Multiple sequence alignment - TraesCS4A01G442500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G442500 chr4A 100.000 3647 0 0 1 3647 710414928 710411282 0.000000e+00 6735
1 TraesCS4A01G442500 chr4A 80.808 396 68 7 2280 2673 708914123 708913734 1.650000e-78 303
2 TraesCS4A01G442500 chr4A 80.808 396 68 7 2280 2673 708915546 708915157 1.650000e-78 303
3 TraesCS4A01G442500 chr4A 97.778 90 1 1 3559 3647 686728931 686728842 1.750000e-33 154
4 TraesCS4A01G442500 chr4A 96.703 91 2 1 3558 3647 731061953 731061863 2.270000e-32 150
5 TraesCS4A01G442500 chr7A 91.185 2541 142 32 240 2734 26840739 26838235 0.000000e+00 3376
6 TraesCS4A01G442500 chr7A 79.310 1044 173 28 1016 2052 25006451 25007458 0.000000e+00 691
7 TraesCS4A01G442500 chr7A 84.734 714 65 11 2859 3558 26837715 26837032 0.000000e+00 675
8 TraesCS4A01G442500 chr7A 80.755 556 91 13 1469 2023 24627346 24627886 1.570000e-113 420
9 TraesCS4A01G442500 chr7A 79.613 569 93 16 1469 2035 24539519 24538972 1.590000e-103 387
10 TraesCS4A01G442500 chr7A 81.108 397 65 8 2280 2673 25007652 25008041 3.540000e-80 309
11 TraesCS4A01G442500 chr7D 93.452 1237 72 6 931 2162 26003700 26002468 0.000000e+00 1827
12 TraesCS4A01G442500 chr7D 91.517 613 28 6 2154 2743 26002291 26001680 0.000000e+00 822
13 TraesCS4A01G442500 chr7D 87.589 419 49 2 3143 3558 25950382 25949964 1.970000e-132 483
14 TraesCS4A01G442500 chr7D 76.028 997 200 25 1033 2023 23509796 23510759 7.080000e-132 481
15 TraesCS4A01G442500 chr7D 85.480 427 30 17 223 639 26004110 26003706 2.030000e-112 416
16 TraesCS4A01G442500 chr7D 85.246 427 31 15 223 639 26058642 26058238 9.430000e-111 411
17 TraesCS4A01G442500 chr1B 79.887 1059 165 31 1016 2057 558495653 558496680 0.000000e+00 732
18 TraesCS4A01G442500 chr1B 77.602 1076 185 37 1016 2072 558284463 558285501 5.210000e-168 601
19 TraesCS4A01G442500 chr1B 87.391 230 27 2 2389 2617 558497011 558497239 2.790000e-66 263
20 TraesCS4A01G442500 chr1B 83.333 264 41 2 2387 2650 558285600 558285860 1.310000e-59 241
21 TraesCS4A01G442500 chr1B 96.703 91 2 1 3558 3647 482884554 482884644 2.270000e-32 150
22 TraesCS4A01G442500 chr1D 77.924 1137 187 42 1523 2617 413778604 413779718 0.000000e+00 651
23 TraesCS4A01G442500 chr1D 84.932 365 53 2 1694 2057 413731059 413731422 5.750000e-98 368
24 TraesCS4A01G442500 chr1A 79.011 748 118 28 1316 2056 510672788 510673503 3.300000e-130 475
25 TraesCS4A01G442500 chr1A 77.358 477 95 9 2149 2617 510804337 510804808 1.670000e-68 270
26 TraesCS4A01G442500 chr1A 80.665 331 52 9 2324 2650 510673558 510673880 2.810000e-61 246
27 TraesCS4A01G442500 chr7B 97.778 90 1 1 3559 3647 679913254 679913343 1.750000e-33 154
28 TraesCS4A01G442500 chr3B 97.778 90 1 1 3559 3647 89311391 89311480 1.750000e-33 154
29 TraesCS4A01G442500 chr3B 95.789 95 2 2 3554 3647 811450541 811450634 6.310000e-33 152
30 TraesCS4A01G442500 chr5B 96.739 92 2 1 3557 3647 548667193 548667102 6.310000e-33 152
31 TraesCS4A01G442500 chr6B 96.703 91 2 1 3558 3647 18589012 18588922 2.270000e-32 150
32 TraesCS4A01G442500 chr4B 96.703 91 2 1 3558 3647 669218906 669218996 2.270000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G442500 chr4A 710411282 710414928 3646 True 6735.000000 6735 100.000000 1 3647 1 chr4A.!!$R2 3646
1 TraesCS4A01G442500 chr4A 708913734 708915546 1812 True 303.000000 303 80.808000 2280 2673 2 chr4A.!!$R4 393
2 TraesCS4A01G442500 chr7A 26837032 26840739 3707 True 2025.500000 3376 87.959500 240 3558 2 chr7A.!!$R2 3318
3 TraesCS4A01G442500 chr7A 25006451 25008041 1590 False 500.000000 691 80.209000 1016 2673 2 chr7A.!!$F2 1657
4 TraesCS4A01G442500 chr7A 24627346 24627886 540 False 420.000000 420 80.755000 1469 2023 1 chr7A.!!$F1 554
5 TraesCS4A01G442500 chr7A 24538972 24539519 547 True 387.000000 387 79.613000 1469 2035 1 chr7A.!!$R1 566
6 TraesCS4A01G442500 chr7D 26001680 26004110 2430 True 1021.666667 1827 90.149667 223 2743 3 chr7D.!!$R3 2520
7 TraesCS4A01G442500 chr7D 23509796 23510759 963 False 481.000000 481 76.028000 1033 2023 1 chr7D.!!$F1 990
8 TraesCS4A01G442500 chr1B 558495653 558497239 1586 False 497.500000 732 83.639000 1016 2617 2 chr1B.!!$F3 1601
9 TraesCS4A01G442500 chr1B 558284463 558285860 1397 False 421.000000 601 80.467500 1016 2650 2 chr1B.!!$F2 1634
10 TraesCS4A01G442500 chr1D 413778604 413779718 1114 False 651.000000 651 77.924000 1523 2617 1 chr1D.!!$F2 1094
11 TraesCS4A01G442500 chr1A 510672788 510673880 1092 False 360.500000 475 79.838000 1316 2650 2 chr1A.!!$F2 1334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.247814 CCGTTCATGTTGCATCGCTC 60.248 55.0 0.00 0.0 0.0 5.03 F
1252 1287 0.037975 TTTCGGCTACAGTCGGTTCC 60.038 55.0 3.07 0.0 44.3 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 1652 0.607489 AAGACATGGCAGTGTGAGGC 60.607 55.0 0.00 0.00 31.16 4.70 R
3118 3805 0.392998 AAACAGAGGCGATCGGCAAT 60.393 50.0 38.28 25.35 46.16 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.631160 AACGTGATCACCAACTTCCA 57.369 45.000 20.03 0.00 0.00 3.53
21 22 3.140325 ACGTGATCACCAACTTCCATT 57.860 42.857 20.03 0.00 0.00 3.16
22 23 3.486383 ACGTGATCACCAACTTCCATTT 58.514 40.909 20.03 0.00 0.00 2.32
24 25 5.067273 ACGTGATCACCAACTTCCATTTAA 58.933 37.500 20.03 0.00 0.00 1.52
25 26 5.710099 ACGTGATCACCAACTTCCATTTAAT 59.290 36.000 20.03 0.00 0.00 1.40
26 27 6.882140 ACGTGATCACCAACTTCCATTTAATA 59.118 34.615 20.03 0.00 0.00 0.98
27 28 7.065803 ACGTGATCACCAACTTCCATTTAATAG 59.934 37.037 20.03 2.07 0.00 1.73
28 29 7.065803 CGTGATCACCAACTTCCATTTAATAGT 59.934 37.037 20.03 0.00 0.00 2.12
29 30 9.391006 GTGATCACCAACTTCCATTTAATAGTA 57.609 33.333 15.31 0.00 0.00 1.82
30 31 9.613428 TGATCACCAACTTCCATTTAATAGTAG 57.387 33.333 0.00 0.00 0.00 2.57
31 32 9.832445 GATCACCAACTTCCATTTAATAGTAGA 57.168 33.333 0.00 0.00 0.00 2.59
32 33 9.838339 ATCACCAACTTCCATTTAATAGTAGAG 57.162 33.333 0.00 0.00 0.00 2.43
33 34 9.042450 TCACCAACTTCCATTTAATAGTAGAGA 57.958 33.333 0.00 0.00 0.00 3.10
34 35 9.838339 CACCAACTTCCATTTAATAGTAGAGAT 57.162 33.333 0.00 0.00 0.00 2.75
51 52 8.290463 AGTAGAGATATAGGTTTAGGACTCCA 57.710 38.462 0.00 0.00 0.00 3.86
52 53 8.734763 AGTAGAGATATAGGTTTAGGACTCCAA 58.265 37.037 0.00 0.00 0.00 3.53
53 54 9.536510 GTAGAGATATAGGTTTAGGACTCCAAT 57.463 37.037 0.00 0.00 0.00 3.16
62 63 8.849543 AGGTTTAGGACTCCAATAATACTACA 57.150 34.615 0.00 0.00 0.00 2.74
63 64 8.702819 AGGTTTAGGACTCCAATAATACTACAC 58.297 37.037 0.00 0.00 0.00 2.90
64 65 8.702819 GGTTTAGGACTCCAATAATACTACACT 58.297 37.037 0.00 0.00 0.00 3.55
65 66 9.747293 GTTTAGGACTCCAATAATACTACACTC 57.253 37.037 0.00 0.00 0.00 3.51
66 67 9.483489 TTTAGGACTCCAATAATACTACACTCA 57.517 33.333 0.00 0.00 0.00 3.41
67 68 7.349412 AGGACTCCAATAATACTACACTCAC 57.651 40.000 0.00 0.00 0.00 3.51
69 70 8.280084 AGGACTCCAATAATACTACACTCACTA 58.720 37.037 0.00 0.00 0.00 2.74
70 71 8.569641 GGACTCCAATAATACTACACTCACTAG 58.430 40.741 0.00 0.00 0.00 2.57
72 73 7.780745 ACTCCAATAATACTACACTCACTAGCT 59.219 37.037 0.00 0.00 0.00 3.32
73 74 8.534954 TCCAATAATACTACACTCACTAGCTT 57.465 34.615 0.00 0.00 0.00 3.74
74 75 8.630917 TCCAATAATACTACACTCACTAGCTTC 58.369 37.037 0.00 0.00 0.00 3.86
75 76 8.634444 CCAATAATACTACACTCACTAGCTTCT 58.366 37.037 0.00 0.00 0.00 2.85
79 80 8.577048 AATACTACACTCACTAGCTTCTTACA 57.423 34.615 0.00 0.00 0.00 2.41
80 81 8.754991 ATACTACACTCACTAGCTTCTTACAT 57.245 34.615 0.00 0.00 0.00 2.29
81 82 9.848710 ATACTACACTCACTAGCTTCTTACATA 57.151 33.333 0.00 0.00 0.00 2.29
83 84 9.191479 ACTACACTCACTAGCTTCTTACATAAT 57.809 33.333 0.00 0.00 0.00 1.28
103 104 9.905713 ACATAATATTCTTTGCTAAACTCTCCA 57.094 29.630 0.00 0.00 0.00 3.86
105 106 9.905713 ATAATATTCTTTGCTAAACTCTCCACA 57.094 29.630 0.00 0.00 0.00 4.17
106 107 7.856145 ATATTCTTTGCTAAACTCTCCACAG 57.144 36.000 0.00 0.00 0.00 3.66
107 108 3.403038 TCTTTGCTAAACTCTCCACAGC 58.597 45.455 0.00 0.00 0.00 4.40
108 109 2.185004 TTGCTAAACTCTCCACAGCC 57.815 50.000 0.00 0.00 0.00 4.85
109 110 0.324943 TGCTAAACTCTCCACAGCCC 59.675 55.000 0.00 0.00 0.00 5.19
110 111 0.393132 GCTAAACTCTCCACAGCCCC 60.393 60.000 0.00 0.00 0.00 5.80
113 114 0.768221 AAACTCTCCACAGCCCCTGA 60.768 55.000 0.00 0.00 35.18 3.86
114 115 0.768221 AACTCTCCACAGCCCCTGAA 60.768 55.000 0.00 0.00 35.18 3.02
115 116 0.548682 ACTCTCCACAGCCCCTGAAT 60.549 55.000 0.00 0.00 35.18 2.57
116 117 0.622665 CTCTCCACAGCCCCTGAATT 59.377 55.000 0.00 0.00 35.18 2.17
117 118 1.005215 CTCTCCACAGCCCCTGAATTT 59.995 52.381 0.00 0.00 35.18 1.82
121 122 0.529378 CACAGCCCCTGAATTTCAGC 59.471 55.000 19.04 10.33 42.98 4.26
122 123 0.962356 ACAGCCCCTGAATTTCAGCG 60.962 55.000 19.04 11.75 42.98 5.18
123 124 1.379044 AGCCCCTGAATTTCAGCGG 60.379 57.895 21.05 21.05 43.56 5.52
124 125 1.678970 GCCCCTGAATTTCAGCGGT 60.679 57.895 24.27 0.00 42.86 5.68
125 126 1.937546 GCCCCTGAATTTCAGCGGTG 61.938 60.000 24.27 8.67 42.86 4.94
126 127 0.609131 CCCCTGAATTTCAGCGGTGT 60.609 55.000 19.04 0.00 42.98 4.16
127 128 0.523072 CCCTGAATTTCAGCGGTGTG 59.477 55.000 19.04 6.10 42.98 3.82
129 130 0.523072 CTGAATTTCAGCGGTGTGGG 59.477 55.000 15.22 0.00 37.72 4.61
130 131 1.212751 GAATTTCAGCGGTGTGGGC 59.787 57.895 15.22 0.00 0.00 5.36
131 132 2.212900 GAATTTCAGCGGTGTGGGCC 62.213 60.000 15.22 0.00 0.00 5.80
132 133 4.966787 TTTCAGCGGTGTGGGCCC 62.967 66.667 17.59 17.59 0.00 5.80
139 140 4.035102 GGTGTGGGCCCCTCACTC 62.035 72.222 32.06 23.18 44.47 3.51
141 142 1.612442 GTGTGGGCCCCTCACTCTA 60.612 63.158 28.82 5.11 42.57 2.43
143 144 0.253160 TGTGGGCCCCTCACTCTAAT 60.253 55.000 22.27 0.00 36.21 1.73
144 145 0.470341 GTGGGCCCCTCACTCTAATC 59.530 60.000 22.27 0.00 32.78 1.75
145 146 0.343372 TGGGCCCCTCACTCTAATCT 59.657 55.000 22.27 0.00 0.00 2.40
146 147 1.052617 GGGCCCCTCACTCTAATCTC 58.947 60.000 12.23 0.00 0.00 2.75
147 148 1.413808 GGGCCCCTCACTCTAATCTCT 60.414 57.143 12.23 0.00 0.00 3.10
148 149 2.403561 GGCCCCTCACTCTAATCTCTT 58.596 52.381 0.00 0.00 0.00 2.85
150 151 2.367241 GCCCCTCACTCTAATCTCTTCC 59.633 54.545 0.00 0.00 0.00 3.46
151 152 3.647636 CCCCTCACTCTAATCTCTTCCA 58.352 50.000 0.00 0.00 0.00 3.53
152 153 4.033709 CCCCTCACTCTAATCTCTTCCAA 58.966 47.826 0.00 0.00 0.00 3.53
153 154 4.657969 CCCCTCACTCTAATCTCTTCCAAT 59.342 45.833 0.00 0.00 0.00 3.16
154 155 5.841237 CCCCTCACTCTAATCTCTTCCAATA 59.159 44.000 0.00 0.00 0.00 1.90
156 157 7.441017 CCCTCACTCTAATCTCTTCCAATAAG 58.559 42.308 0.00 0.00 0.00 1.73
158 159 8.869109 CCTCACTCTAATCTCTTCCAATAAGAT 58.131 37.037 0.00 0.00 0.00 2.40
168 169 6.784969 TCTCTTCCAATAAGATTAGCCTAGCT 59.215 38.462 0.00 0.00 43.41 3.32
170 171 8.671987 TCTTCCAATAAGATTAGCCTAGCTAT 57.328 34.615 0.00 0.00 41.01 2.97
171 172 9.769677 TCTTCCAATAAGATTAGCCTAGCTATA 57.230 33.333 0.00 0.00 41.01 1.31
174 175 8.478877 TCCAATAAGATTAGCCTAGCTATAAGC 58.521 37.037 0.00 0.00 41.01 3.09
176 177 9.829507 CAATAAGATTAGCCTAGCTATAAGCAT 57.170 33.333 11.72 0.16 45.56 3.79
178 179 6.478512 AGATTAGCCTAGCTATAAGCATCC 57.521 41.667 11.72 1.06 45.56 3.51
179 180 5.365314 AGATTAGCCTAGCTATAAGCATCCC 59.635 44.000 11.72 1.32 45.56 3.85
180 181 3.197927 AGCCTAGCTATAAGCATCCCT 57.802 47.619 11.72 0.00 45.56 4.20
182 183 2.569404 GCCTAGCTATAAGCATCCCTGT 59.431 50.000 0.00 0.00 45.56 4.00
183 184 3.769844 GCCTAGCTATAAGCATCCCTGTA 59.230 47.826 0.00 0.00 45.56 2.74
185 186 5.280011 GCCTAGCTATAAGCATCCCTGTAAA 60.280 44.000 0.00 0.00 45.56 2.01
186 187 6.744339 GCCTAGCTATAAGCATCCCTGTAAAA 60.744 42.308 0.00 0.00 45.56 1.52
187 188 7.398024 CCTAGCTATAAGCATCCCTGTAAAAT 58.602 38.462 0.00 0.00 45.56 1.82
188 189 7.550906 CCTAGCTATAAGCATCCCTGTAAAATC 59.449 40.741 0.00 0.00 45.56 2.17
189 190 6.241645 AGCTATAAGCATCCCTGTAAAATCC 58.758 40.000 1.22 0.00 45.56 3.01
190 191 6.003950 GCTATAAGCATCCCTGTAAAATCCA 58.996 40.000 0.00 0.00 41.89 3.41
191 192 6.660949 GCTATAAGCATCCCTGTAAAATCCAT 59.339 38.462 0.00 0.00 41.89 3.41
193 194 9.739276 CTATAAGCATCCCTGTAAAATCCATAA 57.261 33.333 0.00 0.00 0.00 1.90
195 196 7.919385 AAGCATCCCTGTAAAATCCATAATT 57.081 32.000 0.00 0.00 0.00 1.40
197 198 9.605951 AAGCATCCCTGTAAAATCCATAATTAT 57.394 29.630 0.00 0.00 0.00 1.28
202 203 9.528489 TCCCTGTAAAATCCATAATTATAAGCC 57.472 33.333 0.00 0.00 0.00 4.35
203 204 8.749354 CCCTGTAAAATCCATAATTATAAGCCC 58.251 37.037 0.00 0.00 0.00 5.19
204 205 8.458843 CCTGTAAAATCCATAATTATAAGCCCG 58.541 37.037 0.00 0.00 0.00 6.13
206 207 9.357161 TGTAAAATCCATAATTATAAGCCCGTT 57.643 29.630 0.00 0.00 0.00 4.44
208 209 8.472007 AAAATCCATAATTATAAGCCCGTTCA 57.528 30.769 0.00 0.00 0.00 3.18
209 210 8.650143 AAATCCATAATTATAAGCCCGTTCAT 57.350 30.769 0.00 0.00 0.00 2.57
210 211 7.630242 ATCCATAATTATAAGCCCGTTCATG 57.370 36.000 0.00 0.00 0.00 3.07
211 212 6.539173 TCCATAATTATAAGCCCGTTCATGT 58.461 36.000 0.00 0.00 0.00 3.21
213 214 7.040755 TCCATAATTATAAGCCCGTTCATGTTG 60.041 37.037 0.00 0.00 0.00 3.33
214 215 4.568152 ATTATAAGCCCGTTCATGTTGC 57.432 40.909 0.00 0.00 0.00 4.17
218 219 1.226379 GCCCGTTCATGTTGCATCG 60.226 57.895 0.00 0.00 0.00 3.84
220 221 1.647545 CCCGTTCATGTTGCATCGCT 61.648 55.000 0.00 0.00 0.00 4.93
221 222 0.247814 CCGTTCATGTTGCATCGCTC 60.248 55.000 0.00 0.00 0.00 5.03
328 332 2.143419 GGACAGCCATCCCGATCCT 61.143 63.158 0.00 0.00 31.94 3.24
329 333 0.832135 GGACAGCCATCCCGATCCTA 60.832 60.000 0.00 0.00 31.94 2.94
330 334 1.270907 GACAGCCATCCCGATCCTAT 58.729 55.000 0.00 0.00 0.00 2.57
331 335 1.205893 GACAGCCATCCCGATCCTATC 59.794 57.143 0.00 0.00 0.00 2.08
332 336 0.539051 CAGCCATCCCGATCCTATCC 59.461 60.000 0.00 0.00 0.00 2.59
381 385 1.071299 AGCCAACGTGAGACATGCA 59.929 52.632 0.00 0.00 0.00 3.96
444 448 3.364366 GCACTTACACACTTTAGCTGCAG 60.364 47.826 10.11 10.11 0.00 4.41
460 464 8.703604 TTAGCTGCAGAAAATACTACTAGTTG 57.296 34.615 20.43 0.59 0.00 3.16
497 501 2.186826 GGCCCACGGAATTGATCGG 61.187 63.158 0.00 0.00 34.70 4.18
534 538 3.192844 TCACTCCAACTGATCGAAGGTAC 59.807 47.826 0.00 0.00 0.00 3.34
535 539 2.163815 ACTCCAACTGATCGAAGGTACG 59.836 50.000 0.00 0.00 0.00 3.67
574 578 7.523709 GCAATTCACCGTCCATAATTTCCATAT 60.524 37.037 0.00 0.00 0.00 1.78
605 615 5.180117 CCCATTTGTACTATGCATGAGCTAC 59.820 44.000 10.16 3.96 42.74 3.58
614 624 3.257469 TGCATGAGCTACCTGAGAAAG 57.743 47.619 0.00 0.00 42.74 2.62
629 639 5.884792 CCTGAGAAAGTCCATGAGCTTTAAT 59.115 40.000 12.31 6.64 35.35 1.40
679 689 0.810648 TGAATCGATGCAAAGGCCAC 59.189 50.000 2.71 0.00 40.13 5.01
721 731 5.004916 CGAAAAGTAAAACCGTGTGCAAAAT 59.995 36.000 0.00 0.00 0.00 1.82
722 732 6.454450 CGAAAAGTAAAACCGTGTGCAAAATT 60.454 34.615 0.00 0.00 0.00 1.82
723 733 5.710613 AAGTAAAACCGTGTGCAAAATTG 57.289 34.783 0.00 0.00 0.00 2.32
810 838 2.837591 TCTAGTGCAGCCTTATCACCAA 59.162 45.455 0.00 0.00 0.00 3.67
811 839 2.119801 AGTGCAGCCTTATCACCAAG 57.880 50.000 0.00 0.00 0.00 3.61
812 840 1.352352 AGTGCAGCCTTATCACCAAGT 59.648 47.619 0.00 0.00 0.00 3.16
813 841 2.571653 AGTGCAGCCTTATCACCAAGTA 59.428 45.455 0.00 0.00 0.00 2.24
913 945 6.538945 TTAGGAAAAATTTAGGGCATGTCC 57.461 37.500 8.79 8.79 0.00 4.02
1010 1044 3.157087 CAGGTGCACCTATGGAAAACTT 58.843 45.455 37.27 9.20 46.65 2.66
1024 1058 4.021544 TGGAAAACTTCTGTGTGCAAAAGT 60.022 37.500 0.00 0.00 33.53 2.66
1134 1168 1.280998 CCGGTCCCTGTTATCAACCTT 59.719 52.381 0.00 0.00 0.00 3.50
1222 1256 0.695803 CTGGGGCCTCTTCCTGGTAT 60.696 60.000 3.07 0.00 0.00 2.73
1234 1268 4.600111 TCTTCCTGGTATGTAACAACCCTT 59.400 41.667 0.00 0.00 34.69 3.95
1241 1275 3.706600 ATGTAACAACCCTTTCGGCTA 57.293 42.857 0.00 0.00 33.26 3.93
1252 1287 0.037975 TTTCGGCTACAGTCGGTTCC 60.038 55.000 3.07 0.00 44.30 3.62
1289 1326 4.681025 GCATTTTCGAGAATGAACAAGCAA 59.319 37.500 27.54 0.00 38.93 3.91
1297 1334 5.332883 CGAGAATGAACAAGCAAGGATATCG 60.333 44.000 0.00 0.00 0.00 2.92
1427 1470 0.803740 GAGAAGCAGAGGCAAAGCAG 59.196 55.000 0.00 0.00 44.61 4.24
1528 1571 1.472662 CCTGGACTGGACTGACCGTT 61.473 60.000 0.00 0.00 42.61 4.44
1530 1573 1.616865 CTGGACTGGACTGACCGTTTA 59.383 52.381 0.00 0.00 42.61 2.01
1606 1652 1.291877 CGAAAGCTTCAGGTGACCGG 61.292 60.000 0.00 0.00 0.00 5.28
1615 1677 3.626924 GGTGACCGGCCTCACACT 61.627 66.667 22.61 0.00 42.17 3.55
1671 1733 2.948315 GGAGGATTTGCTGAAGGATCAC 59.052 50.000 0.00 0.00 0.00 3.06
1689 1763 5.007626 GGATCACACGTGCATATATTGTTGT 59.992 40.000 17.22 0.00 0.00 3.32
1690 1764 6.201997 GGATCACACGTGCATATATTGTTGTA 59.798 38.462 17.22 0.00 0.00 2.41
1734 1809 2.158667 AGTTCACGAAGAAATGTGGGGT 60.159 45.455 0.00 0.00 38.13 4.95
1744 1819 3.852578 AGAAATGTGGGGTAGTGAAGGAT 59.147 43.478 0.00 0.00 0.00 3.24
1812 1887 1.461127 CTACTTCGTGAACCAGCTTGC 59.539 52.381 0.00 0.00 0.00 4.01
1915 1990 0.240945 CTGATGGAACCGTTGTTGCC 59.759 55.000 0.00 0.00 41.68 4.52
1916 1991 0.466372 TGATGGAACCGTTGTTGCCA 60.466 50.000 0.00 0.00 41.68 4.92
2131 2210 8.832521 TGCCAATGTAAATAGTTTTCGGTATAG 58.167 33.333 0.00 0.00 0.00 1.31
2168 2432 9.125026 CTGCACATATATTTAGGAAAAGAGGTT 57.875 33.333 0.00 0.00 0.00 3.50
2184 2448 5.656213 AGAGGTTGTACGTATAAACTGCT 57.344 39.130 24.99 17.87 0.00 4.24
2187 2451 3.063045 GGTTGTACGTATAAACTGCTGCC 59.937 47.826 12.36 1.98 0.00 4.85
2193 2457 3.700038 ACGTATAAACTGCTGCCTAGTCT 59.300 43.478 0.00 0.00 0.00 3.24
2199 2463 0.103208 CTGCTGCCTAGTCTTACCCG 59.897 60.000 0.00 0.00 0.00 5.28
2214 2478 4.712829 TCTTACCCGGTAAAGACATCATCA 59.287 41.667 11.24 0.00 0.00 3.07
2229 2493 5.288015 ACATCATCATTTGCGTTGTTCAAA 58.712 33.333 0.00 0.00 37.75 2.69
2232 2498 6.841443 TCATCATTTGCGTTGTTCAAATTT 57.159 29.167 0.00 0.00 40.86 1.82
2352 2622 6.545504 TTAAGATTATGAGCTTTCGCCATC 57.454 37.500 0.00 0.00 36.60 3.51
2568 2841 6.303839 ACCAGCCTTATACAGAAAAGTGAAA 58.696 36.000 0.00 0.00 0.00 2.69
2693 2986 6.424812 TCTTGCGACAGATATTTGTATCATGG 59.575 38.462 0.00 0.00 0.00 3.66
2695 2988 6.754193 TGCGACAGATATTTGTATCATGGTA 58.246 36.000 0.00 0.00 0.00 3.25
2696 2989 7.386059 TGCGACAGATATTTGTATCATGGTAT 58.614 34.615 0.00 0.00 0.00 2.73
2736 3078 8.642432 TGTGTATTTAATCCCATTGTTCAACAA 58.358 29.630 5.18 5.18 42.95 2.83
2743 3085 2.801679 CCCATTGTTCAACAACACATGC 59.198 45.455 4.73 0.00 42.46 4.06
2745 3087 4.261952 CCCATTGTTCAACAACACATGCTA 60.262 41.667 4.73 0.00 42.46 3.49
2746 3088 5.288015 CCATTGTTCAACAACACATGCTAA 58.712 37.500 4.73 0.00 42.46 3.09
2747 3089 5.927689 CCATTGTTCAACAACACATGCTAAT 59.072 36.000 4.73 0.00 42.46 1.73
2748 3090 7.089538 CCATTGTTCAACAACACATGCTAATA 58.910 34.615 4.73 0.00 42.46 0.98
2749 3091 7.598118 CCATTGTTCAACAACACATGCTAATAA 59.402 33.333 4.73 0.00 42.46 1.40
2808 3179 7.667575 TTAATAAAATTAGCATTGGCCCTCA 57.332 32.000 0.00 0.00 42.56 3.86
2837 3208 3.240069 GAGTGCAACATCTTTCATGTGC 58.760 45.455 0.00 0.00 41.43 4.57
2838 3209 2.624364 AGTGCAACATCTTTCATGTGCA 59.376 40.909 0.00 0.00 41.43 4.57
2882 3569 7.496529 TGAGGCTTTATGCTTGTATATTCAC 57.503 36.000 0.00 0.00 42.39 3.18
2948 3635 2.095718 GCTTCAAAACGGAGTAAGGCAG 60.096 50.000 0.00 0.00 45.00 4.85
2950 3637 3.478857 TCAAAACGGAGTAAGGCAGAA 57.521 42.857 0.00 0.00 45.00 3.02
2955 3642 3.202829 ACGGAGTAAGGCAGAAAACAA 57.797 42.857 0.00 0.00 41.94 2.83
3041 3728 5.650703 TGCAGAATATCATATGCATTCCCTG 59.349 40.000 18.69 14.67 43.34 4.45
3065 3752 4.529219 CGGCACCGGCAGCATCTA 62.529 66.667 19.65 0.00 43.71 1.98
3066 3753 2.590007 GGCACCGGCAGCATCTAG 60.590 66.667 19.65 0.00 43.71 2.43
3067 3754 2.187946 GCACCGGCAGCATCTAGT 59.812 61.111 14.06 0.00 40.72 2.57
3090 3777 0.456653 GCCACGATGCCACAAATGAC 60.457 55.000 0.00 0.00 0.00 3.06
3097 3784 1.039068 TGCCACAAATGACCCACAAG 58.961 50.000 0.00 0.00 0.00 3.16
3104 3791 5.066893 CCACAAATGACCCACAAGATATCAG 59.933 44.000 5.32 0.00 0.00 2.90
3115 3802 7.233348 ACCCACAAGATATCAGTGAATTTTGTT 59.767 33.333 22.57 0.49 35.33 2.83
3117 3804 7.756722 CCACAAGATATCAGTGAATTTTGTTCC 59.243 37.037 22.57 0.00 35.33 3.62
3118 3805 8.298854 CACAAGATATCAGTGAATTTTGTTCCA 58.701 33.333 18.35 0.00 35.33 3.53
3123 3810 4.630111 TCAGTGAATTTTGTTCCATTGCC 58.370 39.130 0.00 0.00 0.00 4.52
3126 3813 4.021192 AGTGAATTTTGTTCCATTGCCGAT 60.021 37.500 0.00 0.00 0.00 4.18
3154 3841 7.541162 CCTCTGTTTTCATGCTCATCAAATTA 58.459 34.615 0.00 0.00 0.00 1.40
3158 3845 6.436847 TGTTTTCATGCTCATCAAATTAGGGA 59.563 34.615 0.00 0.00 0.00 4.20
3161 3848 7.664552 TTCATGCTCATCAAATTAGGGAAAT 57.335 32.000 0.00 0.00 0.00 2.17
3164 3851 9.370930 TCATGCTCATCAAATTAGGGAAATAAT 57.629 29.630 0.00 0.00 0.00 1.28
3208 3896 9.645059 TGTCACTGTAAAATTTGAAATTTCACA 57.355 25.926 20.35 16.17 36.83 3.58
3209 3897 9.900264 GTCACTGTAAAATTTGAAATTTCACAC 57.100 29.630 20.35 12.86 36.83 3.82
3210 3898 9.645059 TCACTGTAAAATTTGAAATTTCACACA 57.355 25.926 20.35 15.76 36.83 3.72
3238 3926 8.964150 GTGCACGTATGAAAAGAAGTTAAAATT 58.036 29.630 0.00 0.00 0.00 1.82
3286 3986 1.877637 TCATTACATCGATTGGCCGG 58.122 50.000 0.00 0.00 0.00 6.13
3293 3993 1.336440 CATCGATTGGCCGGCAAAATA 59.664 47.619 30.85 13.54 0.00 1.40
3295 3995 1.606668 TCGATTGGCCGGCAAAATATC 59.393 47.619 30.85 17.07 0.00 1.63
3306 4006 2.444351 GCAAAATATCTCACGTGCTGC 58.556 47.619 11.67 5.46 0.00 5.25
3310 4010 2.627515 ATATCTCACGTGCTGCCAAT 57.372 45.000 11.67 0.42 0.00 3.16
3342 4042 1.134367 CTACGGGTTCAGCTTCGATCA 59.866 52.381 0.00 0.00 0.00 2.92
3349 4049 3.624861 GGTTCAGCTTCGATCATCATTGT 59.375 43.478 0.00 0.00 0.00 2.71
3357 4057 4.670896 TCGATCATCATTGTAGCTCCAA 57.329 40.909 0.00 0.00 0.00 3.53
3364 4064 8.701908 ATCATCATTGTAGCTCCAAAATGTAT 57.298 30.769 13.73 7.01 32.92 2.29
3375 4075 5.743130 GCTCCAAAATGTATCCTAGCTAGCA 60.743 44.000 18.83 8.18 0.00 3.49
3379 4079 7.235606 TCCAAAATGTATCCTAGCTAGCAGTAT 59.764 37.037 18.83 7.40 0.00 2.12
3385 4085 1.274728 CCTAGCTAGCAGTATGGCCAG 59.725 57.143 18.83 0.00 35.86 4.85
3411 4111 2.234908 ACAATATGGCTAGATCGAGGCC 59.765 50.000 23.43 19.53 45.45 5.19
3472 4172 1.860078 GCCGTTCCTCGTTGTCTTG 59.140 57.895 0.00 0.00 37.94 3.02
3479 4179 0.734253 CCTCGTTGTCTTGCTCCTCG 60.734 60.000 0.00 0.00 0.00 4.63
3485 4185 4.135153 TCTTGCTCCTCGCTCGGC 62.135 66.667 0.00 0.00 40.11 5.54
3492 4192 4.803426 CCTCGCTCGGCCAGTCAC 62.803 72.222 2.24 0.00 0.00 3.67
3514 4214 3.653009 CCAGTGTGTGCGCACCTG 61.653 66.667 35.72 31.28 44.65 4.00
3515 4215 3.653009 CAGTGTGTGCGCACCTGG 61.653 66.667 35.72 17.66 44.65 4.45
3516 4216 3.860605 AGTGTGTGCGCACCTGGA 61.861 61.111 35.72 16.34 44.65 3.86
3517 4217 3.349006 GTGTGTGCGCACCTGGAG 61.349 66.667 35.72 0.00 44.65 3.86
3536 4236 4.221422 ACGGGTCCGGATGCATCG 62.221 66.667 20.15 14.71 44.69 3.84
3571 4271 5.464965 GCAATAGCGCACTAGTAGAAAAA 57.535 39.130 11.47 0.00 0.00 1.94
3572 4272 5.493735 GCAATAGCGCACTAGTAGAAAAAG 58.506 41.667 11.47 0.00 0.00 2.27
3573 4273 5.502544 GCAATAGCGCACTAGTAGAAAAAGG 60.503 44.000 11.47 0.00 0.00 3.11
3574 4274 3.955650 AGCGCACTAGTAGAAAAAGGA 57.044 42.857 11.47 0.00 0.00 3.36
3575 4275 4.473477 AGCGCACTAGTAGAAAAAGGAT 57.527 40.909 11.47 0.00 0.00 3.24
3576 4276 4.434520 AGCGCACTAGTAGAAAAAGGATC 58.565 43.478 11.47 0.00 0.00 3.36
3577 4277 4.081642 AGCGCACTAGTAGAAAAAGGATCA 60.082 41.667 11.47 0.00 0.00 2.92
3578 4278 4.630069 GCGCACTAGTAGAAAAAGGATCAA 59.370 41.667 0.30 0.00 0.00 2.57
3579 4279 5.121768 GCGCACTAGTAGAAAAAGGATCAAA 59.878 40.000 0.30 0.00 0.00 2.69
3580 4280 6.183360 GCGCACTAGTAGAAAAAGGATCAAAT 60.183 38.462 0.30 0.00 0.00 2.32
3581 4281 7.011109 GCGCACTAGTAGAAAAAGGATCAAATA 59.989 37.037 0.30 0.00 0.00 1.40
3582 4282 9.046296 CGCACTAGTAGAAAAAGGATCAAATAT 57.954 33.333 3.59 0.00 0.00 1.28
3600 4300 9.706691 ATCAAATATGAGTAACATTAGTACCGG 57.293 33.333 0.00 0.00 39.39 5.28
3601 4301 8.698210 TCAAATATGAGTAACATTAGTACCGGT 58.302 33.333 13.98 13.98 40.07 5.28
3602 4302 9.321562 CAAATATGAGTAACATTAGTACCGGTT 57.678 33.333 15.04 0.00 40.07 4.44
3603 4303 8.882415 AATATGAGTAACATTAGTACCGGTTG 57.118 34.615 15.04 7.13 40.07 3.77
3604 4304 4.497300 TGAGTAACATTAGTACCGGTTGC 58.503 43.478 15.04 6.57 0.00 4.17
3605 4305 4.021280 TGAGTAACATTAGTACCGGTTGCA 60.021 41.667 15.04 0.00 0.00 4.08
3606 4306 5.093849 AGTAACATTAGTACCGGTTGCAT 57.906 39.130 15.04 0.00 0.00 3.96
3607 4307 6.127394 TGAGTAACATTAGTACCGGTTGCATA 60.127 38.462 15.04 0.00 0.00 3.14
3608 4308 6.823497 AGTAACATTAGTACCGGTTGCATAT 58.177 36.000 15.04 0.00 0.00 1.78
3609 4309 6.704493 AGTAACATTAGTACCGGTTGCATATG 59.296 38.462 15.04 13.07 0.00 1.78
3610 4310 5.284861 ACATTAGTACCGGTTGCATATGA 57.715 39.130 15.04 0.00 0.00 2.15
3611 4311 5.297547 ACATTAGTACCGGTTGCATATGAG 58.702 41.667 15.04 0.00 0.00 2.90
3612 4312 2.240493 AGTACCGGTTGCATATGAGC 57.760 50.000 15.04 0.00 0.00 4.26
3613 4313 1.202651 AGTACCGGTTGCATATGAGCC 60.203 52.381 15.04 3.83 0.00 4.70
3614 4314 0.249699 TACCGGTTGCATATGAGCCG 60.250 55.000 15.04 19.42 41.82 5.52
3615 4315 3.333414 CGGTTGCATATGAGCCGG 58.667 61.111 18.92 0.00 38.86 6.13
3616 4316 2.896801 CGGTTGCATATGAGCCGGC 61.897 63.158 21.89 21.89 38.86 6.13
3617 4317 1.823470 GGTTGCATATGAGCCGGCA 60.823 57.895 31.54 9.64 0.00 5.69
3618 4318 1.356624 GTTGCATATGAGCCGGCAC 59.643 57.895 31.54 24.60 35.74 5.01
3619 4319 1.097547 GTTGCATATGAGCCGGCACT 61.098 55.000 31.54 15.07 35.74 4.40
3620 4320 0.467804 TTGCATATGAGCCGGCACTA 59.532 50.000 31.54 16.90 35.74 2.74
3621 4321 0.467804 TGCATATGAGCCGGCACTAA 59.532 50.000 31.54 15.12 0.00 2.24
3622 4322 1.072173 TGCATATGAGCCGGCACTAAT 59.928 47.619 31.54 17.90 0.00 1.73
3623 4323 1.466167 GCATATGAGCCGGCACTAATG 59.534 52.381 31.54 26.80 0.00 1.90
3638 4338 1.577468 TAATGCGTCCATTAGTGCCG 58.423 50.000 0.00 0.00 41.68 5.69
3639 4339 1.095228 AATGCGTCCATTAGTGCCGG 61.095 55.000 0.00 0.00 39.81 6.13
3640 4340 2.125269 GCGTCCATTAGTGCCGGT 60.125 61.111 1.90 0.00 0.00 5.28
3641 4341 1.743995 GCGTCCATTAGTGCCGGTT 60.744 57.895 1.90 0.00 0.00 4.44
3642 4342 1.702491 GCGTCCATTAGTGCCGGTTC 61.702 60.000 1.90 0.00 0.00 3.62
3643 4343 0.390603 CGTCCATTAGTGCCGGTTCA 60.391 55.000 1.90 0.00 0.00 3.18
3644 4344 1.816074 GTCCATTAGTGCCGGTTCAA 58.184 50.000 1.90 0.00 0.00 2.69
3645 4345 2.156098 GTCCATTAGTGCCGGTTCAAA 58.844 47.619 1.90 0.00 0.00 2.69
3646 4346 2.752903 GTCCATTAGTGCCGGTTCAAAT 59.247 45.455 1.90 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.621197 TTAAATGGAAGTTGGTGATCACG 57.379 39.130 19.33 0.00 0.00 4.35
3 4 8.281212 ACTATTAAATGGAAGTTGGTGATCAC 57.719 34.615 17.91 17.91 0.00 3.06
5 6 9.832445 TCTACTATTAAATGGAAGTTGGTGATC 57.168 33.333 0.00 0.00 0.00 2.92
6 7 9.838339 CTCTACTATTAAATGGAAGTTGGTGAT 57.162 33.333 0.00 0.00 0.00 3.06
7 8 9.042450 TCTCTACTATTAAATGGAAGTTGGTGA 57.958 33.333 0.00 0.00 0.00 4.02
8 9 9.838339 ATCTCTACTATTAAATGGAAGTTGGTG 57.162 33.333 0.00 0.00 0.00 4.17
25 26 9.402786 TGGAGTCCTAAACCTATATCTCTACTA 57.597 37.037 11.33 0.00 0.00 1.82
26 27 8.290463 TGGAGTCCTAAACCTATATCTCTACT 57.710 38.462 11.33 0.00 0.00 2.57
27 28 8.937207 TTGGAGTCCTAAACCTATATCTCTAC 57.063 38.462 11.33 0.00 0.00 2.59
36 37 9.940974 TGTAGTATTATTGGAGTCCTAAACCTA 57.059 33.333 11.33 4.00 0.00 3.08
38 39 8.702819 AGTGTAGTATTATTGGAGTCCTAAACC 58.297 37.037 11.33 0.00 0.00 3.27
39 40 9.747293 GAGTGTAGTATTATTGGAGTCCTAAAC 57.253 37.037 11.33 0.00 0.00 2.01
40 41 9.483489 TGAGTGTAGTATTATTGGAGTCCTAAA 57.517 33.333 11.33 2.35 0.00 1.85
42 43 8.280084 AGTGAGTGTAGTATTATTGGAGTCCTA 58.720 37.037 11.33 2.56 0.00 2.94
43 44 7.126733 AGTGAGTGTAGTATTATTGGAGTCCT 58.873 38.462 11.33 0.00 0.00 3.85
44 45 7.349412 AGTGAGTGTAGTATTATTGGAGTCC 57.651 40.000 0.73 0.73 0.00 3.85
45 46 8.077386 GCTAGTGAGTGTAGTATTATTGGAGTC 58.923 40.741 0.00 0.00 0.00 3.36
47 48 8.172352 AGCTAGTGAGTGTAGTATTATTGGAG 57.828 38.462 0.00 0.00 0.00 3.86
53 54 9.676861 TGTAAGAAGCTAGTGAGTGTAGTATTA 57.323 33.333 0.00 0.00 0.00 0.98
55 56 8.754991 ATGTAAGAAGCTAGTGAGTGTAGTAT 57.245 34.615 0.00 0.00 0.00 2.12
56 57 9.676861 TTATGTAAGAAGCTAGTGAGTGTAGTA 57.323 33.333 0.00 0.00 0.00 1.82
57 58 8.577048 TTATGTAAGAAGCTAGTGAGTGTAGT 57.423 34.615 0.00 0.00 0.00 2.73
79 80 9.905713 TGTGGAGAGTTTAGCAAAGAATATTAT 57.094 29.630 0.00 0.00 0.00 1.28
80 81 9.383519 CTGTGGAGAGTTTAGCAAAGAATATTA 57.616 33.333 0.00 0.00 0.00 0.98
81 82 7.148171 GCTGTGGAGAGTTTAGCAAAGAATATT 60.148 37.037 0.00 0.00 34.64 1.28
83 84 5.643777 GCTGTGGAGAGTTTAGCAAAGAATA 59.356 40.000 0.00 0.00 34.64 1.75
84 85 4.457257 GCTGTGGAGAGTTTAGCAAAGAAT 59.543 41.667 0.00 0.00 34.64 2.40
85 86 3.815401 GCTGTGGAGAGTTTAGCAAAGAA 59.185 43.478 0.00 0.00 34.64 2.52
90 91 0.324943 GGGCTGTGGAGAGTTTAGCA 59.675 55.000 0.00 0.00 36.15 3.49
92 93 1.065854 CAGGGGCTGTGGAGAGTTTAG 60.066 57.143 0.00 0.00 0.00 1.85
93 94 0.984230 CAGGGGCTGTGGAGAGTTTA 59.016 55.000 0.00 0.00 0.00 2.01
94 95 0.768221 TCAGGGGCTGTGGAGAGTTT 60.768 55.000 0.00 0.00 32.61 2.66
95 96 0.768221 TTCAGGGGCTGTGGAGAGTT 60.768 55.000 0.00 0.00 32.61 3.01
97 98 0.622665 AATTCAGGGGCTGTGGAGAG 59.377 55.000 0.00 0.00 32.61 3.20
98 99 1.004745 GAAATTCAGGGGCTGTGGAGA 59.995 52.381 0.00 0.00 32.61 3.71
99 100 1.272092 TGAAATTCAGGGGCTGTGGAG 60.272 52.381 0.00 0.00 32.61 3.86
100 101 0.776810 TGAAATTCAGGGGCTGTGGA 59.223 50.000 0.00 0.00 32.61 4.02
101 102 1.180029 CTGAAATTCAGGGGCTGTGG 58.820 55.000 14.85 0.00 40.71 4.17
102 103 0.529378 GCTGAAATTCAGGGGCTGTG 59.471 55.000 22.73 0.00 44.43 3.66
103 104 2.967270 GCTGAAATTCAGGGGCTGT 58.033 52.632 22.73 0.00 44.43 4.40
109 110 0.523072 CCACACCGCTGAAATTCAGG 59.477 55.000 22.73 11.79 44.43 3.86
110 111 0.523072 CCCACACCGCTGAAATTCAG 59.477 55.000 18.02 18.02 46.90 3.02
113 114 2.275380 GGCCCACACCGCTGAAATT 61.275 57.895 0.00 0.00 0.00 1.82
114 115 2.676471 GGCCCACACCGCTGAAAT 60.676 61.111 0.00 0.00 0.00 2.17
115 116 4.966787 GGGCCCACACCGCTGAAA 62.967 66.667 19.95 0.00 0.00 2.69
122 123 4.035102 GAGTGAGGGGCCCACACC 62.035 72.222 38.93 28.88 44.21 4.16
123 124 1.198759 TTAGAGTGAGGGGCCCACAC 61.199 60.000 36.98 36.98 43.64 3.82
124 125 0.253160 ATTAGAGTGAGGGGCCCACA 60.253 55.000 27.72 23.55 37.01 4.17
125 126 0.470341 GATTAGAGTGAGGGGCCCAC 59.530 60.000 27.72 20.67 34.89 4.61
126 127 0.343372 AGATTAGAGTGAGGGGCCCA 59.657 55.000 27.72 0.43 0.00 5.36
127 128 1.052617 GAGATTAGAGTGAGGGGCCC 58.947 60.000 17.12 17.12 0.00 5.80
129 130 2.367241 GGAAGAGATTAGAGTGAGGGGC 59.633 54.545 0.00 0.00 0.00 5.80
130 131 3.647636 TGGAAGAGATTAGAGTGAGGGG 58.352 50.000 0.00 0.00 0.00 4.79
131 132 5.885449 ATTGGAAGAGATTAGAGTGAGGG 57.115 43.478 0.00 0.00 0.00 4.30
132 133 8.243961 TCTTATTGGAAGAGATTAGAGTGAGG 57.756 38.462 0.00 0.00 0.00 3.86
141 142 8.100164 GCTAGGCTAATCTTATTGGAAGAGATT 58.900 37.037 0.00 0.00 41.55 2.40
143 144 6.784969 AGCTAGGCTAATCTTATTGGAAGAGA 59.215 38.462 0.00 0.00 36.99 3.10
144 145 7.003402 AGCTAGGCTAATCTTATTGGAAGAG 57.997 40.000 0.00 0.00 36.99 2.85
145 146 8.671987 ATAGCTAGGCTAATCTTATTGGAAGA 57.328 34.615 0.00 0.00 44.62 2.87
148 149 8.478877 GCTTATAGCTAGGCTAATCTTATTGGA 58.521 37.037 0.00 0.00 44.62 3.53
150 151 9.829507 ATGCTTATAGCTAGGCTAATCTTATTG 57.170 33.333 14.31 0.00 44.62 1.90
152 153 8.646900 GGATGCTTATAGCTAGGCTAATCTTAT 58.353 37.037 14.31 0.00 44.62 1.73
153 154 7.070074 GGGATGCTTATAGCTAGGCTAATCTTA 59.930 40.741 14.31 0.00 44.62 2.10
154 155 6.126911 GGGATGCTTATAGCTAGGCTAATCTT 60.127 42.308 14.31 0.00 44.62 2.40
156 157 5.365314 AGGGATGCTTATAGCTAGGCTAATC 59.635 44.000 14.31 10.57 44.62 1.75
158 159 4.467795 CAGGGATGCTTATAGCTAGGCTAA 59.532 45.833 14.31 2.44 44.62 3.09
159 160 4.026744 CAGGGATGCTTATAGCTAGGCTA 58.973 47.826 14.31 1.64 45.55 3.93
160 161 2.836981 CAGGGATGCTTATAGCTAGGCT 59.163 50.000 14.31 0.00 42.97 4.58
161 162 2.569404 ACAGGGATGCTTATAGCTAGGC 59.431 50.000 0.00 4.47 42.97 3.93
163 164 7.550906 GGATTTTACAGGGATGCTTATAGCTAG 59.449 40.741 0.00 0.00 42.97 3.42
165 166 6.183361 TGGATTTTACAGGGATGCTTATAGCT 60.183 38.462 0.00 0.00 42.97 3.32
166 167 6.003950 TGGATTTTACAGGGATGCTTATAGC 58.996 40.000 0.00 0.00 42.82 2.97
171 172 7.919385 AATTATGGATTTTACAGGGATGCTT 57.081 32.000 0.00 0.00 0.00 3.91
176 177 9.528489 GGCTTATAATTATGGATTTTACAGGGA 57.472 33.333 8.28 0.00 0.00 4.20
177 178 8.749354 GGGCTTATAATTATGGATTTTACAGGG 58.251 37.037 8.28 0.00 0.00 4.45
178 179 8.458843 CGGGCTTATAATTATGGATTTTACAGG 58.541 37.037 8.28 0.00 0.00 4.00
179 180 9.010029 ACGGGCTTATAATTATGGATTTTACAG 57.990 33.333 8.28 0.00 0.00 2.74
180 181 8.927675 ACGGGCTTATAATTATGGATTTTACA 57.072 30.769 8.28 0.00 0.00 2.41
182 183 9.575868 TGAACGGGCTTATAATTATGGATTTTA 57.424 29.630 8.28 0.00 0.00 1.52
183 184 8.472007 TGAACGGGCTTATAATTATGGATTTT 57.528 30.769 8.28 0.00 0.00 1.82
185 186 7.669722 ACATGAACGGGCTTATAATTATGGATT 59.330 33.333 8.28 0.00 0.00 3.01
186 187 7.175104 ACATGAACGGGCTTATAATTATGGAT 58.825 34.615 8.28 0.00 0.00 3.41
187 188 6.539173 ACATGAACGGGCTTATAATTATGGA 58.461 36.000 8.28 0.00 0.00 3.41
188 189 6.817765 ACATGAACGGGCTTATAATTATGG 57.182 37.500 8.28 2.58 0.00 2.74
189 190 6.582295 GCAACATGAACGGGCTTATAATTATG 59.418 38.462 8.28 0.00 0.00 1.90
190 191 6.264292 TGCAACATGAACGGGCTTATAATTAT 59.736 34.615 0.00 2.97 0.00 1.28
191 192 5.590663 TGCAACATGAACGGGCTTATAATTA 59.409 36.000 0.00 0.00 0.00 1.40
193 194 3.951037 TGCAACATGAACGGGCTTATAAT 59.049 39.130 0.00 0.00 0.00 1.28
195 196 2.992593 TGCAACATGAACGGGCTTATA 58.007 42.857 0.00 0.00 0.00 0.98
196 197 1.832883 TGCAACATGAACGGGCTTAT 58.167 45.000 0.00 0.00 0.00 1.73
197 198 1.742831 GATGCAACATGAACGGGCTTA 59.257 47.619 0.00 0.00 0.00 3.09
198 199 0.527565 GATGCAACATGAACGGGCTT 59.472 50.000 0.00 0.00 0.00 4.35
199 200 1.647545 CGATGCAACATGAACGGGCT 61.648 55.000 0.00 0.00 0.00 5.19
200 201 1.226379 CGATGCAACATGAACGGGC 60.226 57.895 0.00 0.00 0.00 6.13
201 202 1.226379 GCGATGCAACATGAACGGG 60.226 57.895 0.00 0.00 0.00 5.28
202 203 0.247814 GAGCGATGCAACATGAACGG 60.248 55.000 0.00 0.00 0.00 4.44
203 204 0.723414 AGAGCGATGCAACATGAACG 59.277 50.000 0.00 0.00 0.00 3.95
204 205 2.907910 AAGAGCGATGCAACATGAAC 57.092 45.000 0.00 0.00 0.00 3.18
206 207 2.168313 TCCTAAGAGCGATGCAACATGA 59.832 45.455 0.00 0.00 0.00 3.07
208 209 2.169352 AGTCCTAAGAGCGATGCAACAT 59.831 45.455 0.00 0.00 0.00 2.71
209 210 1.550524 AGTCCTAAGAGCGATGCAACA 59.449 47.619 0.00 0.00 0.00 3.33
210 211 2.197577 GAGTCCTAAGAGCGATGCAAC 58.802 52.381 0.00 0.00 0.00 4.17
211 212 1.137086 GGAGTCCTAAGAGCGATGCAA 59.863 52.381 0.41 0.00 0.00 4.08
213 214 0.032815 GGGAGTCCTAAGAGCGATGC 59.967 60.000 9.58 0.00 0.00 3.91
214 215 1.698506 AGGGAGTCCTAAGAGCGATG 58.301 55.000 9.58 0.00 42.75 3.84
218 219 1.135333 CGTGAAGGGAGTCCTAAGAGC 59.865 57.143 9.58 0.00 44.07 4.09
220 221 2.893215 TCGTGAAGGGAGTCCTAAGA 57.107 50.000 9.58 0.00 44.07 2.10
221 222 2.362717 GGATCGTGAAGGGAGTCCTAAG 59.637 54.545 9.58 0.00 44.07 2.18
360 364 0.792640 CATGTCTCACGTTGGCTGAC 59.207 55.000 0.00 0.00 0.00 3.51
470 474 0.684805 TTCCGTGGGCCACAACTTTT 60.685 50.000 34.11 0.00 33.40 2.27
471 475 0.469144 ATTCCGTGGGCCACAACTTT 60.469 50.000 34.11 13.23 33.40 2.66
497 501 5.287674 TGGAGTGATCAGAGATGGATTTC 57.712 43.478 0.00 0.00 0.00 2.17
574 578 7.831690 TCATGCATAGTACAAATGGGAAAAGTA 59.168 33.333 0.00 0.00 0.00 2.24
605 615 3.347077 AAGCTCATGGACTTTCTCAGG 57.653 47.619 0.00 0.00 0.00 3.86
614 624 3.445096 AGGCAACATTAAAGCTCATGGAC 59.555 43.478 0.00 0.00 41.41 4.02
629 639 0.817229 TTGTGACATGCGAGGCAACA 60.817 50.000 0.00 0.00 43.62 3.33
679 689 0.451783 CGAAAAGGAGGAAATGCCCG 59.548 55.000 0.00 0.00 37.37 6.13
721 731 4.708177 GAGGAGCTAGGTATGATTTGCAA 58.292 43.478 0.00 0.00 0.00 4.08
722 732 3.243873 CGAGGAGCTAGGTATGATTTGCA 60.244 47.826 0.00 0.00 0.00 4.08
723 733 3.321497 CGAGGAGCTAGGTATGATTTGC 58.679 50.000 0.00 0.00 0.00 3.68
724 734 3.322254 ACCGAGGAGCTAGGTATGATTTG 59.678 47.826 0.00 0.00 37.70 2.32
726 736 3.158676 GACCGAGGAGCTAGGTATGATT 58.841 50.000 0.00 0.00 39.49 2.57
737 747 0.034896 TTTTGTGAGGACCGAGGAGC 59.965 55.000 0.00 0.00 0.00 4.70
888 919 7.390823 GGACATGCCCTAAATTTTTCCTAAAA 58.609 34.615 0.00 0.00 37.62 1.52
918 950 6.925211 TGTCCAATTCAATATACCGCAAAAA 58.075 32.000 0.00 0.00 0.00 1.94
919 951 6.516739 TGTCCAATTCAATATACCGCAAAA 57.483 33.333 0.00 0.00 0.00 2.44
920 952 6.545666 AGATGTCCAATTCAATATACCGCAAA 59.454 34.615 0.00 0.00 0.00 3.68
923 955 7.667043 TTAGATGTCCAATTCAATATACCGC 57.333 36.000 0.00 0.00 0.00 5.68
931 963 9.527157 TTACTCCATTTTAGATGTCCAATTCAA 57.473 29.630 0.00 0.00 0.00 2.69
932 964 9.177608 CTTACTCCATTTTAGATGTCCAATTCA 57.822 33.333 0.00 0.00 0.00 2.57
933 965 9.396022 TCTTACTCCATTTTAGATGTCCAATTC 57.604 33.333 0.00 0.00 0.00 2.17
935 967 8.552296 AGTCTTACTCCATTTTAGATGTCCAAT 58.448 33.333 0.00 0.00 0.00 3.16
936 968 7.918076 AGTCTTACTCCATTTTAGATGTCCAA 58.082 34.615 0.00 0.00 0.00 3.53
937 969 7.496346 AGTCTTACTCCATTTTAGATGTCCA 57.504 36.000 0.00 0.00 0.00 4.02
1010 1044 0.459489 GGCCAACTTTTGCACACAGA 59.541 50.000 0.00 0.00 0.00 3.41
1134 1168 3.260297 TGCTTGGAAAGGAGGCCA 58.740 55.556 5.01 0.00 46.35 5.36
1234 1268 1.588082 GGAACCGACTGTAGCCGAA 59.412 57.895 0.00 0.00 0.00 4.30
1252 1287 1.453155 AAATGCTGGAGTGCTAACGG 58.547 50.000 0.00 0.00 0.00 4.44
1255 1290 3.002791 CTCGAAAATGCTGGAGTGCTAA 58.997 45.455 0.00 0.00 0.00 3.09
1259 1294 3.686241 TCATTCTCGAAAATGCTGGAGTG 59.314 43.478 6.59 0.00 36.72 3.51
1289 1326 4.527509 ATGAAAGCGACATCGATATCCT 57.472 40.909 5.26 0.00 43.02 3.24
1297 1334 6.017605 AGGAACATTCATATGAAAGCGACATC 60.018 38.462 21.50 12.30 37.61 3.06
1381 1424 2.978018 GCTGCCGGAAAAACTCCCG 61.978 63.158 5.05 0.00 41.87 5.14
1606 1652 0.607489 AAGACATGGCAGTGTGAGGC 60.607 55.000 0.00 0.00 31.16 4.70
1615 1677 6.318648 GGTAATTAGATTGTGAAGACATGGCA 59.681 38.462 0.00 0.00 30.13 4.92
1671 1733 8.014517 TGCAATATACAACAATATATGCACGTG 58.985 33.333 12.28 12.28 34.56 4.49
1734 1809 2.625314 CGGAGCAGATCATCCTTCACTA 59.375 50.000 9.24 0.00 33.12 2.74
1812 1887 1.993370 CGTTAGTGAAAGGCTTCTCCG 59.007 52.381 0.00 0.00 40.77 4.63
1915 1990 2.617308 GCTGTCATCAACCATGAGGATG 59.383 50.000 12.31 12.31 46.83 3.51
1916 1991 2.744166 CGCTGTCATCAACCATGAGGAT 60.744 50.000 0.00 0.00 46.83 3.24
2095 2174 9.606631 AACTATTTACATTGGCAAGTTGAAAAA 57.393 25.926 7.16 7.20 0.00 1.94
2102 2181 6.015772 ACCGAAAACTATTTACATTGGCAAGT 60.016 34.615 5.96 6.81 0.00 3.16
2106 2185 8.833493 ACTATACCGAAAACTATTTACATTGGC 58.167 33.333 0.00 0.00 0.00 4.52
2131 2210 7.678947 AAATATATGTGCAGGCTAGATTCAC 57.321 36.000 0.00 0.00 0.00 3.18
2168 2432 3.880047 AGGCAGCAGTTTATACGTACA 57.120 42.857 0.00 0.00 0.00 2.90
2184 2448 2.530460 TTACCGGGTAAGACTAGGCA 57.470 50.000 15.52 0.00 0.00 4.75
2187 2451 5.359009 TGATGTCTTTACCGGGTAAGACTAG 59.641 44.000 32.75 21.13 32.69 2.57
2193 2457 5.623956 ATGATGATGTCTTTACCGGGTAA 57.376 39.130 15.52 15.52 0.00 2.85
2199 2463 5.235305 ACGCAAATGATGATGTCTTTACC 57.765 39.130 0.00 0.00 0.00 2.85
2297 2563 1.525995 CATGGTCCCGGGCATGTAC 60.526 63.158 25.22 15.18 0.00 2.90
2430 2703 2.022764 TTGTCATGACCCTATGCACG 57.977 50.000 22.85 0.00 0.00 5.34
2568 2841 2.371841 TGCCACAATGTAGTCCTTGACT 59.628 45.455 1.94 1.94 45.54 3.41
2793 3164 3.489355 CATATGTGAGGGCCAATGCTAA 58.511 45.455 6.18 0.00 37.74 3.09
2882 3569 9.498176 ACACCTATAAGTGGTTTTTAACTAGTG 57.502 33.333 6.44 0.00 42.28 2.74
2902 3589 5.475909 CGGCTCCACTATTTATCTACACCTA 59.524 44.000 0.00 0.00 0.00 3.08
2919 3606 2.258013 CGTTTTGAAGCCGGCTCCA 61.258 57.895 32.93 23.93 0.00 3.86
2922 3609 1.966451 CTCCGTTTTGAAGCCGGCT 60.966 57.895 27.08 27.08 41.46 5.52
2924 3611 1.463444 CTTACTCCGTTTTGAAGCCGG 59.537 52.381 0.00 0.00 43.03 6.13
2948 3635 9.182933 CTCTATAGTATAGACGCCTTTGTTTTC 57.817 37.037 14.72 0.00 0.00 2.29
2950 3637 7.659186 CCTCTATAGTATAGACGCCTTTGTTT 58.341 38.462 14.72 0.00 0.00 2.83
2955 3642 4.701171 GTGCCTCTATAGTATAGACGCCTT 59.299 45.833 25.66 0.00 0.00 4.35
2979 3666 2.045438 CCATAGCCAACGCCACCA 60.045 61.111 0.00 0.00 34.57 4.17
2985 3672 1.775039 CGTCCATGCCATAGCCAACG 61.775 60.000 0.00 0.00 38.69 4.10
3052 3739 1.141881 CGAACTAGATGCTGCCGGT 59.858 57.895 1.90 0.00 0.00 5.28
3053 3740 1.592669 CCGAACTAGATGCTGCCGG 60.593 63.158 0.00 0.00 0.00 6.13
3054 3741 2.240500 GCCGAACTAGATGCTGCCG 61.241 63.158 0.00 0.00 0.00 5.69
3055 3742 1.889573 GGCCGAACTAGATGCTGCC 60.890 63.158 0.00 0.00 0.00 4.85
3056 3743 1.153369 TGGCCGAACTAGATGCTGC 60.153 57.895 0.00 0.00 0.00 5.25
3057 3744 1.148157 CGTGGCCGAACTAGATGCTG 61.148 60.000 0.00 0.00 35.63 4.41
3058 3745 1.141881 CGTGGCCGAACTAGATGCT 59.858 57.895 0.00 0.00 35.63 3.79
3059 3746 1.141019 TCGTGGCCGAACTAGATGC 59.859 57.895 0.00 0.00 40.86 3.91
3090 3777 7.161773 ACAAAATTCACTGATATCTTGTGGG 57.838 36.000 20.88 5.84 33.04 4.61
3115 3802 2.108976 GAGGCGATCGGCAATGGA 59.891 61.111 38.28 0.00 46.16 3.41
3117 3804 1.091771 AACAGAGGCGATCGGCAATG 61.092 55.000 38.28 34.16 46.16 2.82
3118 3805 0.392998 AAACAGAGGCGATCGGCAAT 60.393 50.000 38.28 25.35 46.16 3.56
3123 3810 1.267732 GCATGAAAACAGAGGCGATCG 60.268 52.381 11.69 11.69 0.00 3.69
3126 3813 1.270785 TGAGCATGAAAACAGAGGCGA 60.271 47.619 0.00 0.00 0.00 5.54
3206 3894 3.812609 TCTTTTCATACGTGCACATGTGT 59.187 39.130 26.01 9.67 0.00 3.72
3207 3895 4.403015 TCTTTTCATACGTGCACATGTG 57.597 40.909 21.83 21.83 0.00 3.21
3208 3896 4.515191 ACTTCTTTTCATACGTGCACATGT 59.485 37.500 18.64 10.16 0.00 3.21
3209 3897 5.034554 ACTTCTTTTCATACGTGCACATG 57.965 39.130 18.64 13.91 0.00 3.21
3210 3898 5.689383 AACTTCTTTTCATACGTGCACAT 57.311 34.783 18.64 3.45 0.00 3.21
3211 3899 6.606234 TTAACTTCTTTTCATACGTGCACA 57.394 33.333 18.64 0.00 0.00 4.57
3212 3900 7.901874 TTTTAACTTCTTTTCATACGTGCAC 57.098 32.000 6.82 6.82 0.00 4.57
3213 3901 8.963130 CAATTTTAACTTCTTTTCATACGTGCA 58.037 29.630 0.00 0.00 0.00 4.57
3258 3958 7.602644 GGCCAATCGATGTAATGATCTAAGTTA 59.397 37.037 0.00 0.00 0.00 2.24
3275 3975 1.606668 GATATTTTGCCGGCCAATCGA 59.393 47.619 26.77 4.52 32.49 3.59
3282 3982 1.014352 ACGTGAGATATTTTGCCGGC 58.986 50.000 22.73 22.73 0.00 6.13
3286 3986 2.444351 GCAGCACGTGAGATATTTTGC 58.556 47.619 22.23 10.73 0.00 3.68
3293 3993 1.538047 AAATTGGCAGCACGTGAGAT 58.462 45.000 22.23 0.30 0.00 2.75
3295 3995 2.855180 CTTAAATTGGCAGCACGTGAG 58.145 47.619 22.23 12.08 0.00 3.51
3329 4029 4.509230 GCTACAATGATGATCGAAGCTGAA 59.491 41.667 0.00 0.00 0.00 3.02
3337 4037 5.739752 TTTTGGAGCTACAATGATGATCG 57.260 39.130 13.36 0.00 0.00 3.69
3342 4042 7.293073 AGGATACATTTTGGAGCTACAATGAT 58.707 34.615 17.39 10.12 41.41 2.45
3349 4049 6.295349 GCTAGCTAGGATACATTTTGGAGCTA 60.295 42.308 22.10 0.00 39.60 3.32
3357 4057 6.575254 GCCATACTGCTAGCTAGGATACATTT 60.575 42.308 22.10 4.68 41.41 2.32
3364 4064 1.133167 TGGCCATACTGCTAGCTAGGA 60.133 52.381 22.10 18.55 0.00 2.94
3375 4075 4.287067 CCATATTGTAGGACTGGCCATACT 59.713 45.833 5.51 7.62 40.02 2.12
3379 4079 1.142870 GCCATATTGTAGGACTGGCCA 59.857 52.381 4.71 4.71 45.26 5.36
3385 4085 5.163602 CCTCGATCTAGCCATATTGTAGGAC 60.164 48.000 0.00 0.00 0.00 3.85
3411 4111 0.383949 GTCCTTCTGCGCTCTAGAGG 59.616 60.000 21.23 12.11 0.00 3.69
3458 4158 1.000955 GAGGAGCAAGACAACGAGGAA 59.999 52.381 0.00 0.00 0.00 3.36
3485 4185 2.666190 CACTGGCCACGTGACTGG 60.666 66.667 23.25 0.14 34.35 4.00
3489 4189 2.203001 CACACACTGGCCACGTGA 60.203 61.111 30.11 0.00 36.29 4.35
3509 4209 4.394712 GGACCCGTGCTCCAGGTG 62.395 72.222 0.16 0.00 32.81 4.00
3514 4214 4.530857 CATCCGGACCCGTGCTCC 62.531 72.222 6.12 0.00 37.81 4.70
3517 4217 4.856801 ATGCATCCGGACCCGTGC 62.857 66.667 18.78 18.78 40.35 5.34
3518 4218 2.588877 GATGCATCCGGACCCGTG 60.589 66.667 16.23 1.27 37.81 4.94
3519 4219 4.221422 CGATGCATCCGGACCCGT 62.221 66.667 20.87 0.99 37.81 5.28
3533 4233 1.399744 TTGCGGCCTCCATAGTCGAT 61.400 55.000 0.00 0.00 0.00 3.59
3536 4236 1.941668 GCTATTGCGGCCTCCATAGTC 60.942 57.143 13.68 4.72 0.00 2.59
3574 4274 9.706691 CCGGTACTAATGTTACTCATATTTGAT 57.293 33.333 0.00 0.00 35.48 2.57
3575 4275 8.698210 ACCGGTACTAATGTTACTCATATTTGA 58.302 33.333 4.49 0.00 35.48 2.69
3576 4276 8.882415 ACCGGTACTAATGTTACTCATATTTG 57.118 34.615 4.49 0.00 35.48 2.32
3577 4277 9.321562 CAACCGGTACTAATGTTACTCATATTT 57.678 33.333 8.00 0.00 35.48 1.40
3578 4278 7.440255 GCAACCGGTACTAATGTTACTCATATT 59.560 37.037 8.00 0.00 35.48 1.28
3579 4279 6.927381 GCAACCGGTACTAATGTTACTCATAT 59.073 38.462 8.00 0.00 35.48 1.78
3580 4280 6.127394 TGCAACCGGTACTAATGTTACTCATA 60.127 38.462 8.00 0.00 35.48 2.15
3581 4281 5.114081 GCAACCGGTACTAATGTTACTCAT 58.886 41.667 8.00 0.00 38.57 2.90
3582 4282 4.021280 TGCAACCGGTACTAATGTTACTCA 60.021 41.667 8.00 0.00 0.00 3.41
3583 4283 4.497300 TGCAACCGGTACTAATGTTACTC 58.503 43.478 8.00 0.00 0.00 2.59
3584 4284 4.540359 TGCAACCGGTACTAATGTTACT 57.460 40.909 8.00 0.00 0.00 2.24
3585 4285 6.702723 TCATATGCAACCGGTACTAATGTTAC 59.297 38.462 8.00 0.00 0.00 2.50
3586 4286 6.818233 TCATATGCAACCGGTACTAATGTTA 58.182 36.000 8.00 0.00 0.00 2.41
3587 4287 5.676552 TCATATGCAACCGGTACTAATGTT 58.323 37.500 8.00 0.00 0.00 2.71
3588 4288 5.284861 TCATATGCAACCGGTACTAATGT 57.715 39.130 8.00 0.00 0.00 2.71
3589 4289 4.152402 GCTCATATGCAACCGGTACTAATG 59.848 45.833 8.00 8.97 0.00 1.90
3590 4290 4.315803 GCTCATATGCAACCGGTACTAAT 58.684 43.478 8.00 2.04 0.00 1.73
3591 4291 3.493699 GGCTCATATGCAACCGGTACTAA 60.494 47.826 8.00 0.00 34.04 2.24
3592 4292 2.036733 GGCTCATATGCAACCGGTACTA 59.963 50.000 8.00 0.00 34.04 1.82
3593 4293 1.202651 GGCTCATATGCAACCGGTACT 60.203 52.381 8.00 0.00 34.04 2.73
3594 4294 1.226746 GGCTCATATGCAACCGGTAC 58.773 55.000 8.00 3.53 34.04 3.34
3595 4295 0.249699 CGGCTCATATGCAACCGGTA 60.250 55.000 8.00 0.00 40.18 4.02
3596 4296 1.523711 CGGCTCATATGCAACCGGT 60.524 57.895 17.91 0.00 40.18 5.28
3597 4297 3.333414 CGGCTCATATGCAACCGG 58.667 61.111 17.91 0.00 40.18 5.28
3598 4298 2.896801 GCCGGCTCATATGCAACCG 61.897 63.158 22.15 18.45 43.44 4.44
3599 4299 1.823470 TGCCGGCTCATATGCAACC 60.823 57.895 29.70 0.00 34.04 3.77
3600 4300 1.097547 AGTGCCGGCTCATATGCAAC 61.098 55.000 29.70 14.02 35.16 4.17
3601 4301 0.467804 TAGTGCCGGCTCATATGCAA 59.532 50.000 29.70 0.00 35.16 4.08
3602 4302 0.467804 TTAGTGCCGGCTCATATGCA 59.532 50.000 29.70 0.07 34.04 3.96
3603 4303 1.466167 CATTAGTGCCGGCTCATATGC 59.534 52.381 29.70 8.72 0.00 3.14
3604 4304 1.466167 GCATTAGTGCCGGCTCATATG 59.534 52.381 29.70 27.22 45.76 1.78
3605 4305 1.813513 GCATTAGTGCCGGCTCATAT 58.186 50.000 29.70 17.62 45.76 1.78
3606 4306 3.305709 GCATTAGTGCCGGCTCATA 57.694 52.632 29.70 16.06 45.76 2.15
3607 4307 4.147701 GCATTAGTGCCGGCTCAT 57.852 55.556 29.70 15.76 45.76 2.90
3618 4318 1.526887 CGGCACTAATGGACGCATTAG 59.473 52.381 16.60 16.60 45.68 1.73
3619 4319 1.577468 CGGCACTAATGGACGCATTA 58.423 50.000 0.00 0.00 0.00 1.90
3620 4320 1.095228 CCGGCACTAATGGACGCATT 61.095 55.000 0.00 0.00 0.00 3.56
3621 4321 1.523711 CCGGCACTAATGGACGCAT 60.524 57.895 0.00 0.00 0.00 4.73
3622 4322 2.125310 CCGGCACTAATGGACGCA 60.125 61.111 0.00 0.00 0.00 5.24
3623 4323 1.702491 GAACCGGCACTAATGGACGC 61.702 60.000 0.00 0.00 0.00 5.19
3624 4324 0.390603 TGAACCGGCACTAATGGACG 60.391 55.000 0.00 0.00 0.00 4.79
3625 4325 1.816074 TTGAACCGGCACTAATGGAC 58.184 50.000 0.00 0.00 0.00 4.02
3626 4326 2.570415 TTTGAACCGGCACTAATGGA 57.430 45.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.