4.84
142 143 8.547894 GTGAAAAAGGATAATTCAACGCTTTTT 58.452 29.630 0.00 0.00 35.07 1.94
143 144 7.170828 GGTGAAAAAGGATAATTCAACGCTTTT 59.829 33.333 0.00 0.00 35.07 2.27
144 145 6.645003 GGTGAAAAAGGATAATTCAACGCTTT 59.355 34.615 0.00 0.00 35.07 3.51
145 146 6.156519 GGTGAAAAAGGATAATTCAACGCTT 58.843 36.000 0.00 0.00 35.07 4.68
146 147 5.242838 TGGTGAAAAAGGATAATTCAACGCT 59.757 36.000 0.00 0.00 42.34 5.07
147 148 5.344933 GTGGTGAAAAAGGATAATTCAACGC 59.655 40.000 1.21 1.21 42.34 4.84
148 149 6.582295 CAGTGGTGAAAAAGGATAATTCAACG 59.418 38.462 0.00 0.00 42.34 4.10
149 150 7.433680 ACAGTGGTGAAAAAGGATAATTCAAC 58.566 34.615 0.00 0.00 40.38 3.18
150 151 7.595819 ACAGTGGTGAAAAAGGATAATTCAA 57.404 32.000 0.00 0.00 35.07 2.69
167 168 2.510906 GTCACCCTGCACAGTGGT 59.489 61.111 10.63 5.33 34.67 4.16
168 169 2.281761 GGTCACCCTGCACAGTGG 60.282 66.667 10.63 0.74 34.67 4.00
169 170 2.831770 AGGTCACCCTGCACAGTG 59.168 61.111 5.20 5.20 40.58 3.66
177 178 2.227036 CCTTCAGGCAGGTCACCCT 61.227 63.158 0.00 0.00 44.02 4.34
178 179 2.352805 CCTTCAGGCAGGTCACCC 59.647 66.667 0.00 0.00 0.00 4.61
179 180 3.161557 ACCTTCAGGCAGGTCACC 58.838 61.111 0.00 0.00 44.63 4.02
184 185 2.276732 TTTCTTGACCTTCAGGCAGG 57.723 50.000 0.00 0.00 39.32 4.85
185 186 4.142816 CGTTATTTCTTGACCTTCAGGCAG 60.143 45.833 0.00 0.00 39.32 4.85
186 187 3.751175 CGTTATTTCTTGACCTTCAGGCA 59.249 43.478 0.00 0.00 39.32 4.75
187 188 3.127030 CCGTTATTTCTTGACCTTCAGGC 59.873 47.826 0.00 0.00 39.32 4.85
188 189 4.324267 ACCGTTATTTCTTGACCTTCAGG 58.676 43.478 0.00 0.00 42.17 3.86
189 190 7.386848 TCTTTACCGTTATTTCTTGACCTTCAG 59.613 37.037 0.00 0.00 0.00 3.02
190 191 7.218614 TCTTTACCGTTATTTCTTGACCTTCA 58.781 34.615 0.00 0.00 0.00 3.02
191 192 7.148457 CCTCTTTACCGTTATTTCTTGACCTTC 60.148 40.741 0.00 0.00 0.00 3.46
192 193 6.653740 CCTCTTTACCGTTATTTCTTGACCTT 59.346 38.462 0.00 0.00 0.00 3.50
193 194 6.171213 CCTCTTTACCGTTATTTCTTGACCT 58.829 40.000 0.00 0.00 0.00 3.85
194 195 5.163784 GCCTCTTTACCGTTATTTCTTGACC 60.164 44.000 0.00 0.00 0.00 4.02
195 196 5.642491 AGCCTCTTTACCGTTATTTCTTGAC 59.358 40.000 0.00 0.00 0.00 3.18
196 197 5.801380 AGCCTCTTTACCGTTATTTCTTGA 58.199 37.500 0.00 0.00 0.00 3.02
197 198 5.875359 AGAGCCTCTTTACCGTTATTTCTTG 59.125 40.000 0.00 0.00 0.00 3.02
198 199 6.051179 AGAGCCTCTTTACCGTTATTTCTT 57.949 37.500 0.00 0.00 0.00 2.52
199 200 5.187186 TGAGAGCCTCTTTACCGTTATTTCT 59.813 40.000 0.00 0.00 0.00 2.52
200 201 5.291371 GTGAGAGCCTCTTTACCGTTATTTC 59.709 44.000 0.00 0.00 0.00 2.17
201 202 5.176592 GTGAGAGCCTCTTTACCGTTATTT 58.823 41.667 0.00 0.00 0.00 1.40
202 203 4.222145 TGTGAGAGCCTCTTTACCGTTATT 59.778 41.667 0.00 0.00 0.00 1.40
203 204 3.767673 TGTGAGAGCCTCTTTACCGTTAT 59.232 43.478 0.00 0.00 0.00 1.89
204 205 3.159472 TGTGAGAGCCTCTTTACCGTTA 58.841 45.455 0.00 0.00 0.00 3.18
205 206 1.968493 TGTGAGAGCCTCTTTACCGTT 59.032 47.619 0.00 0.00 0.00 4.44
206 207 1.546476 CTGTGAGAGCCTCTTTACCGT 59.454 52.381 0.00 0.00 0.00 4.83
207 208 1.819288 TCTGTGAGAGCCTCTTTACCG 59.181 52.381 0.00 0.00 0.00 4.02
208 209 2.829120 AGTCTGTGAGAGCCTCTTTACC 59.171 50.000 0.00 0.00 0.00 2.85
209 210 4.219725 AGAAGTCTGTGAGAGCCTCTTTAC 59.780 45.833 0.00 0.00 0.00 2.01
210 211 4.411927 AGAAGTCTGTGAGAGCCTCTTTA 58.588 43.478 0.00 0.00 0.00 1.85
211 212 3.238597 AGAAGTCTGTGAGAGCCTCTTT 58.761 45.455 0.00 0.00 0.00 2.52
212 213 2.888212 AGAAGTCTGTGAGAGCCTCTT 58.112 47.619 0.00 0.00 0.00 2.85
213 214 2.603075 AGAAGTCTGTGAGAGCCTCT 57.397 50.000 0.00 0.00 0.00 3.69
214 215 4.021894 TGTTTAGAAGTCTGTGAGAGCCTC 60.022 45.833 0.00 0.00 0.00 4.70
215 216 3.898123 TGTTTAGAAGTCTGTGAGAGCCT 59.102 43.478 0.00 0.00 0.00 4.58
216 217 4.258702 TGTTTAGAAGTCTGTGAGAGCC 57.741 45.455 0.00 0.00 0.00 4.70
217 218 4.688413 CCTTGTTTAGAAGTCTGTGAGAGC 59.312 45.833 0.00 0.00 0.00 4.09
218 219 6.090483 TCCTTGTTTAGAAGTCTGTGAGAG 57.910 41.667 0.00 0.00 0.00 3.20
219 220 6.479972 TTCCTTGTTTAGAAGTCTGTGAGA 57.520 37.500 0.00 0.00 0.00 3.27
220 221 8.307483 TCTATTCCTTGTTTAGAAGTCTGTGAG 58.693 37.037 0.00 0.00 0.00 3.51
221 222 8.190326 TCTATTCCTTGTTTAGAAGTCTGTGA 57.810 34.615 0.00 0.00 0.00 3.58
222 223 8.833231 TTCTATTCCTTGTTTAGAAGTCTGTG 57.167 34.615 0.00 0.00 30.55 3.66
223 224 8.871125 TCTTCTATTCCTTGTTTAGAAGTCTGT 58.129 33.333 14.98 0.00 44.68 3.41
224 225 9.364989 CTCTTCTATTCCTTGTTTAGAAGTCTG 57.635 37.037 14.98 6.79 44.68 3.51
225 226 9.095700 ACTCTTCTATTCCTTGTTTAGAAGTCT 57.904 33.333 14.98 3.52 44.68 3.24
226 227 9.713713 AACTCTTCTATTCCTTGTTTAGAAGTC 57.286 33.333 14.98 0.00 44.68 3.01
227 228 9.495572 CAACTCTTCTATTCCTTGTTTAGAAGT 57.504 33.333 14.98 0.25 44.68 3.01
228 229 9.712305 TCAACTCTTCTATTCCTTGTTTAGAAG 57.288 33.333 11.05 11.05 45.28 2.85
233 234 9.190317 AGTTTTCAACTCTTCTATTCCTTGTTT 57.810 29.630 0.00 0.00 37.02 2.83
234 235 8.624776 CAGTTTTCAACTCTTCTATTCCTTGTT 58.375 33.333 0.00 0.00 40.46 2.83
235 236 7.993183 TCAGTTTTCAACTCTTCTATTCCTTGT 59.007 33.333 0.00 0.00 40.46 3.16
236 237 8.383318 TCAGTTTTCAACTCTTCTATTCCTTG 57.617 34.615 0.00 0.00 40.46 3.61
237 238 7.174080 GCTCAGTTTTCAACTCTTCTATTCCTT 59.826 37.037 0.00 0.00 40.46 3.36
238 239 6.652900 GCTCAGTTTTCAACTCTTCTATTCCT 59.347 38.462 0.00 0.00 40.46 3.36
239 240 6.652900 AGCTCAGTTTTCAACTCTTCTATTCC 59.347 38.462 0.00 0.00 40.46 3.01
240 241 7.665561 AGCTCAGTTTTCAACTCTTCTATTC 57.334 36.000 0.00 0.00 40.46 1.75
241 242 7.716998 TCAAGCTCAGTTTTCAACTCTTCTATT 59.283 33.333 0.00 0.00 40.46 1.73
242 243 7.220030 TCAAGCTCAGTTTTCAACTCTTCTAT 58.780 34.615 0.00 0.00 40.46 1.98
243 244 6.582636 TCAAGCTCAGTTTTCAACTCTTCTA 58.417 36.000 0.00 0.00 40.46 2.10
244 245 5.431765 TCAAGCTCAGTTTTCAACTCTTCT 58.568 37.500 0.00 0.00 40.46 2.85
245 246 5.741388 TCAAGCTCAGTTTTCAACTCTTC 57.259 39.130 0.00 0.00 40.46 2.87
246 247 6.515272 TTTCAAGCTCAGTTTTCAACTCTT 57.485 33.333 0.00 0.00 40.46 2.85
247 248 6.705863 ATTTCAAGCTCAGTTTTCAACTCT 57.294 33.333 0.00 0.00 40.46 3.24
256 257 8.897752 GGTCAGATTTATATTTCAAGCTCAGTT 58.102 33.333 0.00 0.00 0.00 3.16
257 258 8.049117 TGGTCAGATTTATATTTCAAGCTCAGT 58.951 33.333 0.00 0.00 0.00 3.41
258 259 8.341173 GTGGTCAGATTTATATTTCAAGCTCAG 58.659 37.037 0.00 0.00 0.00 3.35
259 260 8.049117 AGTGGTCAGATTTATATTTCAAGCTCA 58.951 33.333 0.00 0.00 0.00 4.26
260 261 8.443953 AGTGGTCAGATTTATATTTCAAGCTC 57.556 34.615 0.00 0.00 0.00 4.09
261 262 9.905713 TTAGTGGTCAGATTTATATTTCAAGCT 57.094 29.630 0.00 0.00 0.00 3.74
262 263 9.937175 GTTAGTGGTCAGATTTATATTTCAAGC 57.063 33.333 0.00 0.00 0.00 4.01
276 277 9.470399 TGTAGACATATTAAGTTAGTGGTCAGA 57.530 33.333 11.75 1.56 0.00 3.27
286 287 9.802039 TCTTGGGTTTTGTAGACATATTAAGTT 57.198 29.630 0.00 0.00 0.00 2.66
287 288 9.449719 CTCTTGGGTTTTGTAGACATATTAAGT 57.550 33.333 0.00 0.00 0.00 2.24
288 289 9.667107 TCTCTTGGGTTTTGTAGACATATTAAG 57.333 33.333 0.00 0.00 0.00 1.85
349 350 9.878667 TTCAGAATTTGAATATCACAAATGCAT 57.121 25.926 19.52 0.00 43.94 3.96
350 351 9.708092 TTTCAGAATTTGAATATCACAAATGCA 57.292 25.926 19.52 0.00 44.90 3.96
384 385 9.412460 TCCTCAGCTATGAATTACATTTCAATT 57.588 29.630 0.00 0.00 38.98 2.32
385 386 8.985315 TCCTCAGCTATGAATTACATTTCAAT 57.015 30.769 0.00 0.00 38.98 2.57
386 387 8.985315 ATCCTCAGCTATGAATTACATTTCAA 57.015 30.769 0.00 0.00 38.98 2.69
398 399 8.777413 CGATCAAAATTTTATCCTCAGCTATGA 58.223 33.333 2.44 0.00 0.00 2.15
399 400 8.777413 TCGATCAAAATTTTATCCTCAGCTATG 58.223 33.333 2.44 0.00 0.00 2.23
400 401 8.908786 TCGATCAAAATTTTATCCTCAGCTAT 57.091 30.769 2.44 0.00 0.00 2.97
401 402 8.731275 TTCGATCAAAATTTTATCCTCAGCTA 57.269 30.769 2.44 0.00 0.00 3.32
402 403 7.201767 CCTTCGATCAAAATTTTATCCTCAGCT 60.202 37.037 2.44 0.00 0.00 4.24
403 404 6.914757 CCTTCGATCAAAATTTTATCCTCAGC 59.085 38.462 2.44 0.00 0.00 4.26
404 405 6.914757 GCCTTCGATCAAAATTTTATCCTCAG 59.085 38.462 2.44 0.00 0.00 3.35
405 406 6.376864 TGCCTTCGATCAAAATTTTATCCTCA 59.623 34.615 2.44 0.00 0.00 3.86
406 407 6.795399 TGCCTTCGATCAAAATTTTATCCTC 58.205 36.000 2.44 0.00 0.00 3.71
407 408 6.773976 TGCCTTCGATCAAAATTTTATCCT 57.226 33.333 2.44 0.00 0.00 3.24
408 409 6.980397 ACATGCCTTCGATCAAAATTTTATCC 59.020 34.615 2.44 0.00 0.00 2.59
409 410 7.168135 GGACATGCCTTCGATCAAAATTTTATC 59.832 37.037 2.44 6.69 0.00 1.75
410 411 6.980397 GGACATGCCTTCGATCAAAATTTTAT 59.020 34.615 2.44 0.00 0.00 1.40
411 412 6.071672 TGGACATGCCTTCGATCAAAATTTTA 60.072 34.615 2.44 0.00 37.63 1.52
412 413 5.170748 GGACATGCCTTCGATCAAAATTTT 58.829 37.500 0.00 0.00 0.00 1.82
413 414 4.220382 TGGACATGCCTTCGATCAAAATTT 59.780 37.500 7.54 0.00 37.63 1.82
414 415 3.763360 TGGACATGCCTTCGATCAAAATT 59.237 39.130 7.54 0.00 37.63 1.82
415 416 3.355378 TGGACATGCCTTCGATCAAAAT 58.645 40.909 7.54 0.00 37.63 1.82
416 417 2.789213 TGGACATGCCTTCGATCAAAA 58.211 42.857 7.54 0.00 37.63 2.44
417 418 2.488204 TGGACATGCCTTCGATCAAA 57.512 45.000 7.54 0.00 37.63 2.69
418 419 2.488204 TTGGACATGCCTTCGATCAA 57.512 45.000 7.54 0.00 37.63 2.57
419 420 2.488204 TTTGGACATGCCTTCGATCA 57.512 45.000 7.54 0.00 37.63 2.92
420 421 3.129287 ACATTTTGGACATGCCTTCGATC 59.871 43.478 7.54 0.00 37.63 3.69
421 422 3.091545 ACATTTTGGACATGCCTTCGAT 58.908 40.909 7.54 0.00 37.63 3.59
422 423 2.487762 GACATTTTGGACATGCCTTCGA 59.512 45.455 7.54 0.00 37.63 3.71
423 424 2.228582 TGACATTTTGGACATGCCTTCG 59.771 45.455 7.54 0.00 37.63 3.79
424 425 3.005684 TGTGACATTTTGGACATGCCTTC 59.994 43.478 7.54 0.00 37.63 3.46
425 426 2.964464 TGTGACATTTTGGACATGCCTT 59.036 40.909 7.54 0.00 37.63 4.35
426 427 2.596346 TGTGACATTTTGGACATGCCT 58.404 42.857 7.54 0.00 37.63 4.75
427 428 3.255725 CATGTGACATTTTGGACATGCC 58.744 45.455 0.00 0.00 36.35 4.40
428 429 3.916761 ACATGTGACATTTTGGACATGC 58.083 40.909 15.94 0.00 41.84 4.06
429 430 5.754406 ACAAACATGTGACATTTTGGACATG 59.246 36.000 23.67 15.05 42.83 3.21
430 431 5.754406 CACAAACATGTGACATTTTGGACAT 59.246 36.000 23.67 10.45 42.02 3.06
431 432 5.105595 TCACAAACATGTGACATTTTGGACA 60.106 36.000 23.67 12.63 43.09 4.02
432 433 5.347342 TCACAAACATGTGACATTTTGGAC 58.653 37.500 23.67 0.00 43.09 4.02
433 434 5.588958 TCACAAACATGTGACATTTTGGA 57.411 34.783 23.67 18.28 43.09 3.53
443 444 7.601073 ACTCTGTACATATCACAAACATGTG 57.399 36.000 0.00 2.60 40.90 3.21
444 445 7.488150 CGTACTCTGTACATATCACAAACATGT 59.512 37.037 0.00 0.00 36.82 3.21
445 446 7.700656 TCGTACTCTGTACATATCACAAACATG 59.299 37.037 0.00 0.00 0.00 3.21
446 447 7.768240 TCGTACTCTGTACATATCACAAACAT 58.232 34.615 0.00 0.00 0.00 2.71
447 448 7.148355 TCGTACTCTGTACATATCACAAACA 57.852 36.000 0.00 0.00 0.00 2.83
448 449 8.456904 TTTCGTACTCTGTACATATCACAAAC 57.543 34.615 0.00 0.00 0.00 2.93
449 450 9.647797 ATTTTCGTACTCTGTACATATCACAAA 57.352 29.630 0.00 0.00 0.00 2.83
450 451 9.647797 AATTTTCGTACTCTGTACATATCACAA 57.352 29.630 0.00 0.00 0.00 3.33
451 452 9.647797 AAATTTTCGTACTCTGTACATATCACA 57.352 29.630 0.00 0.00 0.00 3.58
452 453 9.901724 CAAATTTTCGTACTCTGTACATATCAC 57.098 33.333 0.00 0.00 0.00 3.06
453 454 9.093970 CCAAATTTTCGTACTCTGTACATATCA 57.906 33.333 0.00 0.00 0.00 2.15
454 455 9.095065 ACCAAATTTTCGTACTCTGTACATATC 57.905 33.333 0.00 0.00 0.00 1.63
455 456 9.444600 AACCAAATTTTCGTACTCTGTACATAT 57.555 29.630 0.00 0.00 0.00 1.78
456 457 8.714179 CAACCAAATTTTCGTACTCTGTACATA 58.286 33.333 0.00 0.00 0.00 2.29
457 458 7.442969 TCAACCAAATTTTCGTACTCTGTACAT 59.557 33.333 0.00 0.00 0.00 2.29
458 459 6.762187 TCAACCAAATTTTCGTACTCTGTACA 59.238 34.615 8.33 0.00 0.00 2.90
459 460 7.181143 TCAACCAAATTTTCGTACTCTGTAC 57.819 36.000 0.00 0.00 0.00 2.90
460 461 7.972832 ATCAACCAAATTTTCGTACTCTGTA 57.027 32.000 0.00 0.00 0.00 2.74
461 462 6.877611 ATCAACCAAATTTTCGTACTCTGT 57.122 33.333 0.00 0.00 0.00 3.41
462 463 7.464358 CCTATCAACCAAATTTTCGTACTCTG 58.536 38.462 0.00 0.00 0.00 3.35
463 464 6.093633 GCCTATCAACCAAATTTTCGTACTCT 59.906 38.462 0.00 0.00 0.00 3.24
464 465 6.128117 TGCCTATCAACCAAATTTTCGTACTC 60.128 38.462 0.00 0.00 0.00 2.59
465 466 5.708230 TGCCTATCAACCAAATTTTCGTACT 59.292 36.000 0.00 0.00 0.00 2.73
466 467 5.945155 TGCCTATCAACCAAATTTTCGTAC 58.055 37.500 0.00 0.00 0.00 3.67
467 468 6.151985 ACATGCCTATCAACCAAATTTTCGTA 59.848 34.615 0.00 0.00 0.00 3.43
468 469 5.047377 ACATGCCTATCAACCAAATTTTCGT 60.047 36.000 0.00 0.00 0.00 3.85
469 470 5.410067 ACATGCCTATCAACCAAATTTTCG 58.590 37.500 0.00 0.00 0.00 3.46
470 471 7.319646 TGTACATGCCTATCAACCAAATTTTC 58.680 34.615 0.00 0.00 0.00 2.29
471 472 7.238486 TGTACATGCCTATCAACCAAATTTT 57.762 32.000 0.00 0.00 0.00 1.82
472 473 6.849085 TGTACATGCCTATCAACCAAATTT 57.151 33.333 0.00 0.00 0.00 1.82
473 474 6.849085 TTGTACATGCCTATCAACCAAATT 57.151 33.333 0.00 0.00 0.00 1.82
474 475 6.849085 TTTGTACATGCCTATCAACCAAAT 57.151 33.333 0.00 0.00 0.00 2.32
475 476 6.849085 ATTTGTACATGCCTATCAACCAAA 57.151 33.333 0.00 0.00 0.00 3.28
476 477 8.532186 AATATTTGTACATGCCTATCAACCAA 57.468 30.769 0.00 0.00 0.00 3.67
477 478 8.532186 AAATATTTGTACATGCCTATCAACCA 57.468 30.769 0.00 0.00 0.00 3.67
478 479 8.850156 AGAAATATTTGTACATGCCTATCAACC 58.150 33.333 5.17 0.00 0.00 3.77
481 482 8.352201 GCAAGAAATATTTGTACATGCCTATCA 58.648 33.333 5.17 0.00 0.00 2.15
482 483 7.535258 CGCAAGAAATATTTGTACATGCCTATC 59.465 37.037 5.17 0.00 43.02 2.08
483 484 7.362662 CGCAAGAAATATTTGTACATGCCTAT 58.637 34.615 5.17 0.00 43.02 2.57
484 485 6.724263 CGCAAGAAATATTTGTACATGCCTA 58.276 36.000 5.17 0.00 43.02 3.93
485 486 5.581605 CGCAAGAAATATTTGTACATGCCT 58.418 37.500 5.17 0.00 43.02 4.75
486 487 5.871531 CGCAAGAAATATTTGTACATGCC 57.128 39.130 5.17 0.00 43.02 4.40
503 504 6.789262 AGTTTATCCATTCTTTGATCGCAAG 58.211 36.000 0.00 0.00 35.04 4.01
504 505 6.757897 AGTTTATCCATTCTTTGATCGCAA 57.242 33.333 0.00 0.00 0.00 4.85
505 506 6.757897 AAGTTTATCCATTCTTTGATCGCA 57.242 33.333 0.00 0.00 0.00 5.10
506 507 7.754924 TCAAAAGTTTATCCATTCTTTGATCGC 59.245 33.333 0.00 0.00 31.75 4.58
507 508 9.624697 TTCAAAAGTTTATCCATTCTTTGATCG 57.375 29.630 0.00 0.00 31.75 3.69
611 612 9.358406 TGTTCCCTGAGAGAAACGTATAATATA 57.642 33.333 0.00 0.00 0.00 0.86
612 613 8.246430 TGTTCCCTGAGAGAAACGTATAATAT 57.754 34.615 0.00 0.00 0.00 1.28
613 614 7.649533 TGTTCCCTGAGAGAAACGTATAATA 57.350 36.000 0.00 0.00 0.00 0.98
614 615 6.540438 TGTTCCCTGAGAGAAACGTATAAT 57.460 37.500 0.00 0.00 0.00 1.28
615 616 5.988310 TGTTCCCTGAGAGAAACGTATAA 57.012 39.130 0.00 0.00 0.00 0.98
616 617 7.834881 ATATGTTCCCTGAGAGAAACGTATA 57.165 36.000 0.00 0.00 0.00 1.47
617 618 6.732896 ATATGTTCCCTGAGAGAAACGTAT 57.267 37.500 0.00 0.00 0.00 3.06
618 619 6.540438 AATATGTTCCCTGAGAGAAACGTA 57.460 37.500 0.00 0.00 0.00 3.57
619 620 5.422214 AATATGTTCCCTGAGAGAAACGT 57.578 39.130 0.00 0.00 0.00 3.99
620 621 8.438676 AAATAATATGTTCCCTGAGAGAAACG 57.561 34.615 0.00 0.00 0.00 3.60
651 652 9.851686 TGCTAGAACAAAATCACCTAATATCAT 57.148 29.630 0.00 0.00 0.00 2.45
652 653 9.851686 ATGCTAGAACAAAATCACCTAATATCA 57.148 29.630 0.00 0.00 0.00 2.15
654 655 8.993121 CGATGCTAGAACAAAATCACCTAATAT 58.007 33.333 0.00 0.00 0.00 1.28
655 656 8.201464 TCGATGCTAGAACAAAATCACCTAATA 58.799 33.333 0.00 0.00 0.00 0.98
656 657 7.047891 TCGATGCTAGAACAAAATCACCTAAT 58.952 34.615 0.00 0.00 0.00 1.73
657 658 6.403049 TCGATGCTAGAACAAAATCACCTAA 58.597 36.000 0.00 0.00 0.00 2.69
658 659 5.972935 TCGATGCTAGAACAAAATCACCTA 58.027 37.500 0.00 0.00 0.00 3.08
659 660 4.832248 TCGATGCTAGAACAAAATCACCT 58.168 39.130 0.00 0.00 0.00 4.00
660 661 5.505286 CATCGATGCTAGAACAAAATCACC 58.495 41.667 13.37 0.00 0.00 4.02
686 687 8.184192 CACACTCAAAATATCCGCTTTTATTCT 58.816 33.333 0.00 0.00 0.00 2.40
700 701 5.361427 TCGGACAAAGACACACTCAAAATA 58.639 37.500 0.00 0.00 0.00 1.40
707 708 1.410004 TCCTCGGACAAAGACACACT 58.590 50.000 0.00 0.00 0.00 3.55
724 725 2.989253 CACCACCCGCCCTTTTCC 60.989 66.667 0.00 0.00 0.00 3.13
786 799 1.451927 GATGGATGCGGTGCAAGGA 60.452 57.895 0.00 0.00 43.62 3.36
788 801 2.711311 CGATGGATGCGGTGCAAG 59.289 61.111 0.00 0.00 43.62 4.01
789 802 3.507924 GCGATGGATGCGGTGCAA 61.508 61.111 0.00 0.00 43.62 4.08
826 839 0.647410 CGCCATTGACGAGACATGAC 59.353 55.000 0.00 0.00 0.00 3.06
827 840 1.083806 GCGCCATTGACGAGACATGA 61.084 55.000 0.00 0.00 0.00 3.07
829 842 1.815421 GGCGCCATTGACGAGACAT 60.815 57.895 24.80 0.00 0.00 3.06
888 927 4.466567 TTTATTTACTGCCATCGATGCG 57.533 40.909 20.25 13.83 0.00 4.73
930 969 1.405661 GGTCTTCTTCTTACCCCTGCG 60.406 57.143 0.00 0.00 0.00 5.18
931 970 1.909986 AGGTCTTCTTCTTACCCCTGC 59.090 52.381 0.00 0.00 33.53 4.85
938 977 4.884744 CCTGAGATCGAGGTCTTCTTCTTA 59.115 45.833 5.81 0.00 0.00 2.10
939 978 3.699038 CCTGAGATCGAGGTCTTCTTCTT 59.301 47.826 5.81 0.00 0.00 2.52
940 979 3.287222 CCTGAGATCGAGGTCTTCTTCT 58.713 50.000 5.81 0.00 0.00 2.85
1003 1057 0.676151 GGACAAAGCAGAGCAGGAGG 60.676 60.000 0.00 0.00 0.00 4.30
1055 1113 0.602562 CAGATCGATGGAGCTCCCTC 59.397 60.000 29.95 26.71 36.62 4.30
1242 1342 0.591659 CGATGCTGCCATGAATGAGG 59.408 55.000 0.00 0.00 0.00 3.86
1278 1388 3.407083 TTCATGCTGGCCCCGCTA 61.407 61.111 14.34 2.96 0.00 4.26
1297 1407 2.047655 CGCGTTGGCCAAGGAGTA 60.048 61.111 35.99 5.27 35.02 2.59
1392 1517 1.371267 CACCTCGACGTTCTTGCGA 60.371 57.895 0.00 0.00 35.59 5.10
1691 1990 3.499737 CGTTGGCATCGGTGAGGC 61.500 66.667 10.02 0.00 38.72 4.70
1709 2008 0.944386 CTAGTTGTTGTTGCTGCCGT 59.056 50.000 0.00 0.00 0.00 5.68
1731 2030 1.722636 GGCATGGAGCTACTTGCAGC 61.723 60.000 31.38 15.98 45.94 5.25
1733 2032 0.107508 GAGGCATGGAGCTACTTGCA 60.108 55.000 31.38 3.15 45.94 4.08
1734 2033 0.817229 GGAGGCATGGAGCTACTTGC 60.817 60.000 25.06 25.06 44.79 4.01
1735 2034 0.543277 TGGAGGCATGGAGCTACTTG 59.457 55.000 7.47 7.47 44.79 3.16
1736 2035 1.419387 GATGGAGGCATGGAGCTACTT 59.581 52.381 0.00 0.00 44.79 2.24
1740 2039 0.851469 ATTGATGGAGGCATGGAGCT 59.149 50.000 0.00 0.00 44.79 4.09
1742 2041 2.105993 TCTGATTGATGGAGGCATGGAG 59.894 50.000 0.00 0.00 0.00 3.86
1743 2042 2.105993 CTCTGATTGATGGAGGCATGGA 59.894 50.000 0.00 0.00 0.00 3.41
1744 2043 2.505405 CTCTGATTGATGGAGGCATGG 58.495 52.381 0.00 0.00 0.00 3.66
1746 2045 2.953284 CCTCTGATTGATGGAGGCAT 57.047 50.000 0.00 0.00 39.87 4.40
1749 2048 1.138568 AGGCCTCTGATTGATGGAGG 58.861 55.000 0.00 0.00 46.65 4.30
1750 2049 1.489649 ACAGGCCTCTGATTGATGGAG 59.510 52.381 0.00 0.00 43.49 3.86
1751 2050 1.588239 ACAGGCCTCTGATTGATGGA 58.412 50.000 0.00 0.00 43.49 3.41
1752 2051 2.437281 ACTACAGGCCTCTGATTGATGG 59.563 50.000 0.00 0.00 43.49 3.51
1753 2052 3.834489 ACTACAGGCCTCTGATTGATG 57.166 47.619 0.00 0.00 43.49 3.07
1754 2053 4.551671 ACTACTACAGGCCTCTGATTGAT 58.448 43.478 0.00 0.00 43.49 2.57
1755 2054 3.982516 ACTACTACAGGCCTCTGATTGA 58.017 45.455 0.00 0.00 43.49 2.57
1756 2055 4.744795 AACTACTACAGGCCTCTGATTG 57.255 45.455 0.00 0.00 43.49 2.67
1757 2056 4.777896 TGAAACTACTACAGGCCTCTGATT 59.222 41.667 0.00 0.00 43.49 2.57
1758 2057 4.353777 TGAAACTACTACAGGCCTCTGAT 58.646 43.478 0.00 0.00 43.49 2.90
1759 2058 3.764434 CTGAAACTACTACAGGCCTCTGA 59.236 47.826 0.00 0.00 43.49 3.27
1782 2081 2.427453 GGCAGTGACACTAGCTAGCTTA 59.573 50.000 24.88 8.09 0.00 3.09
1789 2088 0.318441 TGTCTGGCAGTGACACTAGC 59.682 55.000 15.27 13.63 39.23 3.42
1796 2095 1.302752 GCATGGTGTCTGGCAGTGA 60.303 57.895 15.27 0.00 0.00 3.41
1800 2099 0.911053 TCATAGCATGGTGTCTGGCA 59.089 50.000 7.89 0.00 0.00 4.92
1808 2107 7.782897 TTCTAGCTACTAATCATAGCATGGT 57.217 36.000 1.62 1.62 46.27 3.55
1851 2150 6.681541 ACCCCTGAAATAGTTTAAGGACCTAT 59.318 38.462 7.30 0.00 0.00 2.57
1895 2194 8.673711 CAAGGACCTAAATGACGATTTTCATAA 58.326 33.333 0.00 0.00 35.02 1.90
1920 2219 5.303333 TGGATGACACACTTACTGTACTTCA 59.697 40.000 0.00 0.00 0.00 3.02
2405 2712 7.967854 ACGATGAATTTGAGAAAAATATTCGCA 59.032 29.630 0.00 0.00 0.00 5.10
2639 2948 2.095461 CTGTCATCGAAGAGACCCTGA 58.905 52.381 11.82 0.00 43.63 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.