AutoCloner

Multiple sequence alignment - TraesCS4A01G442200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G442200	chr4A	100.000	2882	0	0	1	2882	710273168	710270287	0.000000e+00	5323.0
1	TraesCS4A01G442200	chr4A	87.197	2101	172	48	857	2882	710284219	710282141	0.000000e+00	2300.0
2	TraesCS4A01G442200	chr4A	87.417	1049	127	4	936	1983	710676681	710675637	0.000000e+00	1201.0
3	TraesCS4A01G442200	chr4A	87.839	995	120	1	936	1929	710694879	710693885	0.000000e+00	1166.0
4	TraesCS4A01G442200	chr4A	97.432	584	13	1	1	582	710285408	710284825	0.000000e+00	994.0
5	TraesCS4A01G442200	chr4A	95.070	284	13	1	581	863	710284528	710284245	2.040000e-121	446.0
6	TraesCS4A01G442200	chr4A	88.362	232	26	1	581	811	710677072	710676841	7.860000e-71	278.0
7	TraesCS4A01G442200	chr4A	87.773	229	28	0	581	809	710695230	710695002	4.730000e-68	268.0
8	TraesCS4A01G442200	chr4A	93.413	167	10	1	312	477	517406636	517406470	2.220000e-61	246.0
9	TraesCS4A01G442200	chr7D	88.487	2380	162	41	581	2857	25898368	25895998	0.000000e+00	2774.0
10	TraesCS4A01G442200	chr7D	85.137	1386	169	20	581	1929	26566205	26564820	0.000000e+00	1384.0
11	TraesCS4A01G442200	chr7D	87.369	1053	129	3	936	1985	26559458	26558407	0.000000e+00	1205.0
12	TraesCS4A01G442200	chr7D	90.625	224	14	4	90	313	25899028	25898812	1.010000e-74	291.0
13	TraesCS4A01G442200	chr7D	85.252	278	38	2	581	857	26559902	26559627	1.690000e-72	283.0
14	TraesCS4A01G442200	chr7D	89.655	58	3	2	146	200	26560492	26560435	1.430000e-08	71.3
15	TraesCS4A01G442200	chr7A	92.355	1452	84	9	887	2314	26823275	26821827	0.000000e+00	2041.0
16	TraesCS4A01G442200	chr7A	84.853	1393	165	19	581	1928	27032649	27031258	0.000000e+00	1362.0
17	TraesCS4A01G442200	chr7A	87.464	1053	128	3	936	1985	26977627	26976576	0.000000e+00	1210.0
18	TraesCS4A01G442200	chr7A	96.721	305	8	2	581	883	26823655	26823351	9.210000e-140	507.0
19	TraesCS4A01G442200	chr7A	90.498	221	15	5	100	317	26824297	26824080	1.310000e-73	287.0
20	TraesCS4A01G442200	chr7A	85.606	264	36	2	581	844	26978081	26977820	2.830000e-70	276.0
21	TraesCS4A01G442200	chr2A	89.130	230	24	1	581	810	448294589	448294361	4.700000e-73	285.0
22	TraesCS4A01G442200	chr3B	88.412	233	26	1	577	808	224960738	224960506	2.190000e-71	279.0
23	TraesCS4A01G442200	chr3B	88.596	114	12	1	2005	2118	815214051	815213939	1.390000e-28	137.0
24	TraesCS4A01G442200	chr3B	100.000	28	0	0	2079	2106	809409000	809409027	5.000000e-03	52.8
25	TraesCS4A01G442200	chr2D	95.541	157	7	0	315	471	362930969	362930813	4.770000e-63	252.0
26	TraesCS4A01G442200	chr2D	92.941	170	12	0	314	483	87407526	87407357	6.170000e-62	248.0
27	TraesCS4A01G442200	chr4B	92.982	171	12	0	308	478	135218217	135218047	1.710000e-62	250.0
28	TraesCS4A01G442200	chr1D	93.413	167	11	0	311	477	463382070	463381904	6.170000e-62	248.0
29	TraesCS4A01G442200	chr6B	92.442	172	13	0	307	478	720912048	720912219	2.220000e-61	246.0
30	TraesCS4A01G442200	chr1B	92.899	169	12	0	315	483	24349213	24349045	2.220000e-61	246.0
31	TraesCS4A01G442200	chr1B	89.474	114	11	1	2005	2118	427972930	427973042	2.990000e-30	143.0
32	TraesCS4A01G442200	chr3D	94.304	158	9	0	314	471	459077268	459077425	2.870000e-60	243.0
33	TraesCS4A01G442200	chr7B	92.500	80	6	0	2039	2118	529284287	529284366	6.530000e-22	115.0
34	TraesCS4A01G442200	chr2B	88.235	85	10	0	387	471	136175097	136175181	5.080000e-18	102.0
35	TraesCS4A01G442200	chr2B	78.030	132	16	6	155	286	800173028	800172910	1.430000e-08	71.3
36	TraesCS4A01G442200	chr2B	90.385	52	5	0	2429	2480	657470192	657470243	5.150000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G442200	chr4A	710270287	710273168	2881	True	5323.000000	5323	100.000000	1	2882	1	chr4A.!!$R2	2881
1	TraesCS4A01G442200	chr4A	710282141	710285408	3267	True	1246.666667	2300	93.233000	1	2882	3	chr4A.!!$R3	2881
2	TraesCS4A01G442200	chr4A	710675637	710677072	1435	True	739.500000	1201	87.889500	581	1983	2	chr4A.!!$R4	1402
3	TraesCS4A01G442200	chr4A	710693885	710695230	1345	True	717.000000	1166	87.806000	581	1929	2	chr4A.!!$R5	1348
4	TraesCS4A01G442200	chr7D	25895998	25899028	3030	True	1532.500000	2774	89.556000	90	2857	2	chr7D.!!$R2	2767
5	TraesCS4A01G442200	chr7D	26564820	26566205	1385	True	1384.000000	1384	85.137000	581	1929	1	chr7D.!!$R1	1348
6	TraesCS4A01G442200	chr7D	26558407	26560492	2085	True	519.766667	1205	87.425333	146	1985	3	chr7D.!!$R3	1839
7	TraesCS4A01G442200	chr7A	27031258	27032649	1391	True	1362.000000	1362	84.853000	581	1928	1	chr7A.!!$R1	1347
8	TraesCS4A01G442200	chr7A	26821827	26824297	2470	True	945.000000	2041	93.191333	100	2314	3	chr7A.!!$R2	2214
9	TraesCS4A01G442200	chr7A	26976576	26978081	1505	True	743.000000	1210	86.535000	581	1985	2	chr7A.!!$R3	1404

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
74	77	1.000955	AGGGTCGGCTTTAGATATGCG	59.999	52.381	0.0	0.0	0.0	4.73	F
575	652	1.211456	AGGAAGGAAGCCATGGAGAG	58.789	55.000	18.4	0.0	0.0	3.20	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1731	2363	0.036010	CCATGGCCTCCCGTATCATC	60.036	60.0	3.32	0.0	0.0	2.92	R
2472	3169	0.768622	ACGGATTTGAACCCTGGTGA	59.231	50.0	0.00	0.0	0.0	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
30	31	2.863704	GCAAAAATGGTCCAGACACTGC	60.864	50.000	0.00	0.00	0.00	4.40
33	34	1.768684	AATGGTCCAGACACTGCGGT	61.769	55.000	0.00	0.00	0.00	5.68
66	69	2.418197	CGAGATTTGAGGGTCGGCTTTA	60.418	50.000	0.00	0.00	0.00	1.85
69	72	3.456277	AGATTTGAGGGTCGGCTTTAGAT	59.544	43.478	0.00	0.00	0.00	1.98
74	77	1.000955	AGGGTCGGCTTTAGATATGCG	59.999	52.381	0.00	0.00	0.00	4.73
550	620	1.462238	AAGGTGAGGTGAGGCAGGT	60.462	57.895	0.00	0.00	0.00	4.00
575	652	1.211456	AGGAAGGAAGCCATGGAGAG	58.789	55.000	18.40	0.00	0.00	3.20
579	966	2.203126	GAAGCCATGGAGAGCGGG	60.203	66.667	18.40	0.00	0.00	6.13
689	1076	4.385405	AGCTTCGCTCTTGCCGCT	62.385	61.111	0.00	0.00	30.62	5.52
918	1518	6.276091	GCAAAGGATGGATTTTATTGACTCC	58.724	40.000	0.00	0.00	0.00	3.85
964	1596	2.203195	AGGCGCAGTTGAGCAACA	60.203	55.556	10.83	0.00	43.47	3.33
969	1601	1.464608	GCGCAGTTGAGCAACAGATAA	59.535	47.619	14.99	0.00	43.47	1.75
1009	1641	1.658994	GATACCGTCGATGCCCAAAA	58.341	50.000	0.00	0.00	0.00	2.44
1125	1757	3.463585	GCGTCGGGGGTGGTGATA	61.464	66.667	0.00	0.00	0.00	2.15
1220	1852	1.257750	CCACTCCATCTCACGGTCCA	61.258	60.000	0.00	0.00	0.00	4.02
1287	1919	2.922503	TGGAAGGAGCAGGACGCA	60.923	61.111	0.00	0.00	46.13	5.24
1476	2108	4.752879	GCCGCACTACCGCCAGAA	62.753	66.667	0.00	0.00	0.00	3.02
1591	2223	2.214181	CTCTGGGTGGAACTCGTCGG	62.214	65.000	0.00	0.00	43.75	4.79
1608	2240	2.510906	GTGGAGGGCATATGCGGT	59.489	61.111	21.04	10.75	43.26	5.68
1674	2306	1.960763	CTGCCGCTACAAGTGCACA	60.961	57.895	21.04	0.00	0.00	4.57
1690	2322	4.181010	CAGAGTGGGGCATCGGGG	62.181	72.222	0.00	0.00	0.00	5.73
1933	2570	4.515432	GTTTGACAGTCTGAAGCGTTTAC	58.485	43.478	6.91	0.00	0.00	2.01
1945	2582	7.705325	GTCTGAAGCGTTTACTAGGATGAAATA	59.295	37.037	0.00	0.00	0.00	1.40
1952	2589	7.227910	GCGTTTACTAGGATGAAATAAATCCCA	59.772	37.037	0.00	0.00	44.09	4.37
1986	2623	5.904362	AAGTTCCAGTCATATTTTGAGCC	57.096	39.130	0.00	0.00	34.17	4.70
1991	2628	4.873827	TCCAGTCATATTTTGAGCCGTTAC	59.126	41.667	0.00	0.00	34.17	2.50
1993	2630	6.046593	CCAGTCATATTTTGAGCCGTTACTA	58.953	40.000	0.00	0.00	34.17	1.82
2002	2666	3.717707	TGAGCCGTTACTAGAATGATGC	58.282	45.455	0.00	0.00	0.00	3.91
2003	2667	3.132111	TGAGCCGTTACTAGAATGATGCA	59.868	43.478	0.00	0.00	0.00	3.96
2107	2771	2.044806	GACGCCCTATGCACCTGGAT	62.045	60.000	0.00	0.00	41.33	3.41
2138	2802	4.744136	AGCATTATTCACATCTGCATCG	57.256	40.909	0.00	0.00	35.32	3.84
2141	2805	3.950087	TTATTCACATCTGCATCGCAC	57.050	42.857	0.00	0.00	33.79	5.34
2142	2806	1.741528	ATTCACATCTGCATCGCACA	58.258	45.000	0.00	0.00	33.79	4.57
2143	2807	1.741528	TTCACATCTGCATCGCACAT	58.258	45.000	0.00	0.00	33.79	3.21
2158	2824	3.005791	TCGCACATCTTCTCAGAAGTTGA	59.994	43.478	25.92	5.04	28.04	3.18
2169	2835	3.713764	CTCAGAAGTTGACCCCTATGGAT	59.286	47.826	0.00	0.00	38.00	3.41
2170	2836	4.111577	TCAGAAGTTGACCCCTATGGATT	58.888	43.478	0.00	0.00	38.00	3.01
2172	2838	3.852578	AGAAGTTGACCCCTATGGATTGT	59.147	43.478	0.00	0.00	38.00	2.71
2184	2850	7.073725	ACCCCTATGGATTGTTAACATCATAGT	59.926	37.037	28.55	19.47	38.00	2.12
2186	2852	9.658799	CCCTATGGATTGTTAACATCATAGTAG	57.341	37.037	28.55	22.36	34.15	2.57
2248	2914	1.648467	GAGTGAGGATTTGGCGCACC	61.648	60.000	10.83	4.14	0.00	5.01
2297	2963	1.152881	GGACCTGCACCCCATGATC	60.153	63.158	0.00	0.00	0.00	2.92
2336	3033	9.168451	TGTGCTCATTTTATTCGGTTAAAGATA	57.832	29.630	0.00	0.00	0.00	1.98
2385	3082	5.107133	GCTTGTATTTCTTGTAGACCGCTA	58.893	41.667	0.00	0.00	0.00	4.26
2417	3114	9.832445	AATACATTATACATCGAGTTGGAAAGT	57.168	29.630	0.00	0.00	0.00	2.66
2423	3120	5.880054	ACATCGAGTTGGAAAGTAAATGG	57.120	39.130	0.00	0.00	29.91	3.16
2425	3122	4.015872	TCGAGTTGGAAAGTAAATGGCT	57.984	40.909	0.00	0.00	0.00	4.75
2427	3124	5.175859	TCGAGTTGGAAAGTAAATGGCTAG	58.824	41.667	0.00	0.00	0.00	3.42
2467	3164	5.205056	TGTTTAGGTTCTTTGTGGTGGAAT	58.795	37.500	0.00	0.00	0.00	3.01
2472	3169	3.636764	GGTTCTTTGTGGTGGAATCAGTT	59.363	43.478	0.00	0.00	0.00	3.16
2503	3200	1.791785	CAAATCCGTGTGCGCATTTTT	59.208	42.857	15.91	4.92	36.45	1.94
2529	3226	9.445878	TTTGAATTTATTTCATGCTATTTGGCA	57.554	25.926	0.00	0.00	43.73	4.92
2531	3228	9.445878	TGAATTTATTTCATGCTATTTGGCAAA	57.554	25.926	16.01	16.01	39.44	3.68
2546	3243	5.559148	TTGGCAAAATTAATTCACTGGGT	57.441	34.783	0.00	0.00	0.00	4.51
2561	3258	3.377172	CACTGGGTGAAGACTTTTTCGTT	59.623	43.478	0.00	0.00	35.23	3.85
2575	3272	2.654877	CGTTGACTACGGGTGCCT	59.345	61.111	1.23	0.00	46.42	4.75
2576	3273	1.736645	CGTTGACTACGGGTGCCTG	60.737	63.158	1.23	0.00	46.42	4.85
2577	3274	1.370064	GTTGACTACGGGTGCCTGT	59.630	57.895	7.91	7.91	39.18	4.00
2587	3305	1.286880	GGTGCCTGTGATGTTGTGC	59.713	57.895	0.00	0.00	0.00	4.57
2589	3307	1.152798	TGCCTGTGATGTTGTGCCA	60.153	52.632	0.00	0.00	0.00	4.92
2601	3319	6.254157	GTGATGTTGTGCCAGCTTAATATTTG	59.746	38.462	0.00	0.00	0.00	2.32
2644	3369	4.383649	GCATGCATGCGTTTATAGAAATGG	59.616	41.667	33.99	0.00	44.67	3.16
2659	3384	9.634021	TTATAGAAATGGGTGTATGTGCATTTA	57.366	29.630	0.00	0.00	0.00	1.40
2678	3403	7.657354	TGCATTTATGAGCGTCTCTAATTGTAT	59.343	33.333	8.07	0.00	0.00	2.29
2728	3456	0.038310	GTTTAAGCAGGGGTGGAGCT	59.962	55.000	0.00	0.00	0.00	4.09
2729	3457	0.038166	TTTAAGCAGGGGTGGAGCTG	59.962	55.000	0.00	0.00	0.00	4.24
2753	3481	2.038426	TGGATCACGATCAACCTTGTGT	59.962	45.455	9.17	0.00	39.54	3.72
2758	3486	2.032894	CACGATCAACCTTGTGTCACAC	60.033	50.000	4.80	0.00	34.56	3.82
2763	3491	1.870402	CAACCTTGTGTCACACGCATA	59.130	47.619	4.80	0.00	38.53	3.14
2764	3492	1.795768	ACCTTGTGTCACACGCATAG	58.204	50.000	4.80	0.00	38.53	2.23
2801	3534	7.681939	AAACACGCAGGATAGATTTTCTTTA	57.318	32.000	0.00	0.00	0.00	1.85
2858	3609	1.371183	CACGGACACATCACAGGGT	59.629	57.895	0.00	0.00	0.00	4.34
2872	3623	5.531122	TCACAGGGTATATGTCTTGCTAC	57.469	43.478	0.00	0.00	0.00	3.58
2879	3630	5.048224	GGGTATATGTCTTGCTACTAGCGAA	60.048	44.000	3.59	0.00	46.26	4.70

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
9	10	2.863704	GCAGTGTCTGGACCATTTTTGC	60.864	50.000	0.00	0.00	31.21	3.68
11	12	1.608590	CGCAGTGTCTGGACCATTTTT	59.391	47.619	0.00	0.00	31.21	1.94
16	17	2.842462	ACCGCAGTGTCTGGACCA	60.842	61.111	0.00	0.00	31.21	4.02
56	59	2.150397	ACGCATATCTAAAGCCGACC	57.850	50.000	0.00	0.00	0.00	4.79
66	69	9.413048	GCTATTCTAAACTCTAAACGCATATCT	57.587	33.333	0.00	0.00	0.00	1.98
69	72	6.639686	CGGCTATTCTAAACTCTAAACGCATA	59.360	38.462	0.00	0.00	0.00	3.14
74	77	7.838771	TTTCCGGCTATTCTAAACTCTAAAC	57.161	36.000	0.00	0.00	0.00	2.01
550	620	1.134401	CATGGCTTCCTTCCTAGCGAA	60.134	52.381	0.00	0.00	38.28	4.70
575	652	3.991536	GACGAGCTCCTTGACCCGC	62.992	68.421	8.47	0.00	0.00	6.13
579	966	0.039437	TTGACGACGAGCTCCTTGAC	60.039	55.000	8.47	1.87	0.00	3.18
715	1102	2.523168	TGGCGGTCCAGAGTGTGA	60.523	61.111	0.00	0.00	37.47	3.58
740	1127	1.009829	GGCAGTAGCTCATGAAACCG	58.990	55.000	0.00	0.00	41.70	4.44
901	1501	3.897239	TGCCGGAGTCAATAAAATCCAT	58.103	40.909	5.05	0.00	0.00	3.41
904	1504	4.695217	TGTTGCCGGAGTCAATAAAATC	57.305	40.909	5.05	0.00	0.00	2.17
964	1596	7.374272	CAGTCTATGATCGTGTCCAATTATCT	58.626	38.462	0.00	0.00	0.00	1.98
969	1601	3.960755	TCCAGTCTATGATCGTGTCCAAT	59.039	43.478	0.00	0.00	0.00	3.16
1125	1757	1.371558	GAGCTCGTCCCAGGTGTTT	59.628	57.895	0.00	0.00	0.00	2.83
1220	1852	3.862642	GCTCTCCTTCGAGACATTGTTGT	60.863	47.826	0.00	0.00	40.34	3.32
1591	2223	1.893808	CACCGCATATGCCCTCCAC	60.894	63.158	21.77	0.00	37.91	4.02
1674	2306	4.741239	ACCCCGATGCCCCACTCT	62.741	66.667	0.00	0.00	0.00	3.24
1690	2322	1.153628	CGTCGTCCCCAATCTCCAC	60.154	63.158	0.00	0.00	0.00	4.02
1731	2363	0.036010	CCATGGCCTCCCGTATCATC	60.036	60.000	3.32	0.00	0.00	2.92
1933	2570	7.693132	TGGAGATGGGATTTATTTCATCCTAG	58.307	38.462	0.00	0.00	40.32	3.02
1945	2582	6.070596	GGAACTTTGAAATGGAGATGGGATTT	60.071	38.462	0.00	0.00	0.00	2.17
1952	2589	5.634118	TGACTGGAACTTTGAAATGGAGAT	58.366	37.500	0.00	0.00	0.00	2.75
2012	2676	8.559536	GCTCCTCATTTTTCGTGATCATTAATA	58.440	33.333	0.00	0.00	0.00	0.98
2107	2771	5.692115	TGTGAATAATGCTACTTCCTCCA	57.308	39.130	0.00	0.00	0.00	3.86
2138	2802	3.434984	GGTCAACTTCTGAGAAGATGTGC	59.565	47.826	27.49	20.06	33.60	4.57
2141	2805	3.262915	AGGGGTCAACTTCTGAGAAGATG	59.737	47.826	27.49	24.52	33.60	2.90
2142	2806	3.525862	AGGGGTCAACTTCTGAGAAGAT	58.474	45.455	27.49	14.17	33.60	2.40
2143	2807	2.977808	AGGGGTCAACTTCTGAGAAGA	58.022	47.619	27.49	3.83	33.60	2.87
2158	2824	5.725551	TGATGTTAACAATCCATAGGGGT	57.274	39.130	13.23	0.00	38.11	4.95
2169	2835	9.489084	GATGGCATACTACTATGATGTTAACAA	57.511	33.333	13.23	0.00	32.66	2.83
2170	2836	8.870116	AGATGGCATACTACTATGATGTTAACA	58.130	33.333	11.41	11.41	32.66	2.41
2184	2850	4.445735	GGCCCAAAAGTAGATGGCATACTA	60.446	45.833	0.00	1.20	43.96	1.82
2186	2852	2.623416	GGCCCAAAAGTAGATGGCATAC	59.377	50.000	0.00	0.00	43.96	2.39
2310	2976	7.441890	TCTTTAACCGAATAAAATGAGCACA	57.558	32.000	0.00	0.00	0.00	4.57
2322	2988	8.908903	TGCATTAACCAATATCTTTAACCGAAT	58.091	29.630	0.00	0.00	0.00	3.34
2336	3033	7.275341	CGTGTACAATCATTTGCATTAACCAAT	59.725	33.333	0.00	0.00	36.22	3.16
2385	3082	9.261180	CAACTCGATGTATAATGTATTGGTTCT	57.739	33.333	0.00	0.00	0.00	3.01
2434	3131	7.335422	CACAAAGAACCTAAACATCTGAGCTAT	59.665	37.037	0.00	0.00	0.00	2.97
2446	3143	5.450453	TGATTCCACCACAAAGAACCTAAA	58.550	37.500	0.00	0.00	0.00	1.85
2467	3164	3.486383	GATTTGAACCCTGGTGAACTGA	58.514	45.455	0.00	0.00	0.00	3.41
2472	3169	0.768622	ACGGATTTGAACCCTGGTGA	59.231	50.000	0.00	0.00	0.00	4.02
2518	3215	7.333921	CCAGTGAATTAATTTTGCCAAATAGCA	59.666	33.333	1.43	0.00	42.17	3.49
2525	3222	4.590647	TCACCCAGTGAATTAATTTTGCCA	59.409	37.500	1.43	0.00	39.78	4.92
2561	3258	0.902984	ATCACAGGCACCCGTAGTCA	60.903	55.000	0.00	0.00	0.00	3.41
2569	3266	1.286880	GCACAACATCACAGGCACC	59.713	57.895	0.00	0.00	0.00	5.01
2571	3268	1.152798	TGGCACAACATCACAGGCA	60.153	52.632	0.00	0.00	31.92	4.75
2572	3269	1.582968	CTGGCACAACATCACAGGC	59.417	57.895	0.00	0.00	38.70	4.85
2573	3270	0.892358	AGCTGGCACAACATCACAGG	60.892	55.000	0.00	0.00	38.70	4.00
2575	3272	2.268762	TAAGCTGGCACAACATCACA	57.731	45.000	0.00	0.00	38.70	3.58
2576	3273	3.855689	ATTAAGCTGGCACAACATCAC	57.144	42.857	0.00	0.00	38.70	3.06
2577	3274	6.331845	CAAATATTAAGCTGGCACAACATCA	58.668	36.000	0.00	0.00	38.70	3.07
2587	3305	4.210331	AGCACCTCCAAATATTAAGCTGG	58.790	43.478	0.00	0.00	0.00	4.85
2589	3307	5.116084	TGAGCACCTCCAAATATTAAGCT	57.884	39.130	0.00	0.00	0.00	3.74
2601	3319	2.551071	GCATACCCTTATGAGCACCTCC	60.551	54.545	0.00	0.00	37.86	4.30
2630	3355	6.037720	TGCACATACACCCATTTCTATAAACG	59.962	38.462	0.00	0.00	0.00	3.60
2634	3359	9.806448	ATAAATGCACATACACCCATTTCTATA	57.194	29.630	0.00	0.00	38.45	1.31
2639	3364	6.683610	GCTCATAAATGCACATACACCCATTT	60.684	38.462	0.00	0.00	40.07	2.32
2644	3369	3.312421	ACGCTCATAAATGCACATACACC	59.688	43.478	0.00	0.00	0.00	4.16
2728	3456	3.912496	AGGTTGATCGTGATCCATTCA	57.088	42.857	7.36	0.00	37.02	2.57
2729	3457	3.941483	ACAAGGTTGATCGTGATCCATTC	59.059	43.478	7.36	0.00	37.02	2.67
2819	3556	3.181443	TGCGACTATCATCACTCCTAGGA	60.181	47.826	11.98	11.98	0.00	2.94
2820	3557	3.057876	GTGCGACTATCATCACTCCTAGG	60.058	52.174	0.82	0.82	0.00	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.