Multiple sequence alignment - TraesCS4A01G445200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G445200 chr4A 100.000 3601 0 0 1 3601 713185975 713189575 0.000000e+00 6650
1 TraesCS4A01G445200 chr4A 94.096 2964 124 23 671 3601 690206557 690209502 0.000000e+00 4457
2 TraesCS4A01G445200 chr4A 94.070 489 21 4 362 849 564350067 564349586 0.000000e+00 736
3 TraesCS4A01G445200 chr2B 95.009 3246 146 11 363 3601 55410964 55414200 0.000000e+00 5083
4 TraesCS4A01G445200 chr2B 99.171 362 3 0 1 362 129617820 129617459 0.000000e+00 652
5 TraesCS4A01G445200 chr3B 93.324 1468 82 12 361 1824 624661764 624660309 0.000000e+00 2154
6 TraesCS4A01G445200 chr3B 99.448 362 2 0 1 362 26983513 26983874 0.000000e+00 658
7 TraesCS4A01G445200 chr7B 89.572 1074 82 13 872 1930 3896364 3895306 0.000000e+00 1336
8 TraesCS4A01G445200 chr7B 99.171 362 3 0 1 362 521162539 521162900 0.000000e+00 652
9 TraesCS4A01G445200 chr7B 90.886 395 26 5 2460 2847 3894892 3894501 4.120000e-144 521
10 TraesCS4A01G445200 chr7B 80.420 286 35 11 2058 2332 3895193 3894918 7.890000e-47 198
11 TraesCS4A01G445200 chr7D 88.241 1080 99 19 867 1930 63485407 63484340 0.000000e+00 1266
12 TraesCS4A01G445200 chr7D 86.124 418 39 11 2434 2847 63483964 63483562 1.990000e-117 433
13 TraesCS4A01G445200 chr7D 82.051 312 33 16 2005 2307 63484303 63484006 9.990000e-61 244
14 TraesCS4A01G445200 chr6B 95.883 753 27 4 2853 3601 12832812 12832060 0.000000e+00 1216
15 TraesCS4A01G445200 chr6B 99.171 362 2 1 1 362 451369181 451369541 0.000000e+00 651
16 TraesCS4A01G445200 chr6B 90.833 120 10 1 2320 2438 692964074 692964193 3.720000e-35 159
17 TraesCS4A01G445200 chr7A 95.485 753 29 5 2853 3601 16088237 16088988 0.000000e+00 1197
18 TraesCS4A01G445200 chr7A 95.352 753 30 5 2853 3601 16107521 16108272 0.000000e+00 1192
19 TraesCS4A01G445200 chr7A 86.745 1109 100 24 853 1930 66284638 66283546 0.000000e+00 1190
20 TraesCS4A01G445200 chr7A 95.219 753 31 5 2853 3601 81681683 81680932 0.000000e+00 1186
21 TraesCS4A01G445200 chr7A 93.763 497 23 5 363 858 693950715 693950226 0.000000e+00 739
22 TraesCS4A01G445200 chr7A 91.860 344 23 3 2468 2809 66283136 66282796 3.250000e-130 475
23 TraesCS4A01G445200 chr7A 83.465 254 28 7 2058 2307 66283435 66283192 1.300000e-54 224
24 TraesCS4A01G445200 chr6A 95.352 753 30 5 2853 3601 281226897 281227648 0.000000e+00 1192
25 TraesCS4A01G445200 chr3A 95.086 753 33 4 2853 3601 744951380 744952132 0.000000e+00 1182
26 TraesCS4A01G445200 chr3A 94.954 753 34 4 2853 3601 745024308 745025060 0.000000e+00 1177
27 TraesCS4A01G445200 chr3A 93.561 497 22 6 363 858 48284103 48283616 0.000000e+00 732
28 TraesCS4A01G445200 chr5A 93.976 498 22 7 362 858 149797187 149796697 0.000000e+00 747
29 TraesCS4A01G445200 chr5A 93.360 497 19 10 363 858 8132326 8131843 0.000000e+00 723
30 TraesCS4A01G445200 chr2A 94.033 486 22 5 366 850 72604935 72604456 0.000000e+00 730
31 TraesCS4A01G445200 chr4B 93.827 486 25 5 374 858 102790958 102791439 0.000000e+00 726
32 TraesCS4A01G445200 chr4B 98.895 362 4 0 1 362 636418387 636418026 0.000000e+00 647
33 TraesCS4A01G445200 chr5B 99.448 362 2 0 1 362 676823720 676824081 0.000000e+00 658
34 TraesCS4A01G445200 chr5B 99.171 362 3 0 1 362 655527808 655528169 0.000000e+00 652
35 TraesCS4A01G445200 chr1B 98.895 362 4 0 1 362 495995876 495996237 0.000000e+00 647
36 TraesCS4A01G445200 chr1B 98.895 362 4 0 1 362 565534566 565534927 0.000000e+00 647
37 TraesCS4A01G445200 chr1B 94.545 110 6 0 2331 2440 113565124 113565233 1.720000e-38 171
38 TraesCS4A01G445200 chr1B 91.667 120 9 1 2320 2438 91532988 91533107 8.000000e-37 165
39 TraesCS4A01G445200 chr1B 92.241 116 9 0 2323 2438 283119184 283119069 8.000000e-37 165
40 TraesCS4A01G445200 chr2D 94.783 115 6 0 2324 2438 617397744 617397858 2.860000e-41 180
41 TraesCS4A01G445200 chr6D 93.805 113 7 0 2328 2440 308219520 308219408 1.720000e-38 171
42 TraesCS4A01G445200 chr4D 93.043 115 8 0 2323 2437 16450345 16450231 6.180000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G445200 chr4A 713185975 713189575 3600 False 6650.000000 6650 100.000000 1 3601 1 chr4A.!!$F2 3600
1 TraesCS4A01G445200 chr4A 690206557 690209502 2945 False 4457.000000 4457 94.096000 671 3601 1 chr4A.!!$F1 2930
2 TraesCS4A01G445200 chr2B 55410964 55414200 3236 False 5083.000000 5083 95.009000 363 3601 1 chr2B.!!$F1 3238
3 TraesCS4A01G445200 chr3B 624660309 624661764 1455 True 2154.000000 2154 93.324000 361 1824 1 chr3B.!!$R1 1463
4 TraesCS4A01G445200 chr7B 3894501 3896364 1863 True 685.000000 1336 86.959333 872 2847 3 chr7B.!!$R1 1975
5 TraesCS4A01G445200 chr7D 63483562 63485407 1845 True 647.666667 1266 85.472000 867 2847 3 chr7D.!!$R1 1980
6 TraesCS4A01G445200 chr6B 12832060 12832812 752 True 1216.000000 1216 95.883000 2853 3601 1 chr6B.!!$R1 748
7 TraesCS4A01G445200 chr7A 16088237 16088988 751 False 1197.000000 1197 95.485000 2853 3601 1 chr7A.!!$F1 748
8 TraesCS4A01G445200 chr7A 16107521 16108272 751 False 1192.000000 1192 95.352000 2853 3601 1 chr7A.!!$F2 748
9 TraesCS4A01G445200 chr7A 81680932 81681683 751 True 1186.000000 1186 95.219000 2853 3601 1 chr7A.!!$R1 748
10 TraesCS4A01G445200 chr7A 66282796 66284638 1842 True 629.666667 1190 87.356667 853 2809 3 chr7A.!!$R3 1956
11 TraesCS4A01G445200 chr6A 281226897 281227648 751 False 1192.000000 1192 95.352000 2853 3601 1 chr6A.!!$F1 748
12 TraesCS4A01G445200 chr3A 744951380 744952132 752 False 1182.000000 1182 95.086000 2853 3601 1 chr3A.!!$F1 748
13 TraesCS4A01G445200 chr3A 745024308 745025060 752 False 1177.000000 1177 94.954000 2853 3601 1 chr3A.!!$F2 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.034960 GAAAGGGAGCTGAGAACCCC 60.035 60.0 10.03 0.64 44.21 4.95 F
331 332 0.179215 GCGGTTGTCAATGCTTCTCG 60.179 55.0 5.72 0.00 0.00 4.04 F
1512 1546 0.249868 TCGACACTGTCTTTGCCTGG 60.250 55.0 7.58 0.00 0.00 4.45 F
1587 1621 0.457851 GACAGCTCAGATACGTGGCT 59.542 55.0 0.00 0.00 0.00 4.75 F
1673 1707 0.476611 AAGTTCCCCAGGGAGAAGCT 60.477 55.0 7.25 6.54 46.06 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 1178 0.247736 GTGTCACGGAGGAAGAGCAT 59.752 55.000 0.00 0.0 0.00 3.79 R
1915 1957 0.399454 ACAGACCTGAGCTGCATTGT 59.601 50.000 1.02 0.0 36.86 2.71 R
2465 2567 0.330604 ATCTCCCAAGCTGCACACAT 59.669 50.000 1.02 0.0 0.00 3.21 R
2513 2615 1.451504 CACTCTCAACACCAGCCCA 59.548 57.895 0.00 0.0 0.00 5.36 R
2818 2927 1.987855 CGAAGGGGCAGGAGTGGTA 60.988 63.158 0.00 0.0 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.659183 ACTGCCCAGAGAAATTATGCT 57.341 42.857 1.69 0.00 0.00 3.79
21 22 4.778213 ACTGCCCAGAGAAATTATGCTA 57.222 40.909 1.69 0.00 0.00 3.49
22 23 4.455606 ACTGCCCAGAGAAATTATGCTAC 58.544 43.478 1.69 0.00 0.00 3.58
23 24 3.817647 CTGCCCAGAGAAATTATGCTACC 59.182 47.826 0.00 0.00 0.00 3.18
24 25 3.201930 TGCCCAGAGAAATTATGCTACCA 59.798 43.478 0.00 0.00 0.00 3.25
25 26 3.565902 GCCCAGAGAAATTATGCTACCAC 59.434 47.826 0.00 0.00 0.00 4.16
26 27 4.687219 GCCCAGAGAAATTATGCTACCACT 60.687 45.833 0.00 0.00 0.00 4.00
27 28 4.818546 CCCAGAGAAATTATGCTACCACTG 59.181 45.833 0.00 0.00 0.00 3.66
28 29 5.396772 CCCAGAGAAATTATGCTACCACTGA 60.397 44.000 0.00 0.00 0.00 3.41
29 30 6.115446 CCAGAGAAATTATGCTACCACTGAA 58.885 40.000 0.00 0.00 0.00 3.02
30 31 6.599244 CCAGAGAAATTATGCTACCACTGAAA 59.401 38.462 0.00 0.00 0.00 2.69
31 32 7.121168 CCAGAGAAATTATGCTACCACTGAAAA 59.879 37.037 0.00 0.00 0.00 2.29
32 33 8.514594 CAGAGAAATTATGCTACCACTGAAAAA 58.485 33.333 0.00 0.00 0.00 1.94
33 34 8.734386 AGAGAAATTATGCTACCACTGAAAAAG 58.266 33.333 0.00 0.00 0.00 2.27
34 35 8.635765 AGAAATTATGCTACCACTGAAAAAGA 57.364 30.769 0.00 0.00 0.00 2.52
35 36 9.077885 AGAAATTATGCTACCACTGAAAAAGAA 57.922 29.630 0.00 0.00 0.00 2.52
36 37 9.860898 GAAATTATGCTACCACTGAAAAAGAAT 57.139 29.630 0.00 0.00 0.00 2.40
38 39 9.860898 AATTATGCTACCACTGAAAAAGAATTC 57.139 29.630 0.00 0.00 0.00 2.17
39 40 8.635765 TTATGCTACCACTGAAAAAGAATTCT 57.364 30.769 0.88 0.88 0.00 2.40
40 41 6.959639 TGCTACCACTGAAAAAGAATTCTT 57.040 33.333 15.11 15.11 37.91 2.52
41 42 8.635765 ATGCTACCACTGAAAAAGAATTCTTA 57.364 30.769 20.76 4.75 34.61 2.10
42 43 8.099364 TGCTACCACTGAAAAAGAATTCTTAG 57.901 34.615 20.76 15.95 34.61 2.18
43 44 7.024171 GCTACCACTGAAAAAGAATTCTTAGC 58.976 38.462 20.76 16.54 34.61 3.09
44 45 6.959639 ACCACTGAAAAAGAATTCTTAGCA 57.040 33.333 20.76 16.42 34.61 3.49
45 46 6.974965 ACCACTGAAAAAGAATTCTTAGCAG 58.025 36.000 26.69 26.69 34.61 4.24
46 47 6.547510 ACCACTGAAAAAGAATTCTTAGCAGT 59.452 34.615 27.53 27.53 39.77 4.40
47 48 7.068716 ACCACTGAAAAAGAATTCTTAGCAGTT 59.931 33.333 29.10 20.69 38.48 3.16
48 49 7.380602 CCACTGAAAAAGAATTCTTAGCAGTTG 59.619 37.037 29.10 25.09 38.48 3.16
49 50 7.917505 CACTGAAAAAGAATTCTTAGCAGTTGT 59.082 33.333 29.10 17.90 38.48 3.32
50 51 7.917505 ACTGAAAAAGAATTCTTAGCAGTTGTG 59.082 33.333 27.53 15.46 37.91 3.33
51 52 7.771183 TGAAAAAGAATTCTTAGCAGTTGTGT 58.229 30.769 20.76 0.00 34.61 3.72
52 53 8.250332 TGAAAAAGAATTCTTAGCAGTTGTGTT 58.750 29.630 20.76 5.03 34.61 3.32
53 54 9.087424 GAAAAAGAATTCTTAGCAGTTGTGTTT 57.913 29.630 20.76 12.76 34.61 2.83
54 55 7.992180 AAAGAATTCTTAGCAGTTGTGTTTG 57.008 32.000 20.76 0.00 34.61 2.93
55 56 5.523369 AGAATTCTTAGCAGTTGTGTTTGC 58.477 37.500 0.88 0.00 40.57 3.68
56 57 4.916983 ATTCTTAGCAGTTGTGTTTGCA 57.083 36.364 0.00 0.00 42.67 4.08
57 58 4.916983 TTCTTAGCAGTTGTGTTTGCAT 57.083 36.364 0.00 0.00 42.67 3.96
58 59 4.227512 TCTTAGCAGTTGTGTTTGCATG 57.772 40.909 0.00 0.00 42.67 4.06
59 60 3.631686 TCTTAGCAGTTGTGTTTGCATGT 59.368 39.130 0.00 0.00 42.67 3.21
60 61 2.212869 AGCAGTTGTGTTTGCATGTG 57.787 45.000 0.00 0.00 42.67 3.21
61 62 1.750206 AGCAGTTGTGTTTGCATGTGA 59.250 42.857 0.00 0.00 42.67 3.58
62 63 2.363038 AGCAGTTGTGTTTGCATGTGAT 59.637 40.909 0.00 0.00 42.67 3.06
63 64 3.569277 AGCAGTTGTGTTTGCATGTGATA 59.431 39.130 0.00 0.00 42.67 2.15
64 65 4.037803 AGCAGTTGTGTTTGCATGTGATAA 59.962 37.500 0.00 0.00 42.67 1.75
65 66 4.383649 GCAGTTGTGTTTGCATGTGATAAG 59.616 41.667 0.00 0.00 40.02 1.73
66 67 5.522456 CAGTTGTGTTTGCATGTGATAAGT 58.478 37.500 0.00 0.00 0.00 2.24
67 68 5.978919 CAGTTGTGTTTGCATGTGATAAGTT 59.021 36.000 0.00 0.00 0.00 2.66
68 69 6.476380 CAGTTGTGTTTGCATGTGATAAGTTT 59.524 34.615 0.00 0.00 0.00 2.66
69 70 7.647318 CAGTTGTGTTTGCATGTGATAAGTTTA 59.353 33.333 0.00 0.00 0.00 2.01
70 71 7.862372 AGTTGTGTTTGCATGTGATAAGTTTAG 59.138 33.333 0.00 0.00 0.00 1.85
71 72 7.503521 TGTGTTTGCATGTGATAAGTTTAGA 57.496 32.000 0.00 0.00 0.00 2.10
72 73 8.109705 TGTGTTTGCATGTGATAAGTTTAGAT 57.890 30.769 0.00 0.00 0.00 1.98
73 74 8.236586 TGTGTTTGCATGTGATAAGTTTAGATC 58.763 33.333 0.00 0.00 0.00 2.75
74 75 8.454106 GTGTTTGCATGTGATAAGTTTAGATCT 58.546 33.333 0.00 0.00 0.00 2.75
75 76 9.013229 TGTTTGCATGTGATAAGTTTAGATCTT 57.987 29.630 0.00 0.00 0.00 2.40
105 106 8.684386 TGTTGATTCCAAAGTTACTATTCACA 57.316 30.769 0.00 0.00 33.49 3.58
106 107 8.564574 TGTTGATTCCAAAGTTACTATTCACAC 58.435 33.333 0.00 0.00 33.49 3.82
107 108 8.784043 GTTGATTCCAAAGTTACTATTCACACT 58.216 33.333 0.00 0.00 33.49 3.55
108 109 8.322906 TGATTCCAAAGTTACTATTCACACTG 57.677 34.615 0.00 0.00 0.00 3.66
109 110 8.154203 TGATTCCAAAGTTACTATTCACACTGA 58.846 33.333 0.00 0.00 0.00 3.41
110 111 9.167311 GATTCCAAAGTTACTATTCACACTGAT 57.833 33.333 0.00 0.00 0.00 2.90
111 112 8.547967 TTCCAAAGTTACTATTCACACTGATC 57.452 34.615 0.00 0.00 0.00 2.92
112 113 7.676004 TCCAAAGTTACTATTCACACTGATCA 58.324 34.615 0.00 0.00 0.00 2.92
113 114 8.321353 TCCAAAGTTACTATTCACACTGATCAT 58.679 33.333 0.00 0.00 0.00 2.45
114 115 8.393366 CCAAAGTTACTATTCACACTGATCATG 58.607 37.037 0.00 0.00 0.00 3.07
115 116 7.545362 AAGTTACTATTCACACTGATCATGC 57.455 36.000 0.00 0.00 0.00 4.06
116 117 6.882656 AGTTACTATTCACACTGATCATGCT 58.117 36.000 0.00 0.00 0.00 3.79
117 118 6.760298 AGTTACTATTCACACTGATCATGCTG 59.240 38.462 0.00 0.00 0.00 4.41
118 119 3.875727 ACTATTCACACTGATCATGCTGC 59.124 43.478 0.00 0.00 0.00 5.25
119 120 2.484742 TTCACACTGATCATGCTGCT 57.515 45.000 0.00 0.00 0.00 4.24
120 121 3.615224 TTCACACTGATCATGCTGCTA 57.385 42.857 0.00 0.00 0.00 3.49
121 122 3.832615 TCACACTGATCATGCTGCTAT 57.167 42.857 0.00 0.00 0.00 2.97
122 123 4.146745 TCACACTGATCATGCTGCTATT 57.853 40.909 0.00 0.00 0.00 1.73
123 124 5.280654 TCACACTGATCATGCTGCTATTA 57.719 39.130 0.00 0.00 0.00 0.98
124 125 5.673514 TCACACTGATCATGCTGCTATTAA 58.326 37.500 0.00 0.00 0.00 1.40
125 126 6.114767 TCACACTGATCATGCTGCTATTAAA 58.885 36.000 0.00 0.00 0.00 1.52
126 127 6.769341 TCACACTGATCATGCTGCTATTAAAT 59.231 34.615 0.00 0.00 0.00 1.40
127 128 7.933033 TCACACTGATCATGCTGCTATTAAATA 59.067 33.333 0.00 0.00 0.00 1.40
128 129 8.727910 CACACTGATCATGCTGCTATTAAATAT 58.272 33.333 0.00 0.00 0.00 1.28
129 130 8.944029 ACACTGATCATGCTGCTATTAAATATC 58.056 33.333 0.00 0.00 0.00 1.63
130 131 9.163899 CACTGATCATGCTGCTATTAAATATCT 57.836 33.333 0.00 0.00 0.00 1.98
131 132 9.736414 ACTGATCATGCTGCTATTAAATATCTT 57.264 29.630 0.00 0.00 0.00 2.40
153 154 7.989826 TCTTATGGAAAAGAAAGATGCTAAGC 58.010 34.615 0.00 0.00 32.59 3.09
154 155 5.588958 ATGGAAAAGAAAGATGCTAAGCC 57.411 39.130 0.00 0.00 0.00 4.35
155 156 4.666512 TGGAAAAGAAAGATGCTAAGCCT 58.333 39.130 0.00 0.00 0.00 4.58
156 157 5.815581 TGGAAAAGAAAGATGCTAAGCCTA 58.184 37.500 0.00 0.00 0.00 3.93
157 158 5.882557 TGGAAAAGAAAGATGCTAAGCCTAG 59.117 40.000 0.00 0.00 0.00 3.02
158 159 6.116126 GGAAAAGAAAGATGCTAAGCCTAGA 58.884 40.000 0.00 0.00 0.00 2.43
159 160 6.037720 GGAAAAGAAAGATGCTAAGCCTAGAC 59.962 42.308 0.00 0.00 0.00 2.59
160 161 5.948742 AAGAAAGATGCTAAGCCTAGACT 57.051 39.130 0.00 0.00 0.00 3.24
161 162 5.529581 AGAAAGATGCTAAGCCTAGACTC 57.470 43.478 0.00 0.00 0.00 3.36
162 163 4.959210 AGAAAGATGCTAAGCCTAGACTCA 59.041 41.667 0.00 0.00 0.00 3.41
163 164 5.602145 AGAAAGATGCTAAGCCTAGACTCAT 59.398 40.000 0.00 0.00 0.00 2.90
164 165 5.885449 AAGATGCTAAGCCTAGACTCATT 57.115 39.130 0.00 0.00 0.00 2.57
165 166 6.985653 AAGATGCTAAGCCTAGACTCATTA 57.014 37.500 0.00 0.00 0.00 1.90
166 167 6.588719 AGATGCTAAGCCTAGACTCATTAG 57.411 41.667 0.00 0.00 0.00 1.73
167 168 6.310941 AGATGCTAAGCCTAGACTCATTAGA 58.689 40.000 0.00 0.00 0.00 2.10
168 169 6.953520 AGATGCTAAGCCTAGACTCATTAGAT 59.046 38.462 0.00 0.00 0.00 1.98
169 170 6.338214 TGCTAAGCCTAGACTCATTAGATG 57.662 41.667 0.00 0.00 0.00 2.90
170 171 5.244851 TGCTAAGCCTAGACTCATTAGATGG 59.755 44.000 0.00 0.00 0.00 3.51
171 172 5.337169 GCTAAGCCTAGACTCATTAGATGGG 60.337 48.000 0.00 0.00 36.61 4.00
173 174 4.561752 AGCCTAGACTCATTAGATGGGTT 58.438 43.478 0.00 0.00 45.85 4.11
174 175 4.591072 AGCCTAGACTCATTAGATGGGTTC 59.409 45.833 0.00 0.00 45.85 3.62
175 176 4.591072 GCCTAGACTCATTAGATGGGTTCT 59.409 45.833 0.00 0.00 45.85 3.01
176 177 5.279256 GCCTAGACTCATTAGATGGGTTCTC 60.279 48.000 0.00 0.00 45.85 2.87
177 178 6.074648 CCTAGACTCATTAGATGGGTTCTCT 58.925 44.000 0.00 0.00 45.85 3.10
178 179 6.553100 CCTAGACTCATTAGATGGGTTCTCTT 59.447 42.308 0.00 0.00 45.85 2.85
179 180 6.232581 AGACTCATTAGATGGGTTCTCTTG 57.767 41.667 0.00 0.00 45.85 3.02
180 181 4.775236 ACTCATTAGATGGGTTCTCTTGC 58.225 43.478 0.00 0.00 42.52 4.01
181 182 4.472833 ACTCATTAGATGGGTTCTCTTGCT 59.527 41.667 0.00 0.00 42.52 3.91
182 183 5.028549 TCATTAGATGGGTTCTCTTGCTC 57.971 43.478 0.00 0.00 35.79 4.26
183 184 3.914426 TTAGATGGGTTCTCTTGCTCC 57.086 47.619 0.00 0.00 35.79 4.70
184 185 1.661463 AGATGGGTTCTCTTGCTCCA 58.339 50.000 0.00 0.00 0.00 3.86
185 186 1.988107 AGATGGGTTCTCTTGCTCCAA 59.012 47.619 0.00 0.00 0.00 3.53
186 187 2.026449 AGATGGGTTCTCTTGCTCCAAG 60.026 50.000 0.00 0.00 42.25 3.61
187 188 1.434188 TGGGTTCTCTTGCTCCAAGA 58.566 50.000 7.38 7.38 46.50 3.02
197 198 5.443185 TCTTGCTCCAAGAATTTGACTTG 57.557 39.130 5.26 0.00 45.84 3.16
198 199 3.648339 TGCTCCAAGAATTTGACTTGC 57.352 42.857 0.00 0.00 42.03 4.01
199 200 2.957680 TGCTCCAAGAATTTGACTTGCA 59.042 40.909 0.00 0.00 42.03 4.08
200 201 3.575256 TGCTCCAAGAATTTGACTTGCAT 59.425 39.130 0.00 0.00 42.03 3.96
201 202 4.766373 TGCTCCAAGAATTTGACTTGCATA 59.234 37.500 0.00 0.00 42.03 3.14
202 203 5.419788 TGCTCCAAGAATTTGACTTGCATAT 59.580 36.000 0.00 0.00 42.03 1.78
203 204 6.071221 TGCTCCAAGAATTTGACTTGCATATT 60.071 34.615 0.00 0.00 42.03 1.28
204 205 7.122501 TGCTCCAAGAATTTGACTTGCATATTA 59.877 33.333 0.00 0.00 42.03 0.98
205 206 8.139989 GCTCCAAGAATTTGACTTGCATATTAT 58.860 33.333 0.00 0.00 42.03 1.28
207 208 9.806203 TCCAAGAATTTGACTTGCATATTATTG 57.194 29.630 0.00 0.00 42.06 1.90
208 209 9.806203 CCAAGAATTTGACTTGCATATTATTGA 57.194 29.630 13.61 0.00 43.56 2.57
217 218 9.288576 TGACTTGCATATTATTGATAGAAAGGG 57.711 33.333 0.00 0.00 0.00 3.95
218 219 9.507329 GACTTGCATATTATTGATAGAAAGGGA 57.493 33.333 0.00 0.00 0.00 4.20
219 220 9.512588 ACTTGCATATTATTGATAGAAAGGGAG 57.487 33.333 0.00 0.00 0.00 4.30
220 221 7.928307 TGCATATTATTGATAGAAAGGGAGC 57.072 36.000 0.00 0.00 0.00 4.70
221 222 7.693132 TGCATATTATTGATAGAAAGGGAGCT 58.307 34.615 0.00 0.00 0.00 4.09
222 223 7.609146 TGCATATTATTGATAGAAAGGGAGCTG 59.391 37.037 0.00 0.00 0.00 4.24
223 224 7.826252 GCATATTATTGATAGAAAGGGAGCTGA 59.174 37.037 0.00 0.00 0.00 4.26
224 225 9.381033 CATATTATTGATAGAAAGGGAGCTGAG 57.619 37.037 0.00 0.00 0.00 3.35
225 226 7.623999 ATTATTGATAGAAAGGGAGCTGAGA 57.376 36.000 0.00 0.00 0.00 3.27
226 227 5.965033 ATTGATAGAAAGGGAGCTGAGAA 57.035 39.130 0.00 0.00 0.00 2.87
227 228 4.744795 TGATAGAAAGGGAGCTGAGAAC 57.255 45.455 0.00 0.00 0.00 3.01
228 229 3.452627 TGATAGAAAGGGAGCTGAGAACC 59.547 47.826 0.00 0.00 0.00 3.62
229 230 0.988063 AGAAAGGGAGCTGAGAACCC 59.012 55.000 0.00 0.00 43.55 4.11
230 231 0.034960 GAAAGGGAGCTGAGAACCCC 60.035 60.000 10.03 0.64 44.21 4.95
231 232 1.842381 AAAGGGAGCTGAGAACCCCG 61.842 60.000 10.03 0.00 44.21 5.73
232 233 3.003763 GGGAGCTGAGAACCCCGT 61.004 66.667 0.00 0.00 37.85 5.28
233 234 2.593956 GGGAGCTGAGAACCCCGTT 61.594 63.158 0.00 0.00 37.85 4.44
234 235 1.376037 GGAGCTGAGAACCCCGTTG 60.376 63.158 0.00 0.00 0.00 4.10
235 236 2.032681 AGCTGAGAACCCCGTTGC 59.967 61.111 0.00 0.00 0.00 4.17
236 237 2.281484 GCTGAGAACCCCGTTGCA 60.281 61.111 0.00 0.00 0.00 4.08
237 238 2.328099 GCTGAGAACCCCGTTGCAG 61.328 63.158 0.00 0.00 31.83 4.41
238 239 1.371183 CTGAGAACCCCGTTGCAGA 59.629 57.895 0.00 0.00 30.90 4.26
239 240 0.951040 CTGAGAACCCCGTTGCAGAC 60.951 60.000 0.00 0.00 30.90 3.51
240 241 1.070786 GAGAACCCCGTTGCAGACA 59.929 57.895 0.00 0.00 0.00 3.41
241 242 0.534203 GAGAACCCCGTTGCAGACAA 60.534 55.000 0.00 0.00 0.00 3.18
261 262 7.820044 GACAACTTGTCTAGGTTAGAGAATG 57.180 40.000 13.77 0.00 43.73 2.67
262 263 7.304497 ACAACTTGTCTAGGTTAGAGAATGT 57.696 36.000 0.00 0.00 37.43 2.71
263 264 7.736893 ACAACTTGTCTAGGTTAGAGAATGTT 58.263 34.615 0.00 2.41 37.43 2.71
264 265 7.873505 ACAACTTGTCTAGGTTAGAGAATGTTC 59.126 37.037 0.00 0.00 37.43 3.18
265 266 7.784470 ACTTGTCTAGGTTAGAGAATGTTCT 57.216 36.000 0.00 0.00 37.43 3.01
266 267 8.196378 ACTTGTCTAGGTTAGAGAATGTTCTT 57.804 34.615 0.00 0.00 37.43 2.52
267 268 8.091449 ACTTGTCTAGGTTAGAGAATGTTCTTG 58.909 37.037 0.00 0.00 37.43 3.02
268 269 7.776618 TGTCTAGGTTAGAGAATGTTCTTGA 57.223 36.000 0.00 0.00 37.73 3.02
269 270 8.367660 TGTCTAGGTTAGAGAATGTTCTTGAT 57.632 34.615 0.00 0.00 37.73 2.57
270 271 8.253810 TGTCTAGGTTAGAGAATGTTCTTGATG 58.746 37.037 0.00 0.00 37.73 3.07
271 272 8.470805 GTCTAGGTTAGAGAATGTTCTTGATGA 58.529 37.037 0.00 0.00 37.73 2.92
272 273 8.470805 TCTAGGTTAGAGAATGTTCTTGATGAC 58.529 37.037 0.00 0.00 37.73 3.06
273 274 6.410540 AGGTTAGAGAATGTTCTTGATGACC 58.589 40.000 0.00 3.84 37.73 4.02
274 275 5.586643 GGTTAGAGAATGTTCTTGATGACCC 59.413 44.000 0.00 0.00 37.73 4.46
275 276 4.916041 AGAGAATGTTCTTGATGACCCA 57.084 40.909 0.00 0.00 37.73 4.51
276 277 4.583871 AGAGAATGTTCTTGATGACCCAC 58.416 43.478 0.00 0.00 37.73 4.61
277 278 4.288105 AGAGAATGTTCTTGATGACCCACT 59.712 41.667 0.00 0.00 37.73 4.00
278 279 4.330250 AGAATGTTCTTGATGACCCACTG 58.670 43.478 0.00 0.00 32.55 3.66
279 280 1.896220 TGTTCTTGATGACCCACTGC 58.104 50.000 0.00 0.00 0.00 4.40
280 281 1.168714 GTTCTTGATGACCCACTGCC 58.831 55.000 0.00 0.00 0.00 4.85
281 282 1.067295 TTCTTGATGACCCACTGCCT 58.933 50.000 0.00 0.00 0.00 4.75
282 283 1.951209 TCTTGATGACCCACTGCCTA 58.049 50.000 0.00 0.00 0.00 3.93
283 284 2.481441 TCTTGATGACCCACTGCCTAT 58.519 47.619 0.00 0.00 0.00 2.57
284 285 2.846206 TCTTGATGACCCACTGCCTATT 59.154 45.455 0.00 0.00 0.00 1.73
285 286 4.037222 TCTTGATGACCCACTGCCTATTA 58.963 43.478 0.00 0.00 0.00 0.98
286 287 4.473196 TCTTGATGACCCACTGCCTATTAA 59.527 41.667 0.00 0.00 0.00 1.40
287 288 5.132648 TCTTGATGACCCACTGCCTATTAAT 59.867 40.000 0.00 0.00 0.00 1.40
288 289 4.717877 TGATGACCCACTGCCTATTAATG 58.282 43.478 0.00 0.00 0.00 1.90
289 290 4.411869 TGATGACCCACTGCCTATTAATGA 59.588 41.667 0.00 0.00 0.00 2.57
290 291 5.073554 TGATGACCCACTGCCTATTAATGAT 59.926 40.000 0.00 0.00 0.00 2.45
291 292 6.272090 TGATGACCCACTGCCTATTAATGATA 59.728 38.462 0.00 0.00 0.00 2.15
292 293 6.114187 TGACCCACTGCCTATTAATGATAG 57.886 41.667 0.00 0.00 37.96 2.08
293 294 5.606749 TGACCCACTGCCTATTAATGATAGT 59.393 40.000 0.00 0.00 36.74 2.12
294 295 6.101150 TGACCCACTGCCTATTAATGATAGTT 59.899 38.462 0.00 0.00 36.74 2.24
295 296 6.911308 ACCCACTGCCTATTAATGATAGTTT 58.089 36.000 0.00 0.00 36.74 2.66
296 297 7.354312 ACCCACTGCCTATTAATGATAGTTTT 58.646 34.615 0.00 0.00 36.74 2.43
297 298 7.502561 ACCCACTGCCTATTAATGATAGTTTTC 59.497 37.037 0.00 0.00 36.74 2.29
298 299 7.040409 CCCACTGCCTATTAATGATAGTTTTCC 60.040 40.741 0.00 0.00 36.74 3.13
299 300 7.721399 CCACTGCCTATTAATGATAGTTTTCCT 59.279 37.037 0.00 0.00 36.74 3.36
300 301 8.562892 CACTGCCTATTAATGATAGTTTTCCTG 58.437 37.037 0.00 0.00 36.74 3.86
301 302 8.494433 ACTGCCTATTAATGATAGTTTTCCTGA 58.506 33.333 0.00 0.00 36.74 3.86
302 303 9.512588 CTGCCTATTAATGATAGTTTTCCTGAT 57.487 33.333 0.00 0.00 36.74 2.90
303 304 9.288576 TGCCTATTAATGATAGTTTTCCTGATG 57.711 33.333 0.00 0.00 36.74 3.07
304 305 9.507329 GCCTATTAATGATAGTTTTCCTGATGA 57.493 33.333 0.00 0.00 36.74 2.92
313 314 8.677300 TGATAGTTTTCCTGATGAACAATTAGC 58.323 33.333 0.00 0.00 31.05 3.09
314 315 5.942872 AGTTTTCCTGATGAACAATTAGCG 58.057 37.500 0.00 0.00 31.05 4.26
315 316 4.963276 TTTCCTGATGAACAATTAGCGG 57.037 40.909 0.00 0.00 31.05 5.52
316 317 3.627395 TCCTGATGAACAATTAGCGGT 57.373 42.857 0.00 0.00 0.00 5.68
317 318 3.950397 TCCTGATGAACAATTAGCGGTT 58.050 40.909 0.00 0.00 0.00 4.44
318 319 3.689161 TCCTGATGAACAATTAGCGGTTG 59.311 43.478 0.00 0.00 0.00 3.77
319 320 3.440173 CCTGATGAACAATTAGCGGTTGT 59.560 43.478 0.00 0.00 41.28 3.32
320 321 4.437390 CCTGATGAACAATTAGCGGTTGTC 60.437 45.833 0.00 1.68 38.76 3.18
321 322 4.068599 TGATGAACAATTAGCGGTTGTCA 58.931 39.130 0.00 5.98 38.76 3.58
322 323 4.517075 TGATGAACAATTAGCGGTTGTCAA 59.483 37.500 0.00 0.00 38.76 3.18
323 324 5.182950 TGATGAACAATTAGCGGTTGTCAAT 59.817 36.000 0.00 3.21 38.76 2.57
324 325 4.793071 TGAACAATTAGCGGTTGTCAATG 58.207 39.130 0.00 0.00 38.76 2.82
325 326 3.216147 ACAATTAGCGGTTGTCAATGC 57.784 42.857 0.00 4.97 34.93 3.56
326 327 2.819608 ACAATTAGCGGTTGTCAATGCT 59.180 40.909 16.49 16.49 34.93 3.79
327 328 3.255642 ACAATTAGCGGTTGTCAATGCTT 59.744 39.130 17.21 2.06 34.93 3.91
328 329 3.764885 ATTAGCGGTTGTCAATGCTTC 57.235 42.857 17.21 0.00 38.82 3.86
329 330 2.472695 TAGCGGTTGTCAATGCTTCT 57.527 45.000 17.21 2.15 38.82 2.85
330 331 1.160137 AGCGGTTGTCAATGCTTCTC 58.840 50.000 8.91 0.00 32.89 2.87
331 332 0.179215 GCGGTTGTCAATGCTTCTCG 60.179 55.000 5.72 0.00 0.00 4.04
332 333 1.148310 CGGTTGTCAATGCTTCTCGT 58.852 50.000 0.00 0.00 0.00 4.18
333 334 2.333926 CGGTTGTCAATGCTTCTCGTA 58.666 47.619 0.00 0.00 0.00 3.43
334 335 2.092211 CGGTTGTCAATGCTTCTCGTAC 59.908 50.000 0.00 0.00 0.00 3.67
335 336 3.326747 GGTTGTCAATGCTTCTCGTACT 58.673 45.455 0.00 0.00 0.00 2.73
336 337 3.123621 GGTTGTCAATGCTTCTCGTACTG 59.876 47.826 0.00 0.00 0.00 2.74
337 338 2.337583 TGTCAATGCTTCTCGTACTGC 58.662 47.619 0.00 0.00 0.00 4.40
338 339 2.029020 TGTCAATGCTTCTCGTACTGCT 60.029 45.455 0.00 0.00 0.00 4.24
339 340 2.600867 GTCAATGCTTCTCGTACTGCTC 59.399 50.000 0.00 0.00 0.00 4.26
340 341 1.929836 CAATGCTTCTCGTACTGCTCC 59.070 52.381 0.00 0.00 0.00 4.70
341 342 1.479709 ATGCTTCTCGTACTGCTCCT 58.520 50.000 0.00 0.00 0.00 3.69
342 343 1.257743 TGCTTCTCGTACTGCTCCTT 58.742 50.000 0.00 0.00 0.00 3.36
343 344 1.067565 TGCTTCTCGTACTGCTCCTTG 60.068 52.381 0.00 0.00 0.00 3.61
344 345 1.737363 GCTTCTCGTACTGCTCCTTGG 60.737 57.143 0.00 0.00 0.00 3.61
345 346 1.546476 CTTCTCGTACTGCTCCTTGGT 59.454 52.381 0.00 0.00 0.00 3.67
346 347 2.502142 TCTCGTACTGCTCCTTGGTA 57.498 50.000 0.00 0.00 0.00 3.25
347 348 3.014304 TCTCGTACTGCTCCTTGGTAT 57.986 47.619 0.00 0.00 0.00 2.73
348 349 2.688446 TCTCGTACTGCTCCTTGGTATG 59.312 50.000 0.00 0.00 0.00 2.39
349 350 1.136305 TCGTACTGCTCCTTGGTATGC 59.864 52.381 0.00 0.00 0.00 3.14
350 351 1.137086 CGTACTGCTCCTTGGTATGCT 59.863 52.381 0.00 0.00 0.00 3.79
351 352 2.555199 GTACTGCTCCTTGGTATGCTG 58.445 52.381 0.00 0.00 0.00 4.41
352 353 1.279496 ACTGCTCCTTGGTATGCTGA 58.721 50.000 0.00 0.00 0.00 4.26
353 354 1.065854 ACTGCTCCTTGGTATGCTGAC 60.066 52.381 0.00 0.00 0.00 3.51
354 355 1.209019 CTGCTCCTTGGTATGCTGACT 59.791 52.381 0.00 0.00 0.00 3.41
355 356 2.432146 CTGCTCCTTGGTATGCTGACTA 59.568 50.000 0.00 0.00 0.00 2.59
356 357 3.041211 TGCTCCTTGGTATGCTGACTAT 58.959 45.455 0.00 0.00 0.00 2.12
357 358 3.181462 TGCTCCTTGGTATGCTGACTATG 60.181 47.826 0.00 0.00 0.00 2.23
358 359 3.397482 CTCCTTGGTATGCTGACTATGC 58.603 50.000 0.00 0.00 0.00 3.14
359 360 3.041211 TCCTTGGTATGCTGACTATGCT 58.959 45.455 0.00 0.00 0.00 3.79
458 459 4.412796 AGTAGCGAGGGGTATAAAAACC 57.587 45.455 0.00 0.00 38.94 3.27
573 574 4.202441 AGTAGCGAGGAGTATAAAACCGA 58.798 43.478 0.00 0.00 0.00 4.69
612 613 3.002038 AGTAGTAGCGCAGGTAAGACT 57.998 47.619 11.47 3.42 44.25 3.24
725 726 3.233355 CCCCCGTCTGTCTCAAAAG 57.767 57.895 0.00 0.00 0.00 2.27
1060 1070 4.133373 ATTGCTCCATGGCGGCCT 62.133 61.111 21.46 2.61 34.52 5.19
1098 1108 4.057428 GAGGCGTCGCACTCCAGT 62.057 66.667 20.50 0.00 0.00 4.00
1182 1192 3.036429 GCCCATGCTCTTCCTCCGT 62.036 63.158 0.00 0.00 33.53 4.69
1397 1431 2.736719 CGGAGATGCTTCTTCATGTCGT 60.737 50.000 8.53 0.00 37.55 4.34
1512 1546 0.249868 TCGACACTGTCTTTGCCTGG 60.250 55.000 7.58 0.00 0.00 4.45
1587 1621 0.457851 GACAGCTCAGATACGTGGCT 59.542 55.000 0.00 0.00 0.00 4.75
1673 1707 0.476611 AAGTTCCCCAGGGAGAAGCT 60.477 55.000 7.25 6.54 46.06 3.74
1675 1709 1.151810 TTCCCCAGGGAGAAGCTGT 60.152 57.895 7.25 0.00 46.06 4.40
1676 1710 1.201429 TTCCCCAGGGAGAAGCTGTC 61.201 60.000 7.25 0.00 46.06 3.51
1892 1934 3.005539 GGTGCTCTCCTGGAGGCA 61.006 66.667 26.04 26.04 42.08 4.75
1914 1956 4.816984 GGCCTCATGCTGCAGCCT 62.817 66.667 34.64 23.69 40.57 4.58
1915 1957 2.191375 GCCTCATGCTGCAGCCTA 59.809 61.111 34.64 18.92 41.18 3.93
1941 2015 2.141517 CAGCTCAGGTCTGTGTCAAAG 58.858 52.381 0.00 0.00 0.00 2.77
1946 2020 4.083590 GCTCAGGTCTGTGTCAAAGAAATC 60.084 45.833 0.00 0.00 0.00 2.17
2051 2131 7.556275 GTGGATCTGATTATTTAACCTGGTTGA 59.444 37.037 22.04 11.37 0.00 3.18
2192 2274 1.004758 TGCCTCCCCCTCTGCTTAT 59.995 57.895 0.00 0.00 0.00 1.73
2194 2276 1.348775 GCCTCCCCCTCTGCTTATGT 61.349 60.000 0.00 0.00 0.00 2.29
2199 2281 1.284785 CCCCCTCTGCTTATGTTTCCA 59.715 52.381 0.00 0.00 0.00 3.53
2249 2331 4.244862 GTTGATCCGCCATGTTTTTCATT 58.755 39.130 0.00 0.00 34.09 2.57
2423 2525 5.369833 TCACTTTTTGGACGAGTAATTCCA 58.630 37.500 0.00 0.00 0.00 3.53
2640 2745 1.399089 GTAAATACGTGGCGGCATTGT 59.601 47.619 17.19 19.25 0.00 2.71
2645 2750 2.616330 CGTGGCGGCATTGTGTCTT 61.616 57.895 17.19 0.00 0.00 3.01
2818 2927 3.181456 GCTAGATCTCTTGGCAGGAATGT 60.181 47.826 0.00 0.00 0.00 2.71
2851 2961 2.500098 CCCTTCGGACATTTCTGTAGGA 59.500 50.000 13.44 0.00 44.81 2.94
3163 3273 9.698309 ATATATAGTCCGAGTTTCATTGAGTTG 57.302 33.333 0.00 0.00 0.00 3.16
3167 3277 5.357032 AGTCCGAGTTTCATTGAGTTGTTTT 59.643 36.000 0.00 0.00 0.00 2.43
3246 3357 1.140312 CTAATAGGGCCCTTCCAGCA 58.860 55.000 34.04 11.80 36.21 4.41
3413 3524 3.217626 GGACTCAGGGCAATGGATAAAG 58.782 50.000 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.659183 AGCATAATTTCTCTGGGCAGT 57.341 42.857 0.00 0.00 0.00 4.40
2 3 3.201930 TGGTAGCATAATTTCTCTGGGCA 59.798 43.478 0.00 0.00 0.00 5.36
7 8 8.635765 TTTTTCAGTGGTAGCATAATTTCTCT 57.364 30.769 0.00 0.00 0.00 3.10
9 10 8.635765 TCTTTTTCAGTGGTAGCATAATTTCT 57.364 30.769 0.00 0.00 0.00 2.52
10 11 9.860898 ATTCTTTTTCAGTGGTAGCATAATTTC 57.139 29.630 0.00 0.00 0.00 2.17
12 13 9.860898 GAATTCTTTTTCAGTGGTAGCATAATT 57.139 29.630 0.00 0.00 0.00 1.40
13 14 9.247861 AGAATTCTTTTTCAGTGGTAGCATAAT 57.752 29.630 0.88 0.00 0.00 1.28
14 15 8.635765 AGAATTCTTTTTCAGTGGTAGCATAA 57.364 30.769 0.88 0.00 0.00 1.90
15 16 8.635765 AAGAATTCTTTTTCAGTGGTAGCATA 57.364 30.769 15.11 0.00 30.82 3.14
16 17 7.530426 AAGAATTCTTTTTCAGTGGTAGCAT 57.470 32.000 15.11 0.00 30.82 3.79
17 18 6.959639 AAGAATTCTTTTTCAGTGGTAGCA 57.040 33.333 15.11 0.00 30.82 3.49
18 19 7.024171 GCTAAGAATTCTTTTTCAGTGGTAGC 58.976 38.462 25.02 18.39 37.40 3.58
19 20 8.099364 TGCTAAGAATTCTTTTTCAGTGGTAG 57.901 34.615 25.02 13.18 37.40 3.18
20 21 7.719633 ACTGCTAAGAATTCTTTTTCAGTGGTA 59.280 33.333 28.94 11.79 37.28 3.25
21 22 6.547510 ACTGCTAAGAATTCTTTTTCAGTGGT 59.452 34.615 28.94 19.19 37.28 4.16
22 23 6.974965 ACTGCTAAGAATTCTTTTTCAGTGG 58.025 36.000 28.94 18.78 37.28 4.00
23 24 7.917505 ACAACTGCTAAGAATTCTTTTTCAGTG 59.082 33.333 29.54 25.81 37.94 3.66
24 25 7.917505 CACAACTGCTAAGAATTCTTTTTCAGT 59.082 33.333 26.60 26.60 38.70 3.41
25 26 7.917505 ACACAACTGCTAAGAATTCTTTTTCAG 59.082 33.333 25.02 25.51 37.40 3.02
26 27 7.771183 ACACAACTGCTAAGAATTCTTTTTCA 58.229 30.769 25.02 17.69 37.40 2.69
27 28 8.634475 AACACAACTGCTAAGAATTCTTTTTC 57.366 30.769 25.02 14.51 37.40 2.29
28 29 8.872845 CAAACACAACTGCTAAGAATTCTTTTT 58.127 29.630 25.02 12.45 37.40 1.94
29 30 7.010460 GCAAACACAACTGCTAAGAATTCTTTT 59.990 33.333 25.02 10.72 37.40 2.27
30 31 6.476706 GCAAACACAACTGCTAAGAATTCTTT 59.523 34.615 25.02 10.16 37.40 2.52
31 32 5.979517 GCAAACACAACTGCTAAGAATTCTT 59.020 36.000 23.53 23.53 39.85 2.52
32 33 5.067674 TGCAAACACAACTGCTAAGAATTCT 59.932 36.000 0.88 0.88 39.38 2.40
33 34 5.280945 TGCAAACACAACTGCTAAGAATTC 58.719 37.500 0.00 0.00 39.38 2.17
34 35 5.261209 TGCAAACACAACTGCTAAGAATT 57.739 34.783 0.00 0.00 39.38 2.17
35 36 4.916983 TGCAAACACAACTGCTAAGAAT 57.083 36.364 0.00 0.00 39.38 2.40
36 37 4.097741 ACATGCAAACACAACTGCTAAGAA 59.902 37.500 0.00 0.00 39.38 2.52
37 38 3.631686 ACATGCAAACACAACTGCTAAGA 59.368 39.130 0.00 0.00 39.38 2.10
38 39 3.732219 CACATGCAAACACAACTGCTAAG 59.268 43.478 0.00 0.00 39.38 2.18
39 40 3.379688 TCACATGCAAACACAACTGCTAA 59.620 39.130 0.00 0.00 39.38 3.09
40 41 2.948315 TCACATGCAAACACAACTGCTA 59.052 40.909 0.00 0.00 39.38 3.49
41 42 1.750206 TCACATGCAAACACAACTGCT 59.250 42.857 0.00 0.00 39.38 4.24
42 43 2.206815 TCACATGCAAACACAACTGC 57.793 45.000 0.00 0.00 39.09 4.40
43 44 5.522456 ACTTATCACATGCAAACACAACTG 58.478 37.500 0.00 0.00 0.00 3.16
44 45 5.772825 ACTTATCACATGCAAACACAACT 57.227 34.783 0.00 0.00 0.00 3.16
45 46 6.826893 AAACTTATCACATGCAAACACAAC 57.173 33.333 0.00 0.00 0.00 3.32
46 47 7.935520 TCTAAACTTATCACATGCAAACACAA 58.064 30.769 0.00 0.00 0.00 3.33
47 48 7.503521 TCTAAACTTATCACATGCAAACACA 57.496 32.000 0.00 0.00 0.00 3.72
48 49 8.454106 AGATCTAAACTTATCACATGCAAACAC 58.546 33.333 0.00 0.00 0.00 3.32
49 50 8.565896 AGATCTAAACTTATCACATGCAAACA 57.434 30.769 0.00 0.00 0.00 2.83
79 80 9.126151 TGTGAATAGTAACTTTGGAATCAACAA 57.874 29.630 0.00 0.00 31.78 2.83
80 81 8.564574 GTGTGAATAGTAACTTTGGAATCAACA 58.435 33.333 0.00 0.00 31.78 3.33
81 82 8.784043 AGTGTGAATAGTAACTTTGGAATCAAC 58.216 33.333 0.00 0.00 31.78 3.18
82 83 8.783093 CAGTGTGAATAGTAACTTTGGAATCAA 58.217 33.333 0.00 0.00 0.00 2.57
83 84 8.154203 TCAGTGTGAATAGTAACTTTGGAATCA 58.846 33.333 0.00 0.00 0.00 2.57
84 85 8.547967 TCAGTGTGAATAGTAACTTTGGAATC 57.452 34.615 0.00 0.00 0.00 2.52
85 86 9.167311 GATCAGTGTGAATAGTAACTTTGGAAT 57.833 33.333 0.00 0.00 0.00 3.01
86 87 8.154203 TGATCAGTGTGAATAGTAACTTTGGAA 58.846 33.333 0.00 0.00 0.00 3.53
87 88 7.676004 TGATCAGTGTGAATAGTAACTTTGGA 58.324 34.615 0.00 0.00 0.00 3.53
88 89 7.905604 TGATCAGTGTGAATAGTAACTTTGG 57.094 36.000 0.00 0.00 0.00 3.28
89 90 7.907045 GCATGATCAGTGTGAATAGTAACTTTG 59.093 37.037 0.09 0.00 0.00 2.77
90 91 7.826252 AGCATGATCAGTGTGAATAGTAACTTT 59.174 33.333 0.09 0.00 0.00 2.66
91 92 7.279536 CAGCATGATCAGTGTGAATAGTAACTT 59.720 37.037 0.09 0.00 39.69 2.66
92 93 6.760298 CAGCATGATCAGTGTGAATAGTAACT 59.240 38.462 0.09 0.00 39.69 2.24
93 94 6.510799 GCAGCATGATCAGTGTGAATAGTAAC 60.511 42.308 0.09 0.00 39.69 2.50
94 95 5.525012 GCAGCATGATCAGTGTGAATAGTAA 59.475 40.000 0.09 0.00 39.69 2.24
95 96 5.052481 GCAGCATGATCAGTGTGAATAGTA 58.948 41.667 0.09 0.00 39.69 1.82
96 97 3.875727 GCAGCATGATCAGTGTGAATAGT 59.124 43.478 0.09 0.00 39.69 2.12
97 98 4.127907 AGCAGCATGATCAGTGTGAATAG 58.872 43.478 0.09 0.00 39.69 1.73
98 99 4.146745 AGCAGCATGATCAGTGTGAATA 57.853 40.909 0.09 0.00 39.69 1.75
99 100 3.000684 AGCAGCATGATCAGTGTGAAT 57.999 42.857 0.09 0.00 39.69 2.57
100 101 2.484742 AGCAGCATGATCAGTGTGAA 57.515 45.000 0.09 0.00 39.69 3.18
101 102 3.832615 ATAGCAGCATGATCAGTGTGA 57.167 42.857 0.09 0.00 39.69 3.58
102 103 5.996669 TTAATAGCAGCATGATCAGTGTG 57.003 39.130 0.09 0.00 39.69 3.82
103 104 8.859236 ATATTTAATAGCAGCATGATCAGTGT 57.141 30.769 0.09 0.00 39.69 3.55
104 105 9.163899 AGATATTTAATAGCAGCATGATCAGTG 57.836 33.333 0.09 0.00 39.69 3.66
105 106 9.736414 AAGATATTTAATAGCAGCATGATCAGT 57.264 29.630 0.09 0.00 39.69 3.41
127 128 8.628280 GCTTAGCATCTTTCTTTTCCATAAGAT 58.372 33.333 0.00 0.00 37.72 2.40
128 129 7.067494 GGCTTAGCATCTTTCTTTTCCATAAGA 59.933 37.037 6.53 0.00 32.50 2.10
129 130 7.067981 AGGCTTAGCATCTTTCTTTTCCATAAG 59.932 37.037 6.53 0.00 0.00 1.73
130 131 6.891908 AGGCTTAGCATCTTTCTTTTCCATAA 59.108 34.615 6.53 0.00 0.00 1.90
131 132 6.426587 AGGCTTAGCATCTTTCTTTTCCATA 58.573 36.000 6.53 0.00 0.00 2.74
132 133 5.267587 AGGCTTAGCATCTTTCTTTTCCAT 58.732 37.500 6.53 0.00 0.00 3.41
133 134 4.666512 AGGCTTAGCATCTTTCTTTTCCA 58.333 39.130 6.53 0.00 0.00 3.53
134 135 6.037720 GTCTAGGCTTAGCATCTTTCTTTTCC 59.962 42.308 6.53 0.00 0.00 3.13
135 136 6.821160 AGTCTAGGCTTAGCATCTTTCTTTTC 59.179 38.462 6.53 0.00 0.00 2.29
136 137 6.716284 AGTCTAGGCTTAGCATCTTTCTTTT 58.284 36.000 6.53 0.00 0.00 2.27
137 138 6.070538 TGAGTCTAGGCTTAGCATCTTTCTTT 60.071 38.462 6.53 0.00 0.00 2.52
138 139 5.423610 TGAGTCTAGGCTTAGCATCTTTCTT 59.576 40.000 6.53 0.00 0.00 2.52
139 140 4.959210 TGAGTCTAGGCTTAGCATCTTTCT 59.041 41.667 6.53 0.00 0.00 2.52
140 141 5.269505 TGAGTCTAGGCTTAGCATCTTTC 57.730 43.478 6.53 0.00 0.00 2.62
141 142 5.885449 ATGAGTCTAGGCTTAGCATCTTT 57.115 39.130 6.53 0.00 0.00 2.52
142 143 5.885449 AATGAGTCTAGGCTTAGCATCTT 57.115 39.130 6.53 0.00 0.00 2.40
143 144 6.310941 TCTAATGAGTCTAGGCTTAGCATCT 58.689 40.000 6.53 0.00 0.00 2.90
144 145 6.582677 TCTAATGAGTCTAGGCTTAGCATC 57.417 41.667 6.53 0.00 0.00 3.91
145 146 6.070881 CCATCTAATGAGTCTAGGCTTAGCAT 60.071 42.308 6.53 0.18 0.00 3.79
146 147 5.244851 CCATCTAATGAGTCTAGGCTTAGCA 59.755 44.000 6.53 0.00 0.00 3.49
147 148 5.337169 CCCATCTAATGAGTCTAGGCTTAGC 60.337 48.000 0.00 0.00 0.00 3.09
148 149 5.777732 ACCCATCTAATGAGTCTAGGCTTAG 59.222 44.000 0.00 0.00 0.00 2.18
149 150 5.716979 ACCCATCTAATGAGTCTAGGCTTA 58.283 41.667 0.00 0.00 0.00 3.09
150 151 4.561752 ACCCATCTAATGAGTCTAGGCTT 58.438 43.478 0.00 0.00 0.00 4.35
151 152 4.206244 ACCCATCTAATGAGTCTAGGCT 57.794 45.455 0.00 0.00 0.00 4.58
152 153 4.591072 AGAACCCATCTAATGAGTCTAGGC 59.409 45.833 0.00 0.00 36.32 3.93
153 154 6.074648 AGAGAACCCATCTAATGAGTCTAGG 58.925 44.000 0.00 0.00 38.96 3.02
154 155 7.432869 CAAGAGAACCCATCTAATGAGTCTAG 58.567 42.308 0.00 0.00 38.96 2.43
155 156 6.183360 GCAAGAGAACCCATCTAATGAGTCTA 60.183 42.308 0.00 0.00 38.96 2.59
156 157 5.396213 GCAAGAGAACCCATCTAATGAGTCT 60.396 44.000 0.00 0.00 38.96 3.24
157 158 4.813697 GCAAGAGAACCCATCTAATGAGTC 59.186 45.833 0.00 0.00 38.96 3.36
158 159 4.472833 AGCAAGAGAACCCATCTAATGAGT 59.527 41.667 0.00 0.00 38.96 3.41
159 160 5.033589 AGCAAGAGAACCCATCTAATGAG 57.966 43.478 0.00 0.00 38.96 2.90
160 161 4.141620 GGAGCAAGAGAACCCATCTAATGA 60.142 45.833 0.00 0.00 38.96 2.57
161 162 4.133078 GGAGCAAGAGAACCCATCTAATG 58.867 47.826 0.00 0.00 38.96 1.90
162 163 3.782523 TGGAGCAAGAGAACCCATCTAAT 59.217 43.478 0.00 0.00 38.96 1.73
163 164 3.181329 TGGAGCAAGAGAACCCATCTAA 58.819 45.455 0.00 0.00 38.96 2.10
164 165 2.832838 TGGAGCAAGAGAACCCATCTA 58.167 47.619 0.00 0.00 38.96 1.98
165 166 1.661463 TGGAGCAAGAGAACCCATCT 58.339 50.000 0.00 0.00 42.61 2.90
166 167 2.026822 TCTTGGAGCAAGAGAACCCATC 60.027 50.000 0.00 0.00 44.27 3.51
167 168 1.988107 TCTTGGAGCAAGAGAACCCAT 59.012 47.619 0.00 0.00 44.27 4.00
168 169 1.434188 TCTTGGAGCAAGAGAACCCA 58.566 50.000 0.00 0.00 44.27 4.51
175 176 4.261741 GCAAGTCAAATTCTTGGAGCAAGA 60.262 41.667 7.31 0.00 46.93 3.02
176 177 3.985925 GCAAGTCAAATTCTTGGAGCAAG 59.014 43.478 7.31 0.00 42.25 4.01
177 178 3.384146 TGCAAGTCAAATTCTTGGAGCAA 59.616 39.130 7.31 0.00 41.50 3.91
178 179 2.957680 TGCAAGTCAAATTCTTGGAGCA 59.042 40.909 7.31 0.00 41.50 4.26
179 180 3.648339 TGCAAGTCAAATTCTTGGAGC 57.352 42.857 7.31 0.00 41.50 4.70
181 182 9.806203 CAATAATATGCAAGTCAAATTCTTGGA 57.194 29.630 7.31 5.12 44.50 3.53
182 183 9.806203 TCAATAATATGCAAGTCAAATTCTTGG 57.194 29.630 7.31 0.00 41.50 3.61
191 192 9.288576 CCCTTTCTATCAATAATATGCAAGTCA 57.711 33.333 0.00 0.00 0.00 3.41
192 193 9.507329 TCCCTTTCTATCAATAATATGCAAGTC 57.493 33.333 0.00 0.00 0.00 3.01
193 194 9.512588 CTCCCTTTCTATCAATAATATGCAAGT 57.487 33.333 0.00 0.00 0.00 3.16
194 195 8.457261 GCTCCCTTTCTATCAATAATATGCAAG 58.543 37.037 0.00 0.00 0.00 4.01
195 196 8.166061 AGCTCCCTTTCTATCAATAATATGCAA 58.834 33.333 0.00 0.00 0.00 4.08
196 197 7.609146 CAGCTCCCTTTCTATCAATAATATGCA 59.391 37.037 0.00 0.00 0.00 3.96
197 198 7.826252 TCAGCTCCCTTTCTATCAATAATATGC 59.174 37.037 0.00 0.00 0.00 3.14
198 199 9.381033 CTCAGCTCCCTTTCTATCAATAATATG 57.619 37.037 0.00 0.00 0.00 1.78
199 200 9.331466 TCTCAGCTCCCTTTCTATCAATAATAT 57.669 33.333 0.00 0.00 0.00 1.28
200 201 8.727100 TCTCAGCTCCCTTTCTATCAATAATA 57.273 34.615 0.00 0.00 0.00 0.98
201 202 7.623999 TCTCAGCTCCCTTTCTATCAATAAT 57.376 36.000 0.00 0.00 0.00 1.28
202 203 7.275920 GTTCTCAGCTCCCTTTCTATCAATAA 58.724 38.462 0.00 0.00 0.00 1.40
203 204 6.183361 GGTTCTCAGCTCCCTTTCTATCAATA 60.183 42.308 0.00 0.00 0.00 1.90
204 205 5.397334 GGTTCTCAGCTCCCTTTCTATCAAT 60.397 44.000 0.00 0.00 0.00 2.57
205 206 4.080863 GGTTCTCAGCTCCCTTTCTATCAA 60.081 45.833 0.00 0.00 0.00 2.57
206 207 3.452627 GGTTCTCAGCTCCCTTTCTATCA 59.547 47.826 0.00 0.00 0.00 2.15
207 208 3.181459 GGGTTCTCAGCTCCCTTTCTATC 60.181 52.174 0.05 0.00 38.29 2.08
208 209 2.774809 GGGTTCTCAGCTCCCTTTCTAT 59.225 50.000 0.05 0.00 38.29 1.98
209 210 2.188817 GGGTTCTCAGCTCCCTTTCTA 58.811 52.381 0.05 0.00 38.29 2.10
210 211 0.988063 GGGTTCTCAGCTCCCTTTCT 59.012 55.000 0.05 0.00 38.29 2.52
211 212 0.034960 GGGGTTCTCAGCTCCCTTTC 60.035 60.000 7.33 0.00 40.88 2.62
212 213 1.842381 CGGGGTTCTCAGCTCCCTTT 61.842 60.000 7.33 0.00 40.88 3.11
213 214 2.294078 CGGGGTTCTCAGCTCCCTT 61.294 63.158 7.33 0.00 40.88 3.95
214 215 2.685380 CGGGGTTCTCAGCTCCCT 60.685 66.667 7.33 0.00 40.88 4.20
215 216 2.593956 AACGGGGTTCTCAGCTCCC 61.594 63.158 0.00 0.00 40.41 4.30
216 217 1.376037 CAACGGGGTTCTCAGCTCC 60.376 63.158 0.00 0.00 0.00 4.70
217 218 2.035442 GCAACGGGGTTCTCAGCTC 61.035 63.158 0.00 0.00 0.00 4.09
218 219 2.032681 GCAACGGGGTTCTCAGCT 59.967 61.111 0.00 0.00 0.00 4.24
219 220 2.281484 TGCAACGGGGTTCTCAGC 60.281 61.111 0.00 0.00 0.00 4.26
220 221 0.951040 GTCTGCAACGGGGTTCTCAG 60.951 60.000 0.00 0.00 0.00 3.35
221 222 1.070786 GTCTGCAACGGGGTTCTCA 59.929 57.895 0.00 0.00 0.00 3.27
222 223 0.534203 TTGTCTGCAACGGGGTTCTC 60.534 55.000 0.00 0.00 0.00 2.87
223 224 0.818040 GTTGTCTGCAACGGGGTTCT 60.818 55.000 0.00 0.00 44.40 3.01
224 225 1.652563 GTTGTCTGCAACGGGGTTC 59.347 57.895 0.00 0.00 44.40 3.62
225 226 3.836151 GTTGTCTGCAACGGGGTT 58.164 55.556 0.00 0.00 44.40 4.11
238 239 7.304497 ACATTCTCTAACCTAGACAAGTTGT 57.696 36.000 8.61 8.61 0.00 3.32
239 240 8.091449 AGAACATTCTCTAACCTAGACAAGTTG 58.909 37.037 0.00 0.00 29.94 3.16
240 241 8.196378 AGAACATTCTCTAACCTAGACAAGTT 57.804 34.615 0.00 0.00 29.94 2.66
241 242 7.784470 AGAACATTCTCTAACCTAGACAAGT 57.216 36.000 0.00 0.00 29.94 3.16
242 243 8.307483 TCAAGAACATTCTCTAACCTAGACAAG 58.693 37.037 0.00 0.00 36.28 3.16
243 244 8.190326 TCAAGAACATTCTCTAACCTAGACAA 57.810 34.615 0.00 0.00 36.28 3.18
244 245 7.776618 TCAAGAACATTCTCTAACCTAGACA 57.223 36.000 0.00 0.00 36.28 3.41
245 246 8.470805 TCATCAAGAACATTCTCTAACCTAGAC 58.529 37.037 0.00 0.00 36.28 2.59
246 247 8.470805 GTCATCAAGAACATTCTCTAACCTAGA 58.529 37.037 0.00 0.00 36.28 2.43
247 248 7.708752 GGTCATCAAGAACATTCTCTAACCTAG 59.291 40.741 0.00 0.00 36.28 3.02
248 249 7.364762 GGGTCATCAAGAACATTCTCTAACCTA 60.365 40.741 0.00 0.00 36.28 3.08
249 250 6.410540 GGTCATCAAGAACATTCTCTAACCT 58.589 40.000 0.00 0.00 36.28 3.50
250 251 5.586643 GGGTCATCAAGAACATTCTCTAACC 59.413 44.000 0.00 0.13 36.28 2.85
251 252 6.092807 GTGGGTCATCAAGAACATTCTCTAAC 59.907 42.308 0.00 0.00 36.28 2.34
252 253 6.013379 AGTGGGTCATCAAGAACATTCTCTAA 60.013 38.462 0.00 0.00 36.28 2.10
253 254 5.485353 AGTGGGTCATCAAGAACATTCTCTA 59.515 40.000 0.00 0.00 36.28 2.43
254 255 4.288105 AGTGGGTCATCAAGAACATTCTCT 59.712 41.667 0.00 0.00 36.28 3.10
255 256 4.394300 CAGTGGGTCATCAAGAACATTCTC 59.606 45.833 0.00 0.00 36.28 2.87
256 257 4.330250 CAGTGGGTCATCAAGAACATTCT 58.670 43.478 0.00 0.00 39.74 2.40
257 258 3.119708 GCAGTGGGTCATCAAGAACATTC 60.120 47.826 0.00 0.00 34.85 2.67
258 259 2.821969 GCAGTGGGTCATCAAGAACATT 59.178 45.455 0.00 0.00 34.85 2.71
259 260 2.440409 GCAGTGGGTCATCAAGAACAT 58.560 47.619 0.00 0.00 34.85 2.71
260 261 1.545428 GGCAGTGGGTCATCAAGAACA 60.545 52.381 0.00 0.00 34.85 3.18
261 262 1.168714 GGCAGTGGGTCATCAAGAAC 58.831 55.000 0.00 0.00 0.00 3.01
262 263 1.067295 AGGCAGTGGGTCATCAAGAA 58.933 50.000 0.00 0.00 0.00 2.52
263 264 1.951209 TAGGCAGTGGGTCATCAAGA 58.049 50.000 0.00 0.00 0.00 3.02
264 265 3.287867 AATAGGCAGTGGGTCATCAAG 57.712 47.619 0.00 0.00 0.00 3.02
265 266 4.853468 TTAATAGGCAGTGGGTCATCAA 57.147 40.909 0.00 0.00 0.00 2.57
266 267 4.411869 TCATTAATAGGCAGTGGGTCATCA 59.588 41.667 0.00 0.00 0.00 3.07
267 268 4.973168 TCATTAATAGGCAGTGGGTCATC 58.027 43.478 0.00 0.00 0.00 2.92
268 269 5.589367 ATCATTAATAGGCAGTGGGTCAT 57.411 39.130 0.00 0.00 0.00 3.06
269 270 5.606749 ACTATCATTAATAGGCAGTGGGTCA 59.393 40.000 0.00 0.00 41.56 4.02
270 271 6.115448 ACTATCATTAATAGGCAGTGGGTC 57.885 41.667 0.00 0.00 41.56 4.46
271 272 6.515512 AACTATCATTAATAGGCAGTGGGT 57.484 37.500 0.00 0.00 41.56 4.51
272 273 7.040409 GGAAAACTATCATTAATAGGCAGTGGG 60.040 40.741 0.00 0.00 41.56 4.61
273 274 7.721399 AGGAAAACTATCATTAATAGGCAGTGG 59.279 37.037 0.00 0.00 41.56 4.00
274 275 8.562892 CAGGAAAACTATCATTAATAGGCAGTG 58.437 37.037 0.00 0.00 41.56 3.66
275 276 8.494433 TCAGGAAAACTATCATTAATAGGCAGT 58.506 33.333 0.00 0.00 41.56 4.40
276 277 8.908786 TCAGGAAAACTATCATTAATAGGCAG 57.091 34.615 0.00 0.00 41.56 4.85
277 278 9.288576 CATCAGGAAAACTATCATTAATAGGCA 57.711 33.333 0.00 0.00 41.56 4.75
278 279 9.507329 TCATCAGGAAAACTATCATTAATAGGC 57.493 33.333 0.00 0.00 41.56 3.93
287 288 8.677300 GCTAATTGTTCATCAGGAAAACTATCA 58.323 33.333 0.00 0.00 37.23 2.15
288 289 7.852945 CGCTAATTGTTCATCAGGAAAACTATC 59.147 37.037 0.00 0.00 37.23 2.08
289 290 7.201732 CCGCTAATTGTTCATCAGGAAAACTAT 60.202 37.037 0.00 0.00 37.23 2.12
290 291 6.093495 CCGCTAATTGTTCATCAGGAAAACTA 59.907 38.462 0.00 0.00 37.23 2.24
291 292 5.106157 CCGCTAATTGTTCATCAGGAAAACT 60.106 40.000 0.00 0.00 37.23 2.66
292 293 5.095490 CCGCTAATTGTTCATCAGGAAAAC 58.905 41.667 0.00 0.00 37.23 2.43
293 294 4.764823 ACCGCTAATTGTTCATCAGGAAAA 59.235 37.500 0.00 0.00 37.23 2.29
294 295 4.331968 ACCGCTAATTGTTCATCAGGAAA 58.668 39.130 0.00 0.00 37.23 3.13
295 296 3.950397 ACCGCTAATTGTTCATCAGGAA 58.050 40.909 0.00 0.00 0.00 3.36
296 297 3.627395 ACCGCTAATTGTTCATCAGGA 57.373 42.857 0.00 0.00 0.00 3.86
297 298 3.440173 ACAACCGCTAATTGTTCATCAGG 59.560 43.478 0.00 0.00 36.93 3.86
298 299 4.154015 TGACAACCGCTAATTGTTCATCAG 59.846 41.667 0.00 0.00 40.36 2.90
299 300 4.068599 TGACAACCGCTAATTGTTCATCA 58.931 39.130 0.00 0.00 40.36 3.07
300 301 4.678509 TGACAACCGCTAATTGTTCATC 57.321 40.909 0.00 0.00 40.36 2.92
301 302 5.401550 CATTGACAACCGCTAATTGTTCAT 58.598 37.500 0.00 0.00 40.36 2.57
302 303 4.793071 CATTGACAACCGCTAATTGTTCA 58.207 39.130 0.00 0.00 40.36 3.18
303 304 3.608073 GCATTGACAACCGCTAATTGTTC 59.392 43.478 4.54 0.00 40.36 3.18
304 305 3.255642 AGCATTGACAACCGCTAATTGTT 59.744 39.130 11.30 0.00 40.36 2.83
305 306 2.819608 AGCATTGACAACCGCTAATTGT 59.180 40.909 11.30 0.00 42.95 2.71
306 307 3.492421 AGCATTGACAACCGCTAATTG 57.508 42.857 11.30 0.00 31.60 2.32
307 308 3.758554 AGAAGCATTGACAACCGCTAATT 59.241 39.130 12.92 0.32 33.45 1.40
308 309 3.347216 AGAAGCATTGACAACCGCTAAT 58.653 40.909 12.92 4.17 33.45 1.73
309 310 2.742053 GAGAAGCATTGACAACCGCTAA 59.258 45.455 12.92 0.00 33.45 3.09
310 311 2.346803 GAGAAGCATTGACAACCGCTA 58.653 47.619 12.92 0.00 33.45 4.26
311 312 1.160137 GAGAAGCATTGACAACCGCT 58.840 50.000 7.89 7.89 35.90 5.52
312 313 0.179215 CGAGAAGCATTGACAACCGC 60.179 55.000 3.71 3.71 0.00 5.68
313 314 1.148310 ACGAGAAGCATTGACAACCG 58.852 50.000 0.00 0.00 0.00 4.44
314 315 3.123621 CAGTACGAGAAGCATTGACAACC 59.876 47.826 0.00 0.00 0.00 3.77
315 316 3.423645 GCAGTACGAGAAGCATTGACAAC 60.424 47.826 0.00 0.00 0.00 3.32
316 317 2.736721 GCAGTACGAGAAGCATTGACAA 59.263 45.455 0.00 0.00 0.00 3.18
317 318 2.029020 AGCAGTACGAGAAGCATTGACA 60.029 45.455 0.00 0.00 0.00 3.58
318 319 2.600867 GAGCAGTACGAGAAGCATTGAC 59.399 50.000 0.00 0.00 0.00 3.18
319 320 2.417379 GGAGCAGTACGAGAAGCATTGA 60.417 50.000 0.00 0.00 0.00 2.57
320 321 1.929836 GGAGCAGTACGAGAAGCATTG 59.070 52.381 0.00 0.00 0.00 2.82
321 322 1.827969 AGGAGCAGTACGAGAAGCATT 59.172 47.619 0.00 0.00 0.00 3.56
322 323 1.479709 AGGAGCAGTACGAGAAGCAT 58.520 50.000 0.00 0.00 0.00 3.79
323 324 1.067565 CAAGGAGCAGTACGAGAAGCA 60.068 52.381 0.00 0.00 0.00 3.91
324 325 1.634702 CAAGGAGCAGTACGAGAAGC 58.365 55.000 0.00 0.00 0.00 3.86
325 326 1.546476 ACCAAGGAGCAGTACGAGAAG 59.454 52.381 0.00 0.00 0.00 2.85
326 327 1.629043 ACCAAGGAGCAGTACGAGAA 58.371 50.000 0.00 0.00 0.00 2.87
327 328 2.502142 TACCAAGGAGCAGTACGAGA 57.498 50.000 0.00 0.00 0.00 4.04
328 329 2.799917 GCATACCAAGGAGCAGTACGAG 60.800 54.545 0.00 0.00 0.00 4.18
329 330 1.136305 GCATACCAAGGAGCAGTACGA 59.864 52.381 0.00 0.00 0.00 3.43
330 331 1.137086 AGCATACCAAGGAGCAGTACG 59.863 52.381 0.00 0.00 0.00 3.67
331 332 2.168521 TCAGCATACCAAGGAGCAGTAC 59.831 50.000 0.00 0.00 0.00 2.73
332 333 2.168521 GTCAGCATACCAAGGAGCAGTA 59.831 50.000 0.00 0.00 0.00 2.74
333 334 1.065854 GTCAGCATACCAAGGAGCAGT 60.066 52.381 0.00 0.00 0.00 4.40
334 335 1.209019 AGTCAGCATACCAAGGAGCAG 59.791 52.381 0.00 0.00 0.00 4.24
335 336 1.279496 AGTCAGCATACCAAGGAGCA 58.721 50.000 0.00 0.00 0.00 4.26
336 337 3.397482 CATAGTCAGCATACCAAGGAGC 58.603 50.000 0.00 0.00 0.00 4.70
337 338 3.070734 AGCATAGTCAGCATACCAAGGAG 59.929 47.826 0.00 0.00 0.00 3.69
338 339 3.041211 AGCATAGTCAGCATACCAAGGA 58.959 45.455 0.00 0.00 0.00 3.36
339 340 3.482156 AGCATAGTCAGCATACCAAGG 57.518 47.619 0.00 0.00 0.00 3.61
340 341 5.235186 GTGTTAGCATAGTCAGCATACCAAG 59.765 44.000 0.00 0.00 0.00 3.61
341 342 5.104941 AGTGTTAGCATAGTCAGCATACCAA 60.105 40.000 0.00 0.00 0.00 3.67
342 343 4.405680 AGTGTTAGCATAGTCAGCATACCA 59.594 41.667 0.00 0.00 0.00 3.25
343 344 4.950050 AGTGTTAGCATAGTCAGCATACC 58.050 43.478 0.00 0.00 0.00 2.73
344 345 6.740110 AGTAGTGTTAGCATAGTCAGCATAC 58.260 40.000 0.00 0.00 0.00 2.39
345 346 6.961360 AGTAGTGTTAGCATAGTCAGCATA 57.039 37.500 0.00 0.00 0.00 3.14
346 347 5.860941 AGTAGTGTTAGCATAGTCAGCAT 57.139 39.130 0.00 0.00 0.00 3.79
347 348 5.299531 CCTAGTAGTGTTAGCATAGTCAGCA 59.700 44.000 0.00 0.00 0.00 4.41
348 349 5.278561 CCCTAGTAGTGTTAGCATAGTCAGC 60.279 48.000 0.00 0.00 0.00 4.26
349 350 6.062749 TCCCTAGTAGTGTTAGCATAGTCAG 58.937 44.000 0.00 0.00 0.00 3.51
350 351 6.009908 TCCCTAGTAGTGTTAGCATAGTCA 57.990 41.667 0.00 0.00 0.00 3.41
351 352 6.956202 TTCCCTAGTAGTGTTAGCATAGTC 57.044 41.667 0.00 0.00 0.00 2.59
352 353 7.364497 GGTTTTCCCTAGTAGTGTTAGCATAGT 60.364 40.741 0.00 0.00 0.00 2.12
353 354 6.985059 GGTTTTCCCTAGTAGTGTTAGCATAG 59.015 42.308 0.00 0.00 0.00 2.23
354 355 6.670902 AGGTTTTCCCTAGTAGTGTTAGCATA 59.329 38.462 0.00 0.00 43.87 3.14
355 356 5.487845 AGGTTTTCCCTAGTAGTGTTAGCAT 59.512 40.000 0.00 0.00 43.87 3.79
356 357 4.842380 AGGTTTTCCCTAGTAGTGTTAGCA 59.158 41.667 0.00 0.00 43.87 3.49
357 358 5.417754 AGGTTTTCCCTAGTAGTGTTAGC 57.582 43.478 0.00 0.00 43.87 3.09
359 360 9.545928 TGTATAAGGTTTTCCCTAGTAGTGTTA 57.454 33.333 0.00 0.00 45.47 2.41
386 387 5.505173 ACCGCGCTACTAATAAACTTCTA 57.495 39.130 5.56 0.00 0.00 2.10
397 398 3.374678 CCCATTTTTAAACCGCGCTACTA 59.625 43.478 5.56 0.00 0.00 1.82
458 459 5.093169 ACTATCAACTTAGTAGTAGCGCG 57.907 43.478 0.00 0.00 33.17 6.86
545 546 9.442047 GGTTTTATACTCCTCGCTACTACTATA 57.558 37.037 0.00 0.00 0.00 1.31
644 645 2.121832 TGGGAGTGTGGATCGGGT 59.878 61.111 0.00 0.00 0.00 5.28
725 726 1.862602 ATCGGGCTGCGTGGTTTTTC 61.863 55.000 0.00 0.00 0.00 2.29
1138 1148 4.988598 CACCAGGAACAGCGGCGT 62.989 66.667 9.37 0.00 0.00 5.68
1168 1178 0.247736 GTGTCACGGAGGAAGAGCAT 59.752 55.000 0.00 0.00 0.00 3.79
1182 1192 1.371758 GAAGAGCAGCGTCGTGTCA 60.372 57.895 0.00 0.00 0.00 3.58
1397 1431 1.075601 AAGGGGTTGAGGCAGATCAA 58.924 50.000 0.00 0.00 36.85 2.57
1673 1707 1.544691 GACCTTGTAGGAGAAGCGACA 59.455 52.381 0.00 0.00 37.67 4.35
1675 1709 1.819288 CTGACCTTGTAGGAGAAGCGA 59.181 52.381 0.00 0.00 37.67 4.93
1676 1710 1.737363 GCTGACCTTGTAGGAGAAGCG 60.737 57.143 0.00 0.00 37.67 4.68
1834 1876 2.354729 CCTGTCCGGCCATTGGAA 59.645 61.111 6.95 0.00 37.23 3.53
1914 1956 1.625315 ACAGACCTGAGCTGCATTGTA 59.375 47.619 1.02 0.00 36.86 2.41
1915 1957 0.399454 ACAGACCTGAGCTGCATTGT 59.601 50.000 1.02 0.00 36.86 2.71
2051 2131 5.336213 GCTGTCCATCACAAAAAGATCATGT 60.336 40.000 0.00 0.00 33.31 3.21
2174 2256 1.004758 ATAAGCAGAGGGGGAGGCA 59.995 57.895 0.00 0.00 0.00 4.75
2194 2276 1.899814 AGCTACTGACCGACATGGAAA 59.100 47.619 0.00 0.00 42.00 3.13
2199 2281 0.824759 GGGAAGCTACTGACCGACAT 59.175 55.000 0.00 0.00 0.00 3.06
2249 2331 5.574891 AAGTTGTGCAATGTACTTCAACA 57.425 34.783 13.08 2.20 37.97 3.33
2423 2525 5.209659 AGTTACGATCTACTCCCTCCATTT 58.790 41.667 0.00 0.00 0.00 2.32
2465 2567 0.330604 ATCTCCCAAGCTGCACACAT 59.669 50.000 1.02 0.00 0.00 3.21
2513 2615 1.451504 CACTCTCAACACCAGCCCA 59.548 57.895 0.00 0.00 0.00 5.36
2554 2656 3.645660 TGGAGAACCATGGCCGCA 61.646 61.111 13.04 0.00 41.77 5.69
2640 2745 7.241042 ACTATACTTGCCTTTGTCTAAGACA 57.759 36.000 0.00 0.00 41.09 3.41
2645 2750 6.504398 CATCGACTATACTTGCCTTTGTCTA 58.496 40.000 0.00 0.00 0.00 2.59
2657 2762 7.993101 TGTACAAAACTAGCATCGACTATACT 58.007 34.615 0.00 0.00 0.00 2.12
2818 2927 1.987855 CGAAGGGGCAGGAGTGGTA 60.988 63.158 0.00 0.00 0.00 3.25
2851 2961 9.382275 AGAAAACACTAACATTCAAGCAAAAAT 57.618 25.926 0.00 0.00 0.00 1.82
3088 3198 8.571336 GCTTAGGAATGCAGTGTATAAATCATT 58.429 33.333 0.00 0.00 0.00 2.57
3089 3199 7.941238 AGCTTAGGAATGCAGTGTATAAATCAT 59.059 33.333 0.00 0.00 0.00 2.45
3218 3328 3.531059 AGGGCCCTATTAGATATGCACA 58.469 45.455 27.42 0.00 0.00 4.57
3246 3357 9.955102 AAAGATATTCGGTTAAACTTAGGTCTT 57.045 29.630 0.00 0.00 0.00 3.01
3288 3399 7.181125 AGTTAAATACATGGGGCATAAAAACCA 59.819 33.333 0.00 0.00 37.41 3.67
3455 3566 2.107204 ACCCTTTGTGCATCTCTTCACT 59.893 45.455 0.00 0.00 34.49 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.