Multiple sequence alignment - TraesCS4A01G442000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G442000 chr4A 100.000 2797 0 0 1 2797 710212393 710209597 0.000000e+00 5166.0
1 TraesCS4A01G442000 chr7A 90.664 964 51 23 694 1631 26724797 26723847 0.000000e+00 1245.0
2 TraesCS4A01G442000 chr7A 78.009 673 97 29 2076 2724 318755495 318754850 2.630000e-100 375.0
3 TraesCS4A01G442000 chr7A 83.756 394 24 16 1692 2050 26723738 26723350 1.240000e-88 337.0
4 TraesCS4A01G442000 chr7D 90.667 525 33 5 1152 1664 25789769 25789249 0.000000e+00 684.0
5 TraesCS4A01G442000 chr7D 88.395 517 32 17 639 1147 25790308 25789812 5.160000e-167 597.0
6 TraesCS4A01G442000 chr7D 83.594 384 22 7 1695 2050 25789144 25788774 3.480000e-84 322.0
7 TraesCS4A01G442000 chr7D 100.000 30 0 0 1980 2009 25772104 25772075 3.890000e-04 56.5
8 TraesCS4A01G442000 chr2A 83.041 684 90 20 2072 2736 337888982 337889658 5.160000e-167 597.0
9 TraesCS4A01G442000 chr2A 82.216 686 92 23 2072 2736 337771974 337772650 5.230000e-157 564.0
10 TraesCS4A01G442000 chr2A 86.822 258 31 3 2156 2412 195711707 195711452 4.560000e-73 285.0
11 TraesCS4A01G442000 chr7B 82.749 684 92 19 2072 2736 32000052 31999376 1.120000e-163 586.0
12 TraesCS4A01G442000 chr1A 93.112 392 19 7 2076 2465 335045168 335044783 4.040000e-158 568.0
13 TraesCS4A01G442000 chr1A 93.433 335 19 3 2465 2797 335044234 335043901 6.960000e-136 494.0
14 TraesCS4A01G442000 chr4B 81.392 661 101 16 2061 2710 632398419 632399068 1.150000e-143 520.0
15 TraesCS4A01G442000 chr5B 80.612 686 98 23 2070 2736 650991664 650990995 5.380000e-137 497.0
16 TraesCS4A01G442000 chr5B 92.982 171 12 0 2627 2797 610890589 610890759 1.660000e-62 250.0
17 TraesCS4A01G442000 chr6D 79.268 492 78 18 2249 2723 463978896 463979380 3.480000e-84 322.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G442000 chr4A 710209597 710212393 2796 True 5166.000000 5166 100.0000 1 2797 1 chr4A.!!$R1 2796
1 TraesCS4A01G442000 chr7A 26723350 26724797 1447 True 791.000000 1245 87.2100 694 2050 2 chr7A.!!$R2 1356
2 TraesCS4A01G442000 chr7A 318754850 318755495 645 True 375.000000 375 78.0090 2076 2724 1 chr7A.!!$R1 648
3 TraesCS4A01G442000 chr7D 25788774 25790308 1534 True 534.333333 684 87.5520 639 2050 3 chr7D.!!$R2 1411
4 TraesCS4A01G442000 chr2A 337888982 337889658 676 False 597.000000 597 83.0410 2072 2736 1 chr2A.!!$F2 664
5 TraesCS4A01G442000 chr2A 337771974 337772650 676 False 564.000000 564 82.2160 2072 2736 1 chr2A.!!$F1 664
6 TraesCS4A01G442000 chr7B 31999376 32000052 676 True 586.000000 586 82.7490 2072 2736 1 chr7B.!!$R1 664
7 TraesCS4A01G442000 chr1A 335043901 335045168 1267 True 531.000000 568 93.2725 2076 2797 2 chr1A.!!$R1 721
8 TraesCS4A01G442000 chr4B 632398419 632399068 649 False 520.000000 520 81.3920 2061 2710 1 chr4B.!!$F1 649
9 TraesCS4A01G442000 chr5B 650990995 650991664 669 True 497.000000 497 80.6120 2070 2736 1 chr5B.!!$R1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.038343 AATCGTTTGCATGTGCCACC 60.038 50.0 2.07 0.00 41.18 4.61 F
999 1006 0.164432 TACTGTACTGCACGTCGACG 59.836 55.0 34.58 34.58 46.33 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 1755 0.107643 TGCGGTCATTTCAGGTGACA 59.892 50.0 8.33 0.0 45.99 3.58 R
2468 2687 0.179045 GTGGAGATGGGGATGGAACG 60.179 60.0 0.00 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.639078 TCCCTGACTTCATCACAATTCA 57.361 40.909 0.00 0.00 32.37 2.57
22 23 4.326826 TCCCTGACTTCATCACAATTCAC 58.673 43.478 0.00 0.00 32.37 3.18
23 24 4.074259 CCCTGACTTCATCACAATTCACA 58.926 43.478 0.00 0.00 32.37 3.58
24 25 4.520111 CCCTGACTTCATCACAATTCACAA 59.480 41.667 0.00 0.00 32.37 3.33
25 26 5.455392 CCTGACTTCATCACAATTCACAAC 58.545 41.667 0.00 0.00 32.37 3.32
26 27 5.240183 CCTGACTTCATCACAATTCACAACT 59.760 40.000 0.00 0.00 32.37 3.16
27 28 6.427853 CCTGACTTCATCACAATTCACAACTA 59.572 38.462 0.00 0.00 32.37 2.24
28 29 7.120285 CCTGACTTCATCACAATTCACAACTAT 59.880 37.037 0.00 0.00 32.37 2.12
29 30 9.154847 CTGACTTCATCACAATTCACAACTATA 57.845 33.333 0.00 0.00 32.37 1.31
30 31 9.500785 TGACTTCATCACAATTCACAACTATAA 57.499 29.630 0.00 0.00 29.99 0.98
44 45 9.986833 TTCACAACTATAAATGTCATCAAATCG 57.013 29.630 0.00 0.00 0.00 3.34
45 46 9.161629 TCACAACTATAAATGTCATCAAATCGT 57.838 29.630 0.00 0.00 0.00 3.73
46 47 9.773328 CACAACTATAAATGTCATCAAATCGTT 57.227 29.630 0.00 0.00 0.00 3.85
49 50 8.841444 ACTATAAATGTCATCAAATCGTTTGC 57.159 30.769 5.83 0.00 40.43 3.68
50 51 8.458052 ACTATAAATGTCATCAAATCGTTTGCA 58.542 29.630 5.83 0.00 40.43 4.08
51 52 9.454585 CTATAAATGTCATCAAATCGTTTGCAT 57.545 29.630 0.00 2.42 40.43 3.96
52 53 6.397831 AAATGTCATCAAATCGTTTGCATG 57.602 33.333 0.00 0.00 40.43 4.06
53 54 4.502171 TGTCATCAAATCGTTTGCATGT 57.498 36.364 0.00 0.00 40.43 3.21
54 55 4.228317 TGTCATCAAATCGTTTGCATGTG 58.772 39.130 0.00 0.00 40.43 3.21
55 56 3.059834 GTCATCAAATCGTTTGCATGTGC 59.940 43.478 0.00 0.00 40.43 4.57
56 57 2.063156 TCAAATCGTTTGCATGTGCC 57.937 45.000 2.07 0.00 40.43 5.01
57 58 1.339291 TCAAATCGTTTGCATGTGCCA 59.661 42.857 2.07 0.00 40.43 4.92
58 59 1.456544 CAAATCGTTTGCATGTGCCAC 59.543 47.619 2.07 0.00 41.18 5.01
59 60 0.038343 AATCGTTTGCATGTGCCACC 60.038 50.000 2.07 0.00 41.18 4.61
60 61 0.895100 ATCGTTTGCATGTGCCACCT 60.895 50.000 2.07 0.00 41.18 4.00
61 62 1.106351 TCGTTTGCATGTGCCACCTT 61.106 50.000 2.07 0.00 41.18 3.50
62 63 0.664166 CGTTTGCATGTGCCACCTTC 60.664 55.000 2.07 0.00 41.18 3.46
63 64 0.319813 GTTTGCATGTGCCACCTTCC 60.320 55.000 2.07 0.00 41.18 3.46
64 65 1.470996 TTTGCATGTGCCACCTTCCC 61.471 55.000 2.07 0.00 41.18 3.97
65 66 2.036256 GCATGTGCCACCTTCCCT 59.964 61.111 0.00 0.00 34.31 4.20
66 67 2.345760 GCATGTGCCACCTTCCCTG 61.346 63.158 0.00 0.00 34.31 4.45
67 68 1.679977 CATGTGCCACCTTCCCTGG 60.680 63.158 0.00 0.00 0.00 4.45
73 74 2.074967 CCACCTTCCCTGGCTAACA 58.925 57.895 0.00 0.00 0.00 2.41
74 75 0.625849 CCACCTTCCCTGGCTAACAT 59.374 55.000 0.00 0.00 0.00 2.71
75 76 1.005924 CCACCTTCCCTGGCTAACATT 59.994 52.381 0.00 0.00 0.00 2.71
76 77 2.369394 CACCTTCCCTGGCTAACATTC 58.631 52.381 0.00 0.00 0.00 2.67
77 78 1.065418 ACCTTCCCTGGCTAACATTCG 60.065 52.381 0.00 0.00 0.00 3.34
78 79 1.017387 CTTCCCTGGCTAACATTCGC 58.983 55.000 0.00 0.00 0.00 4.70
79 80 0.618458 TTCCCTGGCTAACATTCGCT 59.382 50.000 0.00 0.00 0.00 4.93
80 81 1.491668 TCCCTGGCTAACATTCGCTA 58.508 50.000 0.00 0.00 0.00 4.26
81 82 1.412710 TCCCTGGCTAACATTCGCTAG 59.587 52.381 0.00 0.00 34.90 3.42
82 83 1.139058 CCCTGGCTAACATTCGCTAGT 59.861 52.381 1.76 0.00 33.49 2.57
83 84 2.420129 CCCTGGCTAACATTCGCTAGTT 60.420 50.000 1.76 0.00 33.49 2.24
84 85 3.181469 CCCTGGCTAACATTCGCTAGTTA 60.181 47.826 1.76 0.00 33.49 2.24
85 86 4.051922 CCTGGCTAACATTCGCTAGTTAG 58.948 47.826 13.09 13.09 46.17 2.34
86 87 4.051922 CTGGCTAACATTCGCTAGTTAGG 58.948 47.826 16.77 3.59 44.51 2.69
87 88 3.702548 TGGCTAACATTCGCTAGTTAGGA 59.297 43.478 16.77 0.00 44.51 2.94
88 89 4.202121 TGGCTAACATTCGCTAGTTAGGAG 60.202 45.833 16.77 2.19 44.51 3.69
89 90 4.299978 GCTAACATTCGCTAGTTAGGAGG 58.700 47.826 16.77 0.84 44.51 4.30
90 91 3.821421 AACATTCGCTAGTTAGGAGGG 57.179 47.619 0.00 0.00 0.00 4.30
91 92 2.748388 ACATTCGCTAGTTAGGAGGGT 58.252 47.619 0.00 0.00 0.00 4.34
92 93 2.694109 ACATTCGCTAGTTAGGAGGGTC 59.306 50.000 0.00 0.00 0.00 4.46
93 94 1.772836 TTCGCTAGTTAGGAGGGTCC 58.227 55.000 0.00 0.00 36.58 4.46
109 110 7.956328 GGAGGGTCCTAAAATTAAGATGTTT 57.044 36.000 0.00 0.00 32.53 2.83
111 112 9.121658 GGAGGGTCCTAAAATTAAGATGTTTAG 57.878 37.037 0.00 0.00 35.51 1.85
112 113 8.521170 AGGGTCCTAAAATTAAGATGTTTAGC 57.479 34.615 0.00 0.00 34.77 3.09
113 114 8.336987 AGGGTCCTAAAATTAAGATGTTTAGCT 58.663 33.333 0.00 0.00 34.77 3.32
114 115 9.623000 GGGTCCTAAAATTAAGATGTTTAGCTA 57.377 33.333 0.00 0.00 34.77 3.32
161 162 8.783660 AATATACTGTCTCATCCTTTCTACCA 57.216 34.615 0.00 0.00 0.00 3.25
162 163 4.810191 ACTGTCTCATCCTTTCTACCAC 57.190 45.455 0.00 0.00 0.00 4.16
163 164 3.515901 ACTGTCTCATCCTTTCTACCACC 59.484 47.826 0.00 0.00 0.00 4.61
164 165 2.838202 TGTCTCATCCTTTCTACCACCC 59.162 50.000 0.00 0.00 0.00 4.61
165 166 3.108376 GTCTCATCCTTTCTACCACCCT 58.892 50.000 0.00 0.00 0.00 4.34
166 167 3.107601 TCTCATCCTTTCTACCACCCTG 58.892 50.000 0.00 0.00 0.00 4.45
167 168 3.107601 CTCATCCTTTCTACCACCCTGA 58.892 50.000 0.00 0.00 0.00 3.86
168 169 3.713764 CTCATCCTTTCTACCACCCTGAT 59.286 47.826 0.00 0.00 0.00 2.90
169 170 4.890988 TCATCCTTTCTACCACCCTGATA 58.109 43.478 0.00 0.00 0.00 2.15
170 171 5.285401 TCATCCTTTCTACCACCCTGATAA 58.715 41.667 0.00 0.00 0.00 1.75
171 172 5.130477 TCATCCTTTCTACCACCCTGATAAC 59.870 44.000 0.00 0.00 0.00 1.89
172 173 4.695606 TCCTTTCTACCACCCTGATAACT 58.304 43.478 0.00 0.00 0.00 2.24
173 174 4.469945 TCCTTTCTACCACCCTGATAACTG 59.530 45.833 0.00 0.00 0.00 3.16
174 175 4.384208 CCTTTCTACCACCCTGATAACTGG 60.384 50.000 0.00 0.00 35.34 4.00
175 176 3.484953 TCTACCACCCTGATAACTGGT 57.515 47.619 0.00 0.00 40.27 4.00
176 177 3.104512 TCTACCACCCTGATAACTGGTG 58.895 50.000 0.00 0.00 37.58 4.17
177 178 0.991920 ACCACCCTGATAACTGGTGG 59.008 55.000 22.08 22.08 39.53 4.61
178 179 1.285280 CCACCCTGATAACTGGTGGA 58.715 55.000 19.75 0.00 37.89 4.02
179 180 1.065418 CCACCCTGATAACTGGTGGAC 60.065 57.143 19.75 0.00 37.89 4.02
180 181 1.065418 CACCCTGATAACTGGTGGACC 60.065 57.143 0.00 0.00 34.02 4.46
181 182 0.546598 CCCTGATAACTGGTGGACCC 59.453 60.000 0.00 0.00 34.02 4.46
182 183 1.285280 CCTGATAACTGGTGGACCCA 58.715 55.000 0.00 0.00 42.51 4.51
183 184 1.065418 CCTGATAACTGGTGGACCCAC 60.065 57.143 10.61 10.61 45.49 4.61
193 194 2.287977 GTGGACCCACCTAGCTTTTT 57.712 50.000 7.95 0.00 40.79 1.94
194 195 3.428413 GTGGACCCACCTAGCTTTTTA 57.572 47.619 7.95 0.00 40.79 1.52
195 196 3.964411 GTGGACCCACCTAGCTTTTTAT 58.036 45.455 7.95 0.00 40.79 1.40
196 197 3.694566 GTGGACCCACCTAGCTTTTTATG 59.305 47.826 7.95 0.00 40.79 1.90
197 198 3.332485 TGGACCCACCTAGCTTTTTATGT 59.668 43.478 0.00 0.00 39.86 2.29
198 199 3.694566 GGACCCACCTAGCTTTTTATGTG 59.305 47.826 0.00 0.00 35.41 3.21
199 200 3.089284 ACCCACCTAGCTTTTTATGTGC 58.911 45.455 0.00 0.00 0.00 4.57
200 201 3.088532 CCCACCTAGCTTTTTATGTGCA 58.911 45.455 0.00 0.00 0.00 4.57
201 202 3.701040 CCCACCTAGCTTTTTATGTGCAT 59.299 43.478 0.00 0.00 0.00 3.96
202 203 4.887071 CCCACCTAGCTTTTTATGTGCATA 59.113 41.667 0.00 0.00 0.00 3.14
203 204 5.221048 CCCACCTAGCTTTTTATGTGCATAC 60.221 44.000 0.00 0.00 0.00 2.39
204 205 5.221048 CCACCTAGCTTTTTATGTGCATACC 60.221 44.000 0.00 0.00 0.00 2.73
205 206 4.574828 ACCTAGCTTTTTATGTGCATACCG 59.425 41.667 0.00 0.00 0.00 4.02
206 207 4.814234 CCTAGCTTTTTATGTGCATACCGA 59.186 41.667 0.00 0.00 0.00 4.69
207 208 5.470098 CCTAGCTTTTTATGTGCATACCGAT 59.530 40.000 0.00 0.00 0.00 4.18
208 209 6.649141 CCTAGCTTTTTATGTGCATACCGATA 59.351 38.462 0.00 0.00 0.00 2.92
209 210 6.935741 AGCTTTTTATGTGCATACCGATAA 57.064 33.333 0.00 0.00 0.00 1.75
210 211 6.725246 AGCTTTTTATGTGCATACCGATAAC 58.275 36.000 0.00 0.00 0.00 1.89
211 212 5.619607 GCTTTTTATGTGCATACCGATAACG 59.380 40.000 0.00 0.00 39.43 3.18
212 213 6.665474 TTTTTATGTGCATACCGATAACGT 57.335 33.333 0.00 0.00 37.88 3.99
213 214 6.665474 TTTTATGTGCATACCGATAACGTT 57.335 33.333 5.88 5.88 37.88 3.99
214 215 6.665474 TTTATGTGCATACCGATAACGTTT 57.335 33.333 5.91 0.00 37.88 3.60
215 216 4.789095 ATGTGCATACCGATAACGTTTC 57.211 40.909 5.91 3.24 37.88 2.78
216 217 3.586892 TGTGCATACCGATAACGTTTCA 58.413 40.909 5.91 0.00 37.88 2.69
217 218 3.615056 TGTGCATACCGATAACGTTTCAG 59.385 43.478 5.91 0.00 37.88 3.02
218 219 3.000925 GTGCATACCGATAACGTTTCAGG 59.999 47.826 5.91 10.02 37.88 3.86
219 220 3.192466 GCATACCGATAACGTTTCAGGT 58.808 45.455 19.88 19.88 37.88 4.00
220 221 4.142204 TGCATACCGATAACGTTTCAGGTA 60.142 41.667 22.01 22.01 38.41 3.08
221 222 4.986659 GCATACCGATAACGTTTCAGGTAT 59.013 41.667 23.64 23.64 43.37 2.73
223 224 3.788937 ACCGATAACGTTTCAGGTATGG 58.211 45.455 5.91 0.42 37.88 2.74
224 225 3.196254 ACCGATAACGTTTCAGGTATGGT 59.804 43.478 5.91 1.07 37.88 3.55
225 226 4.186159 CCGATAACGTTTCAGGTATGGTT 58.814 43.478 5.91 0.00 37.88 3.67
226 227 4.269363 CCGATAACGTTTCAGGTATGGTTC 59.731 45.833 5.91 0.00 37.88 3.62
227 228 4.269363 CGATAACGTTTCAGGTATGGTTCC 59.731 45.833 5.91 0.00 34.56 3.62
228 229 3.782656 AACGTTTCAGGTATGGTTCCT 57.217 42.857 0.00 0.00 35.45 3.36
229 230 3.782656 ACGTTTCAGGTATGGTTCCTT 57.217 42.857 0.00 0.00 32.37 3.36
230 231 4.094830 ACGTTTCAGGTATGGTTCCTTT 57.905 40.909 0.00 0.00 32.37 3.11
231 232 4.070009 ACGTTTCAGGTATGGTTCCTTTC 58.930 43.478 0.00 0.00 32.37 2.62
232 233 3.124636 CGTTTCAGGTATGGTTCCTTTCG 59.875 47.826 0.00 0.00 32.37 3.46
233 234 3.343941 TTCAGGTATGGTTCCTTTCGG 57.656 47.619 0.00 0.00 32.37 4.30
234 235 1.557832 TCAGGTATGGTTCCTTTCGGG 59.442 52.381 0.00 0.00 32.37 5.14
235 236 1.557832 CAGGTATGGTTCCTTTCGGGA 59.442 52.381 0.00 0.00 43.41 5.14
236 237 2.172717 CAGGTATGGTTCCTTTCGGGAT 59.827 50.000 0.00 0.00 44.66 3.85
237 238 2.850568 AGGTATGGTTCCTTTCGGGATT 59.149 45.455 0.00 0.00 44.66 3.01
238 239 3.268595 AGGTATGGTTCCTTTCGGGATTT 59.731 43.478 0.00 0.00 44.66 2.17
239 240 4.021229 GGTATGGTTCCTTTCGGGATTTT 58.979 43.478 0.00 0.00 44.66 1.82
240 241 4.464951 GGTATGGTTCCTTTCGGGATTTTT 59.535 41.667 0.00 0.00 44.66 1.94
262 263 7.680442 TTTTTCTTCTTTTTGGGTTTCCTTG 57.320 32.000 0.00 0.00 0.00 3.61
263 264 6.367374 TTTCTTCTTTTTGGGTTTCCTTGT 57.633 33.333 0.00 0.00 0.00 3.16
264 265 7.483580 TTTCTTCTTTTTGGGTTTCCTTGTA 57.516 32.000 0.00 0.00 0.00 2.41
265 266 6.459670 TCTTCTTTTTGGGTTTCCTTGTAC 57.540 37.500 0.00 0.00 0.00 2.90
266 267 4.904253 TCTTTTTGGGTTTCCTTGTACG 57.096 40.909 0.00 0.00 0.00 3.67
267 268 3.633065 TCTTTTTGGGTTTCCTTGTACGG 59.367 43.478 0.00 0.00 0.00 4.02
268 269 2.732844 TTTGGGTTTCCTTGTACGGT 57.267 45.000 0.00 0.00 0.00 4.83
269 270 2.732844 TTGGGTTTCCTTGTACGGTT 57.267 45.000 0.00 0.00 0.00 4.44
270 271 2.259266 TGGGTTTCCTTGTACGGTTC 57.741 50.000 0.00 0.00 0.00 3.62
271 272 1.489649 TGGGTTTCCTTGTACGGTTCA 59.510 47.619 0.00 0.00 0.00 3.18
272 273 2.106857 TGGGTTTCCTTGTACGGTTCAT 59.893 45.455 0.00 0.00 0.00 2.57
273 274 2.745821 GGGTTTCCTTGTACGGTTCATC 59.254 50.000 0.00 0.00 0.00 2.92
274 275 3.558533 GGGTTTCCTTGTACGGTTCATCT 60.559 47.826 0.00 0.00 0.00 2.90
275 276 3.435671 GGTTTCCTTGTACGGTTCATCTG 59.564 47.826 0.00 0.00 0.00 2.90
276 277 4.062991 GTTTCCTTGTACGGTTCATCTGT 58.937 43.478 0.00 0.00 39.26 3.41
277 278 4.345859 TTCCTTGTACGGTTCATCTGTT 57.654 40.909 0.00 0.00 36.91 3.16
278 279 4.345859 TCCTTGTACGGTTCATCTGTTT 57.654 40.909 0.00 0.00 36.91 2.83
279 280 4.710324 TCCTTGTACGGTTCATCTGTTTT 58.290 39.130 0.00 0.00 36.91 2.43
280 281 5.127491 TCCTTGTACGGTTCATCTGTTTTT 58.873 37.500 0.00 0.00 36.91 1.94
303 304 9.781834 TTTTTAGCTTCATGTATGGTTTAATCG 57.218 29.630 0.00 0.00 0.00 3.34
304 305 7.490962 TTAGCTTCATGTATGGTTTAATCGG 57.509 36.000 0.00 0.00 0.00 4.18
305 306 5.437060 AGCTTCATGTATGGTTTAATCGGT 58.563 37.500 0.00 0.00 0.00 4.69
306 307 5.885912 AGCTTCATGTATGGTTTAATCGGTT 59.114 36.000 0.00 0.00 0.00 4.44
307 308 6.377146 AGCTTCATGTATGGTTTAATCGGTTT 59.623 34.615 0.00 0.00 0.00 3.27
308 309 7.033185 GCTTCATGTATGGTTTAATCGGTTTT 58.967 34.615 0.00 0.00 0.00 2.43
309 310 7.220108 GCTTCATGTATGGTTTAATCGGTTTTC 59.780 37.037 0.00 0.00 0.00 2.29
310 311 7.931578 TCATGTATGGTTTAATCGGTTTTCT 57.068 32.000 0.00 0.00 0.00 2.52
311 312 8.343168 TCATGTATGGTTTAATCGGTTTTCTT 57.657 30.769 0.00 0.00 0.00 2.52
312 313 8.455682 TCATGTATGGTTTAATCGGTTTTCTTC 58.544 33.333 0.00 0.00 0.00 2.87
313 314 7.148355 TGTATGGTTTAATCGGTTTTCTTCC 57.852 36.000 0.00 0.00 0.00 3.46
314 315 6.715718 TGTATGGTTTAATCGGTTTTCTTCCA 59.284 34.615 0.00 0.00 0.00 3.53
315 316 6.850752 ATGGTTTAATCGGTTTTCTTCCAT 57.149 33.333 0.00 0.00 0.00 3.41
316 317 6.658188 TGGTTTAATCGGTTTTCTTCCATT 57.342 33.333 0.00 0.00 0.00 3.16
317 318 7.056844 TGGTTTAATCGGTTTTCTTCCATTT 57.943 32.000 0.00 0.00 0.00 2.32
318 319 7.501844 TGGTTTAATCGGTTTTCTTCCATTTT 58.498 30.769 0.00 0.00 0.00 1.82
319 320 7.988028 TGGTTTAATCGGTTTTCTTCCATTTTT 59.012 29.630 0.00 0.00 0.00 1.94
320 321 9.478768 GGTTTAATCGGTTTTCTTCCATTTTTA 57.521 29.630 0.00 0.00 0.00 1.52
325 326 9.607988 AATCGGTTTTCTTCCATTTTTAAAGTT 57.392 25.926 0.00 0.00 0.00 2.66
326 327 8.637281 TCGGTTTTCTTCCATTTTTAAAGTTC 57.363 30.769 0.00 0.00 0.00 3.01
327 328 8.251721 TCGGTTTTCTTCCATTTTTAAAGTTCA 58.748 29.630 0.00 0.00 0.00 3.18
328 329 9.040939 CGGTTTTCTTCCATTTTTAAAGTTCAT 57.959 29.630 0.00 0.00 0.00 2.57
370 371 8.983307 TTTAAAATTGTAAAACGTGTTGGTCT 57.017 26.923 0.00 0.00 0.00 3.85
374 375 9.589111 AAAATTGTAAAACGTGTTGGTCTATTT 57.411 25.926 0.00 4.49 0.00 1.40
375 376 9.589111 AAATTGTAAAACGTGTTGGTCTATTTT 57.411 25.926 0.00 0.00 0.00 1.82
376 377 7.972623 TTGTAAAACGTGTTGGTCTATTTTG 57.027 32.000 0.00 0.00 0.00 2.44
377 378 7.317842 TGTAAAACGTGTTGGTCTATTTTGA 57.682 32.000 0.00 0.00 0.00 2.69
378 379 7.411274 TGTAAAACGTGTTGGTCTATTTTGAG 58.589 34.615 0.00 0.00 0.00 3.02
379 380 6.687081 AAAACGTGTTGGTCTATTTTGAGA 57.313 33.333 0.00 0.00 0.00 3.27
380 381 6.687081 AAACGTGTTGGTCTATTTTGAGAA 57.313 33.333 0.00 0.00 0.00 2.87
381 382 6.687081 AACGTGTTGGTCTATTTTGAGAAA 57.313 33.333 0.00 0.00 0.00 2.52
382 383 6.687081 ACGTGTTGGTCTATTTTGAGAAAA 57.313 33.333 0.00 0.00 34.41 2.29
383 384 7.090953 ACGTGTTGGTCTATTTTGAGAAAAA 57.909 32.000 0.00 0.00 33.47 1.94
426 427 9.965824 AAATGTTGACTAGTTAGAAAATGGTTG 57.034 29.630 0.00 0.00 0.00 3.77
427 428 8.691661 ATGTTGACTAGTTAGAAAATGGTTGT 57.308 30.769 0.00 0.00 0.00 3.32
428 429 7.925993 TGTTGACTAGTTAGAAAATGGTTGTG 58.074 34.615 0.00 0.00 0.00 3.33
429 430 7.554835 TGTTGACTAGTTAGAAAATGGTTGTGT 59.445 33.333 0.00 0.00 0.00 3.72
430 431 9.048446 GTTGACTAGTTAGAAAATGGTTGTGTA 57.952 33.333 0.00 0.00 0.00 2.90
431 432 9.787435 TTGACTAGTTAGAAAATGGTTGTGTAT 57.213 29.630 0.00 0.00 0.00 2.29
432 433 9.787435 TGACTAGTTAGAAAATGGTTGTGTATT 57.213 29.630 0.00 0.00 0.00 1.89
437 438 9.131791 AGTTAGAAAATGGTTGTGTATTTCAGT 57.868 29.630 0.00 0.00 33.53 3.41
440 441 8.691661 AGAAAATGGTTGTGTATTTCAGTAGT 57.308 30.769 0.00 0.00 33.53 2.73
441 442 9.131791 AGAAAATGGTTGTGTATTTCAGTAGTT 57.868 29.630 0.00 0.00 33.53 2.24
442 443 9.394477 GAAAATGGTTGTGTATTTCAGTAGTTC 57.606 33.333 0.00 0.00 31.88 3.01
443 444 8.458573 AAATGGTTGTGTATTTCAGTAGTTCA 57.541 30.769 0.00 0.00 0.00 3.18
444 445 8.458573 AATGGTTGTGTATTTCAGTAGTTCAA 57.541 30.769 0.00 0.00 0.00 2.69
445 446 7.254227 TGGTTGTGTATTTCAGTAGTTCAAC 57.746 36.000 0.00 0.00 34.08 3.18
446 447 6.824196 TGGTTGTGTATTTCAGTAGTTCAACA 59.176 34.615 0.00 0.00 35.75 3.33
447 448 7.337184 TGGTTGTGTATTTCAGTAGTTCAACAA 59.663 33.333 0.00 0.00 35.75 2.83
448 449 8.185505 GGTTGTGTATTTCAGTAGTTCAACAAA 58.814 33.333 0.00 0.00 35.75 2.83
449 450 9.730420 GTTGTGTATTTCAGTAGTTCAACAAAT 57.270 29.630 0.00 0.00 34.69 2.32
552 553 9.967346 TTTTCGTGGATATTAAAACAATGTTCA 57.033 25.926 0.00 0.00 0.00 3.18
554 555 9.781834 TTCGTGGATATTAAAACAATGTTCATC 57.218 29.630 0.00 0.00 0.00 2.92
555 556 9.173021 TCGTGGATATTAAAACAATGTTCATCT 57.827 29.630 0.00 0.00 0.00 2.90
556 557 9.787532 CGTGGATATTAAAACAATGTTCATCTT 57.212 29.630 0.00 0.00 0.00 2.40
564 565 9.729023 TTAAAACAATGTTCATCTTGTACTGTG 57.271 29.630 0.00 0.00 34.61 3.66
565 566 7.566760 AAACAATGTTCATCTTGTACTGTGA 57.433 32.000 0.00 0.00 34.61 3.58
566 567 7.566760 AACAATGTTCATCTTGTACTGTGAA 57.433 32.000 0.00 0.00 34.61 3.18
567 568 7.566760 ACAATGTTCATCTTGTACTGTGAAA 57.433 32.000 0.00 0.00 33.96 2.69
568 569 7.417612 ACAATGTTCATCTTGTACTGTGAAAC 58.582 34.615 0.00 0.00 33.96 2.78
569 570 7.066887 ACAATGTTCATCTTGTACTGTGAAACA 59.933 33.333 0.00 0.00 38.00 2.83
612 613 6.403866 AAAAATGCTACCAACTCATTCACA 57.596 33.333 0.00 0.00 30.84 3.58
613 614 5.633830 AAATGCTACCAACTCATTCACAG 57.366 39.130 0.00 0.00 30.84 3.66
614 615 4.558226 ATGCTACCAACTCATTCACAGA 57.442 40.909 0.00 0.00 0.00 3.41
615 616 4.558226 TGCTACCAACTCATTCACAGAT 57.442 40.909 0.00 0.00 0.00 2.90
616 617 4.910195 TGCTACCAACTCATTCACAGATT 58.090 39.130 0.00 0.00 0.00 2.40
617 618 5.316167 TGCTACCAACTCATTCACAGATTT 58.684 37.500 0.00 0.00 0.00 2.17
618 619 5.769662 TGCTACCAACTCATTCACAGATTTT 59.230 36.000 0.00 0.00 0.00 1.82
619 620 6.939730 TGCTACCAACTCATTCACAGATTTTA 59.060 34.615 0.00 0.00 0.00 1.52
620 621 7.446931 TGCTACCAACTCATTCACAGATTTTAA 59.553 33.333 0.00 0.00 0.00 1.52
621 622 8.296713 GCTACCAACTCATTCACAGATTTTAAA 58.703 33.333 0.00 0.00 0.00 1.52
665 669 7.399245 AATAAATAAAAGGCCGCTTACTGAA 57.601 32.000 0.00 0.00 0.00 3.02
666 670 5.914898 AAATAAAAGGCCGCTTACTGAAT 57.085 34.783 0.00 0.00 0.00 2.57
667 671 8.685838 ATAAATAAAAGGCCGCTTACTGAATA 57.314 30.769 0.00 0.00 0.00 1.75
668 672 7.582667 AAATAAAAGGCCGCTTACTGAATAT 57.417 32.000 0.00 0.00 0.00 1.28
669 673 6.803154 ATAAAAGGCCGCTTACTGAATATC 57.197 37.500 0.00 0.00 0.00 1.63
670 674 2.440539 AGGCCGCTTACTGAATATCG 57.559 50.000 0.00 0.00 0.00 2.92
671 675 1.961394 AGGCCGCTTACTGAATATCGA 59.039 47.619 0.00 0.00 0.00 3.59
672 676 2.059541 GGCCGCTTACTGAATATCGAC 58.940 52.381 0.00 0.00 0.00 4.20
673 677 1.714460 GCCGCTTACTGAATATCGACG 59.286 52.381 0.00 0.00 0.00 5.12
675 679 3.624900 CCGCTTACTGAATATCGACGAA 58.375 45.455 0.00 0.00 0.00 3.85
677 681 4.280461 CGCTTACTGAATATCGACGAACT 58.720 43.478 0.00 0.00 0.00 3.01
678 682 5.438117 CGCTTACTGAATATCGACGAACTA 58.562 41.667 0.00 0.00 0.00 2.24
679 683 5.560751 CGCTTACTGAATATCGACGAACTAG 59.439 44.000 0.00 0.00 0.00 2.57
681 685 6.615264 TTACTGAATATCGACGAACTAGCT 57.385 37.500 0.00 0.00 0.00 3.32
682 686 7.570875 GCTTACTGAATATCGACGAACTAGCTA 60.571 40.741 0.00 0.00 0.00 3.32
683 687 6.230849 ACTGAATATCGACGAACTAGCTAG 57.769 41.667 19.44 19.44 0.00 3.42
684 688 5.032100 TGAATATCGACGAACTAGCTAGC 57.968 43.478 20.91 6.62 0.00 3.42
685 689 4.514066 TGAATATCGACGAACTAGCTAGCA 59.486 41.667 20.91 2.88 0.00 3.49
686 690 5.181433 TGAATATCGACGAACTAGCTAGCAT 59.819 40.000 20.91 10.01 0.00 3.79
722 726 2.040009 TTGATAGCCGGCCCAGCTAC 62.040 60.000 26.15 15.74 45.16 3.58
731 735 2.436646 CCCAGCTACCGTGCCTTG 60.437 66.667 0.00 0.00 0.00 3.61
733 737 2.358615 CAGCTACCGTGCCTTGCA 60.359 61.111 0.00 0.00 35.60 4.08
735 739 3.127533 GCTACCGTGCCTTGCAGG 61.128 66.667 1.98 1.98 40.08 4.85
771 776 0.721718 CGTTCCACGCTCTGAATTCC 59.278 55.000 2.27 0.00 33.65 3.01
778 783 0.941463 CGCTCTGAATTCCCGGATCG 60.941 60.000 0.73 3.01 0.00 3.69
784 789 0.249911 GAATTCCCGGATCGTGGAGG 60.250 60.000 0.73 0.00 30.67 4.30
903 909 1.228367 CCCCTCCTACCATGCATGC 60.228 63.158 21.69 11.82 0.00 4.06
934 941 4.421574 TCCTCCTCCTTTATATCTCCCC 57.578 50.000 0.00 0.00 0.00 4.81
975 982 3.543665 GAGGTCATCAGTAGTCGGTACT 58.456 50.000 0.00 0.00 43.31 2.73
999 1006 0.164432 TACTGTACTGCACGTCGACG 59.836 55.000 34.58 34.58 46.33 5.12
1147 1156 4.735662 TCACGTTACTTACACATTTGCC 57.264 40.909 0.00 0.00 0.00 4.52
1148 1157 4.127907 TCACGTTACTTACACATTTGCCA 58.872 39.130 0.00 0.00 0.00 4.92
1150 1159 5.239744 TCACGTTACTTACACATTTGCCATT 59.760 36.000 0.00 0.00 0.00 3.16
1157 1204 1.374505 ACATTTGCCATTGTGCGCC 60.375 52.632 4.18 0.00 0.00 6.53
1160 1207 1.818959 ATTTGCCATTGTGCGCCTGT 61.819 50.000 4.18 0.00 0.00 4.00
1161 1208 2.696409 TTTGCCATTGTGCGCCTGTG 62.696 55.000 4.18 0.00 0.00 3.66
1194 1241 0.384353 GTTCTTGACGCGTTCTTGGC 60.384 55.000 15.53 0.00 0.00 4.52
1195 1242 0.812014 TTCTTGACGCGTTCTTGGCA 60.812 50.000 15.53 1.69 0.00 4.92
1199 1246 0.882484 TGACGCGTTCTTGGCAATGA 60.882 50.000 15.53 0.00 0.00 2.57
1632 1704 2.747686 CACCCAGCCAAGGTACGT 59.252 61.111 0.00 0.00 35.24 3.57
1633 1705 1.546589 CCACCCAGCCAAGGTACGTA 61.547 60.000 0.00 0.00 35.24 3.57
1634 1706 0.390735 CACCCAGCCAAGGTACGTAC 60.391 60.000 17.56 17.56 35.24 3.67
1658 1730 1.081774 CGAGCTCCGTCGATCCATC 60.082 63.158 8.47 0.00 42.85 3.51
1664 1736 1.080501 CCGTCGATCCATCCATCGG 60.081 63.158 0.00 0.00 44.85 4.18
1665 1737 1.734477 CGTCGATCCATCCATCGGC 60.734 63.158 3.20 0.35 45.53 5.54
1666 1738 1.374758 GTCGATCCATCCATCGGCC 60.375 63.158 0.00 0.00 43.67 6.13
1667 1739 2.433145 CGATCCATCCATCGGCCG 60.433 66.667 22.12 22.12 41.71 6.13
1684 1756 2.916111 GCCGACGCCATTACATATTTG 58.084 47.619 0.00 0.00 0.00 2.32
1685 1757 2.289547 GCCGACGCCATTACATATTTGT 59.710 45.455 0.00 0.00 39.98 2.83
1687 1759 3.558006 CCGACGCCATTACATATTTGTCA 59.442 43.478 0.00 0.00 37.28 3.58
1688 1760 4.514506 CGACGCCATTACATATTTGTCAC 58.485 43.478 0.00 0.00 37.28 3.67
1689 1761 4.551990 CGACGCCATTACATATTTGTCACC 60.552 45.833 0.00 0.00 37.28 4.02
1690 1762 4.523083 ACGCCATTACATATTTGTCACCT 58.477 39.130 0.00 0.00 37.28 4.00
1698 1848 9.507280 CATTACATATTTGTCACCTGAAATGAC 57.493 33.333 0.00 0.00 45.58 3.06
1808 1973 2.609459 CGGGTGCTAGTTTGCTAATCAG 59.391 50.000 0.00 0.00 0.00 2.90
1820 1985 1.871080 CTAATCAGTGGACGGATGGC 58.129 55.000 0.00 0.00 31.33 4.40
1838 2003 1.396653 GCCTCACCATTTGATCCCTG 58.603 55.000 0.00 0.00 32.17 4.45
1863 2028 6.200286 GCTTGATGAATTAGAATGTGCCATTG 59.800 38.462 5.31 0.00 0.00 2.82
1864 2029 5.593968 TGATGAATTAGAATGTGCCATTGC 58.406 37.500 5.31 0.00 38.26 3.56
1867 2032 4.098349 TGAATTAGAATGTGCCATTGCCTC 59.902 41.667 5.31 0.00 36.33 4.70
1869 2034 2.226962 AGAATGTGCCATTGCCTCTT 57.773 45.000 5.31 0.00 36.33 2.85
1870 2035 2.532843 AGAATGTGCCATTGCCTCTTT 58.467 42.857 5.31 0.00 36.33 2.52
1871 2036 2.901839 AGAATGTGCCATTGCCTCTTTT 59.098 40.909 5.31 0.00 36.33 2.27
1872 2037 3.325716 AGAATGTGCCATTGCCTCTTTTT 59.674 39.130 5.31 0.00 36.33 1.94
1910 2084 6.729391 TTTAAGTTGCCCTGTTTTGTTTTC 57.271 33.333 0.00 0.00 0.00 2.29
1953 2142 7.297229 TCGATCGATTTGTATTTTGTAAGCA 57.703 32.000 15.15 0.00 0.00 3.91
2037 2236 4.994852 TGTTCTATTGTGCTACTGGTTCAC 59.005 41.667 0.00 0.00 0.00 3.18
2050 2249 1.273606 TGGTTCACACTCTAGCTCTGC 59.726 52.381 0.00 0.00 0.00 4.26
2051 2250 1.273606 GGTTCACACTCTAGCTCTGCA 59.726 52.381 0.00 0.00 0.00 4.41
2052 2251 2.605030 GTTCACACTCTAGCTCTGCAG 58.395 52.381 7.63 7.63 0.00 4.41
2053 2252 2.206576 TCACACTCTAGCTCTGCAGA 57.793 50.000 17.19 17.19 0.00 4.26
2054 2253 2.732763 TCACACTCTAGCTCTGCAGAT 58.267 47.619 18.63 5.89 0.00 2.90
2055 2254 2.687425 TCACACTCTAGCTCTGCAGATC 59.313 50.000 18.63 13.85 0.00 2.75
2056 2255 2.031120 ACACTCTAGCTCTGCAGATCC 58.969 52.381 18.63 11.54 0.00 3.36
2057 2256 2.030371 CACTCTAGCTCTGCAGATCCA 58.970 52.381 18.63 0.31 0.00 3.41
2058 2257 2.031120 ACTCTAGCTCTGCAGATCCAC 58.969 52.381 18.63 7.45 0.00 4.02
2059 2258 1.340889 CTCTAGCTCTGCAGATCCACC 59.659 57.143 18.63 3.76 0.00 4.61
2060 2259 1.117994 CTAGCTCTGCAGATCCACCA 58.882 55.000 18.63 0.00 0.00 4.17
2061 2260 0.826715 TAGCTCTGCAGATCCACCAC 59.173 55.000 18.63 1.24 0.00 4.16
2062 2261 1.196766 AGCTCTGCAGATCCACCACA 61.197 55.000 18.63 0.00 0.00 4.17
2063 2262 1.023513 GCTCTGCAGATCCACCACAC 61.024 60.000 18.63 0.00 0.00 3.82
2064 2263 0.322648 CTCTGCAGATCCACCACACA 59.677 55.000 18.63 0.00 0.00 3.72
2065 2264 0.035317 TCTGCAGATCCACCACACAC 59.965 55.000 13.74 0.00 0.00 3.82
2066 2265 0.035881 CTGCAGATCCACCACACACT 59.964 55.000 8.42 0.00 0.00 3.55
2067 2266 1.276138 CTGCAGATCCACCACACACTA 59.724 52.381 8.42 0.00 0.00 2.74
2068 2267 1.276138 TGCAGATCCACCACACACTAG 59.724 52.381 0.00 0.00 0.00 2.57
2069 2268 1.550524 GCAGATCCACCACACACTAGA 59.449 52.381 0.00 0.00 0.00 2.43
2070 2269 2.028112 GCAGATCCACCACACACTAGAA 60.028 50.000 0.00 0.00 0.00 2.10
2094 2293 1.777941 ACTAAGAAGACTAGGCCCGG 58.222 55.000 0.00 0.00 0.00 5.73
2114 2313 3.779444 GGAAGGGATTCTTTTTCCTGGT 58.221 45.455 0.00 0.00 36.88 4.00
2163 2362 5.390040 CCTGTAAAAATTACGCGTGTGATGA 60.390 40.000 24.59 0.00 0.00 2.92
2169 2368 2.143008 TACGCGTGTGATGAAAGTGT 57.857 45.000 24.59 0.00 0.00 3.55
2176 2375 3.718864 CGTGTGATGAAAGTGTTTCGTTG 59.281 43.478 0.00 0.00 42.55 4.10
2224 2425 1.455786 CGTGTGGATTTGACGAGTGTC 59.544 52.381 0.00 0.00 45.71 3.67
2256 2457 8.920174 TGGTAGAACCTTCGATCATATCTTTTA 58.080 33.333 0.00 0.00 39.58 1.52
2465 2684 2.217750 CTCGATCATCTCTCGGTGTCT 58.782 52.381 0.00 0.00 36.78 3.41
2468 2687 1.611491 GATCATCTCTCGGTGTCTCCC 59.389 57.143 0.00 0.00 0.00 4.30
2475 2694 2.978824 CGGTGTCTCCCGTTCCAT 59.021 61.111 0.00 0.00 43.07 3.41
2483 3244 1.004230 TCCCGTTCCATCCCCATCT 59.996 57.895 0.00 0.00 0.00 2.90
2556 3325 2.851102 CATCGGAGCCCTCCCCAT 60.851 66.667 8.68 0.00 46.96 4.00
2557 3326 2.851102 ATCGGAGCCCTCCCCATG 60.851 66.667 8.68 0.00 46.96 3.66
2616 3388 2.787249 GTAGCCGACGCGTCTACA 59.213 61.111 33.94 15.46 41.18 2.74
2628 3400 3.449227 TCTACACGCCCCAGCTCG 61.449 66.667 0.00 0.00 36.60 5.03
2637 3409 3.073735 CCCAGCTCGCAGTCTCCT 61.074 66.667 0.00 0.00 0.00 3.69
2650 3422 0.820871 GTCTCCTCGCCTCAGTGATT 59.179 55.000 0.00 0.00 0.00 2.57
2660 3432 2.420547 GCCTCAGTGATTGATAGGTGCA 60.421 50.000 0.00 0.00 34.68 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.202451 TGTGAATTGTGATGAAGTCAGGGA 60.202 41.667 0.00 0.00 37.56 4.20
2 3 5.240183 AGTTGTGAATTGTGATGAAGTCAGG 59.760 40.000 0.00 0.00 37.56 3.86
18 19 9.986833 CGATTTGATGACATTTATAGTTGTGAA 57.013 29.630 0.00 0.00 0.00 3.18
19 20 9.161629 ACGATTTGATGACATTTATAGTTGTGA 57.838 29.630 0.00 0.00 0.00 3.58
20 21 9.773328 AACGATTTGATGACATTTATAGTTGTG 57.227 29.630 0.00 0.00 0.00 3.33
23 24 9.289303 GCAAACGATTTGATGACATTTATAGTT 57.711 29.630 12.62 0.00 43.26 2.24
24 25 8.458052 TGCAAACGATTTGATGACATTTATAGT 58.542 29.630 12.62 0.00 43.26 2.12
25 26 8.839947 TGCAAACGATTTGATGACATTTATAG 57.160 30.769 12.62 0.00 43.26 1.31
26 27 9.235537 CATGCAAACGATTTGATGACATTTATA 57.764 29.630 12.62 0.00 43.26 0.98
27 28 7.760794 ACATGCAAACGATTTGATGACATTTAT 59.239 29.630 12.62 0.00 43.26 1.40
28 29 7.062022 CACATGCAAACGATTTGATGACATTTA 59.938 33.333 12.62 0.00 43.26 1.40
29 30 5.927689 ACATGCAAACGATTTGATGACATTT 59.072 32.000 12.62 0.83 43.26 2.32
30 31 5.346551 CACATGCAAACGATTTGATGACATT 59.653 36.000 12.62 0.00 43.26 2.71
31 32 4.860352 CACATGCAAACGATTTGATGACAT 59.140 37.500 12.62 0.00 43.26 3.06
32 33 4.228317 CACATGCAAACGATTTGATGACA 58.772 39.130 12.62 3.91 43.26 3.58
33 34 3.059834 GCACATGCAAACGATTTGATGAC 59.940 43.478 12.62 8.40 43.26 3.06
34 35 3.244156 GCACATGCAAACGATTTGATGA 58.756 40.909 12.62 0.00 43.26 2.92
35 36 2.346244 GGCACATGCAAACGATTTGATG 59.654 45.455 6.15 13.42 43.26 3.07
36 37 2.029200 TGGCACATGCAAACGATTTGAT 60.029 40.909 6.15 3.56 43.26 2.57
37 38 1.339291 TGGCACATGCAAACGATTTGA 59.661 42.857 6.15 1.84 43.26 2.69
38 39 1.456544 GTGGCACATGCAAACGATTTG 59.543 47.619 13.86 0.00 44.52 2.32
39 40 1.605202 GGTGGCACATGCAAACGATTT 60.605 47.619 20.82 0.00 44.52 2.17
40 41 0.038343 GGTGGCACATGCAAACGATT 60.038 50.000 20.82 0.00 44.52 3.34
41 42 0.895100 AGGTGGCACATGCAAACGAT 60.895 50.000 20.82 0.00 44.52 3.73
42 43 1.106351 AAGGTGGCACATGCAAACGA 61.106 50.000 20.82 0.00 44.52 3.85
43 44 0.664166 GAAGGTGGCACATGCAAACG 60.664 55.000 20.82 0.00 44.52 3.60
44 45 0.319813 GGAAGGTGGCACATGCAAAC 60.320 55.000 20.82 0.00 44.52 2.93
45 46 1.470996 GGGAAGGTGGCACATGCAAA 61.471 55.000 20.82 0.00 44.52 3.68
46 47 1.907807 GGGAAGGTGGCACATGCAA 60.908 57.895 20.82 0.00 44.52 4.08
47 48 2.283101 GGGAAGGTGGCACATGCA 60.283 61.111 20.82 0.00 44.52 3.96
48 49 2.036256 AGGGAAGGTGGCACATGC 59.964 61.111 20.82 11.49 44.52 4.06
49 50 1.679977 CCAGGGAAGGTGGCACATG 60.680 63.158 20.82 7.48 44.52 3.21
50 51 2.765969 CCAGGGAAGGTGGCACAT 59.234 61.111 20.82 10.11 44.52 3.21
55 56 0.625849 ATGTTAGCCAGGGAAGGTGG 59.374 55.000 0.00 0.00 38.21 4.61
56 57 2.369394 GAATGTTAGCCAGGGAAGGTG 58.631 52.381 0.00 0.00 0.00 4.00
57 58 1.065418 CGAATGTTAGCCAGGGAAGGT 60.065 52.381 0.00 0.00 0.00 3.50
58 59 1.668419 CGAATGTTAGCCAGGGAAGG 58.332 55.000 0.00 0.00 0.00 3.46
59 60 1.017387 GCGAATGTTAGCCAGGGAAG 58.983 55.000 0.00 0.00 0.00 3.46
60 61 0.618458 AGCGAATGTTAGCCAGGGAA 59.382 50.000 0.00 0.00 0.00 3.97
61 62 1.412710 CTAGCGAATGTTAGCCAGGGA 59.587 52.381 0.00 0.00 0.00 4.20
62 63 1.139058 ACTAGCGAATGTTAGCCAGGG 59.861 52.381 0.00 0.00 32.59 4.45
63 64 2.604046 ACTAGCGAATGTTAGCCAGG 57.396 50.000 0.00 0.00 32.59 4.45
64 65 4.051922 CCTAACTAGCGAATGTTAGCCAG 58.948 47.826 13.01 0.00 42.30 4.85
65 66 3.702548 TCCTAACTAGCGAATGTTAGCCA 59.297 43.478 13.01 3.63 42.30 4.75
66 67 4.299978 CTCCTAACTAGCGAATGTTAGCC 58.700 47.826 13.01 0.00 42.30 3.93
67 68 4.299978 CCTCCTAACTAGCGAATGTTAGC 58.700 47.826 13.01 0.00 42.30 3.09
68 69 4.341520 ACCCTCCTAACTAGCGAATGTTAG 59.658 45.833 12.05 12.05 42.90 2.34
69 70 4.284178 ACCCTCCTAACTAGCGAATGTTA 58.716 43.478 0.00 0.00 0.00 2.41
70 71 3.105283 ACCCTCCTAACTAGCGAATGTT 58.895 45.455 0.00 0.00 0.00 2.71
71 72 2.694109 GACCCTCCTAACTAGCGAATGT 59.306 50.000 0.00 0.00 0.00 2.71
72 73 2.036089 GGACCCTCCTAACTAGCGAATG 59.964 54.545 0.00 0.00 32.53 2.67
73 74 2.317973 GGACCCTCCTAACTAGCGAAT 58.682 52.381 0.00 0.00 32.53 3.34
74 75 1.772836 GGACCCTCCTAACTAGCGAA 58.227 55.000 0.00 0.00 32.53 4.70
75 76 3.509517 GGACCCTCCTAACTAGCGA 57.490 57.895 0.00 0.00 32.53 4.93
85 86 7.956328 AAACATCTTAATTTTAGGACCCTCC 57.044 36.000 0.00 0.00 36.58 4.30
86 87 8.622157 GCTAAACATCTTAATTTTAGGACCCTC 58.378 37.037 0.00 0.00 34.64 4.30
87 88 8.336987 AGCTAAACATCTTAATTTTAGGACCCT 58.663 33.333 0.00 0.00 34.64 4.34
88 89 8.521170 AGCTAAACATCTTAATTTTAGGACCC 57.479 34.615 0.00 0.00 34.64 4.46
135 136 9.213777 TGGTAGAAAGGATGAGACAGTATATTT 57.786 33.333 0.00 0.00 0.00 1.40
136 137 8.643324 GTGGTAGAAAGGATGAGACAGTATATT 58.357 37.037 0.00 0.00 0.00 1.28
137 138 7.233757 GGTGGTAGAAAGGATGAGACAGTATAT 59.766 40.741 0.00 0.00 0.00 0.86
138 139 6.550108 GGTGGTAGAAAGGATGAGACAGTATA 59.450 42.308 0.00 0.00 0.00 1.47
139 140 5.364157 GGTGGTAGAAAGGATGAGACAGTAT 59.636 44.000 0.00 0.00 0.00 2.12
140 141 4.710375 GGTGGTAGAAAGGATGAGACAGTA 59.290 45.833 0.00 0.00 0.00 2.74
141 142 3.515901 GGTGGTAGAAAGGATGAGACAGT 59.484 47.826 0.00 0.00 0.00 3.55
142 143 3.118592 GGGTGGTAGAAAGGATGAGACAG 60.119 52.174 0.00 0.00 0.00 3.51
143 144 2.838202 GGGTGGTAGAAAGGATGAGACA 59.162 50.000 0.00 0.00 0.00 3.41
144 145 3.108376 AGGGTGGTAGAAAGGATGAGAC 58.892 50.000 0.00 0.00 0.00 3.36
145 146 3.107601 CAGGGTGGTAGAAAGGATGAGA 58.892 50.000 0.00 0.00 0.00 3.27
146 147 3.107601 TCAGGGTGGTAGAAAGGATGAG 58.892 50.000 0.00 0.00 0.00 2.90
147 148 3.199442 TCAGGGTGGTAGAAAGGATGA 57.801 47.619 0.00 0.00 0.00 2.92
148 149 5.131142 AGTTATCAGGGTGGTAGAAAGGATG 59.869 44.000 0.00 0.00 0.00 3.51
149 150 5.131142 CAGTTATCAGGGTGGTAGAAAGGAT 59.869 44.000 0.00 0.00 0.00 3.24
150 151 4.469945 CAGTTATCAGGGTGGTAGAAAGGA 59.530 45.833 0.00 0.00 0.00 3.36
151 152 4.384208 CCAGTTATCAGGGTGGTAGAAAGG 60.384 50.000 0.00 0.00 0.00 3.11
152 153 4.225267 ACCAGTTATCAGGGTGGTAGAAAG 59.775 45.833 0.00 0.00 41.65 2.62
153 154 4.019681 CACCAGTTATCAGGGTGGTAGAAA 60.020 45.833 0.00 0.00 46.51 2.52
154 155 3.517901 CACCAGTTATCAGGGTGGTAGAA 59.482 47.826 0.00 0.00 46.51 2.10
155 156 3.104512 CACCAGTTATCAGGGTGGTAGA 58.895 50.000 0.00 0.00 46.51 2.59
156 157 3.543680 CACCAGTTATCAGGGTGGTAG 57.456 52.381 0.00 0.00 46.51 3.18
161 162 1.286248 GGTCCACCAGTTATCAGGGT 58.714 55.000 0.00 0.00 35.64 4.34
162 163 0.546598 GGGTCCACCAGTTATCAGGG 59.453 60.000 0.00 0.00 39.85 4.45
163 164 1.285280 TGGGTCCACCAGTTATCAGG 58.715 55.000 0.00 0.00 46.80 3.86
174 175 2.287977 AAAAAGCTAGGTGGGTCCAC 57.712 50.000 11.47 11.47 45.49 4.02
175 176 3.332485 ACATAAAAAGCTAGGTGGGTCCA 59.668 43.478 0.00 0.00 39.02 4.02
176 177 3.694566 CACATAAAAAGCTAGGTGGGTCC 59.305 47.826 0.00 0.00 31.51 4.46
177 178 3.128764 GCACATAAAAAGCTAGGTGGGTC 59.871 47.826 0.00 0.00 34.83 4.46
178 179 3.089284 GCACATAAAAAGCTAGGTGGGT 58.911 45.455 0.00 0.00 34.83 4.51
179 180 3.088532 TGCACATAAAAAGCTAGGTGGG 58.911 45.455 0.00 0.00 34.83 4.61
180 181 4.989279 ATGCACATAAAAAGCTAGGTGG 57.011 40.909 0.00 0.00 34.83 4.61
181 182 5.504010 CGGTATGCACATAAAAAGCTAGGTG 60.504 44.000 0.00 0.00 36.80 4.00
182 183 4.574828 CGGTATGCACATAAAAAGCTAGGT 59.425 41.667 0.00 0.00 0.00 3.08
183 184 4.814234 TCGGTATGCACATAAAAAGCTAGG 59.186 41.667 0.00 0.00 0.00 3.02
184 185 5.984233 TCGGTATGCACATAAAAAGCTAG 57.016 39.130 0.00 0.00 0.00 3.42
185 186 7.306925 CGTTATCGGTATGCACATAAAAAGCTA 60.307 37.037 0.00 0.00 0.00 3.32
186 187 6.511121 CGTTATCGGTATGCACATAAAAAGCT 60.511 38.462 0.00 0.00 0.00 3.74
187 188 5.619607 CGTTATCGGTATGCACATAAAAAGC 59.380 40.000 0.00 0.00 0.00 3.51
188 189 6.711579 ACGTTATCGGTATGCACATAAAAAG 58.288 36.000 0.00 0.00 41.85 2.27
189 190 6.665474 ACGTTATCGGTATGCACATAAAAA 57.335 33.333 0.00 0.00 41.85 1.94
190 191 6.665474 AACGTTATCGGTATGCACATAAAA 57.335 33.333 0.00 0.00 41.85 1.52
191 192 6.313164 TGAAACGTTATCGGTATGCACATAAA 59.687 34.615 0.00 0.00 41.85 1.40
192 193 5.811100 TGAAACGTTATCGGTATGCACATAA 59.189 36.000 0.00 0.00 41.85 1.90
193 194 5.349809 TGAAACGTTATCGGTATGCACATA 58.650 37.500 0.00 0.00 41.85 2.29
194 195 4.185394 TGAAACGTTATCGGTATGCACAT 58.815 39.130 0.00 0.00 41.85 3.21
195 196 3.586892 TGAAACGTTATCGGTATGCACA 58.413 40.909 0.00 0.00 41.85 4.57
196 197 3.000925 CCTGAAACGTTATCGGTATGCAC 59.999 47.826 0.00 0.00 41.85 4.57
197 198 3.191669 CCTGAAACGTTATCGGTATGCA 58.808 45.455 0.00 0.00 41.85 3.96
198 199 3.192466 ACCTGAAACGTTATCGGTATGC 58.808 45.455 0.00 0.00 41.85 3.14
199 200 5.404366 CCATACCTGAAACGTTATCGGTATG 59.596 44.000 31.31 31.31 43.87 2.39
200 201 5.069516 ACCATACCTGAAACGTTATCGGTAT 59.930 40.000 20.66 20.66 41.85 2.73
201 202 4.402155 ACCATACCTGAAACGTTATCGGTA 59.598 41.667 18.73 18.73 41.85 4.02
202 203 3.196254 ACCATACCTGAAACGTTATCGGT 59.804 43.478 16.32 16.32 41.85 4.69
203 204 3.788937 ACCATACCTGAAACGTTATCGG 58.211 45.455 0.00 6.76 41.85 4.18
204 205 4.269363 GGAACCATACCTGAAACGTTATCG 59.731 45.833 0.00 0.00 43.34 2.92
205 206 5.425630 AGGAACCATACCTGAAACGTTATC 58.574 41.667 0.00 2.33 36.30 1.75
206 207 5.431179 AGGAACCATACCTGAAACGTTAT 57.569 39.130 0.00 0.00 36.30 1.89
207 208 4.895668 AGGAACCATACCTGAAACGTTA 57.104 40.909 0.00 0.00 36.30 3.18
208 209 3.782656 AGGAACCATACCTGAAACGTT 57.217 42.857 0.00 0.00 36.30 3.99
209 210 3.782656 AAGGAACCATACCTGAAACGT 57.217 42.857 0.00 0.00 37.85 3.99
210 211 3.124636 CGAAAGGAACCATACCTGAAACG 59.875 47.826 0.00 0.00 37.85 3.60
211 212 4.680171 CGAAAGGAACCATACCTGAAAC 57.320 45.455 0.00 0.00 37.85 2.78
238 239 7.227873 ACAAGGAAACCCAAAAAGAAGAAAAA 58.772 30.769 0.00 0.00 0.00 1.94
239 240 6.774673 ACAAGGAAACCCAAAAAGAAGAAAA 58.225 32.000 0.00 0.00 0.00 2.29
240 241 6.367374 ACAAGGAAACCCAAAAAGAAGAAA 57.633 33.333 0.00 0.00 0.00 2.52
241 242 6.404954 CGTACAAGGAAACCCAAAAAGAAGAA 60.405 38.462 0.00 0.00 0.00 2.52
242 243 5.066764 CGTACAAGGAAACCCAAAAAGAAGA 59.933 40.000 0.00 0.00 0.00 2.87
243 244 5.278604 CGTACAAGGAAACCCAAAAAGAAG 58.721 41.667 0.00 0.00 0.00 2.85
244 245 4.098196 CCGTACAAGGAAACCCAAAAAGAA 59.902 41.667 0.00 0.00 0.00 2.52
245 246 3.633065 CCGTACAAGGAAACCCAAAAAGA 59.367 43.478 0.00 0.00 0.00 2.52
246 247 3.382227 ACCGTACAAGGAAACCCAAAAAG 59.618 43.478 0.00 0.00 34.73 2.27
247 248 3.363627 ACCGTACAAGGAAACCCAAAAA 58.636 40.909 0.00 0.00 34.73 1.94
248 249 3.015675 ACCGTACAAGGAAACCCAAAA 57.984 42.857 0.00 0.00 34.73 2.44
249 250 2.732844 ACCGTACAAGGAAACCCAAA 57.267 45.000 0.00 0.00 34.73 3.28
250 251 2.092538 TGAACCGTACAAGGAAACCCAA 60.093 45.455 0.00 0.00 34.73 4.12
251 252 1.489649 TGAACCGTACAAGGAAACCCA 59.510 47.619 0.00 0.00 34.73 4.51
252 253 2.259266 TGAACCGTACAAGGAAACCC 57.741 50.000 0.00 0.00 34.73 4.11
253 254 3.435671 CAGATGAACCGTACAAGGAAACC 59.564 47.826 0.00 0.00 34.73 3.27
254 255 4.062991 ACAGATGAACCGTACAAGGAAAC 58.937 43.478 0.00 0.00 34.73 2.78
255 256 4.345859 ACAGATGAACCGTACAAGGAAA 57.654 40.909 0.00 0.00 34.73 3.13
256 257 4.345859 AACAGATGAACCGTACAAGGAA 57.654 40.909 0.00 0.00 34.73 3.36
257 258 4.345859 AAACAGATGAACCGTACAAGGA 57.654 40.909 0.00 0.00 34.73 3.36
258 259 5.432885 AAAAACAGATGAACCGTACAAGG 57.567 39.130 0.00 0.00 37.30 3.61
277 278 9.781834 CGATTAAACCATACATGAAGCTAAAAA 57.218 29.630 0.00 0.00 0.00 1.94
278 279 8.402472 CCGATTAAACCATACATGAAGCTAAAA 58.598 33.333 0.00 0.00 0.00 1.52
279 280 7.554835 ACCGATTAAACCATACATGAAGCTAAA 59.445 33.333 0.00 0.00 0.00 1.85
280 281 7.051623 ACCGATTAAACCATACATGAAGCTAA 58.948 34.615 0.00 0.00 0.00 3.09
281 282 6.588204 ACCGATTAAACCATACATGAAGCTA 58.412 36.000 0.00 0.00 0.00 3.32
282 283 5.437060 ACCGATTAAACCATACATGAAGCT 58.563 37.500 0.00 0.00 0.00 3.74
283 284 5.751243 ACCGATTAAACCATACATGAAGC 57.249 39.130 0.00 0.00 0.00 3.86
284 285 8.458843 AGAAAACCGATTAAACCATACATGAAG 58.541 33.333 0.00 0.00 0.00 3.02
285 286 8.343168 AGAAAACCGATTAAACCATACATGAA 57.657 30.769 0.00 0.00 0.00 2.57
286 287 7.931578 AGAAAACCGATTAAACCATACATGA 57.068 32.000 0.00 0.00 0.00 3.07
287 288 7.700656 GGAAGAAAACCGATTAAACCATACATG 59.299 37.037 0.00 0.00 0.00 3.21
288 289 7.394923 TGGAAGAAAACCGATTAAACCATACAT 59.605 33.333 0.00 0.00 0.00 2.29
289 290 6.715718 TGGAAGAAAACCGATTAAACCATACA 59.284 34.615 0.00 0.00 0.00 2.29
290 291 7.148355 TGGAAGAAAACCGATTAAACCATAC 57.852 36.000 0.00 0.00 0.00 2.39
291 292 7.948034 ATGGAAGAAAACCGATTAAACCATA 57.052 32.000 0.00 0.00 33.52 2.74
292 293 6.850752 ATGGAAGAAAACCGATTAAACCAT 57.149 33.333 0.00 0.00 0.00 3.55
293 294 6.658188 AATGGAAGAAAACCGATTAAACCA 57.342 33.333 0.00 0.00 0.00 3.67
294 295 7.956420 AAAATGGAAGAAAACCGATTAAACC 57.044 32.000 0.00 0.00 0.00 3.27
299 300 9.607988 AACTTTAAAAATGGAAGAAAACCGATT 57.392 25.926 0.00 0.00 0.00 3.34
300 301 9.256477 GAACTTTAAAAATGGAAGAAAACCGAT 57.744 29.630 0.00 0.00 0.00 4.18
301 302 8.251721 TGAACTTTAAAAATGGAAGAAAACCGA 58.748 29.630 0.00 0.00 0.00 4.69
302 303 8.413899 TGAACTTTAAAAATGGAAGAAAACCG 57.586 30.769 0.00 0.00 0.00 4.44
344 345 9.420551 AGACCAACACGTTTTACAATTTTAAAA 57.579 25.926 2.51 2.51 0.00 1.52
345 346 8.983307 AGACCAACACGTTTTACAATTTTAAA 57.017 26.923 0.00 0.00 0.00 1.52
348 349 9.589111 AAATAGACCAACACGTTTTACAATTTT 57.411 25.926 0.00 0.00 0.00 1.82
349 350 9.589111 AAAATAGACCAACACGTTTTACAATTT 57.411 25.926 0.00 0.00 0.00 1.82
350 351 9.026074 CAAAATAGACCAACACGTTTTACAATT 57.974 29.630 0.00 0.00 0.00 2.32
351 352 8.407064 TCAAAATAGACCAACACGTTTTACAAT 58.593 29.630 0.00 0.00 0.00 2.71
352 353 7.759465 TCAAAATAGACCAACACGTTTTACAA 58.241 30.769 0.00 0.00 0.00 2.41
353 354 7.280428 TCTCAAAATAGACCAACACGTTTTACA 59.720 33.333 0.00 0.00 0.00 2.41
354 355 7.632721 TCTCAAAATAGACCAACACGTTTTAC 58.367 34.615 0.00 0.00 0.00 2.01
355 356 7.789273 TCTCAAAATAGACCAACACGTTTTA 57.211 32.000 0.00 0.00 0.00 1.52
356 357 6.687081 TCTCAAAATAGACCAACACGTTTT 57.313 33.333 0.00 0.00 0.00 2.43
357 358 6.687081 TTCTCAAAATAGACCAACACGTTT 57.313 33.333 0.00 0.00 0.00 3.60
358 359 6.687081 TTTCTCAAAATAGACCAACACGTT 57.313 33.333 0.00 0.00 0.00 3.99
359 360 6.687081 TTTTCTCAAAATAGACCAACACGT 57.313 33.333 0.00 0.00 0.00 4.49
400 401 9.965824 CAACCATTTTCTAACTAGTCAACATTT 57.034 29.630 0.00 0.00 0.00 2.32
401 402 9.131791 ACAACCATTTTCTAACTAGTCAACATT 57.868 29.630 0.00 0.00 0.00 2.71
402 403 8.567948 CACAACCATTTTCTAACTAGTCAACAT 58.432 33.333 0.00 0.00 0.00 2.71
403 404 7.554835 ACACAACCATTTTCTAACTAGTCAACA 59.445 33.333 0.00 0.00 0.00 3.33
404 405 7.927048 ACACAACCATTTTCTAACTAGTCAAC 58.073 34.615 0.00 0.00 0.00 3.18
405 406 9.787435 ATACACAACCATTTTCTAACTAGTCAA 57.213 29.630 0.00 0.00 0.00 3.18
406 407 9.787435 AATACACAACCATTTTCTAACTAGTCA 57.213 29.630 0.00 0.00 0.00 3.41
411 412 9.131791 ACTGAAATACACAACCATTTTCTAACT 57.868 29.630 0.00 0.00 0.00 2.24
414 415 9.787435 ACTACTGAAATACACAACCATTTTCTA 57.213 29.630 0.00 0.00 0.00 2.10
415 416 8.691661 ACTACTGAAATACACAACCATTTTCT 57.308 30.769 0.00 0.00 0.00 2.52
416 417 9.394477 GAACTACTGAAATACACAACCATTTTC 57.606 33.333 0.00 0.00 0.00 2.29
417 418 8.908903 TGAACTACTGAAATACACAACCATTTT 58.091 29.630 0.00 0.00 0.00 1.82
418 419 8.458573 TGAACTACTGAAATACACAACCATTT 57.541 30.769 0.00 0.00 0.00 2.32
419 420 8.349983 GTTGAACTACTGAAATACACAACCATT 58.650 33.333 0.00 0.00 32.11 3.16
420 421 7.500892 TGTTGAACTACTGAAATACACAACCAT 59.499 33.333 0.00 0.00 35.69 3.55
421 422 6.824196 TGTTGAACTACTGAAATACACAACCA 59.176 34.615 0.00 0.00 35.69 3.67
422 423 7.254227 TGTTGAACTACTGAAATACACAACC 57.746 36.000 0.00 0.00 35.69 3.77
423 424 9.730420 ATTTGTTGAACTACTGAAATACACAAC 57.270 29.630 0.00 0.00 36.62 3.32
526 527 9.967346 TGAACATTGTTTTAATATCCACGAAAA 57.033 25.926 3.08 0.00 0.00 2.29
528 529 9.781834 GATGAACATTGTTTTAATATCCACGAA 57.218 29.630 3.08 0.00 0.00 3.85
529 530 9.173021 AGATGAACATTGTTTTAATATCCACGA 57.827 29.630 3.08 0.00 0.00 4.35
530 531 9.787532 AAGATGAACATTGTTTTAATATCCACG 57.212 29.630 3.08 0.00 0.00 4.94
538 539 9.729023 CACAGTACAAGATGAACATTGTTTTAA 57.271 29.630 3.08 0.00 40.09 1.52
539 540 9.114952 TCACAGTACAAGATGAACATTGTTTTA 57.885 29.630 3.08 0.00 40.09 1.52
540 541 7.995289 TCACAGTACAAGATGAACATTGTTTT 58.005 30.769 3.08 0.00 40.09 2.43
541 542 7.566760 TCACAGTACAAGATGAACATTGTTT 57.433 32.000 3.08 0.00 40.09 2.83
542 543 7.566760 TTCACAGTACAAGATGAACATTGTT 57.433 32.000 0.63 0.63 40.09 2.83
543 544 7.066887 TGTTTCACAGTACAAGATGAACATTGT 59.933 33.333 0.00 0.00 42.15 2.71
544 545 7.416817 TGTTTCACAGTACAAGATGAACATTG 58.583 34.615 0.00 0.00 30.99 2.82
545 546 7.566760 TGTTTCACAGTACAAGATGAACATT 57.433 32.000 0.00 0.00 30.99 2.71
546 547 7.566760 TTGTTTCACAGTACAAGATGAACAT 57.433 32.000 0.00 0.00 30.99 2.71
547 548 6.993786 TTGTTTCACAGTACAAGATGAACA 57.006 33.333 0.00 0.00 30.99 3.18
548 549 7.417612 ACATTGTTTCACAGTACAAGATGAAC 58.582 34.615 0.00 0.00 37.64 3.18
549 550 7.566760 ACATTGTTTCACAGTACAAGATGAA 57.433 32.000 0.00 0.00 37.64 2.57
550 551 7.566760 AACATTGTTTCACAGTACAAGATGA 57.433 32.000 0.00 0.00 37.64 2.92
551 552 9.169468 GTAAACATTGTTTCACAGTACAAGATG 57.831 33.333 17.64 0.00 37.64 2.90
552 553 8.898761 TGTAAACATTGTTTCACAGTACAAGAT 58.101 29.630 17.64 0.00 37.64 2.40
553 554 8.270080 TGTAAACATTGTTTCACAGTACAAGA 57.730 30.769 17.64 0.00 37.64 3.02
554 555 8.903570 TTGTAAACATTGTTTCACAGTACAAG 57.096 30.769 17.64 0.00 37.64 3.16
555 556 9.862371 ATTTGTAAACATTGTTTCACAGTACAA 57.138 25.926 17.64 16.89 38.50 2.41
556 557 9.862371 AATTTGTAAACATTGTTTCACAGTACA 57.138 25.926 17.64 12.43 0.00 2.90
589 590 6.265196 TCTGTGAATGAGTTGGTAGCATTTTT 59.735 34.615 0.00 0.00 32.80 1.94
590 591 5.769662 TCTGTGAATGAGTTGGTAGCATTTT 59.230 36.000 0.00 0.00 32.80 1.82
591 592 5.316167 TCTGTGAATGAGTTGGTAGCATTT 58.684 37.500 0.00 0.00 32.80 2.32
592 593 4.910195 TCTGTGAATGAGTTGGTAGCATT 58.090 39.130 0.00 0.00 35.14 3.56
593 594 4.558226 TCTGTGAATGAGTTGGTAGCAT 57.442 40.909 0.00 0.00 0.00 3.79
594 595 4.558226 ATCTGTGAATGAGTTGGTAGCA 57.442 40.909 0.00 0.00 0.00 3.49
595 596 5.886960 AAATCTGTGAATGAGTTGGTAGC 57.113 39.130 0.00 0.00 0.00 3.58
630 631 9.805966 CGGCCTTTTATTTATTTTTCACTTTTC 57.194 29.630 0.00 0.00 0.00 2.29
631 632 8.286800 GCGGCCTTTTATTTATTTTTCACTTTT 58.713 29.630 0.00 0.00 0.00 2.27
632 633 7.659799 AGCGGCCTTTTATTTATTTTTCACTTT 59.340 29.630 0.00 0.00 0.00 2.66
633 634 7.158697 AGCGGCCTTTTATTTATTTTTCACTT 58.841 30.769 0.00 0.00 0.00 3.16
634 635 6.697395 AGCGGCCTTTTATTTATTTTTCACT 58.303 32.000 0.00 0.00 0.00 3.41
635 636 6.961359 AGCGGCCTTTTATTTATTTTTCAC 57.039 33.333 0.00 0.00 0.00 3.18
636 637 8.308207 AGTAAGCGGCCTTTTATTTATTTTTCA 58.692 29.630 0.00 0.00 32.47 2.69
637 638 8.592155 CAGTAAGCGGCCTTTTATTTATTTTTC 58.408 33.333 0.00 0.00 32.47 2.29
646 647 5.408604 CGATATTCAGTAAGCGGCCTTTTAT 59.591 40.000 0.00 0.00 32.47 1.40
647 648 4.748102 CGATATTCAGTAAGCGGCCTTTTA 59.252 41.667 0.00 0.00 32.47 1.52
651 652 1.961394 TCGATATTCAGTAAGCGGCCT 59.039 47.619 0.00 0.00 0.00 5.19
652 653 2.059541 GTCGATATTCAGTAAGCGGCC 58.940 52.381 0.00 0.00 0.00 6.13
653 654 1.714460 CGTCGATATTCAGTAAGCGGC 59.286 52.381 0.00 0.00 0.00 6.53
654 655 3.263602 TCGTCGATATTCAGTAAGCGG 57.736 47.619 0.00 0.00 0.00 5.52
655 656 4.280461 AGTTCGTCGATATTCAGTAAGCG 58.720 43.478 0.00 0.00 0.00 4.68
665 669 6.352682 CTATGCTAGCTAGTTCGTCGATAT 57.647 41.667 21.62 0.00 0.00 1.63
666 670 5.781452 CTATGCTAGCTAGTTCGTCGATA 57.219 43.478 21.62 0.27 0.00 2.92
667 671 4.671880 CTATGCTAGCTAGTTCGTCGAT 57.328 45.455 21.62 0.00 0.00 3.59
677 681 6.009010 CAGTGAACTGGGCTATGCTAGCTA 62.009 50.000 17.23 2.58 42.92 3.32
678 682 5.313783 CAGTGAACTGGGCTATGCTAGCT 62.314 52.174 17.23 4.07 42.92 3.32
679 683 3.062361 CAGTGAACTGGGCTATGCTAGC 61.062 54.545 8.10 8.10 41.93 3.42
681 685 2.988010 CAGTGAACTGGGCTATGCTA 57.012 50.000 2.35 0.00 40.20 3.49
682 686 3.869623 CAGTGAACTGGGCTATGCT 57.130 52.632 2.35 0.00 40.20 3.79
691 695 2.416547 CGGCTATCAAACCAGTGAACTG 59.583 50.000 3.35 3.35 43.40 3.16
704 708 2.123033 TAGCTGGGCCGGCTATCA 60.123 61.111 37.31 22.36 45.07 2.15
729 733 1.202639 TCAGAGAAACGAAGCCTGCAA 60.203 47.619 0.00 0.00 0.00 4.08
731 735 1.195674 GTTCAGAGAAACGAAGCCTGC 59.804 52.381 0.00 0.00 0.00 4.85
733 737 1.605712 CGGTTCAGAGAAACGAAGCCT 60.606 52.381 11.42 0.00 36.51 4.58
735 739 1.499049 ACGGTTCAGAGAAACGAAGC 58.501 50.000 22.17 2.24 36.52 3.86
739 743 1.525619 GTGGAACGGTTCAGAGAAACG 59.474 52.381 21.36 14.84 0.00 3.60
771 776 3.144120 CTCAGCCTCCACGATCCGG 62.144 68.421 0.00 0.00 0.00 5.14
778 783 2.348998 CCACCACTCAGCCTCCAC 59.651 66.667 0.00 0.00 0.00 4.02
809 814 3.553922 CGCCTTGATCTCATCTACCTTCC 60.554 52.174 0.00 0.00 0.00 3.46
903 909 2.812619 GGAGGAGGAAGCCATCGGG 61.813 68.421 0.00 0.00 37.18 5.14
912 919 4.452363 GGGGGAGATATAAAGGAGGAGGAA 60.452 50.000 0.00 0.00 0.00 3.36
934 941 3.644606 AGCAGCCAGGTGGAGTGG 61.645 66.667 0.00 0.00 37.39 4.00
976 983 6.952014 CGTCGACGTGCAGTACAGTAGTAC 62.952 54.167 29.08 0.00 41.53 2.73
977 984 2.413112 GTCGACGTGCAGTACAGTAGTA 59.587 50.000 0.00 0.00 0.00 1.82
978 985 1.196354 GTCGACGTGCAGTACAGTAGT 59.804 52.381 0.00 0.00 0.00 2.73
979 986 1.785870 CGTCGACGTGCAGTACAGTAG 60.786 57.143 29.08 0.00 34.11 2.57
980 987 0.164432 CGTCGACGTGCAGTACAGTA 59.836 55.000 29.08 0.00 34.11 2.74
981 988 1.082300 CGTCGACGTGCAGTACAGT 60.082 57.895 29.08 0.00 34.11 3.55
1194 1241 1.654954 GCCTCAGCTGCCAGTCATTG 61.655 60.000 9.47 0.00 35.50 2.82
1195 1242 1.378250 GCCTCAGCTGCCAGTCATT 60.378 57.895 9.47 0.00 35.50 2.57
1640 1712 1.081774 GATGGATCGACGGAGCTCG 60.082 63.158 7.83 5.83 45.88 5.03
1651 1723 1.374758 GTCGGCCGATGGATGGATC 60.375 63.158 33.58 11.33 0.00 3.36
1664 1736 2.289547 ACAAATATGTAATGGCGTCGGC 59.710 45.455 12.58 12.58 38.24 5.54
1665 1737 3.558006 TGACAAATATGTAATGGCGTCGG 59.442 43.478 0.00 0.00 40.74 4.79
1666 1738 4.514506 GTGACAAATATGTAATGGCGTCG 58.485 43.478 0.00 0.00 40.74 5.12
1667 1739 4.574828 AGGTGACAAATATGTAATGGCGTC 59.425 41.667 0.00 0.00 40.74 5.19
1680 1752 2.228822 GCGGTCATTTCAGGTGACAAAT 59.771 45.455 8.33 0.00 45.99 2.32
1681 1753 1.606668 GCGGTCATTTCAGGTGACAAA 59.393 47.619 8.33 0.00 45.99 2.83
1682 1754 1.234821 GCGGTCATTTCAGGTGACAA 58.765 50.000 8.33 0.00 45.99 3.18
1683 1755 0.107643 TGCGGTCATTTCAGGTGACA 59.892 50.000 8.33 0.00 45.99 3.58
1684 1756 0.798776 CTGCGGTCATTTCAGGTGAC 59.201 55.000 0.00 0.00 44.01 3.67
1685 1757 0.321564 CCTGCGGTCATTTCAGGTGA 60.322 55.000 0.00 0.00 41.76 4.02
1687 1759 4.722193 CCTGCGGTCATTTCAGGT 57.278 55.556 0.00 0.00 41.76 4.00
1689 1761 1.466167 CTTCACCTGCGGTCATTTCAG 59.534 52.381 0.00 0.00 31.02 3.02
1690 1762 1.071542 TCTTCACCTGCGGTCATTTCA 59.928 47.619 0.00 0.00 31.02 2.69
1698 1848 0.603707 TTCAGCTTCTTCACCTGCGG 60.604 55.000 0.00 0.00 0.00 5.69
1808 1973 2.125106 GTGAGGCCATCCGTCCAC 60.125 66.667 5.01 0.00 37.47 4.02
1820 1985 1.064166 AGCAGGGATCAAATGGTGAGG 60.064 52.381 0.00 0.00 40.43 3.86
1838 2003 5.252969 TGGCACATTCTAATTCATCAAGC 57.747 39.130 0.00 0.00 0.00 4.01
1885 2050 7.228706 TGAAAACAAAACAGGGCAACTTAAAAA 59.771 29.630 0.00 0.00 0.00 1.94
1953 2142 7.611467 CCAAACATATATATGGGCACTACACAT 59.389 37.037 23.44 0.00 38.00 3.21
2037 2236 2.030371 TGGATCTGCAGAGCTAGAGTG 58.970 52.381 29.38 0.00 0.00 3.51
2050 2249 3.511540 TCTTCTAGTGTGTGGTGGATCTG 59.488 47.826 0.00 0.00 0.00 2.90
2051 2250 3.779444 TCTTCTAGTGTGTGGTGGATCT 58.221 45.455 0.00 0.00 0.00 2.75
2052 2251 4.537135 TTCTTCTAGTGTGTGGTGGATC 57.463 45.455 0.00 0.00 0.00 3.36
2053 2252 5.721960 AGTATTCTTCTAGTGTGTGGTGGAT 59.278 40.000 0.00 0.00 0.00 3.41
2054 2253 5.084519 AGTATTCTTCTAGTGTGTGGTGGA 58.915 41.667 0.00 0.00 0.00 4.02
2055 2254 5.407407 AGTATTCTTCTAGTGTGTGGTGG 57.593 43.478 0.00 0.00 0.00 4.61
2056 2255 7.827701 TCTTAGTATTCTTCTAGTGTGTGGTG 58.172 38.462 0.00 0.00 0.00 4.17
2057 2256 8.418597 TTCTTAGTATTCTTCTAGTGTGTGGT 57.581 34.615 0.00 0.00 0.00 4.16
2058 2257 8.740906 TCTTCTTAGTATTCTTCTAGTGTGTGG 58.259 37.037 0.00 0.00 0.00 4.17
2059 2258 9.562583 GTCTTCTTAGTATTCTTCTAGTGTGTG 57.437 37.037 0.00 0.00 0.00 3.82
2060 2259 9.523168 AGTCTTCTTAGTATTCTTCTAGTGTGT 57.477 33.333 0.00 0.00 0.00 3.72
2064 2263 9.346005 GCCTAGTCTTCTTAGTATTCTTCTAGT 57.654 37.037 0.00 0.00 0.00 2.57
2065 2264 8.789762 GGCCTAGTCTTCTTAGTATTCTTCTAG 58.210 40.741 0.00 0.00 0.00 2.43
2066 2265 7.724951 GGGCCTAGTCTTCTTAGTATTCTTCTA 59.275 40.741 0.84 0.00 0.00 2.10
2067 2266 6.551975 GGGCCTAGTCTTCTTAGTATTCTTCT 59.448 42.308 0.84 0.00 0.00 2.85
2068 2267 6.515365 CGGGCCTAGTCTTCTTAGTATTCTTC 60.515 46.154 0.84 0.00 0.00 2.87
2069 2268 5.302313 CGGGCCTAGTCTTCTTAGTATTCTT 59.698 44.000 0.84 0.00 0.00 2.52
2070 2269 4.828387 CGGGCCTAGTCTTCTTAGTATTCT 59.172 45.833 0.84 0.00 0.00 2.40
2094 2293 5.808366 AAACCAGGAAAAAGAATCCCTTC 57.192 39.130 0.00 0.00 37.71 3.46
2163 2362 1.533129 GCGAAGGCAACGAAACACTTT 60.533 47.619 7.45 0.00 46.39 2.66
2169 2368 1.008995 GCAAGCGAAGGCAACGAAA 60.009 52.632 7.45 0.00 43.41 3.46
2176 2375 3.194272 AAACGTGGCAAGCGAAGGC 62.194 57.895 4.40 0.00 40.37 4.35
2224 2425 0.999406 CGAAGGTTCTACCATGCGTG 59.001 55.000 0.00 0.00 41.95 5.34
2256 2457 2.659428 GCTACAGGCCCAAGATGAAAT 58.341 47.619 0.00 0.00 34.27 2.17
2446 2659 2.214347 GAGACACCGAGAGATGATCGA 58.786 52.381 0.00 0.00 42.76 3.59
2447 2660 1.265635 GGAGACACCGAGAGATGATCG 59.734 57.143 0.00 0.00 39.86 3.69
2448 2661 1.611491 GGGAGACACCGAGAGATGATC 59.389 57.143 0.00 0.00 40.11 2.92
2449 2662 1.698506 GGGAGACACCGAGAGATGAT 58.301 55.000 0.00 0.00 40.11 2.45
2465 2684 1.004230 AGATGGGGATGGAACGGGA 59.996 57.895 0.00 0.00 0.00 5.14
2468 2687 0.179045 GTGGAGATGGGGATGGAACG 60.179 60.000 0.00 0.00 0.00 3.95
2469 2688 0.183731 GGTGGAGATGGGGATGGAAC 59.816 60.000 0.00 0.00 0.00 3.62
2471 2690 1.385915 GGGTGGAGATGGGGATGGA 60.386 63.158 0.00 0.00 0.00 3.41
2474 2693 2.038330 GGGGGTGGAGATGGGGAT 60.038 66.667 0.00 0.00 0.00 3.85
2492 3255 1.291877 CGCTTCCGGAAACAGGACAG 61.292 60.000 19.39 4.63 37.53 3.51
2494 3257 2.677979 GCGCTTCCGGAAACAGGAC 61.678 63.158 19.39 2.90 37.53 3.85
2597 3369 3.566853 TAGACGCGTCGGCTACGG 61.567 66.667 31.56 6.15 46.54 4.02
2628 3400 2.347322 ACTGAGGCGAGGAGACTGC 61.347 63.158 0.00 0.00 44.43 4.40
2637 3409 2.101415 CACCTATCAATCACTGAGGCGA 59.899 50.000 0.00 0.00 37.52 5.54
2650 3422 3.072038 CCTCATCCATCTTGCACCTATCA 59.928 47.826 0.00 0.00 0.00 2.15
2660 3432 2.044469 GCTCCTCCCCTCATCCATCTT 61.044 57.143 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.