Multiple sequence alignment - TraesCS4A01G445300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G445300 chr4A 100.000 2384 0 0 1 2384 713353438 713351055 0.000000e+00 4403.0
1 TraesCS4A01G445300 chr7D 90.418 1482 104 19 603 2048 18913308 18911829 0.000000e+00 1916.0
2 TraesCS4A01G445300 chr7D 86.742 264 18 6 2123 2384 18911786 18911538 6.490000e-71 278.0
3 TraesCS4A01G445300 chr7D 85.308 211 18 6 1 209 18913873 18913674 3.110000e-49 206.0
4 TraesCS4A01G445300 chr7D 90.265 113 9 2 1262 1373 19962045 19962156 1.910000e-31 147.0
5 TraesCS4A01G445300 chr7D 95.455 66 2 1 2314 2378 18911681 18911616 1.170000e-18 104.0
6 TraesCS4A01G445300 chr7D 85.897 78 10 1 204 281 18913649 18913573 5.460000e-12 82.4
7 TraesCS4A01G445300 chr7A 92.865 967 56 6 847 1812 19319491 19318537 0.000000e+00 1391.0
8 TraesCS4A01G445300 chr7A 85.960 349 39 5 1685 2024 19298354 19298007 4.840000e-97 364.0
9 TraesCS4A01G445300 chr7A 85.714 210 14 4 1 209 19320230 19320036 8.640000e-50 207.0
10 TraesCS4A01G445300 chr7A 90.265 113 9 2 1262 1373 20097124 20097235 1.910000e-31 147.0
11 TraesCS4A01G445300 chrUn 90.265 113 9 2 1262 1373 294782771 294782660 1.910000e-31 147.0
12 TraesCS4A01G445300 chrUn 91.304 46 4 0 2132 2177 476850136 476850091 1.980000e-06 63.9
13 TraesCS4A01G445300 chr2B 89.565 115 10 2 1260 1373 784754106 784753993 6.870000e-31 145.0
14 TraesCS4A01G445300 chr2B 91.304 46 4 0 2132 2177 28433022 28432977 1.980000e-06 63.9
15 TraesCS4A01G445300 chr2B 91.304 46 4 0 2132 2177 28435314 28435269 1.980000e-06 63.9
16 TraesCS4A01G445300 chr2B 91.304 46 4 0 2132 2177 28437621 28437576 1.980000e-06 63.9
17 TraesCS4A01G445300 chr2B 91.304 46 4 0 2132 2177 28439914 28439869 1.980000e-06 63.9
18 TraesCS4A01G445300 chr2B 91.304 46 4 0 2132 2177 28442213 28442168 1.980000e-06 63.9
19 TraesCS4A01G445300 chr2B 91.304 46 4 0 2132 2177 28444518 28444473 1.980000e-06 63.9
20 TraesCS4A01G445300 chr2D 88.696 115 11 2 1260 1373 649061558 649061445 3.200000e-29 139.0
21 TraesCS4A01G445300 chr2A 87.826 115 12 2 1260 1373 775659128 775659241 1.490000e-27 134.0
22 TraesCS4A01G445300 chr7B 85.246 61 7 2 2123 2182 451365822 451365881 7.120000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G445300 chr4A 713351055 713353438 2383 True 4403.00 4403 100.0000 1 2384 1 chr4A.!!$R1 2383
1 TraesCS4A01G445300 chr7D 18911538 18913873 2335 True 517.28 1916 88.7640 1 2384 5 chr7D.!!$R1 2383
2 TraesCS4A01G445300 chr7A 19318537 19320230 1693 True 799.00 1391 89.2895 1 1812 2 chr7A.!!$R2 1811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 815 0.179129 CGGAGGGATTTTGTGCATGC 60.179 55.0 11.82 11.82 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2118 0.250234 CTGAACCTCCATCGAAGGCA 59.75 55.0 0.65 0.0 37.42 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 87 4.016706 CTCGGGTTTCTGGCCGGT 62.017 66.667 12.43 0.00 0.00 5.28
83 88 3.546714 CTCGGGTTTCTGGCCGGTT 62.547 63.158 12.43 0.00 0.00 4.44
84 89 2.596338 CGGGTTTCTGGCCGGTTT 60.596 61.111 12.43 0.00 0.00 3.27
85 90 2.622962 CGGGTTTCTGGCCGGTTTC 61.623 63.158 12.43 2.86 0.00 2.78
86 91 1.228459 GGGTTTCTGGCCGGTTTCT 60.228 57.895 12.43 0.00 0.00 2.52
87 92 1.524008 GGGTTTCTGGCCGGTTTCTG 61.524 60.000 12.43 0.00 0.00 3.02
88 93 1.524008 GGTTTCTGGCCGGTTTCTGG 61.524 60.000 12.43 0.00 0.00 3.86
187 194 0.940991 CGCCTTGGCTTTTGTGAAGC 60.941 55.000 10.12 2.27 42.30 3.86
196 204 2.500229 CTTTTGTGAAGCGGGTTAGGA 58.500 47.619 0.00 0.00 0.00 2.94
268 306 5.453903 CGGAGAGTTTCCTATTGATGGATGT 60.454 44.000 0.00 0.00 44.41 3.06
271 309 5.429762 AGAGTTTCCTATTGATGGATGTGGA 59.570 40.000 0.00 0.00 33.09 4.02
274 312 4.645863 TCCTATTGATGGATGTGGATGG 57.354 45.455 0.00 0.00 0.00 3.51
281 319 2.734755 TGGATGTGGATGGGATGTTC 57.265 50.000 0.00 0.00 0.00 3.18
282 320 1.921748 TGGATGTGGATGGGATGTTCA 59.078 47.619 0.00 0.00 0.00 3.18
283 321 2.311243 TGGATGTGGATGGGATGTTCAA 59.689 45.455 0.00 0.00 0.00 2.69
286 324 2.794103 TGTGGATGGGATGTTCAACTG 58.206 47.619 0.00 0.00 0.00 3.16
289 327 1.747355 GGATGGGATGTTCAACTGCTG 59.253 52.381 0.00 0.00 0.00 4.41
290 328 2.618816 GGATGGGATGTTCAACTGCTGA 60.619 50.000 0.00 0.00 0.00 4.26
305 403 4.753233 ACTGCTGACTATAAACTGCTCTG 58.247 43.478 0.00 0.00 33.38 3.35
309 407 4.808364 GCTGACTATAAACTGCTCTGAAGG 59.192 45.833 0.00 0.00 0.00 3.46
340 438 4.939052 TTTTATTTTCGGCAAAGGGTGA 57.061 36.364 0.00 0.00 0.00 4.02
341 439 4.513198 TTTATTTTCGGCAAAGGGTGAG 57.487 40.909 0.00 0.00 0.00 3.51
342 440 1.995376 ATTTTCGGCAAAGGGTGAGT 58.005 45.000 0.00 0.00 0.00 3.41
343 441 1.770294 TTTTCGGCAAAGGGTGAGTT 58.230 45.000 0.00 0.00 0.00 3.01
344 442 1.314730 TTTCGGCAAAGGGTGAGTTC 58.685 50.000 0.00 0.00 0.00 3.01
345 443 0.472471 TTCGGCAAAGGGTGAGTTCT 59.528 50.000 0.00 0.00 0.00 3.01
346 444 1.344065 TCGGCAAAGGGTGAGTTCTA 58.656 50.000 0.00 0.00 0.00 2.10
347 445 1.906574 TCGGCAAAGGGTGAGTTCTAT 59.093 47.619 0.00 0.00 0.00 1.98
348 446 2.304761 TCGGCAAAGGGTGAGTTCTATT 59.695 45.455 0.00 0.00 0.00 1.73
349 447 2.420022 CGGCAAAGGGTGAGTTCTATTG 59.580 50.000 0.00 0.00 0.00 1.90
350 448 2.755103 GGCAAAGGGTGAGTTCTATTGG 59.245 50.000 0.00 0.00 0.00 3.16
351 449 2.164422 GCAAAGGGTGAGTTCTATTGGC 59.836 50.000 0.00 0.00 0.00 4.52
352 450 3.690460 CAAAGGGTGAGTTCTATTGGCT 58.310 45.455 0.00 0.00 0.00 4.75
353 451 3.636153 AAGGGTGAGTTCTATTGGCTC 57.364 47.619 0.00 0.00 0.00 4.70
354 452 1.840635 AGGGTGAGTTCTATTGGCTCC 59.159 52.381 0.00 0.00 0.00 4.70
355 453 1.559682 GGGTGAGTTCTATTGGCTCCA 59.440 52.381 0.00 0.00 0.00 3.86
356 454 2.026262 GGGTGAGTTCTATTGGCTCCAA 60.026 50.000 3.55 3.55 40.47 3.53
357 455 3.561313 GGGTGAGTTCTATTGGCTCCAAA 60.561 47.826 5.34 0.00 39.55 3.28
358 456 4.273318 GGTGAGTTCTATTGGCTCCAAAT 58.727 43.478 5.34 0.00 39.55 2.32
359 457 4.096984 GGTGAGTTCTATTGGCTCCAAATG 59.903 45.833 5.34 2.20 39.55 2.32
360 458 4.943705 GTGAGTTCTATTGGCTCCAAATGA 59.056 41.667 5.34 4.45 39.55 2.57
361 459 5.415701 GTGAGTTCTATTGGCTCCAAATGAA 59.584 40.000 5.34 9.76 39.55 2.57
362 460 5.649395 TGAGTTCTATTGGCTCCAAATGAAG 59.351 40.000 15.10 7.95 39.55 3.02
363 461 4.400567 AGTTCTATTGGCTCCAAATGAAGC 59.599 41.667 15.10 11.70 39.55 3.86
364 462 4.240881 TCTATTGGCTCCAAATGAAGCT 57.759 40.909 5.34 0.00 39.55 3.74
365 463 4.202441 TCTATTGGCTCCAAATGAAGCTC 58.798 43.478 5.34 0.00 39.55 4.09
366 464 2.291209 TTGGCTCCAAATGAAGCTCA 57.709 45.000 0.00 0.00 32.44 4.26
367 465 1.830279 TGGCTCCAAATGAAGCTCAG 58.170 50.000 0.00 0.00 0.00 3.35
368 466 1.352017 TGGCTCCAAATGAAGCTCAGA 59.648 47.619 0.00 0.00 0.00 3.27
369 467 2.224843 TGGCTCCAAATGAAGCTCAGAA 60.225 45.455 0.00 0.00 0.00 3.02
370 468 2.163211 GGCTCCAAATGAAGCTCAGAAC 59.837 50.000 0.00 0.00 0.00 3.01
371 469 3.080319 GCTCCAAATGAAGCTCAGAACT 58.920 45.455 0.00 0.00 0.00 3.01
372 470 3.119919 GCTCCAAATGAAGCTCAGAACTG 60.120 47.826 0.00 0.00 0.00 3.16
373 471 2.816087 TCCAAATGAAGCTCAGAACTGC 59.184 45.455 0.00 0.00 0.00 4.40
374 472 2.555325 CCAAATGAAGCTCAGAACTGCA 59.445 45.455 0.00 0.00 0.00 4.41
375 473 3.192844 CCAAATGAAGCTCAGAACTGCAT 59.807 43.478 0.00 0.00 34.71 3.96
376 474 4.413087 CAAATGAAGCTCAGAACTGCATC 58.587 43.478 0.00 0.00 31.85 3.91
377 475 2.105006 TGAAGCTCAGAACTGCATCC 57.895 50.000 0.00 0.00 0.00 3.51
378 476 1.627329 TGAAGCTCAGAACTGCATCCT 59.373 47.619 0.00 0.00 0.00 3.24
386 484 2.028294 CAGAACTGCATCCTGTCTCTGT 60.028 50.000 0.00 0.00 31.55 3.41
388 486 0.612229 ACTGCATCCTGTCTCTGTGG 59.388 55.000 0.00 0.00 0.00 4.17
400 498 5.511373 CCTGTCTCTGTGGTACAAGAAATGA 60.511 44.000 0.00 0.00 44.16 2.57
401 499 6.114187 TGTCTCTGTGGTACAAGAAATGAT 57.886 37.500 0.00 0.00 44.16 2.45
403 501 6.998074 TGTCTCTGTGGTACAAGAAATGATTT 59.002 34.615 0.00 0.00 44.16 2.17
404 502 7.173218 TGTCTCTGTGGTACAAGAAATGATTTC 59.827 37.037 9.82 9.82 44.16 2.17
406 504 5.710099 TCTGTGGTACAAGAAATGATTTCCC 59.290 40.000 13.88 8.42 44.16 3.97
410 508 7.090808 GTGGTACAAGAAATGATTTCCCTTTC 58.909 38.462 13.88 3.53 44.16 2.62
414 512 4.708726 AGAAATGATTTCCCTTTCTGCG 57.291 40.909 13.88 0.00 40.54 5.18
419 517 3.745799 TGATTTCCCTTTCTGCGTGTTA 58.254 40.909 0.00 0.00 0.00 2.41
420 518 4.138290 TGATTTCCCTTTCTGCGTGTTAA 58.862 39.130 0.00 0.00 0.00 2.01
421 519 4.764823 TGATTTCCCTTTCTGCGTGTTAAT 59.235 37.500 0.00 0.00 0.00 1.40
422 520 5.242838 TGATTTCCCTTTCTGCGTGTTAATT 59.757 36.000 0.00 0.00 0.00 1.40
423 521 4.497473 TTCCCTTTCTGCGTGTTAATTG 57.503 40.909 0.00 0.00 0.00 2.32
424 522 3.482436 TCCCTTTCTGCGTGTTAATTGT 58.518 40.909 0.00 0.00 0.00 2.71
425 523 3.500680 TCCCTTTCTGCGTGTTAATTGTC 59.499 43.478 0.00 0.00 0.00 3.18
426 524 3.252215 CCCTTTCTGCGTGTTAATTGTCA 59.748 43.478 0.00 0.00 0.00 3.58
427 525 4.219033 CCTTTCTGCGTGTTAATTGTCAC 58.781 43.478 0.00 0.00 0.00 3.67
449 547 3.026694 ACAATGGGAAAATCTAGCAGGC 58.973 45.455 0.00 0.00 0.00 4.85
476 574 1.583404 GTGTTGCGAGTTTGTTTGCTG 59.417 47.619 0.00 0.00 0.00 4.41
477 575 0.572125 GTTGCGAGTTTGTTTGCTGC 59.428 50.000 0.00 0.00 0.00 5.25
478 576 0.455410 TTGCGAGTTTGTTTGCTGCT 59.545 45.000 0.00 0.00 0.00 4.24
479 577 0.455410 TGCGAGTTTGTTTGCTGCTT 59.545 45.000 0.00 0.00 0.00 3.91
480 578 1.123655 GCGAGTTTGTTTGCTGCTTC 58.876 50.000 0.00 0.00 0.00 3.86
481 579 1.533756 GCGAGTTTGTTTGCTGCTTCA 60.534 47.619 0.00 0.00 0.00 3.02
484 582 3.731867 CGAGTTTGTTTGCTGCTTCAGTT 60.732 43.478 0.00 0.00 33.43 3.16
493 591 2.553602 TGCTGCTTCAGTTTACCATGTG 59.446 45.455 0.00 0.00 33.43 3.21
496 594 4.499696 GCTGCTTCAGTTTACCATGTGTTT 60.500 41.667 0.00 0.00 33.43 2.83
500 598 5.590530 TTCAGTTTACCATGTGTTTTGCT 57.409 34.783 0.00 0.00 0.00 3.91
501 599 4.930963 TCAGTTTACCATGTGTTTTGCTG 58.069 39.130 0.00 0.00 0.00 4.41
519 617 2.362120 GTGCCTCAGCCCTGCAAT 60.362 61.111 0.00 0.00 38.69 3.56
520 618 1.980772 GTGCCTCAGCCCTGCAATT 60.981 57.895 0.00 0.00 38.69 2.32
555 654 9.326413 CCTAGTTTAGGTTAGGTATCACATTTG 57.674 37.037 0.00 0.00 41.18 2.32
556 655 7.625828 AGTTTAGGTTAGGTATCACATTTGC 57.374 36.000 0.00 0.00 0.00 3.68
557 656 7.402862 AGTTTAGGTTAGGTATCACATTTGCT 58.597 34.615 0.00 0.00 0.00 3.91
558 657 7.336931 AGTTTAGGTTAGGTATCACATTTGCTG 59.663 37.037 0.00 0.00 0.00 4.41
559 658 3.947834 AGGTTAGGTATCACATTTGCTGC 59.052 43.478 0.00 0.00 0.00 5.25
560 659 3.694072 GGTTAGGTATCACATTTGCTGCA 59.306 43.478 0.00 0.00 0.00 4.41
561 660 4.157656 GGTTAGGTATCACATTTGCTGCAA 59.842 41.667 11.69 11.69 0.00 4.08
562 661 3.855689 AGGTATCACATTTGCTGCAAC 57.144 42.857 15.72 1.10 0.00 4.17
563 662 3.424703 AGGTATCACATTTGCTGCAACT 58.575 40.909 15.72 7.04 0.00 3.16
564 663 3.441572 AGGTATCACATTTGCTGCAACTC 59.558 43.478 15.72 0.00 0.00 3.01
565 664 3.191162 GGTATCACATTTGCTGCAACTCA 59.809 43.478 15.72 0.43 0.00 3.41
566 665 2.780065 TCACATTTGCTGCAACTCAC 57.220 45.000 15.72 0.00 0.00 3.51
567 666 1.002576 TCACATTTGCTGCAACTCACG 60.003 47.619 15.72 4.52 0.00 4.35
568 667 1.024271 ACATTTGCTGCAACTCACGT 58.976 45.000 15.72 5.15 0.00 4.49
569 668 1.268692 ACATTTGCTGCAACTCACGTG 60.269 47.619 15.72 9.94 0.00 4.49
570 669 1.024271 ATTTGCTGCAACTCACGTGT 58.976 45.000 15.72 0.00 0.00 4.49
571 670 0.376852 TTTGCTGCAACTCACGTGTC 59.623 50.000 15.72 1.86 0.00 3.67
572 671 1.761244 TTGCTGCAACTCACGTGTCG 61.761 55.000 16.51 10.56 0.00 4.35
573 672 2.546321 CTGCAACTCACGTGTCGC 59.454 61.111 16.51 13.85 0.00 5.19
575 674 3.028019 GCAACTCACGTGTCGCGA 61.028 61.111 16.51 3.71 44.77 5.87
576 675 2.837280 CAACTCACGTGTCGCGAC 59.163 61.111 31.66 31.66 44.77 5.19
577 676 2.354305 AACTCACGTGTCGCGACC 60.354 61.111 34.34 23.92 44.77 4.79
578 677 3.128632 AACTCACGTGTCGCGACCA 62.129 57.895 34.34 20.35 44.77 4.02
589 688 0.457853 TCGCGACCAGTGTTATCAGC 60.458 55.000 3.71 0.00 0.00 4.26
591 690 1.002366 GCGACCAGTGTTATCAGCAG 58.998 55.000 0.00 0.00 0.00 4.24
592 691 1.002366 CGACCAGTGTTATCAGCAGC 58.998 55.000 0.00 0.00 0.00 5.25
593 692 1.404717 CGACCAGTGTTATCAGCAGCT 60.405 52.381 0.00 0.00 0.00 4.24
594 693 2.159240 CGACCAGTGTTATCAGCAGCTA 60.159 50.000 0.00 0.00 0.00 3.32
595 694 3.676049 CGACCAGTGTTATCAGCAGCTAA 60.676 47.826 0.00 0.00 0.00 3.09
596 695 3.600388 ACCAGTGTTATCAGCAGCTAAC 58.400 45.455 0.00 0.00 0.00 2.34
597 696 2.939103 CCAGTGTTATCAGCAGCTAACC 59.061 50.000 0.00 0.00 0.00 2.85
598 697 3.599343 CAGTGTTATCAGCAGCTAACCA 58.401 45.455 0.00 0.00 0.00 3.67
599 698 4.194640 CAGTGTTATCAGCAGCTAACCAT 58.805 43.478 0.00 0.00 0.00 3.55
601 700 5.994054 CAGTGTTATCAGCAGCTAACCATAT 59.006 40.000 0.00 0.00 0.00 1.78
620 719 8.050316 ACCATATTCATTAGGGTTTCAGAGAT 57.950 34.615 0.00 0.00 42.26 2.75
622 721 8.790718 CCATATTCATTAGGGTTTCAGAGATTG 58.209 37.037 0.00 0.00 0.00 2.67
625 724 6.627087 TCATTAGGGTTTCAGAGATTGAGT 57.373 37.500 0.00 0.00 37.07 3.41
632 731 7.290813 AGGGTTTCAGAGATTGAGTTAACTTT 58.709 34.615 10.02 0.00 37.07 2.66
636 735 7.969536 TTCAGAGATTGAGTTAACTTTCCAG 57.030 36.000 10.02 1.89 37.07 3.86
648 747 3.528217 TTTCCAGCTGGCTTGGGGG 62.528 63.158 28.91 1.31 34.44 5.40
660 759 1.877680 GCTTGGGGGTTGTTTGCATTC 60.878 52.381 0.00 0.00 0.00 2.67
675 774 1.792367 GCATTCGGGTTCAGTTTTTGC 59.208 47.619 0.00 0.00 0.00 3.68
676 775 2.403259 CATTCGGGTTCAGTTTTTGCC 58.597 47.619 0.00 0.00 0.00 4.52
712 815 0.179129 CGGAGGGATTTTGTGCATGC 60.179 55.000 11.82 11.82 0.00 4.06
720 823 3.005155 GGATTTTGTGCATGCTCCTATCC 59.995 47.826 20.33 20.02 0.00 2.59
760 863 8.217111 TGTATACTGAAATGAGCATGGGAAATA 58.783 33.333 4.17 0.00 0.00 1.40
802 909 8.581057 AAGAAGTATATTGACAGATAACAGCG 57.419 34.615 0.00 0.00 0.00 5.18
809 916 2.076863 GACAGATAACAGCGTTGCCTT 58.923 47.619 0.00 0.00 0.00 4.35
810 917 1.806542 ACAGATAACAGCGTTGCCTTG 59.193 47.619 0.00 0.00 0.00 3.61
817 924 3.726291 ACAGCGTTGCCTTGTTATTTT 57.274 38.095 0.00 0.00 0.00 1.82
818 925 4.053469 ACAGCGTTGCCTTGTTATTTTT 57.947 36.364 0.00 0.00 0.00 1.94
820 927 5.778862 ACAGCGTTGCCTTGTTATTTTTAT 58.221 33.333 0.00 0.00 0.00 1.40
822 929 4.625311 AGCGTTGCCTTGTTATTTTTATGC 59.375 37.500 0.00 0.00 0.00 3.14
842 949 9.430399 TTTATGCTACTACTAAGGTCTACCATT 57.570 33.333 1.26 0.00 38.89 3.16
843 950 7.916077 ATGCTACTACTAAGGTCTACCATTT 57.084 36.000 1.26 0.00 38.89 2.32
844 951 7.729124 TGCTACTACTAAGGTCTACCATTTT 57.271 36.000 1.26 0.00 38.89 1.82
856 984 4.636206 GTCTACCATTTTTGGCCTACTGAG 59.364 45.833 3.32 0.00 0.00 3.35
857 985 3.525800 ACCATTTTTGGCCTACTGAGT 57.474 42.857 3.32 0.00 0.00 3.41
862 990 2.113860 TTTGGCCTACTGAGTGATGC 57.886 50.000 3.32 0.00 0.00 3.91
864 992 0.250234 TGGCCTACTGAGTGATGCAC 59.750 55.000 3.32 0.00 34.10 4.57
880 1008 3.857157 TGCACTTGGTAGAACCTTCTT 57.143 42.857 0.00 0.00 39.58 2.52
886 1014 7.769044 TGCACTTGGTAGAACCTTCTTATTATC 59.231 37.037 0.00 0.00 39.58 1.75
887 1015 7.769044 GCACTTGGTAGAACCTTCTTATTATCA 59.231 37.037 0.00 0.00 39.58 2.15
911 1039 4.751098 GCAAATGTTTCATTCCAAGCTTGA 59.249 37.500 28.05 9.31 0.00 3.02
963 1091 4.345257 TCTGTACAAGTTTCCTGCTCTCTT 59.655 41.667 0.00 0.00 0.00 2.85
969 1097 2.883386 AGTTTCCTGCTCTCTTTTGCTG 59.117 45.455 0.00 0.00 0.00 4.41
999 1127 0.321671 TACTCAACTGTGCAGCTCCC 59.678 55.000 0.00 0.00 0.00 4.30
1068 1196 0.524816 CGTACGCCTGCGACTACATT 60.525 55.000 19.52 0.00 42.83 2.71
1108 1236 1.689813 TCGGTGGTATGTTGTGTGTCT 59.310 47.619 0.00 0.00 0.00 3.41
1111 1239 2.031157 GGTGGTATGTTGTGTGTCTTGC 60.031 50.000 0.00 0.00 0.00 4.01
1127 1255 4.402793 TGTCTTGCCTCTATAGTTCCTGTC 59.597 45.833 0.00 0.00 0.00 3.51
1135 1263 6.238953 GCCTCTATAGTTCCTGTCGTGAATTA 60.239 42.308 0.00 0.00 0.00 1.40
1158 1286 4.186926 ACAGCATAGTCAGCATTACACTG 58.813 43.478 0.00 0.00 36.44 3.66
1161 1289 5.812127 CAGCATAGTCAGCATTACACTGTTA 59.188 40.000 0.00 0.00 36.50 2.41
1165 1293 7.633621 CATAGTCAGCATTACACTGTTATTGG 58.366 38.462 0.00 0.00 36.50 3.16
1167 1295 6.003950 AGTCAGCATTACACTGTTATTGGTT 58.996 36.000 0.00 0.00 36.50 3.67
1206 1336 8.172484 GTCAAAAACCATTTCCTTTGTGTTAAC 58.828 33.333 0.00 0.00 32.00 2.01
1209 1339 8.936070 AAAACCATTTCCTTTGTGTTAACTAC 57.064 30.769 7.22 4.40 0.00 2.73
1445 1575 1.375523 CTGCCCGCTAAACCTCGTT 60.376 57.895 0.00 0.00 0.00 3.85
1486 1616 4.141846 GGCACTGATTCTAGATCTTCCACA 60.142 45.833 0.00 0.00 0.00 4.17
1490 1620 5.163602 ACTGATTCTAGATCTTCCACACGTC 60.164 44.000 0.00 0.00 0.00 4.34
1837 1967 4.621991 TCTCGAGAGGTTTCTTTTGAGTG 58.378 43.478 12.08 0.00 32.53 3.51
1912 2043 0.602562 TTGCCAGAGGAAAAATGCCG 59.397 50.000 0.00 0.00 0.00 5.69
1915 2046 0.611896 CCAGAGGAAAAATGCCGGGT 60.612 55.000 2.18 0.00 0.00 5.28
1924 2055 4.421058 GAAAAATGCCGGGTAGATTGAAC 58.579 43.478 2.18 0.00 0.00 3.18
1937 2068 4.899352 AGATTGAACTGCTAACTCTGGT 57.101 40.909 0.00 0.00 0.00 4.00
2007 2140 0.537188 GCCTTCGATGGAGGTTCAGA 59.463 55.000 20.87 0.00 0.00 3.27
2060 2233 4.170251 ACATAGTACAGACATCCTACCCCT 59.830 45.833 0.00 0.00 0.00 4.79
2079 2252 1.554160 CTGTGAGCACCTTGGAGAGAT 59.446 52.381 0.00 0.00 0.00 2.75
2090 2263 3.618351 CTTGGAGAGATTGAGTTGGCAT 58.382 45.455 0.00 0.00 0.00 4.40
2091 2264 2.995283 TGGAGAGATTGAGTTGGCATG 58.005 47.619 0.00 0.00 0.00 4.06
2092 2265 2.306805 TGGAGAGATTGAGTTGGCATGT 59.693 45.455 0.00 0.00 0.00 3.21
2093 2266 2.941720 GGAGAGATTGAGTTGGCATGTC 59.058 50.000 0.00 0.00 0.00 3.06
2094 2267 3.603532 GAGAGATTGAGTTGGCATGTCA 58.396 45.455 0.00 0.00 0.00 3.58
2095 2268 4.197750 GAGAGATTGAGTTGGCATGTCAT 58.802 43.478 0.00 0.00 0.00 3.06
2096 2269 4.197750 AGAGATTGAGTTGGCATGTCATC 58.802 43.478 0.00 0.00 0.00 2.92
2097 2270 4.080469 AGAGATTGAGTTGGCATGTCATCT 60.080 41.667 10.63 10.63 0.00 2.90
2098 2271 4.597004 AGATTGAGTTGGCATGTCATCTT 58.403 39.130 12.01 0.00 0.00 2.40
2099 2272 4.398358 AGATTGAGTTGGCATGTCATCTTG 59.602 41.667 12.01 0.00 0.00 3.02
2100 2273 3.144657 TGAGTTGGCATGTCATCTTGT 57.855 42.857 12.01 0.00 0.00 3.16
2101 2274 2.815503 TGAGTTGGCATGTCATCTTGTG 59.184 45.455 12.01 0.00 0.00 3.33
2102 2275 3.076621 GAGTTGGCATGTCATCTTGTGA 58.923 45.455 12.01 0.00 0.00 3.58
2103 2276 3.693085 GAGTTGGCATGTCATCTTGTGAT 59.307 43.478 12.01 0.00 39.48 3.06
2104 2277 4.084287 AGTTGGCATGTCATCTTGTGATT 58.916 39.130 0.00 0.00 39.48 2.57
2105 2278 4.525487 AGTTGGCATGTCATCTTGTGATTT 59.475 37.500 0.00 0.00 39.48 2.17
2106 2279 5.011329 AGTTGGCATGTCATCTTGTGATTTT 59.989 36.000 0.00 0.00 39.48 1.82
2107 2280 5.471556 TGGCATGTCATCTTGTGATTTTT 57.528 34.783 0.00 0.00 39.48 1.94
2108 2281 5.472148 TGGCATGTCATCTTGTGATTTTTC 58.528 37.500 0.00 0.00 39.48 2.29
2109 2282 4.560035 GGCATGTCATCTTGTGATTTTTCG 59.440 41.667 0.00 0.00 39.48 3.46
2110 2283 5.156355 GCATGTCATCTTGTGATTTTTCGT 58.844 37.500 0.00 0.00 39.48 3.85
2111 2284 6.314018 GCATGTCATCTTGTGATTTTTCGTA 58.686 36.000 0.00 0.00 39.48 3.43
2112 2285 6.467047 GCATGTCATCTTGTGATTTTTCGTAG 59.533 38.462 0.00 0.00 39.48 3.51
2113 2286 7.521529 CATGTCATCTTGTGATTTTTCGTAGT 58.478 34.615 0.00 0.00 39.48 2.73
2114 2287 7.490962 TGTCATCTTGTGATTTTTCGTAGTT 57.509 32.000 0.00 0.00 39.48 2.24
2115 2288 7.351981 TGTCATCTTGTGATTTTTCGTAGTTG 58.648 34.615 0.00 0.00 39.48 3.16
2116 2289 7.011950 TGTCATCTTGTGATTTTTCGTAGTTGT 59.988 33.333 0.00 0.00 39.48 3.32
2117 2290 8.492748 GTCATCTTGTGATTTTTCGTAGTTGTA 58.507 33.333 0.00 0.00 39.48 2.41
2118 2291 8.708742 TCATCTTGTGATTTTTCGTAGTTGTAG 58.291 33.333 0.00 0.00 0.00 2.74
2119 2292 8.495949 CATCTTGTGATTTTTCGTAGTTGTAGT 58.504 33.333 0.00 0.00 0.00 2.73
2120 2293 8.068893 TCTTGTGATTTTTCGTAGTTGTAGTC 57.931 34.615 0.00 0.00 0.00 2.59
2121 2294 6.442487 TGTGATTTTTCGTAGTTGTAGTCG 57.558 37.500 0.00 0.00 0.00 4.18
2122 2295 6.207928 TGTGATTTTTCGTAGTTGTAGTCGA 58.792 36.000 0.00 0.00 0.00 4.20
2123 2296 6.864685 TGTGATTTTTCGTAGTTGTAGTCGAT 59.135 34.615 0.00 0.00 32.54 3.59
2124 2297 7.061441 TGTGATTTTTCGTAGTTGTAGTCGATC 59.939 37.037 0.00 0.00 32.54 3.69
2125 2298 6.529125 TGATTTTTCGTAGTTGTAGTCGATCC 59.471 38.462 0.00 0.00 32.54 3.36
2126 2299 5.633830 TTTTCGTAGTTGTAGTCGATCCT 57.366 39.130 0.00 0.00 32.54 3.24
2127 2300 6.741992 TTTTCGTAGTTGTAGTCGATCCTA 57.258 37.500 0.00 0.00 32.54 2.94
2128 2301 5.725110 TTCGTAGTTGTAGTCGATCCTAC 57.275 43.478 6.31 6.31 38.23 3.18
2129 2302 4.122776 TCGTAGTTGTAGTCGATCCTACC 58.877 47.826 9.89 0.00 37.16 3.18
2130 2303 3.249559 CGTAGTTGTAGTCGATCCTACCC 59.750 52.174 9.89 2.62 37.16 3.69
2131 2304 2.664015 AGTTGTAGTCGATCCTACCCC 58.336 52.381 9.89 2.34 37.16 4.95
2132 2305 2.244252 AGTTGTAGTCGATCCTACCCCT 59.756 50.000 9.89 4.18 37.16 4.79
2133 2306 3.461085 AGTTGTAGTCGATCCTACCCCTA 59.539 47.826 9.89 0.00 37.16 3.53
2134 2307 4.106019 AGTTGTAGTCGATCCTACCCCTAT 59.894 45.833 9.89 0.00 37.16 2.57
2135 2308 4.030314 TGTAGTCGATCCTACCCCTATG 57.970 50.000 9.89 0.00 37.16 2.23
2136 2309 3.654321 TGTAGTCGATCCTACCCCTATGA 59.346 47.826 9.89 0.00 37.16 2.15
2137 2310 3.443145 AGTCGATCCTACCCCTATGAG 57.557 52.381 0.00 0.00 0.00 2.90
2138 2311 1.819903 GTCGATCCTACCCCTATGAGC 59.180 57.143 0.00 0.00 0.00 4.26
2139 2312 1.427753 TCGATCCTACCCCTATGAGCA 59.572 52.381 0.00 0.00 0.00 4.26
2140 2313 2.043115 TCGATCCTACCCCTATGAGCAT 59.957 50.000 0.00 0.00 0.00 3.79
2141 2314 2.428890 CGATCCTACCCCTATGAGCATC 59.571 54.545 0.00 0.00 0.00 3.91
2142 2315 3.718723 GATCCTACCCCTATGAGCATCT 58.281 50.000 0.00 0.00 34.92 2.90
2143 2316 3.637821 TCCTACCCCTATGAGCATCTT 57.362 47.619 0.00 0.00 34.92 2.40
2144 2317 3.511477 TCCTACCCCTATGAGCATCTTC 58.489 50.000 0.00 0.00 34.92 2.87
2145 2318 2.232452 CCTACCCCTATGAGCATCTTCG 59.768 54.545 0.00 0.00 34.92 3.79
2146 2319 2.088104 ACCCCTATGAGCATCTTCGA 57.912 50.000 0.00 0.00 34.92 3.71
2147 2320 1.967066 ACCCCTATGAGCATCTTCGAG 59.033 52.381 0.00 0.00 34.92 4.04
2148 2321 2.242926 CCCCTATGAGCATCTTCGAGA 58.757 52.381 0.00 0.00 34.92 4.04
2149 2322 2.830923 CCCCTATGAGCATCTTCGAGAT 59.169 50.000 0.00 0.00 34.74 2.75
2150 2323 4.019858 CCCCTATGAGCATCTTCGAGATA 58.980 47.826 0.00 0.00 32.12 1.98
2151 2324 4.142271 CCCCTATGAGCATCTTCGAGATAC 60.142 50.000 0.00 0.00 32.12 2.24
2152 2325 4.704540 CCCTATGAGCATCTTCGAGATACT 59.295 45.833 0.00 0.00 32.12 2.12
2153 2326 5.392919 CCCTATGAGCATCTTCGAGATACTG 60.393 48.000 3.30 0.00 32.12 2.74
2154 2327 5.414144 CCTATGAGCATCTTCGAGATACTGA 59.586 44.000 3.30 0.00 32.12 3.41
2155 2328 4.827304 TGAGCATCTTCGAGATACTGAG 57.173 45.455 3.30 0.00 32.12 3.35
2156 2329 3.004210 TGAGCATCTTCGAGATACTGAGC 59.996 47.826 3.30 0.00 32.12 4.26
2157 2330 3.221771 AGCATCTTCGAGATACTGAGCT 58.778 45.455 0.00 0.00 32.12 4.09
2158 2331 3.004629 AGCATCTTCGAGATACTGAGCTG 59.995 47.826 0.00 0.00 32.12 4.24
2159 2332 3.004210 GCATCTTCGAGATACTGAGCTGA 59.996 47.826 0.00 0.00 32.12 4.26
2160 2333 4.536065 CATCTTCGAGATACTGAGCTGAC 58.464 47.826 0.00 0.00 32.12 3.51
2161 2334 3.610911 TCTTCGAGATACTGAGCTGACA 58.389 45.455 0.00 0.00 0.00 3.58
2162 2335 4.203226 TCTTCGAGATACTGAGCTGACAT 58.797 43.478 0.00 0.00 0.00 3.06
2163 2336 4.642437 TCTTCGAGATACTGAGCTGACATT 59.358 41.667 0.00 0.00 0.00 2.71
2216 2389 5.263968 ACAGGAACGTCTATTATCACAGG 57.736 43.478 0.00 0.00 0.00 4.00
2225 2398 5.398711 CGTCTATTATCACAGGTTAGTTCGC 59.601 44.000 0.00 0.00 0.00 4.70
2233 2406 0.034337 AGGTTAGTTCGCGGCTTGAA 59.966 50.000 6.13 0.00 0.00 2.69
2237 2410 3.161306 GTTAGTTCGCGGCTTGAATTTC 58.839 45.455 6.13 0.00 0.00 2.17
2240 2413 2.293399 AGTTCGCGGCTTGAATTTCTTT 59.707 40.909 6.13 0.00 0.00 2.52
2273 2446 2.105006 ATTGATGCGAGTTGTCAGCT 57.895 45.000 0.00 0.00 0.00 4.24
2274 2447 1.882912 TTGATGCGAGTTGTCAGCTT 58.117 45.000 0.00 0.00 0.00 3.74
2275 2448 1.150827 TGATGCGAGTTGTCAGCTTG 58.849 50.000 0.00 0.00 0.00 4.01
2289 2462 2.840974 GCTTGACAGCGGTACATGT 58.159 52.632 2.69 2.69 35.91 3.21
2290 2463 2.004583 GCTTGACAGCGGTACATGTA 57.995 50.000 0.08 0.08 35.91 2.29
2291 2464 2.343101 GCTTGACAGCGGTACATGTAA 58.657 47.619 7.25 0.00 35.91 2.41
2292 2465 2.739913 GCTTGACAGCGGTACATGTAAA 59.260 45.455 7.25 0.00 35.91 2.01
2293 2466 3.187637 GCTTGACAGCGGTACATGTAAAA 59.812 43.478 7.25 0.00 35.91 1.52
2294 2467 4.669197 GCTTGACAGCGGTACATGTAAAAG 60.669 45.833 7.25 3.27 35.91 2.27
2300 2473 5.764192 ACAGCGGTACATGTAAAAGGTAAAA 59.236 36.000 7.25 0.00 0.00 1.52
2317 2490 7.246171 AGGTAAAAGATCTGTTCTCTGCTTA 57.754 36.000 0.00 0.00 31.78 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 84 0.878523 TGTTGACGAGCCAGAAACCG 60.879 55.000 0.00 0.00 0.00 4.44
80 85 0.868406 CTGTTGACGAGCCAGAAACC 59.132 55.000 0.00 0.00 0.00 3.27
82 87 0.179059 TGCTGTTGACGAGCCAGAAA 60.179 50.000 0.00 0.00 35.43 2.52
83 88 0.601046 CTGCTGTTGACGAGCCAGAA 60.601 55.000 0.00 0.00 35.43 3.02
84 89 1.005748 CTGCTGTTGACGAGCCAGA 60.006 57.895 0.00 0.00 35.43 3.86
85 90 0.390866 ATCTGCTGTTGACGAGCCAG 60.391 55.000 0.00 0.00 35.43 4.85
86 91 0.390340 GATCTGCTGTTGACGAGCCA 60.390 55.000 0.00 0.00 35.43 4.75
87 92 1.086634 GGATCTGCTGTTGACGAGCC 61.087 60.000 0.00 0.00 35.43 4.70
88 93 0.390340 TGGATCTGCTGTTGACGAGC 60.390 55.000 0.00 0.00 36.95 5.03
89 94 1.203287 TCTGGATCTGCTGTTGACGAG 59.797 52.381 0.00 0.00 0.00 4.18
90 95 1.203287 CTCTGGATCTGCTGTTGACGA 59.797 52.381 0.00 0.00 0.00 4.20
91 96 1.067283 ACTCTGGATCTGCTGTTGACG 60.067 52.381 0.00 0.00 0.00 4.35
92 97 2.758736 ACTCTGGATCTGCTGTTGAC 57.241 50.000 0.00 0.00 0.00 3.18
93 98 2.762887 CCTACTCTGGATCTGCTGTTGA 59.237 50.000 0.00 0.00 0.00 3.18
139 144 1.350071 CTCATCTCTCCCCATCCTGG 58.650 60.000 0.00 0.00 37.25 4.45
140 145 0.686224 GCTCATCTCTCCCCATCCTG 59.314 60.000 0.00 0.00 0.00 3.86
141 146 0.473501 GGCTCATCTCTCCCCATCCT 60.474 60.000 0.00 0.00 0.00 3.24
175 182 1.068541 CCTAACCCGCTTCACAAAAGC 60.069 52.381 0.00 0.00 39.77 3.51
187 194 0.393808 CAACCCACCATCCTAACCCG 60.394 60.000 0.00 0.00 0.00 5.28
196 204 0.706433 AAGATCCAGCAACCCACCAT 59.294 50.000 0.00 0.00 0.00 3.55
245 283 5.762218 CACATCCATCAATAGGAAACTCTCC 59.238 44.000 0.00 0.00 45.81 3.71
247 285 5.429762 TCCACATCCATCAATAGGAAACTCT 59.570 40.000 0.00 0.00 43.67 3.24
248 286 5.684704 TCCACATCCATCAATAGGAAACTC 58.315 41.667 0.00 0.00 43.67 3.01
256 294 4.354686 ACATCCCATCCACATCCATCAATA 59.645 41.667 0.00 0.00 0.00 1.90
268 306 1.355381 AGCAGTTGAACATCCCATCCA 59.645 47.619 0.00 0.00 0.00 3.41
271 309 2.040813 AGTCAGCAGTTGAACATCCCAT 59.959 45.455 0.00 0.00 37.61 4.00
274 312 6.595716 AGTTTATAGTCAGCAGTTGAACATCC 59.404 38.462 0.00 0.00 37.61 3.51
281 319 5.063186 CAGAGCAGTTTATAGTCAGCAGTTG 59.937 44.000 0.00 0.00 0.00 3.16
282 320 5.047021 TCAGAGCAGTTTATAGTCAGCAGTT 60.047 40.000 0.00 0.00 0.00 3.16
283 321 4.464244 TCAGAGCAGTTTATAGTCAGCAGT 59.536 41.667 0.00 0.00 0.00 4.40
286 324 4.808364 CCTTCAGAGCAGTTTATAGTCAGC 59.192 45.833 0.00 0.00 0.00 4.26
289 327 5.599999 TCCCTTCAGAGCAGTTTATAGTC 57.400 43.478 0.00 0.00 0.00 2.59
290 328 6.408662 GGATTCCCTTCAGAGCAGTTTATAGT 60.409 42.308 0.00 0.00 0.00 2.12
318 416 5.163395 ACTCACCCTTTGCCGAAAATAAAAA 60.163 36.000 0.00 0.00 0.00 1.94
319 417 4.342665 ACTCACCCTTTGCCGAAAATAAAA 59.657 37.500 0.00 0.00 0.00 1.52
320 418 3.892588 ACTCACCCTTTGCCGAAAATAAA 59.107 39.130 0.00 0.00 0.00 1.40
321 419 3.492337 ACTCACCCTTTGCCGAAAATAA 58.508 40.909 0.00 0.00 0.00 1.40
322 420 3.149005 ACTCACCCTTTGCCGAAAATA 57.851 42.857 0.00 0.00 0.00 1.40
323 421 1.995376 ACTCACCCTTTGCCGAAAAT 58.005 45.000 0.00 0.00 0.00 1.82
324 422 1.679153 GAACTCACCCTTTGCCGAAAA 59.321 47.619 0.00 0.00 0.00 2.29
325 423 1.133915 AGAACTCACCCTTTGCCGAAA 60.134 47.619 0.00 0.00 0.00 3.46
326 424 0.472471 AGAACTCACCCTTTGCCGAA 59.528 50.000 0.00 0.00 0.00 4.30
327 425 1.344065 TAGAACTCACCCTTTGCCGA 58.656 50.000 0.00 0.00 0.00 5.54
328 426 2.403252 ATAGAACTCACCCTTTGCCG 57.597 50.000 0.00 0.00 0.00 5.69
329 427 2.755103 CCAATAGAACTCACCCTTTGCC 59.245 50.000 0.00 0.00 0.00 4.52
330 428 2.164422 GCCAATAGAACTCACCCTTTGC 59.836 50.000 0.00 0.00 0.00 3.68
331 429 3.690460 AGCCAATAGAACTCACCCTTTG 58.310 45.455 0.00 0.00 0.00 2.77
332 430 3.308473 GGAGCCAATAGAACTCACCCTTT 60.308 47.826 0.00 0.00 31.88 3.11
333 431 2.239907 GGAGCCAATAGAACTCACCCTT 59.760 50.000 0.00 0.00 31.88 3.95
334 432 1.840635 GGAGCCAATAGAACTCACCCT 59.159 52.381 0.00 0.00 31.88 4.34
335 433 1.559682 TGGAGCCAATAGAACTCACCC 59.440 52.381 0.00 0.00 31.88 4.61
336 434 3.350219 TTGGAGCCAATAGAACTCACC 57.650 47.619 0.00 0.00 31.88 4.02
337 435 4.943705 TCATTTGGAGCCAATAGAACTCAC 59.056 41.667 2.29 0.00 35.70 3.51
338 436 5.178096 TCATTTGGAGCCAATAGAACTCA 57.822 39.130 2.29 0.00 35.70 3.41
339 437 5.449725 GCTTCATTTGGAGCCAATAGAACTC 60.450 44.000 2.29 1.10 35.70 3.01
340 438 4.400567 GCTTCATTTGGAGCCAATAGAACT 59.599 41.667 2.29 0.00 35.70 3.01
341 439 4.400567 AGCTTCATTTGGAGCCAATAGAAC 59.599 41.667 7.23 5.98 35.70 3.01
342 440 4.603131 AGCTTCATTTGGAGCCAATAGAA 58.397 39.130 7.23 9.16 35.70 2.10
343 441 4.202441 GAGCTTCATTTGGAGCCAATAGA 58.798 43.478 7.23 1.80 35.70 1.98
344 442 3.949754 TGAGCTTCATTTGGAGCCAATAG 59.050 43.478 7.23 0.00 35.70 1.73
345 443 3.949754 CTGAGCTTCATTTGGAGCCAATA 59.050 43.478 7.23 0.00 35.70 1.90
346 444 2.758979 CTGAGCTTCATTTGGAGCCAAT 59.241 45.455 7.23 0.00 35.70 3.16
347 445 2.165167 CTGAGCTTCATTTGGAGCCAA 58.835 47.619 7.23 0.00 0.00 4.52
348 446 1.352017 TCTGAGCTTCATTTGGAGCCA 59.648 47.619 7.23 4.85 0.00 4.75
349 447 2.119801 TCTGAGCTTCATTTGGAGCC 57.880 50.000 7.23 0.50 0.00 4.70
350 448 3.080319 AGTTCTGAGCTTCATTTGGAGC 58.920 45.455 2.42 2.42 0.00 4.70
351 449 3.119919 GCAGTTCTGAGCTTCATTTGGAG 60.120 47.826 3.84 0.00 0.00 3.86
352 450 2.816087 GCAGTTCTGAGCTTCATTTGGA 59.184 45.455 3.84 0.00 0.00 3.53
353 451 2.555325 TGCAGTTCTGAGCTTCATTTGG 59.445 45.455 3.84 0.00 0.00 3.28
354 452 3.909776 TGCAGTTCTGAGCTTCATTTG 57.090 42.857 3.84 0.00 0.00 2.32
355 453 3.442977 GGATGCAGTTCTGAGCTTCATTT 59.557 43.478 7.91 0.00 36.84 2.32
356 454 3.015327 GGATGCAGTTCTGAGCTTCATT 58.985 45.455 7.91 0.00 36.84 2.57
357 455 2.239150 AGGATGCAGTTCTGAGCTTCAT 59.761 45.455 6.38 6.38 36.84 2.57
358 456 1.627329 AGGATGCAGTTCTGAGCTTCA 59.373 47.619 3.84 0.00 36.84 3.02
359 457 2.008329 CAGGATGCAGTTCTGAGCTTC 58.992 52.381 3.84 0.00 35.06 3.86
360 458 1.350351 ACAGGATGCAGTTCTGAGCTT 59.650 47.619 17.08 0.00 42.53 3.74
361 459 0.982704 ACAGGATGCAGTTCTGAGCT 59.017 50.000 17.08 0.00 42.53 4.09
362 460 1.066286 AGACAGGATGCAGTTCTGAGC 60.066 52.381 17.08 10.21 42.53 4.26
363 461 2.496871 AGAGACAGGATGCAGTTCTGAG 59.503 50.000 17.08 0.00 42.53 3.35
364 462 2.233186 CAGAGACAGGATGCAGTTCTGA 59.767 50.000 17.08 0.00 42.53 3.27
365 463 2.028294 ACAGAGACAGGATGCAGTTCTG 60.028 50.000 14.86 14.86 42.53 3.02
366 464 2.028294 CACAGAGACAGGATGCAGTTCT 60.028 50.000 0.00 0.00 42.53 3.01
367 465 2.344950 CACAGAGACAGGATGCAGTTC 58.655 52.381 0.00 0.00 42.53 3.01
368 466 1.002888 CCACAGAGACAGGATGCAGTT 59.997 52.381 0.00 0.00 42.53 3.16
369 467 0.612229 CCACAGAGACAGGATGCAGT 59.388 55.000 0.00 0.00 42.53 4.40
370 468 0.612229 ACCACAGAGACAGGATGCAG 59.388 55.000 0.00 0.00 42.53 4.41
371 469 1.550524 GTACCACAGAGACAGGATGCA 59.449 52.381 0.00 0.00 42.53 3.96
372 470 1.550524 TGTACCACAGAGACAGGATGC 59.449 52.381 0.00 0.00 42.53 3.91
373 471 3.511540 TCTTGTACCACAGAGACAGGATG 59.488 47.826 0.00 0.00 46.00 3.51
374 472 3.779444 TCTTGTACCACAGAGACAGGAT 58.221 45.455 0.00 0.00 0.00 3.24
375 473 3.238788 TCTTGTACCACAGAGACAGGA 57.761 47.619 0.00 0.00 0.00 3.86
376 474 4.336889 TTTCTTGTACCACAGAGACAGG 57.663 45.455 0.00 0.00 0.00 4.00
377 475 5.541845 TCATTTCTTGTACCACAGAGACAG 58.458 41.667 0.00 0.00 0.00 3.51
378 476 5.545063 TCATTTCTTGTACCACAGAGACA 57.455 39.130 0.00 0.00 0.00 3.41
386 484 7.010160 AGAAAGGGAAATCATTTCTTGTACCA 58.990 34.615 10.01 0.00 39.61 3.25
388 486 6.808704 GCAGAAAGGGAAATCATTTCTTGTAC 59.191 38.462 10.01 0.73 40.40 2.90
400 498 5.010617 ACAATTAACACGCAGAAAGGGAAAT 59.989 36.000 0.00 0.00 0.00 2.17
401 499 4.339814 ACAATTAACACGCAGAAAGGGAAA 59.660 37.500 0.00 0.00 0.00 3.13
403 501 3.482436 ACAATTAACACGCAGAAAGGGA 58.518 40.909 0.00 0.00 0.00 4.20
404 502 3.252215 TGACAATTAACACGCAGAAAGGG 59.748 43.478 0.00 0.00 0.00 3.95
406 504 4.670621 GTGTGACAATTAACACGCAGAAAG 59.329 41.667 17.11 0.00 43.90 2.62
410 508 4.379498 CATTGTGTGACAATTAACACGCAG 59.621 41.667 21.00 12.65 45.80 5.18
414 512 5.446143 TCCCATTGTGTGACAATTAACAC 57.554 39.130 9.98 9.98 45.80 3.32
419 517 6.423776 AGATTTTCCCATTGTGTGACAATT 57.576 33.333 0.00 0.00 45.80 2.32
421 519 5.048083 GCTAGATTTTCCCATTGTGTGACAA 60.048 40.000 0.00 0.00 42.95 3.18
422 520 4.458989 GCTAGATTTTCCCATTGTGTGACA 59.541 41.667 0.00 0.00 0.00 3.58
423 521 4.458989 TGCTAGATTTTCCCATTGTGTGAC 59.541 41.667 0.00 0.00 0.00 3.67
424 522 4.661222 TGCTAGATTTTCCCATTGTGTGA 58.339 39.130 0.00 0.00 0.00 3.58
425 523 4.142315 CCTGCTAGATTTTCCCATTGTGTG 60.142 45.833 0.00 0.00 0.00 3.82
426 524 4.019174 CCTGCTAGATTTTCCCATTGTGT 58.981 43.478 0.00 0.00 0.00 3.72
427 525 3.181483 GCCTGCTAGATTTTCCCATTGTG 60.181 47.826 0.00 0.00 0.00 3.33
449 547 2.224079 ACAAACTCGCAACACATAGCTG 59.776 45.455 0.00 0.00 0.00 4.24
453 551 3.066064 AGCAAACAAACTCGCAACACATA 59.934 39.130 0.00 0.00 0.00 2.29
463 561 3.427161 ACTGAAGCAGCAAACAAACTC 57.573 42.857 0.00 0.00 34.37 3.01
476 574 4.209080 GCAAAACACATGGTAAACTGAAGC 59.791 41.667 0.00 0.00 0.00 3.86
477 575 5.459762 CAGCAAAACACATGGTAAACTGAAG 59.540 40.000 0.00 0.00 0.00 3.02
478 576 5.347342 CAGCAAAACACATGGTAAACTGAA 58.653 37.500 0.00 0.00 0.00 3.02
479 577 4.202101 CCAGCAAAACACATGGTAAACTGA 60.202 41.667 0.00 0.00 0.00 3.41
480 578 4.050553 CCAGCAAAACACATGGTAAACTG 58.949 43.478 0.00 0.00 0.00 3.16
481 579 3.704061 ACCAGCAAAACACATGGTAAACT 59.296 39.130 0.00 0.00 44.15 2.66
484 582 2.223923 GCACCAGCAAAACACATGGTAA 60.224 45.455 0.00 0.00 44.16 2.85
501 599 3.951769 ATTGCAGGGCTGAGGCACC 62.952 63.158 8.68 0.00 44.23 5.01
511 609 1.829222 AGGCTCATTCAAATTGCAGGG 59.171 47.619 0.00 0.00 0.00 4.45
546 645 2.351060 CGTGAGTTGCAGCAAATGTGAT 60.351 45.455 13.91 0.00 0.00 3.06
547 646 1.002576 CGTGAGTTGCAGCAAATGTGA 60.003 47.619 13.91 0.00 0.00 3.58
550 649 1.268692 ACACGTGAGTTGCAGCAAATG 60.269 47.619 25.01 4.35 46.40 2.32
551 650 1.002468 GACACGTGAGTTGCAGCAAAT 60.002 47.619 25.01 9.07 46.40 2.32
553 652 1.761244 CGACACGTGAGTTGCAGCAA 61.761 55.000 25.01 2.83 46.40 3.91
555 654 2.546321 CGACACGTGAGTTGCAGC 59.454 61.111 25.01 0.00 46.40 5.25
556 655 2.546321 GCGACACGTGAGTTGCAG 59.454 61.111 25.01 5.97 46.40 4.41
557 656 3.326981 CGCGACACGTGAGTTGCA 61.327 61.111 25.01 0.00 46.94 4.08
558 657 3.028019 TCGCGACACGTGAGTTGC 61.028 61.111 25.01 15.24 46.40 4.17
559 658 2.645510 GGTCGCGACACGTGAGTTG 61.646 63.158 37.26 5.73 46.84 3.16
560 659 2.354305 GGTCGCGACACGTGAGTT 60.354 61.111 37.26 0.00 46.84 3.01
561 660 3.538028 CTGGTCGCGACACGTGAGT 62.538 63.158 37.26 0.00 46.84 3.41
562 661 2.801162 CTGGTCGCGACACGTGAG 60.801 66.667 37.26 20.81 46.84 3.51
563 662 3.588906 ACTGGTCGCGACACGTGA 61.589 61.111 37.26 16.06 44.12 4.35
564 663 3.394874 CACTGGTCGCGACACGTG 61.395 66.667 37.26 33.88 44.19 4.49
565 664 2.062361 TAACACTGGTCGCGACACGT 62.062 55.000 37.26 29.03 44.19 4.49
566 665 0.731514 ATAACACTGGTCGCGACACG 60.732 55.000 37.26 28.41 45.62 4.49
567 666 0.989890 GATAACACTGGTCGCGACAC 59.010 55.000 37.26 26.67 0.00 3.67
568 667 0.599060 TGATAACACTGGTCGCGACA 59.401 50.000 37.26 23.04 0.00 4.35
569 668 1.269166 CTGATAACACTGGTCGCGAC 58.731 55.000 30.67 30.67 0.00 5.19
570 669 0.457853 GCTGATAACACTGGTCGCGA 60.458 55.000 3.71 3.71 0.00 5.87
571 670 0.735978 TGCTGATAACACTGGTCGCG 60.736 55.000 0.00 0.00 0.00 5.87
572 671 1.002366 CTGCTGATAACACTGGTCGC 58.998 55.000 0.00 0.00 0.00 5.19
573 672 1.002366 GCTGCTGATAACACTGGTCG 58.998 55.000 0.00 0.00 0.00 4.79
574 673 2.393271 AGCTGCTGATAACACTGGTC 57.607 50.000 0.00 0.00 0.00 4.02
575 674 3.600388 GTTAGCTGCTGATAACACTGGT 58.400 45.455 22.13 0.00 42.61 4.00
576 675 2.939103 GGTTAGCTGCTGATAACACTGG 59.061 50.000 26.26 0.00 44.24 4.00
577 676 3.599343 TGGTTAGCTGCTGATAACACTG 58.401 45.455 26.26 0.00 44.24 3.66
578 677 3.981071 TGGTTAGCTGCTGATAACACT 57.019 42.857 26.26 3.31 44.24 3.55
589 688 7.502226 TGAAACCCTAATGAATATGGTTAGCTG 59.498 37.037 0.00 0.00 40.42 4.24
591 690 7.719633 TCTGAAACCCTAATGAATATGGTTAGC 59.280 37.037 0.00 0.00 40.42 3.09
592 691 9.277783 CTCTGAAACCCTAATGAATATGGTTAG 57.722 37.037 0.00 0.00 40.42 2.34
593 692 8.998814 TCTCTGAAACCCTAATGAATATGGTTA 58.001 33.333 0.00 0.00 40.42 2.85
594 693 7.872138 TCTCTGAAACCCTAATGAATATGGTT 58.128 34.615 0.00 0.00 42.34 3.67
595 694 7.451731 TCTCTGAAACCCTAATGAATATGGT 57.548 36.000 0.00 0.00 34.32 3.55
596 695 8.790718 CAATCTCTGAAACCCTAATGAATATGG 58.209 37.037 0.00 0.00 0.00 2.74
597 696 9.565090 TCAATCTCTGAAACCCTAATGAATATG 57.435 33.333 0.00 0.00 0.00 1.78
598 697 9.790344 CTCAATCTCTGAAACCCTAATGAATAT 57.210 33.333 0.00 0.00 32.17 1.28
599 698 8.772250 ACTCAATCTCTGAAACCCTAATGAATA 58.228 33.333 0.00 0.00 32.17 1.75
601 700 7.020827 ACTCAATCTCTGAAACCCTAATGAA 57.979 36.000 0.00 0.00 32.17 2.57
613 712 5.934625 GCTGGAAAGTTAACTCAATCTCTGA 59.065 40.000 8.95 0.00 0.00 3.27
615 714 5.936956 CAGCTGGAAAGTTAACTCAATCTCT 59.063 40.000 8.95 0.47 0.00 3.10
620 719 2.884639 GCCAGCTGGAAAGTTAACTCAA 59.115 45.455 37.21 0.00 37.39 3.02
622 721 2.784347 AGCCAGCTGGAAAGTTAACTC 58.216 47.619 37.21 14.11 37.39 3.01
625 724 2.238521 CCAAGCCAGCTGGAAAGTTAA 58.761 47.619 37.21 0.00 37.39 2.01
636 735 2.140138 AAACAACCCCCAAGCCAGC 61.140 57.895 0.00 0.00 0.00 4.85
648 747 2.223711 ACTGAACCCGAATGCAAACAAC 60.224 45.455 0.00 0.00 0.00 3.32
660 759 2.134346 CATTGGCAAAAACTGAACCCG 58.866 47.619 3.01 0.00 0.00 5.28
675 774 4.202050 CCTCCGGCTTTTATCTTTCATTGG 60.202 45.833 0.00 0.00 0.00 3.16
676 775 4.202050 CCCTCCGGCTTTTATCTTTCATTG 60.202 45.833 0.00 0.00 0.00 2.82
706 809 1.419012 CCTTGAGGATAGGAGCATGCA 59.581 52.381 21.98 0.00 37.39 3.96
728 831 8.407832 CCATGCTCATTTCAGTATACAAATTCA 58.592 33.333 5.50 2.67 0.00 2.57
789 896 1.726853 AGGCAACGCTGTTATCTGTC 58.273 50.000 0.00 0.00 46.39 3.51
802 909 9.285770 GTAGTAGCATAAAAATAACAAGGCAAC 57.714 33.333 0.00 0.00 0.00 4.17
817 924 9.430399 AAATGGTAGACCTTAGTAGTAGCATAA 57.570 33.333 0.00 0.00 34.76 1.90
818 925 9.430399 AAAATGGTAGACCTTAGTAGTAGCATA 57.570 33.333 0.00 0.00 34.76 3.14
820 927 7.729124 AAAATGGTAGACCTTAGTAGTAGCA 57.271 36.000 0.00 0.00 36.82 3.49
822 929 7.494952 GCCAAAAATGGTAGACCTTAGTAGTAG 59.505 40.741 0.00 0.00 36.82 2.57
831 938 3.591977 AGTAGGCCAAAAATGGTAGACCT 59.408 43.478 5.01 0.00 36.82 3.85
835 942 4.396166 CACTCAGTAGGCCAAAAATGGTAG 59.604 45.833 5.01 0.00 0.00 3.18
836 943 4.042311 TCACTCAGTAGGCCAAAAATGGTA 59.958 41.667 5.01 0.00 0.00 3.25
838 945 3.420893 TCACTCAGTAGGCCAAAAATGG 58.579 45.455 5.01 0.00 0.00 3.16
842 949 2.224744 TGCATCACTCAGTAGGCCAAAA 60.225 45.455 5.01 0.00 0.00 2.44
843 950 1.350684 TGCATCACTCAGTAGGCCAAA 59.649 47.619 5.01 0.00 0.00 3.28
844 951 0.983467 TGCATCACTCAGTAGGCCAA 59.017 50.000 5.01 0.00 0.00 4.52
856 984 3.059352 AGGTTCTACCAAGTGCATCAC 57.941 47.619 0.00 0.00 41.95 3.06
857 985 3.327757 AGAAGGTTCTACCAAGTGCATCA 59.672 43.478 0.00 0.00 41.95 3.07
862 990 9.319143 CTGATAATAAGAAGGTTCTACCAAGTG 57.681 37.037 0.00 0.00 41.95 3.16
864 992 7.987458 TGCTGATAATAAGAAGGTTCTACCAAG 59.013 37.037 0.00 0.00 41.95 3.61
880 1008 9.806203 CTTGGAATGAAACATTTGCTGATAATA 57.194 29.630 0.00 0.00 0.00 0.98
886 1014 4.312443 AGCTTGGAATGAAACATTTGCTG 58.688 39.130 0.00 0.00 0.00 4.41
887 1015 4.612264 AGCTTGGAATGAAACATTTGCT 57.388 36.364 0.00 0.00 0.00 3.91
894 1022 4.936891 AGTTGTCAAGCTTGGAATGAAAC 58.063 39.130 25.73 18.36 0.00 2.78
937 1065 6.211584 AGAGAGCAGGAAACTTGTACAGATAA 59.788 38.462 0.00 0.00 40.21 1.75
938 1066 5.717178 AGAGAGCAGGAAACTTGTACAGATA 59.283 40.000 0.00 0.00 40.21 1.98
963 1091 4.765273 TGAGTACACAGAAAGTCAGCAAA 58.235 39.130 0.00 0.00 0.00 3.68
969 1097 4.025647 GCACAGTTGAGTACACAGAAAGTC 60.026 45.833 0.00 0.00 0.00 3.01
999 1127 0.659427 CGATGTACTTGCCAGCCATG 59.341 55.000 0.00 0.00 0.00 3.66
1108 1236 3.130516 CACGACAGGAACTATAGAGGCAA 59.869 47.826 6.78 0.00 36.02 4.52
1111 1239 5.776173 ATTCACGACAGGAACTATAGAGG 57.224 43.478 6.78 0.00 36.02 3.69
1127 1255 4.329801 TGCTGACTATGCTGTTAATTCACG 59.670 41.667 0.00 0.00 0.00 4.35
1135 1263 4.633126 CAGTGTAATGCTGACTATGCTGTT 59.367 41.667 0.00 0.00 36.12 3.16
1175 1304 1.792367 GGAAATGGTTTTTGACTGCGC 59.208 47.619 0.00 0.00 0.00 6.09
1176 1305 3.369546 AGGAAATGGTTTTTGACTGCG 57.630 42.857 0.00 0.00 0.00 5.18
1178 1307 5.874261 ACACAAAGGAAATGGTTTTTGACTG 59.126 36.000 3.15 0.00 35.21 3.51
1179 1308 6.048732 ACACAAAGGAAATGGTTTTTGACT 57.951 33.333 3.15 0.00 35.21 3.41
1180 1309 6.735678 AACACAAAGGAAATGGTTTTTGAC 57.264 33.333 3.15 0.00 35.21 3.18
1206 1336 5.361285 AGGAGTAACAGCATGGTAAGAGTAG 59.639 44.000 0.00 0.00 41.90 2.57
1209 1339 4.744795 AGGAGTAACAGCATGGTAAGAG 57.255 45.455 0.00 0.00 41.90 2.85
1320 1450 2.180204 GTTCATGATGACCGGCGGG 61.180 63.158 31.78 12.53 40.11 6.13
1409 1539 3.186119 GCAGTGAGTTCAGTCTAGATGC 58.814 50.000 0.00 0.00 0.00 3.91
1445 1575 1.337635 GCCATGAAAAATGGTGCGGAA 60.338 47.619 6.25 0.00 41.17 4.30
1486 1616 1.768112 CGCAAACCTGAAACGGACGT 61.768 55.000 0.00 0.00 0.00 4.34
1627 1757 3.728845 TCAGAAGAAATATAGCCACGGC 58.271 45.455 0.00 0.00 42.33 5.68
1837 1967 6.089417 GTTTACCAACACAAGCAATAAGCATC 59.911 38.462 0.00 0.00 38.12 3.91
1908 2039 0.392461 GCAGTTCAATCTACCCGGCA 60.392 55.000 0.00 0.00 0.00 5.69
1912 2043 5.112686 CAGAGTTAGCAGTTCAATCTACCC 58.887 45.833 0.00 0.00 0.00 3.69
1915 2046 5.717178 AGACCAGAGTTAGCAGTTCAATCTA 59.283 40.000 0.00 0.00 0.00 1.98
1924 2055 3.511934 ACTAACCAGACCAGAGTTAGCAG 59.488 47.826 8.63 0.00 44.36 4.24
1937 2068 4.404073 ACACCAATGCAAAAACTAACCAGA 59.596 37.500 0.00 0.00 0.00 3.86
1987 2118 0.250234 CTGAACCTCCATCGAAGGCA 59.750 55.000 0.65 0.00 37.42 4.75
1988 2119 0.537188 TCTGAACCTCCATCGAAGGC 59.463 55.000 0.65 0.00 37.42 4.35
1990 2121 2.208431 GCATCTGAACCTCCATCGAAG 58.792 52.381 0.00 0.00 0.00 3.79
1993 2124 1.134580 ACTGCATCTGAACCTCCATCG 60.135 52.381 0.00 0.00 0.00 3.84
2038 2205 4.524714 CAGGGGTAGGATGTCTGTACTATG 59.475 50.000 0.00 0.00 0.00 2.23
2040 2207 3.530564 ACAGGGGTAGGATGTCTGTACTA 59.469 47.826 0.00 0.00 36.98 1.82
2060 2233 1.649321 ATCTCTCCAAGGTGCTCACA 58.351 50.000 2.21 0.00 0.00 3.58
2079 2252 3.253921 CACAAGATGACATGCCAACTCAA 59.746 43.478 0.00 0.00 0.00 3.02
2090 2263 7.011950 ACAACTACGAAAAATCACAAGATGACA 59.988 33.333 0.00 0.00 41.24 3.58
2091 2264 7.352739 ACAACTACGAAAAATCACAAGATGAC 58.647 34.615 0.00 0.00 41.24 3.06
2092 2265 7.490962 ACAACTACGAAAAATCACAAGATGA 57.509 32.000 0.00 0.00 43.13 2.92
2093 2266 8.495949 ACTACAACTACGAAAAATCACAAGATG 58.504 33.333 0.00 0.00 33.90 2.90
2094 2267 8.603242 ACTACAACTACGAAAAATCACAAGAT 57.397 30.769 0.00 0.00 35.53 2.40
2095 2268 7.096353 CGACTACAACTACGAAAAATCACAAGA 60.096 37.037 0.00 0.00 0.00 3.02
2096 2269 7.001922 CGACTACAACTACGAAAAATCACAAG 58.998 38.462 0.00 0.00 0.00 3.16
2097 2270 6.696583 TCGACTACAACTACGAAAAATCACAA 59.303 34.615 0.00 0.00 0.00 3.33
2098 2271 6.207928 TCGACTACAACTACGAAAAATCACA 58.792 36.000 0.00 0.00 0.00 3.58
2099 2272 6.680055 TCGACTACAACTACGAAAAATCAC 57.320 37.500 0.00 0.00 0.00 3.06
2100 2273 6.529125 GGATCGACTACAACTACGAAAAATCA 59.471 38.462 0.00 0.00 38.22 2.57
2101 2274 6.750963 AGGATCGACTACAACTACGAAAAATC 59.249 38.462 0.00 0.00 38.22 2.17
2102 2275 6.628185 AGGATCGACTACAACTACGAAAAAT 58.372 36.000 0.00 0.00 38.22 1.82
2103 2276 6.017400 AGGATCGACTACAACTACGAAAAA 57.983 37.500 0.00 0.00 38.22 1.94
2104 2277 5.633830 AGGATCGACTACAACTACGAAAA 57.366 39.130 0.00 0.00 38.22 2.29
2105 2278 5.065218 GGTAGGATCGACTACAACTACGAAA 59.935 44.000 13.41 0.00 43.99 3.46
2106 2279 4.572389 GGTAGGATCGACTACAACTACGAA 59.428 45.833 13.41 0.00 43.99 3.85
2107 2280 4.122776 GGTAGGATCGACTACAACTACGA 58.877 47.826 13.41 0.00 43.99 3.43
2108 2281 3.249559 GGGTAGGATCGACTACAACTACG 59.750 52.174 13.41 0.00 43.99 3.51
2109 2282 3.567585 GGGGTAGGATCGACTACAACTAC 59.432 52.174 13.41 7.98 43.99 2.73
2110 2283 3.461085 AGGGGTAGGATCGACTACAACTA 59.539 47.826 13.41 0.00 43.99 2.24
2111 2284 2.244252 AGGGGTAGGATCGACTACAACT 59.756 50.000 13.41 8.53 43.99 3.16
2112 2285 2.664015 AGGGGTAGGATCGACTACAAC 58.336 52.381 13.41 6.94 43.99 3.32
2113 2286 4.105217 TCATAGGGGTAGGATCGACTACAA 59.895 45.833 13.41 0.00 43.99 2.41
2114 2287 3.654321 TCATAGGGGTAGGATCGACTACA 59.346 47.826 13.41 0.00 43.99 2.74
2115 2288 4.263435 CTCATAGGGGTAGGATCGACTAC 58.737 52.174 4.94 4.94 42.00 2.73
2116 2289 3.308259 GCTCATAGGGGTAGGATCGACTA 60.308 52.174 0.00 0.00 0.00 2.59
2117 2290 2.555670 GCTCATAGGGGTAGGATCGACT 60.556 54.545 0.00 0.00 0.00 4.18
2118 2291 1.819903 GCTCATAGGGGTAGGATCGAC 59.180 57.143 0.00 0.00 0.00 4.20
2119 2292 1.427753 TGCTCATAGGGGTAGGATCGA 59.572 52.381 0.00 0.00 0.00 3.59
2120 2293 1.924731 TGCTCATAGGGGTAGGATCG 58.075 55.000 0.00 0.00 0.00 3.69
2121 2294 3.718723 AGATGCTCATAGGGGTAGGATC 58.281 50.000 0.00 0.00 38.09 3.36
2122 2295 3.862600 AGATGCTCATAGGGGTAGGAT 57.137 47.619 0.00 0.00 0.00 3.24
2123 2296 3.511477 GAAGATGCTCATAGGGGTAGGA 58.489 50.000 0.00 0.00 0.00 2.94
2124 2297 2.232452 CGAAGATGCTCATAGGGGTAGG 59.768 54.545 0.00 0.00 0.00 3.18
2125 2298 3.157881 TCGAAGATGCTCATAGGGGTAG 58.842 50.000 0.00 0.00 0.00 3.18
2126 2299 3.157881 CTCGAAGATGCTCATAGGGGTA 58.842 50.000 0.00 0.00 33.89 3.69
2127 2300 1.967066 CTCGAAGATGCTCATAGGGGT 59.033 52.381 0.00 0.00 33.89 4.95
2128 2301 2.242926 TCTCGAAGATGCTCATAGGGG 58.757 52.381 0.00 0.00 33.89 4.79
2129 2302 4.704540 AGTATCTCGAAGATGCTCATAGGG 59.295 45.833 8.77 0.00 42.80 3.53
2130 2303 5.414144 TCAGTATCTCGAAGATGCTCATAGG 59.586 44.000 10.77 3.34 42.80 2.57
2131 2304 6.493449 TCAGTATCTCGAAGATGCTCATAG 57.507 41.667 10.77 3.60 42.80 2.23
2132 2305 5.106357 GCTCAGTATCTCGAAGATGCTCATA 60.106 44.000 10.77 2.85 42.80 2.15
2133 2306 4.321156 GCTCAGTATCTCGAAGATGCTCAT 60.321 45.833 10.77 0.00 42.80 2.90
2134 2307 3.004210 GCTCAGTATCTCGAAGATGCTCA 59.996 47.826 10.77 1.21 42.80 4.26
2135 2308 3.253188 AGCTCAGTATCTCGAAGATGCTC 59.747 47.826 10.77 3.71 42.80 4.26
2136 2309 3.004629 CAGCTCAGTATCTCGAAGATGCT 59.995 47.826 8.77 8.77 46.41 3.79
2137 2310 3.004210 TCAGCTCAGTATCTCGAAGATGC 59.996 47.826 7.40 6.33 37.56 3.91
2138 2311 4.036144 TGTCAGCTCAGTATCTCGAAGATG 59.964 45.833 7.40 0.00 35.37 2.90
2139 2312 4.203226 TGTCAGCTCAGTATCTCGAAGAT 58.797 43.478 0.00 0.00 38.70 2.40
2140 2313 3.610911 TGTCAGCTCAGTATCTCGAAGA 58.389 45.455 0.00 0.00 0.00 2.87
2141 2314 4.566545 ATGTCAGCTCAGTATCTCGAAG 57.433 45.455 0.00 0.00 0.00 3.79
2142 2315 4.991153 AATGTCAGCTCAGTATCTCGAA 57.009 40.909 0.00 0.00 0.00 3.71
2143 2316 4.399303 TGAAATGTCAGCTCAGTATCTCGA 59.601 41.667 0.00 0.00 0.00 4.04
2144 2317 4.676546 TGAAATGTCAGCTCAGTATCTCG 58.323 43.478 0.00 0.00 0.00 4.04
2145 2318 6.768029 GATGAAATGTCAGCTCAGTATCTC 57.232 41.667 0.00 0.00 37.20 2.75
2155 2328 7.811236 TGAAAAATCTCAAGATGAAATGTCAGC 59.189 33.333 0.00 0.00 40.63 4.26
2156 2329 9.856488 ATGAAAAATCTCAAGATGAAATGTCAG 57.144 29.630 0.00 0.00 37.14 3.51
2162 2335 9.219603 ACGACTATGAAAAATCTCAAGATGAAA 57.780 29.630 0.00 0.00 34.49 2.69
2163 2336 8.777865 ACGACTATGAAAAATCTCAAGATGAA 57.222 30.769 0.00 0.00 34.49 2.57
2216 2389 2.894307 AATTCAAGCCGCGAACTAAC 57.106 45.000 8.23 0.00 0.00 2.34
2252 2425 3.193263 AGCTGACAACTCGCATCAATAG 58.807 45.455 0.00 0.00 0.00 1.73
2273 2446 3.749088 CCTTTTACATGTACCGCTGTCAA 59.251 43.478 4.68 0.00 0.00 3.18
2274 2447 3.244284 ACCTTTTACATGTACCGCTGTCA 60.244 43.478 4.68 0.00 0.00 3.58
2275 2448 3.332034 ACCTTTTACATGTACCGCTGTC 58.668 45.455 4.68 0.00 0.00 3.51
2279 2452 6.484818 TCTTTTACCTTTTACATGTACCGC 57.515 37.500 4.68 0.00 0.00 5.68
2280 2453 8.388103 CAGATCTTTTACCTTTTACATGTACCG 58.612 37.037 4.68 0.00 0.00 4.02
2281 2454 9.227777 ACAGATCTTTTACCTTTTACATGTACC 57.772 33.333 4.68 0.00 0.00 3.34
2284 2457 9.574516 AGAACAGATCTTTTACCTTTTACATGT 57.425 29.630 2.69 2.69 33.39 3.21
2287 2460 9.273016 CAGAGAACAGATCTTTTACCTTTTACA 57.727 33.333 0.00 0.00 38.96 2.41
2288 2461 8.231161 GCAGAGAACAGATCTTTTACCTTTTAC 58.769 37.037 0.00 0.00 38.96 2.01
2289 2462 8.157476 AGCAGAGAACAGATCTTTTACCTTTTA 58.843 33.333 0.00 0.00 38.96 1.52
2290 2463 7.001073 AGCAGAGAACAGATCTTTTACCTTTT 58.999 34.615 0.00 0.00 38.96 2.27
2291 2464 6.538263 AGCAGAGAACAGATCTTTTACCTTT 58.462 36.000 0.00 0.00 38.96 3.11
2292 2465 6.120507 AGCAGAGAACAGATCTTTTACCTT 57.879 37.500 0.00 0.00 38.96 3.50
2293 2466 5.753721 AGCAGAGAACAGATCTTTTACCT 57.246 39.130 0.00 0.00 38.96 3.08
2294 2467 7.907214 TTAAGCAGAGAACAGATCTTTTACC 57.093 36.000 0.00 0.00 38.96 2.85
2346 2521 0.992072 CATGTACCGCTGACAACTCG 59.008 55.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.