Multiple sequence alignment - TraesCS4A01G442100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G442100 chr4A 100.000 3155 0 0 1 3155 710245619 710242465 0.000000e+00 5827.0
1 TraesCS4A01G442100 chr4A 84.795 171 23 3 2953 3123 647262502 647262669 5.410000e-38 169.0
2 TraesCS4A01G442100 chr4A 82.941 170 21 8 2955 3121 736405934 736405770 2.540000e-31 147.0
3 TraesCS4A01G442100 chr7A 86.566 2650 146 95 621 3155 26770259 26767705 0.000000e+00 2728.0
4 TraesCS4A01G442100 chr7A 80.388 464 32 27 121 532 26774291 26773835 6.620000e-77 298.0
5 TraesCS4A01G442100 chr7A 82.081 173 24 7 2953 3123 734692069 734692236 1.180000e-29 141.0
6 TraesCS4A01G442100 chr7D 87.500 2248 130 69 1 2163 25820297 25818116 0.000000e+00 2455.0
7 TraesCS4A01G442100 chr7D 88.872 674 36 24 2287 2954 25818034 25817394 0.000000e+00 793.0
8 TraesCS4A01G442100 chr7D 82.759 203 31 3 2956 3154 25817331 25817129 8.990000e-41 178.0
9 TraesCS4A01G442100 chr7D 83.237 173 24 4 2953 3123 568379675 568379506 1.520000e-33 154.0
10 TraesCS4A01G442100 chr7D 80.874 183 25 6 2953 3129 579544943 579544765 5.490000e-28 135.0
11 TraesCS4A01G442100 chr5A 83.721 172 22 5 2953 3121 547167689 547167857 1.170000e-34 158.0
12 TraesCS4A01G442100 chr5A 87.097 62 8 0 1817 1878 524011421 524011360 1.570000e-08 71.3
13 TraesCS4A01G442100 chr1D 84.768 151 17 6 2953 3100 314684158 314684305 2.540000e-31 147.0
14 TraesCS4A01G442100 chr2D 82.558 172 22 5 2953 3121 638774895 638774729 9.120000e-31 145.0
15 TraesCS4A01G442100 chr3D 91.525 59 1 3 1162 1218 498356117 498356061 9.380000e-11 78.7
16 TraesCS4A01G442100 chr3D 89.831 59 3 2 1162 1217 498423572 498423514 4.370000e-09 73.1
17 TraesCS4A01G442100 chr3D 97.436 39 1 0 1162 1200 498484137 498484099 2.030000e-07 67.6
18 TraesCS4A01G442100 chr5B 88.333 60 7 0 1819 1878 495828086 495828027 4.370000e-09 73.1
19 TraesCS4A01G442100 chr5D 85.484 62 9 0 1817 1878 412248077 412248016 7.300000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G442100 chr4A 710242465 710245619 3154 True 5827 5827 100.000 1 3155 1 chr4A.!!$R1 3154
1 TraesCS4A01G442100 chr7A 26767705 26774291 6586 True 1513 2728 83.477 121 3155 2 chr7A.!!$R1 3034
2 TraesCS4A01G442100 chr7D 25817129 25820297 3168 True 1142 2455 86.377 1 3154 3 chr7D.!!$R3 3153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 612 0.250467 CCACACCTACAAGCAGCAGT 60.250 55.000 0.00 0.00 0.00 4.40 F
556 616 0.469917 ACCTACAAGCAGCAGTGTGT 59.530 50.000 11.14 4.55 0.00 3.72 F
588 4099 1.016653 GCGAGCTTCCTTCCACAGTC 61.017 60.000 0.00 0.00 0.00 3.51 F
1631 5221 1.002011 GAGGGGTTGGGAACAGAGC 60.002 63.158 0.00 0.00 44.54 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 5206 0.038166 TCATGCTCTGTTCCCAACCC 59.962 55.0 0.0 0.0 0.0 4.11 R
1620 5210 0.251354 GCTCTCATGCTCTGTTCCCA 59.749 55.0 0.0 0.0 0.0 4.37 R
1634 5224 0.534873 GGGTCAACTCCTCTGCTCTC 59.465 60.0 0.0 0.0 0.0 3.20 R
3007 6744 0.179176 TGCACACAGTCAAACAACGC 60.179 50.0 0.0 0.0 0.0 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.266510 ACAAGTCAAGTCAACAGAGCA 57.733 42.857 0.00 0.00 0.00 4.26
21 22 2.939103 ACAAGTCAAGTCAACAGAGCAC 59.061 45.455 0.00 0.00 0.00 4.40
22 23 2.938451 CAAGTCAAGTCAACAGAGCACA 59.062 45.455 0.00 0.00 0.00 4.57
23 24 2.831333 AGTCAAGTCAACAGAGCACAG 58.169 47.619 0.00 0.00 0.00 3.66
24 25 1.262683 GTCAAGTCAACAGAGCACAGC 59.737 52.381 0.00 0.00 0.00 4.40
25 26 1.134431 TCAAGTCAACAGAGCACAGCA 60.134 47.619 0.00 0.00 0.00 4.41
40 41 3.450578 CACAGCACAGCAATTTTGTTCT 58.549 40.909 0.00 0.00 0.00 3.01
42 43 4.442073 CACAGCACAGCAATTTTGTTCTAC 59.558 41.667 0.00 0.00 0.00 2.59
50 51 3.740832 GCAATTTTGTTCTACCAAGTGGC 59.259 43.478 0.00 0.00 39.32 5.01
57 58 0.983467 TCTACCAAGTGGCTGCATGA 59.017 50.000 0.50 0.00 39.32 3.07
58 59 1.561076 TCTACCAAGTGGCTGCATGAT 59.439 47.619 0.50 0.00 39.32 2.45
59 60 1.674441 CTACCAAGTGGCTGCATGATG 59.326 52.381 0.50 0.00 39.32 3.07
60 61 1.141019 CCAAGTGGCTGCATGATGC 59.859 57.895 11.12 11.12 45.29 3.91
61 62 4.853668 TACCAAGTGGCTGCATGATGCA 62.854 50.000 20.09 20.09 45.38 3.96
114 115 2.695666 AGTGAGTGAGTATTCCCATCCG 59.304 50.000 0.00 0.00 0.00 4.18
116 117 3.104512 TGAGTGAGTATTCCCATCCGTT 58.895 45.455 0.00 0.00 0.00 4.44
117 118 3.118775 TGAGTGAGTATTCCCATCCGTTG 60.119 47.826 0.00 0.00 0.00 4.10
173 175 3.067106 CCCGTCATCATTCTTAATCCCG 58.933 50.000 0.00 0.00 0.00 5.14
196 198 1.378531 GCATGTGATCACCCGCTTAA 58.621 50.000 22.85 2.70 0.00 1.85
197 199 1.064060 GCATGTGATCACCCGCTTAAC 59.936 52.381 22.85 0.75 0.00 2.01
198 200 1.670811 CATGTGATCACCCGCTTAACC 59.329 52.381 22.85 0.00 0.00 2.85
199 201 0.687920 TGTGATCACCCGCTTAACCA 59.312 50.000 22.85 0.00 0.00 3.67
200 202 1.084289 GTGATCACCCGCTTAACCAC 58.916 55.000 15.31 0.00 0.00 4.16
214 216 0.679640 AACCACACCACACCACACTG 60.680 55.000 0.00 0.00 0.00 3.66
219 221 1.451927 ACCACACCACACTGCACAG 60.452 57.895 0.00 0.00 0.00 3.66
276 295 1.925185 GGTCGTTACATCGCTTCTTCC 59.075 52.381 0.00 0.00 0.00 3.46
357 399 2.628178 CGTTATGTCAGGCTAGGATCCA 59.372 50.000 15.82 0.00 0.00 3.41
358 400 3.553096 CGTTATGTCAGGCTAGGATCCAC 60.553 52.174 15.82 1.48 0.00 4.02
359 401 2.180946 ATGTCAGGCTAGGATCCACA 57.819 50.000 15.82 7.94 0.00 4.17
360 402 2.180946 TGTCAGGCTAGGATCCACAT 57.819 50.000 15.82 0.00 0.00 3.21
361 403 2.042464 TGTCAGGCTAGGATCCACATC 58.958 52.381 15.82 0.62 0.00 3.06
397 439 1.248101 CCAATCGGAAAACGCCCCTT 61.248 55.000 0.00 0.00 43.86 3.95
470 530 5.700832 TGCAGACACGAATAAGAACAAGAAT 59.299 36.000 0.00 0.00 0.00 2.40
488 548 7.820648 ACAAGAATGATAAAGCGAGAAAATGT 58.179 30.769 0.00 0.00 0.00 2.71
537 597 3.080158 ATTGCCACCCACACCCACA 62.080 57.895 0.00 0.00 0.00 4.17
544 604 0.989212 ACCCACACCCACACCTACAA 60.989 55.000 0.00 0.00 0.00 2.41
545 605 0.250727 CCCACACCCACACCTACAAG 60.251 60.000 0.00 0.00 0.00 3.16
552 612 0.250467 CCACACCTACAAGCAGCAGT 60.250 55.000 0.00 0.00 0.00 4.40
556 616 0.469917 ACCTACAAGCAGCAGTGTGT 59.530 50.000 11.14 4.55 0.00 3.72
561 4072 2.827051 AAGCAGCAGTGTGTGTGCG 61.827 57.895 0.00 0.00 46.06 5.34
567 4078 1.559814 CAGTGTGTGTGCGTCTTCG 59.440 57.895 0.00 0.00 40.37 3.79
584 4095 2.436824 GGGCGAGCTTCCTTCCAC 60.437 66.667 6.01 0.00 0.00 4.02
588 4099 1.016653 GCGAGCTTCCTTCCACAGTC 61.017 60.000 0.00 0.00 0.00 3.51
593 4106 1.284982 CTTCCTTCCACAGTCGCACG 61.285 60.000 0.00 0.00 0.00 5.34
616 4129 5.292101 CGGCAACAAACCAAAAGTTGAAATA 59.708 36.000 8.54 0.00 43.93 1.40
618 4131 6.092807 GGCAACAAACCAAAAGTTGAAATACA 59.907 34.615 8.54 0.00 43.93 2.29
619 4132 7.361286 GGCAACAAACCAAAAGTTGAAATACAA 60.361 33.333 8.54 0.00 43.93 2.41
620 4133 8.180920 GCAACAAACCAAAAGTTGAAATACAAT 58.819 29.630 8.54 0.00 43.93 2.71
621 4134 9.488124 CAACAAACCAAAAGTTGAAATACAATG 57.512 29.630 0.00 0.00 43.93 2.82
622 4135 8.785329 ACAAACCAAAAGTTGAAATACAATGT 57.215 26.923 0.00 0.00 39.19 2.71
623 4136 8.663911 ACAAACCAAAAGTTGAAATACAATGTG 58.336 29.630 0.00 0.00 39.19 3.21
624 4137 8.663911 CAAACCAAAAGTTGAAATACAATGTGT 58.336 29.630 0.00 0.00 39.19 3.72
626 4139 9.877178 AACCAAAAGTTGAAATACAATGTGTAA 57.123 25.926 0.00 0.00 40.76 2.41
632 4180 8.970691 AGTTGAAATACAATGTGTAATTCTGC 57.029 30.769 14.22 8.83 41.15 4.26
637 4185 4.724074 ACAATGTGTAATTCTGCCATGG 57.276 40.909 7.63 7.63 0.00 3.66
652 4200 5.716228 TCTGCCATGGTGATTTGATTAGTTT 59.284 36.000 14.67 0.00 0.00 2.66
655 4203 7.901029 TGCCATGGTGATTTGATTAGTTTTTA 58.099 30.769 14.67 0.00 0.00 1.52
656 4204 8.034215 TGCCATGGTGATTTGATTAGTTTTTAG 58.966 33.333 14.67 0.00 0.00 1.85
658 4206 9.927668 CCATGGTGATTTGATTAGTTTTTAGTT 57.072 29.630 2.57 0.00 0.00 2.24
668 4216 7.592938 TGATTAGTTTTTAGTTGTGGCATCAG 58.407 34.615 0.00 0.00 0.00 2.90
681 4229 6.698008 TGTGGCATCAGACAATAATTTAGG 57.302 37.500 0.00 0.00 31.85 2.69
687 4235 7.358830 GCATCAGACAATAATTTAGGCTCTTC 58.641 38.462 0.00 0.00 0.00 2.87
705 4253 5.106555 GCTCTTCTGATTTCGGTTTTGATGA 60.107 40.000 0.00 0.00 0.00 2.92
706 4254 6.404074 GCTCTTCTGATTTCGGTTTTGATGAT 60.404 38.462 0.00 0.00 0.00 2.45
707 4255 7.201644 GCTCTTCTGATTTCGGTTTTGATGATA 60.202 37.037 0.00 0.00 0.00 2.15
803 4351 1.070289 CCGCTAAATACACTCCCTCCC 59.930 57.143 0.00 0.00 0.00 4.30
804 4352 2.040178 CGCTAAATACACTCCCTCCCT 58.960 52.381 0.00 0.00 0.00 4.20
805 4353 2.036089 CGCTAAATACACTCCCTCCCTC 59.964 54.545 0.00 0.00 0.00 4.30
806 4354 2.369203 GCTAAATACACTCCCTCCCTCC 59.631 54.545 0.00 0.00 0.00 4.30
849 4399 5.192321 TCCATTCCATCCATCTTCTTCTTCA 59.808 40.000 0.00 0.00 0.00 3.02
896 4478 2.672996 GAGGCTTGCCGCTTTGGA 60.673 61.111 8.11 0.00 42.00 3.53
1431 5021 4.530857 CTCGACATGGCGGGGGTC 62.531 72.222 23.19 0.00 0.00 4.46
1588 5178 2.038269 CCCAAGGTACGCGCATTGT 61.038 57.895 5.73 0.00 0.00 2.71
1590 5180 1.423845 CAAGGTACGCGCATTGTCC 59.576 57.895 5.73 1.86 0.00 4.02
1627 5217 3.253838 CGGGAGGGGTTGGGAACA 61.254 66.667 0.00 0.00 39.83 3.18
1628 5218 2.763902 GGGAGGGGTTGGGAACAG 59.236 66.667 0.00 0.00 44.54 3.16
1629 5219 1.850755 GGGAGGGGTTGGGAACAGA 60.851 63.158 0.00 0.00 44.54 3.41
1630 5220 1.685820 GGAGGGGTTGGGAACAGAG 59.314 63.158 0.00 0.00 44.54 3.35
1631 5221 1.002011 GAGGGGTTGGGAACAGAGC 60.002 63.158 0.00 0.00 44.54 4.09
1632 5222 1.774217 AGGGGTTGGGAACAGAGCA 60.774 57.895 0.00 0.00 44.54 4.26
1633 5223 1.142688 AGGGGTTGGGAACAGAGCAT 61.143 55.000 0.00 0.00 44.54 3.79
1634 5224 0.967380 GGGGTTGGGAACAGAGCATG 60.967 60.000 0.00 0.00 44.54 4.06
1667 5257 3.319689 AGTTGACCCGTGGTTAATTTTGG 59.680 43.478 4.13 0.00 35.25 3.28
1716 5306 2.757077 CGCAAGGGGGAGAAGGTT 59.243 61.111 0.00 0.00 0.00 3.50
1981 5595 3.041940 GGCAACGACACCCGACAG 61.042 66.667 0.00 0.00 41.76 3.51
1986 5600 3.374402 CGACACCCGACAGCTCCT 61.374 66.667 0.00 0.00 41.76 3.69
1987 5601 2.574399 GACACCCGACAGCTCCTC 59.426 66.667 0.00 0.00 0.00 3.71
1988 5602 2.997897 ACACCCGACAGCTCCTCC 60.998 66.667 0.00 0.00 0.00 4.30
1989 5603 4.135153 CACCCGACAGCTCCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
1992 5606 4.504916 CCGACAGCTCCTCCGCAG 62.505 72.222 0.00 0.00 0.00 5.18
2049 5663 2.875485 GACCTGCTGTCGTCGCTA 59.125 61.111 0.00 0.00 33.49 4.26
2052 5666 2.566529 CTGCTGTCGTCGCTACCA 59.433 61.111 0.00 0.00 0.00 3.25
2058 5672 1.288127 GTCGTCGCTACCAACCACT 59.712 57.895 0.00 0.00 0.00 4.00
2072 5686 0.612453 ACCACTTCGTCCTCCTCCTC 60.612 60.000 0.00 0.00 0.00 3.71
2073 5687 1.324005 CCACTTCGTCCTCCTCCTCC 61.324 65.000 0.00 0.00 0.00 4.30
2074 5688 0.612174 CACTTCGTCCTCCTCCTCCA 60.612 60.000 0.00 0.00 0.00 3.86
2191 5805 2.892640 CGCAATCCGGACCAGAGA 59.107 61.111 6.12 0.00 0.00 3.10
2192 5806 1.218047 CGCAATCCGGACCAGAGAA 59.782 57.895 6.12 0.00 0.00 2.87
2193 5807 0.179073 CGCAATCCGGACCAGAGAAT 60.179 55.000 6.12 0.00 0.00 2.40
2194 5808 1.587547 GCAATCCGGACCAGAGAATC 58.412 55.000 6.12 0.00 0.00 2.52
2195 5809 1.134401 GCAATCCGGACCAGAGAATCA 60.134 52.381 6.12 0.00 37.82 2.57
2197 5811 3.609853 CAATCCGGACCAGAGAATCAAA 58.390 45.455 6.12 0.00 37.82 2.69
2199 5813 4.510167 ATCCGGACCAGAGAATCAAAAT 57.490 40.909 6.12 0.00 37.82 1.82
2201 5815 2.098117 CCGGACCAGAGAATCAAAATGC 59.902 50.000 0.00 0.00 37.82 3.56
2202 5816 2.749076 CGGACCAGAGAATCAAAATGCA 59.251 45.455 0.00 0.00 37.82 3.96
2203 5817 3.191162 CGGACCAGAGAATCAAAATGCAA 59.809 43.478 0.00 0.00 37.82 4.08
2204 5818 4.321156 CGGACCAGAGAATCAAAATGCAAA 60.321 41.667 0.00 0.00 37.82 3.68
2205 5819 4.925646 GGACCAGAGAATCAAAATGCAAAC 59.074 41.667 0.00 0.00 37.82 2.93
2206 5820 5.509501 GGACCAGAGAATCAAAATGCAAACA 60.510 40.000 0.00 0.00 37.82 2.83
2207 5821 6.105397 ACCAGAGAATCAAAATGCAAACAT 57.895 33.333 0.00 0.00 37.82 2.71
2208 5822 7.230849 ACCAGAGAATCAAAATGCAAACATA 57.769 32.000 0.00 0.00 37.82 2.29
2209 5823 7.844009 ACCAGAGAATCAAAATGCAAACATAT 58.156 30.769 0.00 0.00 37.82 1.78
2210 5824 8.316214 ACCAGAGAATCAAAATGCAAACATATT 58.684 29.630 0.00 0.00 37.82 1.28
2211 5825 8.814235 CCAGAGAATCAAAATGCAAACATATTC 58.186 33.333 0.00 0.00 37.82 1.75
2212 5826 8.814235 CAGAGAATCAAAATGCAAACATATTCC 58.186 33.333 0.00 0.00 37.82 3.01
2216 5830 5.649557 TCAAAATGCAAACATATTCCCTCG 58.350 37.500 0.00 0.00 34.62 4.63
2291 5918 6.295745 CCATGTCCTGATTAGCTCATCATACT 60.296 42.308 10.93 1.97 32.59 2.12
2314 5941 2.158900 CCGCCAAGTCCTAGTTCATCAT 60.159 50.000 0.00 0.00 0.00 2.45
2382 6009 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2427 6054 8.032952 TGTCTGATACTGCTACAAATTCTTTG 57.967 34.615 0.00 0.00 45.95 2.77
2472 6099 0.611714 GTCGGTCAAAAGCTAGGGGA 59.388 55.000 0.00 0.00 0.00 4.81
2492 6129 7.836842 AGGGGAATGTAAAATGTAATGTGTTC 58.163 34.615 0.00 0.00 0.00 3.18
2494 6131 7.759433 GGGGAATGTAAAATGTAATGTGTTCAG 59.241 37.037 0.00 0.00 0.00 3.02
2495 6132 8.303876 GGGAATGTAAAATGTAATGTGTTCAGT 58.696 33.333 0.00 0.00 0.00 3.41
2496 6133 9.691362 GGAATGTAAAATGTAATGTGTTCAGTT 57.309 29.630 0.00 0.00 0.00 3.16
2498 6135 9.474920 AATGTAAAATGTAATGTGTTCAGTTGG 57.525 29.630 0.00 0.00 0.00 3.77
2527 6164 6.928520 AGATTGGGAAATAAGTCAAAGCTTG 58.071 36.000 0.00 0.00 0.00 4.01
2534 6171 6.239036 GGAAATAAGTCAAAGCTTGGAGTTGT 60.239 38.462 27.51 20.77 0.00 3.32
2594 6231 0.673333 TACTGGATGCCACTGTTGCG 60.673 55.000 0.00 0.00 0.00 4.85
2605 6242 2.858729 CTGTTGCGCAGTTGTTGAC 58.141 52.632 11.31 4.44 40.27 3.18
2655 6309 7.065803 TGGACGGACTTTTCATCTCATTATTTC 59.934 37.037 0.00 0.00 0.00 2.17
2665 6319 6.558009 TCATCTCATTATTTCTTGCTGTTGC 58.442 36.000 0.00 0.00 40.20 4.17
2708 6371 4.713792 ACACCTCCAAAGATCTGTTTCT 57.286 40.909 0.00 0.00 0.00 2.52
2781 6444 5.500234 CCTATCTGTCAGGTTTTGATTCCA 58.500 41.667 0.00 0.00 38.29 3.53
2783 6446 6.261826 CCTATCTGTCAGGTTTTGATTCCATC 59.738 42.308 0.00 0.00 38.29 3.51
2790 6453 3.593328 AGGTTTTGATTCCATCCTCCTCA 59.407 43.478 0.00 0.00 0.00 3.86
2791 6454 4.231426 AGGTTTTGATTCCATCCTCCTCAT 59.769 41.667 0.00 0.00 0.00 2.90
2792 6455 4.958581 GGTTTTGATTCCATCCTCCTCATT 59.041 41.667 0.00 0.00 0.00 2.57
2793 6456 5.068329 GGTTTTGATTCCATCCTCCTCATTC 59.932 44.000 0.00 0.00 0.00 2.67
2794 6457 5.455392 TTTGATTCCATCCTCCTCATTCA 57.545 39.130 0.00 0.00 0.00 2.57
2795 6458 5.658198 TTGATTCCATCCTCCTCATTCAT 57.342 39.130 0.00 0.00 0.00 2.57
2807 6470 4.458397 TCCTCATTCATTCATTCAGAGCC 58.542 43.478 0.00 0.00 0.00 4.70
2810 6473 4.124970 TCATTCATTCATTCAGAGCCGAG 58.875 43.478 0.00 0.00 0.00 4.63
2895 6570 4.200283 GCTCACTCCCTCGCCTCG 62.200 72.222 0.00 0.00 0.00 4.63
2914 6589 1.542108 CGCCTCTCCTTCCATTCCATC 60.542 57.143 0.00 0.00 0.00 3.51
2915 6590 1.492176 GCCTCTCCTTCCATTCCATCA 59.508 52.381 0.00 0.00 0.00 3.07
2916 6591 2.107901 GCCTCTCCTTCCATTCCATCAT 59.892 50.000 0.00 0.00 0.00 2.45
2929 6604 3.782656 TCCATCATCCATCCATCACAG 57.217 47.619 0.00 0.00 0.00 3.66
2940 6615 1.207089 TCCATCACAGACGATTCACCC 59.793 52.381 0.00 0.00 0.00 4.61
2962 6699 1.467713 CGCTTTCGACAGGACTCTACC 60.468 57.143 0.00 0.00 38.10 3.18
2966 6703 1.901591 TCGACAGGACTCTACCGTTT 58.098 50.000 0.00 0.00 34.73 3.60
2997 6734 8.844441 TTGTCGGTTTTACTACATTTTCTTTG 57.156 30.769 0.00 0.00 0.00 2.77
3007 6744 7.264373 ACTACATTTTCTTTGGTCAGACTTG 57.736 36.000 0.00 0.00 0.00 3.16
3008 6745 4.936891 ACATTTTCTTTGGTCAGACTTGC 58.063 39.130 0.00 0.00 0.00 4.01
3010 6747 2.325583 TTCTTTGGTCAGACTTGCGT 57.674 45.000 0.00 0.00 0.00 5.24
3028 6765 2.796304 CGTTGTTTGACTGTGTGCATT 58.204 42.857 0.00 0.00 0.00 3.56
3029 6766 3.178267 CGTTGTTTGACTGTGTGCATTT 58.822 40.909 0.00 0.00 0.00 2.32
3032 6769 5.052436 CGTTGTTTGACTGTGTGCATTTTAG 60.052 40.000 0.00 0.00 0.00 1.85
3072 6809 9.445786 GGGTGTTATTCATAATGTTTTGTATCG 57.554 33.333 0.00 0.00 0.00 2.92
3077 6814 9.729023 TTATTCATAATGTTTTGTATCGGCTTG 57.271 29.630 0.00 0.00 0.00 4.01
3078 6815 5.577835 TCATAATGTTTTGTATCGGCTTGC 58.422 37.500 0.00 0.00 0.00 4.01
3086 6823 1.066502 TGTATCGGCTTGCTGCTACAA 60.067 47.619 13.57 1.40 42.39 2.41
3146 6890 1.807742 ACAGACGACTGAGAGTAGCAC 59.192 52.381 21.50 0.00 46.03 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.806625 AGAACAAAATTGCTGTGCTGT 57.193 38.095 1.39 0.00 31.02 4.40
21 22 3.983344 GGTAGAACAAAATTGCTGTGCTG 59.017 43.478 10.47 0.00 33.43 4.41
22 23 3.636300 TGGTAGAACAAAATTGCTGTGCT 59.364 39.130 6.65 6.65 36.59 4.40
23 24 3.976169 TGGTAGAACAAAATTGCTGTGC 58.024 40.909 0.00 0.00 0.00 4.57
24 25 5.459762 CACTTGGTAGAACAAAATTGCTGTG 59.540 40.000 0.00 0.00 0.00 3.66
25 26 5.451798 CCACTTGGTAGAACAAAATTGCTGT 60.452 40.000 0.00 0.00 0.00 4.40
40 41 1.753930 CATCATGCAGCCACTTGGTA 58.246 50.000 0.00 0.00 37.57 3.25
42 43 1.141019 GCATCATGCAGCCACTTGG 59.859 57.895 4.20 0.00 44.26 3.61
57 58 2.749621 GTGTTGGTTAGCTTAGCTGCAT 59.250 45.455 17.97 0.00 40.10 3.96
58 59 2.151202 GTGTTGGTTAGCTTAGCTGCA 58.849 47.619 17.97 0.00 40.10 4.41
59 60 1.468914 GGTGTTGGTTAGCTTAGCTGC 59.531 52.381 17.97 9.39 40.10 5.25
60 61 2.084546 GGGTGTTGGTTAGCTTAGCTG 58.915 52.381 17.97 0.00 40.10 4.24
61 62 1.702957 TGGGTGTTGGTTAGCTTAGCT 59.297 47.619 12.67 12.67 43.41 3.32
62 63 2.194201 TGGGTGTTGGTTAGCTTAGC 57.806 50.000 0.00 0.00 0.00 3.09
63 64 4.764823 TCATTTGGGTGTTGGTTAGCTTAG 59.235 41.667 0.00 0.00 0.00 2.18
64 65 4.730966 TCATTTGGGTGTTGGTTAGCTTA 58.269 39.130 0.00 0.00 0.00 3.09
65 66 3.571590 TCATTTGGGTGTTGGTTAGCTT 58.428 40.909 0.00 0.00 0.00 3.74
114 115 3.338249 AGGCATACGCATATGGATCAAC 58.662 45.455 4.56 0.00 38.97 3.18
116 117 2.417243 CGAGGCATACGCATATGGATCA 60.417 50.000 4.56 0.00 38.97 2.92
117 118 2.196749 CGAGGCATACGCATATGGATC 58.803 52.381 4.56 0.00 38.97 3.36
155 157 3.741344 CGGACGGGATTAAGAATGATGAC 59.259 47.826 0.00 0.00 0.00 3.06
173 175 2.173669 CGGGTGATCACATGCGGAC 61.174 63.158 26.47 7.75 0.00 4.79
196 198 1.077787 CAGTGTGGTGTGGTGTGGT 60.078 57.895 0.00 0.00 0.00 4.16
197 199 2.480610 GCAGTGTGGTGTGGTGTGG 61.481 63.158 0.00 0.00 0.00 4.17
198 200 1.748500 TGCAGTGTGGTGTGGTGTG 60.749 57.895 0.00 0.00 0.00 3.82
199 201 1.748879 GTGCAGTGTGGTGTGGTGT 60.749 57.895 0.00 0.00 0.00 4.16
200 202 1.717791 CTGTGCAGTGTGGTGTGGTG 61.718 60.000 0.00 0.00 0.00 4.17
219 221 1.993370 CGACCACTACAACTAAGCAGC 59.007 52.381 0.00 0.00 0.00 5.25
276 295 9.994432 GAATTATTGTGAGTTGTTAATCAGGAG 57.006 33.333 0.00 0.00 0.00 3.69
317 356 1.286501 GTCTCAACCATCGCGCATTA 58.713 50.000 8.75 0.00 0.00 1.90
318 357 1.695893 CGTCTCAACCATCGCGCATT 61.696 55.000 8.75 0.00 0.00 3.56
322 361 1.255342 CATAACGTCTCAACCATCGCG 59.745 52.381 0.00 0.00 0.00 5.87
357 399 4.430765 GACGGTGGCGACGGATGT 62.431 66.667 13.25 0.00 35.23 3.06
358 400 2.274232 TTAGACGGTGGCGACGGATG 62.274 60.000 13.25 0.00 35.23 3.51
359 401 2.048023 TTAGACGGTGGCGACGGAT 61.048 57.895 13.25 4.18 35.23 4.18
360 402 2.672651 TTAGACGGTGGCGACGGA 60.673 61.111 13.25 0.00 35.23 4.69
361 403 2.505557 GTTAGACGGTGGCGACGG 60.506 66.667 4.86 4.86 35.23 4.79
362 404 2.505557 GGTTAGACGGTGGCGACG 60.506 66.667 0.00 0.00 37.36 5.12
363 405 0.390735 ATTGGTTAGACGGTGGCGAC 60.391 55.000 0.00 0.00 0.00 5.19
364 406 0.108520 GATTGGTTAGACGGTGGCGA 60.109 55.000 0.00 0.00 0.00 5.54
365 407 1.418342 CGATTGGTTAGACGGTGGCG 61.418 60.000 0.00 0.00 0.00 5.69
366 408 1.087771 CCGATTGGTTAGACGGTGGC 61.088 60.000 0.00 0.00 40.42 5.01
416 475 3.471495 CGACAATTCCTGTTGGCTTAC 57.529 47.619 0.00 0.00 38.84 2.34
470 530 4.671508 CGGCAACATTTTCTCGCTTTATCA 60.672 41.667 0.00 0.00 0.00 2.15
488 548 3.374988 CAGAGATGACAAATTAGCGGCAA 59.625 43.478 1.45 0.00 0.00 4.52
537 597 0.469917 ACACACTGCTGCTTGTAGGT 59.530 50.000 0.00 0.00 32.41 3.08
544 604 3.274586 CGCACACACACTGCTGCT 61.275 61.111 0.00 0.00 32.03 4.24
545 605 3.512287 GACGCACACACACTGCTGC 62.512 63.158 0.00 0.00 32.03 5.25
552 612 2.279851 CCCGAAGACGCACACACA 60.280 61.111 0.00 0.00 38.29 3.72
556 616 4.717629 CTCGCCCGAAGACGCACA 62.718 66.667 0.00 0.00 38.29 4.57
561 4072 2.508586 AAGGAAGCTCGCCCGAAGAC 62.509 60.000 2.15 0.00 0.00 3.01
567 4078 2.436824 GTGGAAGGAAGCTCGCCC 60.437 66.667 2.15 0.00 0.00 6.13
584 4095 1.654137 GTTTGTTGCCGTGCGACTG 60.654 57.895 14.73 0.00 42.88 3.51
588 4099 1.078759 TTTTGGTTTGTTGCCGTGCG 61.079 50.000 0.00 0.00 0.00 5.34
593 4106 5.559427 ATTTCAACTTTTGGTTTGTTGCC 57.441 34.783 0.00 0.00 40.34 4.52
616 4129 4.082081 CACCATGGCAGAATTACACATTGT 60.082 41.667 13.04 0.00 0.00 2.71
618 4131 4.343231 TCACCATGGCAGAATTACACATT 58.657 39.130 13.04 0.00 0.00 2.71
619 4132 3.966979 TCACCATGGCAGAATTACACAT 58.033 40.909 13.04 0.00 0.00 3.21
620 4133 3.431673 TCACCATGGCAGAATTACACA 57.568 42.857 13.04 0.00 0.00 3.72
621 4134 4.989279 AATCACCATGGCAGAATTACAC 57.011 40.909 13.04 0.00 0.00 2.90
622 4135 5.015515 TCAAATCACCATGGCAGAATTACA 58.984 37.500 13.04 0.00 0.00 2.41
623 4136 5.581126 TCAAATCACCATGGCAGAATTAC 57.419 39.130 13.04 0.00 0.00 1.89
624 4137 6.795144 AATCAAATCACCATGGCAGAATTA 57.205 33.333 13.04 0.00 0.00 1.40
626 4139 5.895534 ACTAATCAAATCACCATGGCAGAAT 59.104 36.000 13.04 0.00 0.00 2.40
628 4141 4.858850 ACTAATCAAATCACCATGGCAGA 58.141 39.130 13.04 11.08 0.00 4.26
632 4180 9.927668 AACTAAAAACTAATCAAATCACCATGG 57.072 29.630 11.19 11.19 0.00 3.66
637 4185 8.699749 GCCACAACTAAAAACTAATCAAATCAC 58.300 33.333 0.00 0.00 0.00 3.06
652 4200 7.701539 ATTATTGTCTGATGCCACAACTAAA 57.298 32.000 0.00 0.00 35.37 1.85
655 4203 6.594788 AAATTATTGTCTGATGCCACAACT 57.405 33.333 0.00 0.00 35.37 3.16
656 4204 6.974622 CCTAAATTATTGTCTGATGCCACAAC 59.025 38.462 0.00 0.00 35.37 3.32
658 4206 5.067674 GCCTAAATTATTGTCTGATGCCACA 59.932 40.000 0.00 0.00 0.00 4.17
668 4216 9.943163 GAAATCAGAAGAGCCTAAATTATTGTC 57.057 33.333 0.00 0.00 0.00 3.18
681 4229 4.749245 TCAAAACCGAAATCAGAAGAGC 57.251 40.909 0.00 0.00 0.00 4.09
687 4235 7.970061 ACACATTATCATCAAAACCGAAATCAG 59.030 33.333 0.00 0.00 0.00 2.90
734 4282 7.806960 GGGAATATATACGCGGATTACAGTATC 59.193 40.741 10.26 0.00 32.71 2.24
821 4369 2.520188 AGATGGATGGAATGGAGGGA 57.480 50.000 0.00 0.00 0.00 4.20
849 4399 3.757248 GAGGCAATGGCGGATCGGT 62.757 63.158 0.00 0.00 42.47 4.69
944 4534 7.273381 CGCTTTGCAGCTGTAAGTAAATTAAAT 59.727 33.333 23.00 0.00 44.85 1.40
1050 4640 2.203126 GCGCCCTTCCTCCTCATG 60.203 66.667 0.00 0.00 0.00 3.07
1431 5021 3.316573 GACCTTGGAGCGGTCCCTG 62.317 68.421 29.73 20.96 44.08 4.45
1588 5178 2.595172 GGAAAAACACGGGGCGGA 60.595 61.111 0.00 0.00 0.00 5.54
1590 5180 2.961669 CTCGGAAAAACACGGGGCG 61.962 63.158 0.00 0.00 0.00 6.13
1592 5182 2.622962 GGCTCGGAAAAACACGGGG 61.623 63.158 0.00 0.00 0.00 5.73
1593 5183 2.951458 GGCTCGGAAAAACACGGG 59.049 61.111 0.00 0.00 0.00 5.28
1614 5204 1.142688 ATGCTCTGTTCCCAACCCCT 61.143 55.000 0.00 0.00 0.00 4.79
1615 5205 0.967380 CATGCTCTGTTCCCAACCCC 60.967 60.000 0.00 0.00 0.00 4.95
1616 5206 0.038166 TCATGCTCTGTTCCCAACCC 59.962 55.000 0.00 0.00 0.00 4.11
1619 5209 1.339438 GCTCTCATGCTCTGTTCCCAA 60.339 52.381 0.00 0.00 0.00 4.12
1620 5210 0.251354 GCTCTCATGCTCTGTTCCCA 59.749 55.000 0.00 0.00 0.00 4.37
1622 5212 1.206610 TCTGCTCTCATGCTCTGTTCC 59.793 52.381 0.00 0.00 0.00 3.62
1623 5213 2.542597 CTCTGCTCTCATGCTCTGTTC 58.457 52.381 0.00 0.00 0.00 3.18
1624 5214 1.207570 CCTCTGCTCTCATGCTCTGTT 59.792 52.381 0.00 0.00 0.00 3.16
1625 5215 0.825410 CCTCTGCTCTCATGCTCTGT 59.175 55.000 0.00 0.00 0.00 3.41
1626 5216 1.067974 CTCCTCTGCTCTCATGCTCTG 59.932 57.143 0.00 0.00 0.00 3.35
1627 5217 1.342275 ACTCCTCTGCTCTCATGCTCT 60.342 52.381 0.00 0.00 0.00 4.09
1628 5218 1.113788 ACTCCTCTGCTCTCATGCTC 58.886 55.000 0.00 0.00 0.00 4.26
1629 5219 1.207570 CAACTCCTCTGCTCTCATGCT 59.792 52.381 0.00 0.00 0.00 3.79
1630 5220 1.206610 TCAACTCCTCTGCTCTCATGC 59.793 52.381 0.00 0.00 0.00 4.06
1631 5221 2.418471 GGTCAACTCCTCTGCTCTCATG 60.418 54.545 0.00 0.00 0.00 3.07
1632 5222 1.830477 GGTCAACTCCTCTGCTCTCAT 59.170 52.381 0.00 0.00 0.00 2.90
1633 5223 1.261480 GGTCAACTCCTCTGCTCTCA 58.739 55.000 0.00 0.00 0.00 3.27
1634 5224 0.534873 GGGTCAACTCCTCTGCTCTC 59.465 60.000 0.00 0.00 0.00 3.20
1701 5291 1.675641 CGCAACCTTCTCCCCCTTG 60.676 63.158 0.00 0.00 0.00 3.61
1716 5306 4.373116 GCCACGTCCTTCTCCGCA 62.373 66.667 0.00 0.00 0.00 5.69
1965 5579 3.712881 GCTGTCGGGTGTCGTTGC 61.713 66.667 0.00 0.00 40.32 4.17
1971 5585 2.997897 GGAGGAGCTGTCGGGTGT 60.998 66.667 0.00 0.00 0.00 4.16
2058 5672 1.305046 GGTGGAGGAGGAGGACGAA 60.305 63.158 0.00 0.00 0.00 3.85
2072 5686 3.825160 CTGTCGGTGGTGGTGGTGG 62.825 68.421 0.00 0.00 0.00 4.61
2073 5687 2.280797 CTGTCGGTGGTGGTGGTG 60.281 66.667 0.00 0.00 0.00 4.17
2074 5688 4.250305 GCTGTCGGTGGTGGTGGT 62.250 66.667 0.00 0.00 0.00 4.16
2183 5797 5.531634 TGTTTGCATTTTGATTCTCTGGTC 58.468 37.500 0.00 0.00 0.00 4.02
2185 5799 8.712285 AATATGTTTGCATTTTGATTCTCTGG 57.288 30.769 0.00 0.00 36.58 3.86
2188 5802 7.983484 AGGGAATATGTTTGCATTTTGATTCTC 59.017 33.333 0.00 0.00 36.58 2.87
2190 5804 7.043192 CGAGGGAATATGTTTGCATTTTGATTC 60.043 37.037 0.00 0.00 36.58 2.52
2191 5805 6.757947 CGAGGGAATATGTTTGCATTTTGATT 59.242 34.615 0.00 0.00 36.58 2.57
2192 5806 6.275335 CGAGGGAATATGTTTGCATTTTGAT 58.725 36.000 0.00 0.00 36.58 2.57
2193 5807 5.649557 CGAGGGAATATGTTTGCATTTTGA 58.350 37.500 0.00 0.00 36.58 2.69
2194 5808 4.268405 GCGAGGGAATATGTTTGCATTTTG 59.732 41.667 0.00 0.00 36.58 2.44
2195 5809 4.432712 GCGAGGGAATATGTTTGCATTTT 58.567 39.130 0.00 0.00 36.58 1.82
2197 5811 2.033299 CGCGAGGGAATATGTTTGCATT 59.967 45.455 0.00 0.00 36.58 3.56
2199 5813 1.013596 CGCGAGGGAATATGTTTGCA 58.986 50.000 0.00 0.00 0.00 4.08
2201 5815 3.825812 GCGCGAGGGAATATGTTTG 57.174 52.632 12.10 0.00 0.00 2.93
2291 5918 1.295423 GAACTAGGACTTGGCGGCA 59.705 57.895 7.97 7.97 0.00 5.69
2314 5941 2.225117 TGGACACCTCTCTCTGACATGA 60.225 50.000 0.00 0.00 0.00 3.07
2358 5985 7.440856 GCAGAAGAAGAAGAAGAAGAAGAAGAA 59.559 37.037 0.00 0.00 0.00 2.52
2359 5986 6.928492 GCAGAAGAAGAAGAAGAAGAAGAAGA 59.072 38.462 0.00 0.00 0.00 2.87
2360 5987 6.128849 CGCAGAAGAAGAAGAAGAAGAAGAAG 60.129 42.308 0.00 0.00 0.00 2.85
2382 6009 1.802069 TTTTGATGATGACGGACGCA 58.198 45.000 0.00 0.00 0.00 5.24
2427 6054 1.679032 GGTTCCCAGAGTATGCACACC 60.679 57.143 0.00 0.00 0.00 4.16
2472 6099 9.474920 CCAACTGAACACATTACATTTTACATT 57.525 29.630 0.00 0.00 0.00 2.71
2492 6129 2.584835 TCCCAATCTCAACCCAACTG 57.415 50.000 0.00 0.00 0.00 3.16
2494 6131 5.480422 ACTTATTTCCCAATCTCAACCCAAC 59.520 40.000 0.00 0.00 0.00 3.77
2495 6132 5.650283 ACTTATTTCCCAATCTCAACCCAA 58.350 37.500 0.00 0.00 0.00 4.12
2496 6133 5.222233 TGACTTATTTCCCAATCTCAACCCA 60.222 40.000 0.00 0.00 0.00 4.51
2497 6134 5.261216 TGACTTATTTCCCAATCTCAACCC 58.739 41.667 0.00 0.00 0.00 4.11
2498 6135 6.834168 TTGACTTATTTCCCAATCTCAACC 57.166 37.500 0.00 0.00 0.00 3.77
2527 6164 2.086869 CATGGACATGGACACAACTCC 58.913 52.381 4.39 0.00 35.24 3.85
2534 6171 2.423446 CATGGACATGGACATGGACA 57.577 50.000 18.75 13.56 42.91 4.02
2594 6231 1.507141 CCCCACTCGTCAACAACTGC 61.507 60.000 0.00 0.00 0.00 4.40
2625 6279 1.464997 GATGAAAAGTCCGTCCACAGC 59.535 52.381 0.00 0.00 0.00 4.40
2655 6309 4.541085 TTATCATCATCGCAACAGCAAG 57.459 40.909 0.00 0.00 0.00 4.01
2665 6319 5.236263 TGTTCCGTTCCAATTATCATCATCG 59.764 40.000 0.00 0.00 0.00 3.84
2722 6385 0.814010 AACAAGGACACCGACTGCAC 60.814 55.000 0.00 0.00 0.00 4.57
2729 6392 2.639286 GCTGCAACAAGGACACCG 59.361 61.111 0.00 0.00 0.00 4.94
2781 6444 6.511017 TCTGAATGAATGAATGAGGAGGAT 57.489 37.500 0.00 0.00 0.00 3.24
2783 6446 4.515944 GCTCTGAATGAATGAATGAGGAGG 59.484 45.833 0.00 0.00 0.00 4.30
2790 6453 3.875727 CACTCGGCTCTGAATGAATGAAT 59.124 43.478 0.00 0.00 0.00 2.57
2791 6454 3.055891 TCACTCGGCTCTGAATGAATGAA 60.056 43.478 0.00 0.00 0.00 2.57
2792 6455 2.497273 TCACTCGGCTCTGAATGAATGA 59.503 45.455 0.00 0.00 0.00 2.57
2793 6456 2.897436 TCACTCGGCTCTGAATGAATG 58.103 47.619 0.00 0.00 0.00 2.67
2794 6457 3.616956 TTCACTCGGCTCTGAATGAAT 57.383 42.857 0.00 0.00 0.00 2.57
2795 6458 3.616956 ATTCACTCGGCTCTGAATGAA 57.383 42.857 5.25 5.25 36.07 2.57
2807 6470 2.158900 ACAGCCCTCCATTATTCACTCG 60.159 50.000 0.00 0.00 0.00 4.18
2810 6473 3.356290 ACAACAGCCCTCCATTATTCAC 58.644 45.455 0.00 0.00 0.00 3.18
2895 6570 1.492176 TGATGGAATGGAAGGAGAGGC 59.508 52.381 0.00 0.00 0.00 4.70
2914 6589 2.896745 TCGTCTGTGATGGATGGATG 57.103 50.000 0.00 0.00 0.00 3.51
2915 6590 3.389002 TGAATCGTCTGTGATGGATGGAT 59.611 43.478 0.00 0.00 0.00 3.41
2916 6591 2.765699 TGAATCGTCTGTGATGGATGGA 59.234 45.455 0.00 0.00 0.00 3.41
2929 6604 1.366854 GAAAGCGGGGGTGAATCGTC 61.367 60.000 0.00 0.00 0.00 4.20
2940 6615 1.446272 GAGTCCTGTCGAAAGCGGG 60.446 63.158 0.00 0.00 38.28 6.13
2983 6720 6.238759 GCAAGTCTGACCAAAGAAAATGTAGT 60.239 38.462 3.76 0.00 0.00 2.73
3007 6744 0.179176 TGCACACAGTCAAACAACGC 60.179 50.000 0.00 0.00 0.00 4.84
3008 6745 2.473530 ATGCACACAGTCAAACAACG 57.526 45.000 0.00 0.00 0.00 4.10
3010 6747 5.960113 ACTAAAATGCACACAGTCAAACAA 58.040 33.333 0.00 0.00 0.00 2.83
3028 6765 1.134220 CCCGGCCTCTGCATAACTAAA 60.134 52.381 0.00 0.00 40.13 1.85
3029 6766 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.000 0.00 0.00 40.13 2.24
3032 6769 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
3039 6776 1.213296 ATGAATAACACCCGGCCTCT 58.787 50.000 0.00 0.00 0.00 3.69
3122 6866 3.127895 GCTACTCTCAGTCGTCTGTGAAT 59.872 47.826 13.80 8.06 41.54 2.57
3123 6867 2.484651 GCTACTCTCAGTCGTCTGTGAA 59.515 50.000 13.80 2.13 41.54 3.18
3134 6878 2.869897 GGAAGAACGTGCTACTCTCAG 58.130 52.381 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.