Multiple sequence alignment - TraesCS4A01G441900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G441900 chr4A 100.000 2702 0 0 1 2702 710175946 710173245 0.000000e+00 4990.0
1 TraesCS4A01G441900 chr4A 78.022 455 88 10 1863 2309 691156836 691156386 2.650000e-70 276.0
2 TraesCS4A01G441900 chr4A 78.406 389 64 11 1940 2309 637936756 637937143 4.500000e-58 235.0
3 TraesCS4A01G441900 chr4A 81.366 161 28 2 227 385 674363542 674363382 2.180000e-26 130.0
4 TraesCS4A01G441900 chr4A 81.250 160 27 1 1144 1300 625634244 625634403 2.820000e-25 126.0
5 TraesCS4A01G441900 chr4A 93.750 80 5 0 698 777 710175208 710175129 1.310000e-23 121.0
6 TraesCS4A01G441900 chr4A 93.750 80 5 0 739 818 710175249 710175170 1.310000e-23 121.0
7 TraesCS4A01G441900 chr4A 87.368 95 12 0 1145 1239 593204592 593204686 2.840000e-20 110.0
8 TraesCS4A01G441900 chr4A 100.000 31 0 0 696 726 710175169 710175139 1.040000e-04 58.4
9 TraesCS4A01G441900 chr4A 100.000 31 0 0 778 808 710175251 710175221 1.040000e-04 58.4
10 TraesCS4A01G441900 chr7A 92.493 1492 89 16 1074 2548 26665181 26663696 0.000000e+00 2113.0
11 TraesCS4A01G441900 chr7A 85.773 485 34 22 583 1066 26665612 26665162 5.230000e-132 481.0
12 TraesCS4A01G441900 chr7A 83.698 503 42 19 1 491 26666094 26665620 3.190000e-119 438.0
13 TraesCS4A01G441900 chr7A 76.010 421 75 14 1 416 61773747 61774146 7.630000e-46 195.0
14 TraesCS4A01G441900 chr7A 98.925 93 1 0 498 590 461522669 461522577 1.660000e-37 167.0
15 TraesCS4A01G441900 chr7A 86.813 91 8 3 2234 2321 107097066 107096977 6.160000e-17 99.0
16 TraesCS4A01G441900 chr7A 96.774 31 1 0 696 726 26665460 26665430 5.000000e-03 52.8
17 TraesCS4A01G441900 chr6D 81.384 419 69 7 2 418 149880909 149881320 1.550000e-87 333.0
18 TraesCS4A01G441900 chr6D 96.104 77 3 0 2626 2702 950959 950883 2.820000e-25 126.0
19 TraesCS4A01G441900 chr5A 79.605 456 83 6 1860 2307 120744912 120744459 4.340000e-83 318.0
20 TraesCS4A01G441900 chr5A 84.615 130 17 2 1 129 121662398 121662525 2.820000e-25 126.0
21 TraesCS4A01G441900 chr3A 83.387 313 46 5 1860 2168 171541201 171541511 4.400000e-73 285.0
22 TraesCS4A01G441900 chr3A 76.170 470 92 15 1862 2321 607067058 607067517 2.090000e-56 230.0
23 TraesCS4A01G441900 chr3A 100.000 93 0 0 494 586 477416653 477416561 3.580000e-39 172.0
24 TraesCS4A01G441900 chr3A 97.872 94 2 0 489 582 750297233 750297140 2.150000e-36 163.0
25 TraesCS4A01G441900 chr3A 92.593 108 4 4 488 593 697782319 697782214 4.660000e-33 152.0
26 TraesCS4A01G441900 chr3A 81.053 190 31 3 1118 1303 63476991 63476803 2.170000e-31 147.0
27 TraesCS4A01G441900 chr3A 79.058 191 29 9 235 418 714521483 714521669 1.310000e-23 121.0
28 TraesCS4A01G441900 chr3A 82.716 81 11 2 2625 2702 639187480 639187560 4.830000e-08 69.4
29 TraesCS4A01G441900 chr1D 78.205 468 82 6 1858 2307 9868124 9867659 5.700000e-72 281.0
30 TraesCS4A01G441900 chr3B 77.944 467 79 12 1861 2309 650808937 650808477 1.230000e-68 270.0
31 TraesCS4A01G441900 chr3B 75.359 418 78 21 1 400 143073980 143073570 7.690000e-41 178.0
32 TraesCS4A01G441900 chr3B 81.098 164 28 1 1143 1303 79956107 79955944 7.850000e-26 128.0
33 TraesCS4A01G441900 chr3B 94.737 76 4 0 2624 2699 59219201 59219276 4.730000e-23 119.0
34 TraesCS4A01G441900 chr3B 87.500 64 5 2 249 310 773528999 773529061 1.340000e-08 71.3
35 TraesCS4A01G441900 chr2A 77.572 486 83 16 1858 2321 684440610 684440129 1.230000e-68 270.0
36 TraesCS4A01G441900 chr2A 100.000 90 0 0 496 585 41474250 41474161 1.660000e-37 167.0
37 TraesCS4A01G441900 chr2A 77.419 186 23 9 2139 2307 1328359 1328542 2.860000e-15 93.5
38 TraesCS4A01G441900 chr2B 79.552 357 68 3 1870 2223 775549251 775548897 1.610000e-62 250.0
39 TraesCS4A01G441900 chr2B 98.913 92 1 0 498 589 744873175 744873084 5.980000e-37 165.0
40 TraesCS4A01G441900 chr5D 78.507 335 54 5 1992 2308 42067613 42067947 1.270000e-48 204.0
41 TraesCS4A01G441900 chr5B 78.443 334 54 4 1992 2307 36612242 36611909 4.560000e-48 202.0
42 TraesCS4A01G441900 chr5B 89.130 92 10 0 1144 1235 685219158 685219067 6.110000e-22 115.0
43 TraesCS4A01G441900 chr7B 77.401 354 68 7 78 422 709449551 709449901 1.640000e-47 200.0
44 TraesCS4A01G441900 chr7B 100.000 90 0 0 495 584 634299283 634299372 1.660000e-37 167.0
45 TraesCS4A01G441900 chr6B 95.000 100 5 0 494 593 65452590 65452491 1.000000e-34 158.0
46 TraesCS4A01G441900 chr6B 96.154 78 3 0 2625 2702 511708440 511708517 7.850000e-26 128.0
47 TraesCS4A01G441900 chr1B 97.778 90 1 1 495 583 22881877 22881966 1.300000e-33 154.0
48 TraesCS4A01G441900 chr1B 82.278 158 24 3 4 160 645720636 645720482 1.690000e-27 134.0
49 TraesCS4A01G441900 chr1B 79.381 97 18 2 227 321 149257977 149257881 1.740000e-07 67.6
50 TraesCS4A01G441900 chr3D 80.526 190 32 4 1118 1303 50401159 50400971 1.010000e-29 141.0
51 TraesCS4A01G441900 chr3D 80.451 133 20 5 1 131 313075947 313075819 2.210000e-16 97.1
52 TraesCS4A01G441900 chr4D 81.761 159 26 2 1145 1300 10744017 10744175 2.180000e-26 130.0
53 TraesCS4A01G441900 chr4D 94.872 78 4 0 2625 2702 502030572 502030495 3.650000e-24 122.0
54 TraesCS4A01G441900 chr4D 93.243 74 5 0 2626 2699 380558434 380558507 2.840000e-20 110.0
55 TraesCS4A01G441900 chrUn 94.872 78 4 0 2625 2702 100223398 100223321 3.650000e-24 122.0
56 TraesCS4A01G441900 chr6A 83.077 130 17 4 1 128 495675402 495675528 2.200000e-21 113.0
57 TraesCS4A01G441900 chr4B 93.506 77 4 1 3 78 67057099 67057175 2.200000e-21 113.0
58 TraesCS4A01G441900 chr7D 85.185 108 10 5 3 105 510849334 510849440 3.680000e-19 106.0
59 TraesCS4A01G441900 chr7D 90.667 75 6 1 2625 2698 509502226 509502152 6.160000e-17 99.0
60 TraesCS4A01G441900 chr1A 90.789 76 7 0 2625 2700 12413232 12413157 4.760000e-18 102.0
61 TraesCS4A01G441900 chr2D 96.970 33 1 0 263 295 126717017 126716985 3.760000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G441900 chr4A 710173245 710175946 2701 True 1069.76 4990 97.5000 1 2702 5 chr4A.!!$R3 2701
1 TraesCS4A01G441900 chr7A 26663696 26666094 2398 True 771.20 2113 89.6845 1 2548 4 chr7A.!!$R3 2547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 765 0.026674 TTGATCGTCGGCGTACGTAG 59.973 55.0 23.52 11.23 43.31 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 1793 0.388649 CCGACACGGGAAGAAGACTG 60.389 60.0 0.0 0.0 44.15 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.670087 CGCTGAAGCATATACCTCCGG 60.670 57.143 0.00 0.00 42.21 5.14
70 71 0.608640 CATATACCTCCGGGGCTCAC 59.391 60.000 0.00 0.00 39.10 3.51
92 93 0.460987 CTGTCGGCCATGAGGAAGAC 60.461 60.000 2.24 0.00 40.78 3.01
102 103 3.452474 CATGAGGAAGACAACGGAGATC 58.548 50.000 0.00 0.00 0.00 2.75
129 130 0.100861 GCCGGCTGTGTAGACTAGTC 59.899 60.000 22.15 15.41 0.00 2.59
153 154 3.004839 AGAGTATCCATGTCGTCGGAATG 59.995 47.826 0.00 0.00 34.22 2.67
161 162 4.306600 CATGTCGTCGGAATGAATATCCA 58.693 43.478 0.00 0.00 36.74 3.41
185 186 2.098831 GCCGGCCGTTGACTAGTTC 61.099 63.158 26.12 0.00 0.00 3.01
186 187 1.590147 CCGGCCGTTGACTAGTTCT 59.410 57.895 26.12 0.00 0.00 3.01
265 274 5.355910 TCTTCTGGTTTGTATAAAATCCGCC 59.644 40.000 0.00 0.00 0.00 6.13
273 282 2.271821 ATAAAATCCGCCGTGTTTGC 57.728 45.000 0.00 0.00 0.00 3.68
288 297 2.160615 TGTTTGCATGTATTTCGTCCGG 59.839 45.455 0.00 0.00 0.00 5.14
295 304 4.260091 GCATGTATTTCGTCCGGTTAGTTC 60.260 45.833 0.00 0.00 0.00 3.01
302 313 1.796459 CGTCCGGTTAGTTCAAAGTGG 59.204 52.381 0.00 0.00 0.00 4.00
327 338 4.700268 AAATGTATGCGAGCAATGTTGA 57.300 36.364 0.57 0.00 0.00 3.18
331 342 3.688673 TGTATGCGAGCAATGTTGAATGA 59.311 39.130 0.57 0.00 0.00 2.57
332 343 4.336153 TGTATGCGAGCAATGTTGAATGAT 59.664 37.500 0.57 0.00 0.00 2.45
333 344 3.139603 TGCGAGCAATGTTGAATGATG 57.860 42.857 0.00 0.00 0.00 3.07
334 345 2.159352 TGCGAGCAATGTTGAATGATGG 60.159 45.455 0.00 0.00 0.00 3.51
335 346 2.456989 CGAGCAATGTTGAATGATGGC 58.543 47.619 0.00 0.00 0.00 4.40
336 347 2.797087 CGAGCAATGTTGAATGATGGCC 60.797 50.000 0.00 0.00 0.00 5.36
337 348 2.429610 GAGCAATGTTGAATGATGGCCT 59.570 45.455 3.32 0.00 0.00 5.19
338 349 2.835764 AGCAATGTTGAATGATGGCCTT 59.164 40.909 3.32 0.00 0.00 4.35
339 350 3.118884 AGCAATGTTGAATGATGGCCTTC 60.119 43.478 11.69 11.69 0.00 3.46
340 351 3.441163 CAATGTTGAATGATGGCCTTCG 58.559 45.455 13.54 0.00 0.00 3.79
341 352 1.462616 TGTTGAATGATGGCCTTCGG 58.537 50.000 13.54 0.00 0.00 4.30
365 376 4.143333 CGTCCGCGGATTGGTCCT 62.143 66.667 33.58 0.00 42.73 3.85
367 378 2.363795 TCCGCGGATTGGTCCTCT 60.364 61.111 27.28 0.00 42.73 3.69
372 383 1.141881 CGGATTGGTCCTCTGTCCG 59.858 63.158 9.34 9.34 44.72 4.79
391 402 0.248289 GGGGACGGATTCGACAGAAA 59.752 55.000 0.00 0.00 40.15 2.52
396 407 4.403453 GGACGGATTCGACAGAAAATTTG 58.597 43.478 0.00 0.00 40.15 2.32
402 413 1.950909 TCGACAGAAAATTTGCGGGTT 59.049 42.857 1.16 0.00 0.00 4.11
405 416 3.049912 GACAGAAAATTTGCGGGTTGAC 58.950 45.455 1.16 0.00 0.00 3.18
407 418 1.679153 AGAAAATTTGCGGGTTGACGT 59.321 42.857 0.00 0.00 35.98 4.34
408 419 2.100087 AGAAAATTTGCGGGTTGACGTT 59.900 40.909 0.00 0.00 35.98 3.99
409 420 1.846541 AAATTTGCGGGTTGACGTTG 58.153 45.000 0.00 0.00 35.98 4.10
410 421 0.031449 AATTTGCGGGTTGACGTTGG 59.969 50.000 0.00 0.00 35.98 3.77
411 422 0.820074 ATTTGCGGGTTGACGTTGGA 60.820 50.000 0.00 0.00 35.98 3.53
412 423 1.440938 TTTGCGGGTTGACGTTGGAG 61.441 55.000 0.00 0.00 35.98 3.86
413 424 2.029964 GCGGGTTGACGTTGGAGA 59.970 61.111 0.00 0.00 35.98 3.71
414 425 1.375523 GCGGGTTGACGTTGGAGAT 60.376 57.895 0.00 0.00 35.98 2.75
415 426 1.635663 GCGGGTTGACGTTGGAGATG 61.636 60.000 0.00 0.00 35.98 2.90
416 427 1.635663 CGGGTTGACGTTGGAGATGC 61.636 60.000 0.00 0.00 0.00 3.91
417 428 1.305930 GGGTTGACGTTGGAGATGCC 61.306 60.000 0.00 0.00 37.10 4.40
418 429 1.635663 GGTTGACGTTGGAGATGCCG 61.636 60.000 0.00 0.00 40.66 5.69
419 430 0.949105 GTTGACGTTGGAGATGCCGT 60.949 55.000 0.00 0.00 40.66 5.68
420 431 0.604073 TTGACGTTGGAGATGCCGTA 59.396 50.000 0.00 0.00 40.66 4.02
438 449 6.033341 TGCCGTAATGCATAAAATCTTGTTC 58.967 36.000 0.00 0.00 36.04 3.18
443 454 2.165437 TGCATAAAATCTTGTTCCCGCC 59.835 45.455 0.00 0.00 0.00 6.13
463 474 3.289062 TCCGCGGACACGTCTGAA 61.289 61.111 27.28 0.00 43.45 3.02
488 499 2.045926 ACCAAGATCCCTGCGTGC 60.046 61.111 0.00 0.00 0.00 5.34
491 502 2.434884 AAGATCCCTGCGTGCGTG 60.435 61.111 0.00 0.00 0.00 5.34
492 503 3.240134 AAGATCCCTGCGTGCGTGT 62.240 57.895 0.00 0.00 0.00 4.49
493 504 3.490759 GATCCCTGCGTGCGTGTG 61.491 66.667 0.00 0.00 0.00 3.82
494 505 4.314440 ATCCCTGCGTGCGTGTGT 62.314 61.111 0.00 0.00 0.00 3.72
495 506 2.829043 GATCCCTGCGTGCGTGTGTA 62.829 60.000 0.00 0.00 0.00 2.90
496 507 2.835701 ATCCCTGCGTGCGTGTGTAG 62.836 60.000 0.00 0.00 0.00 2.74
498 509 1.081041 CCTGCGTGCGTGTGTAGTA 60.081 57.895 0.00 0.00 0.00 1.82
499 510 1.342082 CCTGCGTGCGTGTGTAGTAC 61.342 60.000 0.00 0.00 0.00 2.73
500 511 0.386858 CTGCGTGCGTGTGTAGTACT 60.387 55.000 0.00 0.00 0.00 2.73
501 512 0.386352 TGCGTGCGTGTGTAGTACTC 60.386 55.000 0.00 0.00 0.00 2.59
502 513 1.069378 GCGTGCGTGTGTAGTACTCC 61.069 60.000 0.00 0.00 0.00 3.85
503 514 0.455633 CGTGCGTGTGTAGTACTCCC 60.456 60.000 0.00 0.00 0.00 4.30
504 515 0.886563 GTGCGTGTGTAGTACTCCCT 59.113 55.000 0.00 0.00 0.00 4.20
505 516 1.135460 GTGCGTGTGTAGTACTCCCTC 60.135 57.143 0.00 0.00 0.00 4.30
506 517 0.455005 GCGTGTGTAGTACTCCCTCC 59.545 60.000 0.00 0.00 0.00 4.30
507 518 0.731417 CGTGTGTAGTACTCCCTCCG 59.269 60.000 0.00 0.00 0.00 4.63
508 519 1.831580 GTGTGTAGTACTCCCTCCGT 58.168 55.000 0.00 0.00 0.00 4.69
509 520 2.677902 CGTGTGTAGTACTCCCTCCGTA 60.678 54.545 0.00 0.00 0.00 4.02
510 521 3.347216 GTGTGTAGTACTCCCTCCGTAA 58.653 50.000 0.00 0.00 0.00 3.18
511 522 3.758554 GTGTGTAGTACTCCCTCCGTAAA 59.241 47.826 0.00 0.00 0.00 2.01
512 523 3.758554 TGTGTAGTACTCCCTCCGTAAAC 59.241 47.826 0.00 0.00 0.00 2.01
513 524 4.013050 GTGTAGTACTCCCTCCGTAAACT 58.987 47.826 0.00 0.00 0.00 2.66
514 525 5.186198 GTGTAGTACTCCCTCCGTAAACTA 58.814 45.833 0.00 0.00 0.00 2.24
515 526 5.648092 GTGTAGTACTCCCTCCGTAAACTAA 59.352 44.000 0.00 0.00 0.00 2.24
516 527 6.319911 GTGTAGTACTCCCTCCGTAAACTAAT 59.680 42.308 0.00 0.00 0.00 1.73
517 528 7.499232 GTGTAGTACTCCCTCCGTAAACTAATA 59.501 40.741 0.00 0.00 0.00 0.98
518 529 8.220559 TGTAGTACTCCCTCCGTAAACTAATAT 58.779 37.037 0.00 0.00 0.00 1.28
519 530 9.726438 GTAGTACTCCCTCCGTAAACTAATATA 57.274 37.037 0.00 0.00 0.00 0.86
521 532 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
522 533 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
523 534 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
524 535 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
525 536 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
526 537 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
527 538 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
528 539 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
576 587 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
577 588 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
578 589 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
579 590 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
580 591 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
620 631 1.068588 TCTTTGTCTCGTCCACCACAG 59.931 52.381 0.00 0.00 0.00 3.66
627 638 3.044305 GTCCACCACAGCACTCGC 61.044 66.667 0.00 0.00 38.99 5.03
647 658 1.337823 CGTGGGTTGGTCTAGTCCTTG 60.338 57.143 7.56 0.00 0.00 3.61
681 693 1.088306 GGTTGGACGTTGTTGTGACA 58.912 50.000 0.00 0.00 0.00 3.58
687 699 2.097104 GGACGTTGTTGTGACATACGTG 60.097 50.000 20.24 0.54 44.94 4.49
737 749 1.083806 CATGCGAGCTTAGCGGTTGA 61.084 55.000 9.97 0.00 37.44 3.18
751 763 1.512734 GTTGATCGTCGGCGTACGT 60.513 57.895 23.52 14.93 43.31 3.57
752 764 0.247655 GTTGATCGTCGGCGTACGTA 60.248 55.000 23.52 14.73 43.31 3.57
753 765 0.026674 TTGATCGTCGGCGTACGTAG 59.973 55.000 23.52 11.23 43.31 3.51
754 766 1.720448 GATCGTCGGCGTACGTAGC 60.720 63.158 23.52 13.81 43.31 3.58
760 772 3.814268 GGCGTACGTAGCCGTCCA 61.814 66.667 17.90 0.00 46.28 4.02
761 773 2.410469 GCGTACGTAGCCGTCCAT 59.590 61.111 17.90 0.00 46.28 3.41
762 774 1.942712 GCGTACGTAGCCGTCCATG 60.943 63.158 17.90 0.00 46.28 3.66
763 775 1.942712 CGTACGTAGCCGTCCATGC 60.943 63.158 7.22 0.00 46.28 4.06
764 776 1.942712 GTACGTAGCCGTCCATGCG 60.943 63.158 0.00 0.00 46.28 4.73
765 777 2.114051 TACGTAGCCGTCCATGCGA 61.114 57.895 0.00 0.00 46.28 5.10
766 778 2.055310 TACGTAGCCGTCCATGCGAG 62.055 60.000 0.00 0.00 46.28 5.03
767 779 2.962253 GTAGCCGTCCATGCGAGC 60.962 66.667 0.00 0.00 0.00 5.03
768 780 4.569023 TAGCCGTCCATGCGAGCG 62.569 66.667 0.00 0.00 34.77 5.03
770 782 4.865761 GCCGTCCATGCGAGCGTA 62.866 66.667 0.00 0.00 0.00 4.42
771 783 2.655364 CCGTCCATGCGAGCGTAG 60.655 66.667 0.00 0.00 0.00 3.51
784 796 2.872925 CGTAGCGGTTGGTCGTCG 60.873 66.667 0.00 0.00 0.00 5.12
785 797 2.505557 GTAGCGGTTGGTCGTCGG 60.506 66.667 0.00 0.00 0.00 4.79
786 798 4.424566 TAGCGGTTGGTCGTCGGC 62.425 66.667 0.00 0.00 0.00 5.54
789 801 4.403137 CGGTTGGTCGTCGGCGTA 62.403 66.667 10.18 0.00 39.49 4.42
790 802 2.806621 GGTTGGTCGTCGGCGTAC 60.807 66.667 10.18 6.37 39.49 3.67
791 803 3.167945 GTTGGTCGTCGGCGTACG 61.168 66.667 20.36 20.36 44.19 3.67
805 817 1.942712 GTACGTAGCCGTCCATGCG 60.943 63.158 0.00 0.00 46.28 4.73
871 904 0.534203 TGGTGGAGAAGCAAACGACC 60.534 55.000 0.00 0.00 32.00 4.79
974 1007 0.173708 GCACGAAGCTAGCCAGTACT 59.826 55.000 12.13 0.00 41.15 2.73
975 1008 1.799548 GCACGAAGCTAGCCAGTACTC 60.800 57.143 12.13 0.00 41.15 2.59
976 1009 1.104630 ACGAAGCTAGCCAGTACTCC 58.895 55.000 12.13 0.00 0.00 3.85
977 1010 1.341187 ACGAAGCTAGCCAGTACTCCT 60.341 52.381 12.13 0.00 0.00 3.69
978 1011 2.092538 ACGAAGCTAGCCAGTACTCCTA 60.093 50.000 12.13 0.00 0.00 2.94
979 1012 2.291190 CGAAGCTAGCCAGTACTCCTAC 59.709 54.545 12.13 0.00 0.00 3.18
980 1013 3.558033 GAAGCTAGCCAGTACTCCTACT 58.442 50.000 12.13 0.00 33.01 2.57
981 1014 3.673543 AGCTAGCCAGTACTCCTACTT 57.326 47.619 12.13 0.00 30.03 2.24
982 1015 3.292460 AGCTAGCCAGTACTCCTACTTG 58.708 50.000 12.13 0.00 30.03 3.16
983 1016 3.025262 GCTAGCCAGTACTCCTACTTGT 58.975 50.000 2.29 0.00 30.03 3.16
984 1017 4.079901 AGCTAGCCAGTACTCCTACTTGTA 60.080 45.833 12.13 0.00 30.03 2.41
1019 1052 1.920734 ATGCCCGGTAGTGCATTCCA 61.921 55.000 9.79 0.00 45.52 3.53
1025 1058 0.322456 GGTAGTGCATTCCAGTGCCA 60.322 55.000 0.00 0.00 45.81 4.92
1032 1065 1.672356 ATTCCAGTGCCAGTGCGAC 60.672 57.895 0.00 0.00 41.78 5.19
1062 1095 0.633921 TCTCTGGAGGAAGGAGGAGG 59.366 60.000 0.00 0.00 0.00 4.30
1066 1099 2.131067 GGAGGAAGGAGGAGGAGCG 61.131 68.421 0.00 0.00 0.00 5.03
1067 1100 1.076632 GAGGAAGGAGGAGGAGCGA 60.077 63.158 0.00 0.00 0.00 4.93
1068 1101 1.380650 AGGAAGGAGGAGGAGCGAC 60.381 63.158 0.00 0.00 0.00 5.19
1069 1102 1.682684 GGAAGGAGGAGGAGCGACA 60.683 63.158 0.00 0.00 0.00 4.35
1070 1103 1.513622 GAAGGAGGAGGAGCGACAC 59.486 63.158 0.00 0.00 0.00 3.67
1071 1104 1.950973 GAAGGAGGAGGAGCGACACC 61.951 65.000 0.00 0.00 0.00 4.16
1072 1105 3.462678 GGAGGAGGAGCGACACCC 61.463 72.222 0.00 0.00 0.00 4.61
1073 1106 3.462678 GAGGAGGAGCGACACCCC 61.463 72.222 0.00 0.00 0.00 4.95
1074 1107 3.966930 GAGGAGGAGCGACACCCCT 62.967 68.421 0.00 0.00 33.20 4.79
1075 1108 3.775654 GGAGGAGCGACACCCCTG 61.776 72.222 0.00 0.00 0.00 4.45
1076 1109 3.775654 GAGGAGCGACACCCCTGG 61.776 72.222 0.00 0.00 0.00 4.45
1077 1110 4.316823 AGGAGCGACACCCCTGGA 62.317 66.667 0.00 0.00 0.00 3.86
1078 1111 3.775654 GGAGCGACACCCCTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
1079 1112 3.775654 GAGCGACACCCCTGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
1080 1113 4.316823 AGCGACACCCCTGGAGGA 62.317 66.667 8.04 0.00 38.24 3.71
1081 1114 3.775654 GCGACACCCCTGGAGGAG 61.776 72.222 8.04 3.23 38.24 3.69
1082 1115 3.077556 CGACACCCCTGGAGGAGG 61.078 72.222 8.04 0.00 42.38 4.30
1083 1116 2.450243 GACACCCCTGGAGGAGGA 59.550 66.667 8.04 0.00 46.33 3.71
1084 1117 1.229529 GACACCCCTGGAGGAGGAA 60.230 63.158 8.04 0.00 46.33 3.36
1085 1118 1.229658 ACACCCCTGGAGGAGGAAG 60.230 63.158 8.04 3.04 46.33 3.46
1086 1119 1.997874 CACCCCTGGAGGAGGAAGG 60.998 68.421 8.04 0.00 46.33 3.46
1087 1120 2.184631 ACCCCTGGAGGAGGAAGGA 61.185 63.158 8.04 0.00 46.33 3.36
1088 1121 1.383803 CCCCTGGAGGAGGAAGGAG 60.384 68.421 0.00 0.00 46.33 3.69
1089 1122 1.706575 CCCTGGAGGAGGAAGGAGA 59.293 63.158 0.00 0.00 46.33 3.71
1090 1123 0.043334 CCCTGGAGGAGGAAGGAGAA 59.957 60.000 0.00 0.00 46.33 2.87
1091 1124 1.494960 CCTGGAGGAGGAAGGAGAAG 58.505 60.000 0.00 0.00 46.33 2.85
1092 1125 0.829990 CTGGAGGAGGAAGGAGAAGC 59.170 60.000 0.00 0.00 0.00 3.86
1097 1130 3.393149 GAGGAAGGAGAAGCCGCCC 62.393 68.421 0.00 0.00 43.43 6.13
1204 1241 2.042843 TCTTCTCCCTCCTCGCCC 60.043 66.667 0.00 0.00 0.00 6.13
1308 1345 1.359117 CGGCACCTACATCGTCGAT 59.641 57.895 0.75 0.75 0.00 3.59
1312 1349 2.120232 GCACCTACATCGTCGATGAAG 58.880 52.381 35.44 24.94 42.09 3.02
1425 1462 2.126189 GGCGTCGTGACCTACACC 60.126 66.667 0.00 0.00 45.73 4.16
1467 1504 1.070445 CCCCATGTCTCGCATCTCC 59.930 63.158 0.00 0.00 35.19 3.71
1494 1531 1.226101 CATGATCAACGCACACCGC 60.226 57.895 0.00 0.00 41.76 5.68
1556 1593 1.448893 GCCGCACCGAGGTATGAAA 60.449 57.895 0.00 0.00 0.00 2.69
1561 1598 2.159282 CGCACCGAGGTATGAAACTAGT 60.159 50.000 0.00 0.00 0.00 2.57
1613 1652 6.862209 TCGGTTGAATTAATTTTGATGGAGG 58.138 36.000 1.43 0.00 0.00 4.30
1614 1653 6.661377 TCGGTTGAATTAATTTTGATGGAGGA 59.339 34.615 1.43 0.00 0.00 3.71
1644 1683 6.682746 TGTTTGTCAGAGTCTGAAGATACTC 58.317 40.000 24.26 10.65 42.46 2.59
1664 1703 4.314440 GGCGTCACTGCAGTCCCA 62.314 66.667 18.64 0.21 36.28 4.37
1698 1737 0.041386 ACGTCTTCCTTAGGAGGCCT 59.959 55.000 3.86 3.86 43.21 5.19
1717 1756 2.484264 CCTTAAACCGCAACCTCAAGAG 59.516 50.000 0.00 0.00 0.00 2.85
1754 1793 0.984230 TGATCCCCACCAGAGTTCAC 59.016 55.000 0.00 0.00 0.00 3.18
1758 1797 0.035458 CCCCACCAGAGTTCACAGTC 59.965 60.000 0.00 0.00 0.00 3.51
1858 1898 8.358148 TCGTGAAGAACATTAAGTAAAGAGTCT 58.642 33.333 0.00 0.00 0.00 3.24
1880 1920 3.588396 TGGTTAGTGGTTTAGGTTAGGGG 59.412 47.826 0.00 0.00 0.00 4.79
1883 1923 5.458069 GGTTAGTGGTTTAGGTTAGGGGTTT 60.458 44.000 0.00 0.00 0.00 3.27
1922 1962 1.907739 CACTCGGATGGATGGTGGT 59.092 57.895 0.00 0.00 0.00 4.16
1924 1964 1.524621 CTCGGATGGATGGTGGTGC 60.525 63.158 0.00 0.00 0.00 5.01
1949 1989 1.476891 TCTTCGAGATTGTCTTCCGGG 59.523 52.381 0.00 0.00 0.00 5.73
1954 1994 0.984230 AGATTGTCTTCCGGGCTTCA 59.016 50.000 0.00 0.00 0.00 3.02
1963 2003 0.914417 TCCGGGCTTCAATCCTCCTT 60.914 55.000 0.00 0.00 0.00 3.36
1966 2006 1.745141 CGGGCTTCAATCCTCCTTGAG 60.745 57.143 0.00 0.00 36.55 3.02
1976 2016 3.553828 TCCTCCTTGAGTTTGTTCGTT 57.446 42.857 0.00 0.00 0.00 3.85
1982 2022 3.127895 CCTTGAGTTTGTTCGTTTGGACA 59.872 43.478 0.00 0.00 0.00 4.02
1988 2028 5.685841 AGTTTGTTCGTTTGGACATAATCG 58.314 37.500 0.00 0.00 0.00 3.34
1989 2029 4.671880 TTGTTCGTTTGGACATAATCGG 57.328 40.909 0.00 0.00 0.00 4.18
2012 2052 2.584236 GAGCTCCGGTGTAGATTCCTA 58.416 52.381 0.87 0.00 0.00 2.94
2036 2076 1.889530 CTCCTTGGGACGGTGAGGTC 61.890 65.000 0.00 0.00 36.18 3.85
2071 2111 1.621317 TGTGGCGAGATTTGGTGTCTA 59.379 47.619 0.00 0.00 0.00 2.59
2075 2115 2.271800 GCGAGATTTGGTGTCTAGTGG 58.728 52.381 0.00 0.00 0.00 4.00
2088 2128 4.865365 GTGTCTAGTGGTTCAGTTCTATGC 59.135 45.833 0.00 0.00 0.00 3.14
2096 2136 3.440522 GGTTCAGTTCTATGCAAGGGTTC 59.559 47.826 0.00 0.00 0.00 3.62
2111 2151 2.025418 GTTCAATGGCGACGACGGT 61.025 57.895 9.67 0.00 40.15 4.83
2119 2159 4.778415 CGACGACGGTGCCTCCAG 62.778 72.222 0.00 0.00 35.57 3.86
2121 2161 4.988716 ACGACGGTGCCTCCAGGA 62.989 66.667 0.00 0.00 37.39 3.86
2134 2177 1.001248 CCAGGACGGTCCTTAGGGA 59.999 63.158 26.78 0.00 46.91 4.20
2147 2190 2.002586 CTTAGGGACACGTGCATGAAG 58.997 52.381 17.22 9.25 0.00 3.02
2165 2208 6.600350 CATGAAGATTTTCCAGCTATCATCG 58.400 40.000 0.00 0.00 32.09 3.84
2175 2218 3.190327 CCAGCTATCATCGACTAGGTCAG 59.810 52.174 0.00 0.00 32.09 3.51
2176 2219 3.190327 CAGCTATCATCGACTAGGTCAGG 59.810 52.174 0.00 0.00 32.09 3.86
2183 2226 2.760385 ACTAGGTCAGGCCGGCTC 60.760 66.667 28.56 16.85 43.70 4.70
2201 2244 2.181021 CGGTAGTCCAGCGGTGAC 59.819 66.667 17.83 12.21 44.36 3.67
2202 2245 2.632544 CGGTAGTCCAGCGGTGACA 61.633 63.158 17.83 0.00 44.36 3.58
2205 2248 0.525668 GTAGTCCAGCGGTGACATCG 60.526 60.000 17.83 3.04 35.15 3.84
2207 2250 2.994995 TCCAGCGGTGACATCGGT 60.995 61.111 17.83 7.06 38.98 4.69
2209 2252 2.048222 CAGCGGTGACATCGGTGT 60.048 61.111 27.63 0.00 46.72 4.16
2211 2254 2.357034 GCGGTGACATCGGTGTGT 60.357 61.111 5.76 0.00 39.09 3.72
2216 2259 3.179265 GACATCGGTGTGTCGGCG 61.179 66.667 5.76 0.00 39.12 6.46
2217 2260 4.735132 ACATCGGTGTGTCGGCGG 62.735 66.667 7.21 0.00 37.14 6.13
2223 2266 4.409218 GTGTGTCGGCGGCTCGTA 62.409 66.667 14.51 0.00 0.00 3.43
2224 2267 4.409218 TGTGTCGGCGGCTCGTAC 62.409 66.667 14.51 2.33 0.00 3.67
2225 2268 4.112341 GTGTCGGCGGCTCGTACT 62.112 66.667 14.51 0.00 0.00 2.73
2226 2269 3.807538 TGTCGGCGGCTCGTACTC 61.808 66.667 14.51 0.00 0.00 2.59
2227 2270 4.883300 GTCGGCGGCTCGTACTCG 62.883 72.222 3.23 0.00 38.55 4.18
2229 2272 4.471726 CGGCGGCTCGTACTCGTT 62.472 66.667 7.61 0.00 38.33 3.85
2230 2273 2.126189 GGCGGCTCGTACTCGTTT 60.126 61.111 0.00 0.00 38.33 3.60
2353 2402 5.144692 TCATCTGGTATCTATTCAGCTGC 57.855 43.478 9.47 0.00 0.00 5.25
2396 2445 0.034896 ACTGGTCCCATCGTGTTCAC 59.965 55.000 0.00 0.00 0.00 3.18
2405 2454 2.494059 CATCGTGTTCACTTGGTCCTT 58.506 47.619 1.53 0.00 0.00 3.36
2409 2458 2.878406 CGTGTTCACTTGGTCCTTGAAT 59.122 45.455 1.53 0.00 32.10 2.57
2415 2464 4.136796 TCACTTGGTCCTTGAATCAACTG 58.863 43.478 0.00 0.00 0.00 3.16
2418 2467 3.855255 TGGTCCTTGAATCAACTGTGA 57.145 42.857 0.00 0.00 38.41 3.58
2464 2513 2.364970 TGCAATCTTGGTTGGACTTTGG 59.635 45.455 0.00 0.00 0.00 3.28
2468 2517 0.310854 CTTGGTTGGACTTTGGCGTC 59.689 55.000 0.00 0.00 0.00 5.19
2534 2584 7.762615 TCACACCTATACAGAAAATTTCCTACG 59.237 37.037 1.57 0.00 0.00 3.51
2548 2598 1.854939 TCCTACGGGTAATCTCCTCCA 59.145 52.381 0.00 0.00 0.00 3.86
2549 2599 2.449730 TCCTACGGGTAATCTCCTCCAT 59.550 50.000 0.00 0.00 0.00 3.41
2550 2600 2.563179 CCTACGGGTAATCTCCTCCATG 59.437 54.545 0.00 0.00 0.00 3.66
2551 2601 2.471815 ACGGGTAATCTCCTCCATGA 57.528 50.000 0.00 0.00 0.00 3.07
2552 2602 2.759355 ACGGGTAATCTCCTCCATGAA 58.241 47.619 0.00 0.00 0.00 2.57
2553 2603 3.318313 ACGGGTAATCTCCTCCATGAAT 58.682 45.455 0.00 0.00 0.00 2.57
2554 2604 3.716872 ACGGGTAATCTCCTCCATGAATT 59.283 43.478 0.00 0.00 0.00 2.17
2555 2605 4.166144 ACGGGTAATCTCCTCCATGAATTT 59.834 41.667 0.00 0.00 0.00 1.82
2556 2606 5.368523 ACGGGTAATCTCCTCCATGAATTTA 59.631 40.000 0.00 0.00 0.00 1.40
2557 2607 6.126594 ACGGGTAATCTCCTCCATGAATTTAA 60.127 38.462 0.00 0.00 0.00 1.52
2558 2608 6.770785 CGGGTAATCTCCTCCATGAATTTAAA 59.229 38.462 0.00 0.00 0.00 1.52
2559 2609 7.041098 CGGGTAATCTCCTCCATGAATTTAAAG 60.041 40.741 0.00 0.00 0.00 1.85
2560 2610 7.780271 GGGTAATCTCCTCCATGAATTTAAAGT 59.220 37.037 0.00 0.00 0.00 2.66
2561 2611 9.847224 GGTAATCTCCTCCATGAATTTAAAGTA 57.153 33.333 0.00 0.00 0.00 2.24
2564 2614 8.753497 ATCTCCTCCATGAATTTAAAGTAACC 57.247 34.615 0.00 0.00 0.00 2.85
2565 2615 7.116736 TCTCCTCCATGAATTTAAAGTAACCC 58.883 38.462 0.00 0.00 0.00 4.11
2566 2616 6.192044 TCCTCCATGAATTTAAAGTAACCCC 58.808 40.000 0.00 0.00 0.00 4.95
2567 2617 6.011096 TCCTCCATGAATTTAAAGTAACCCCT 60.011 38.462 0.00 0.00 0.00 4.79
2568 2618 6.667848 CCTCCATGAATTTAAAGTAACCCCTT 59.332 38.462 0.00 0.00 0.00 3.95
2569 2619 7.180229 CCTCCATGAATTTAAAGTAACCCCTTT 59.820 37.037 0.00 0.00 38.23 3.11
2570 2620 9.250246 CTCCATGAATTTAAAGTAACCCCTTTA 57.750 33.333 0.00 0.00 36.18 1.85
2571 2621 9.777008 TCCATGAATTTAAAGTAACCCCTTTAT 57.223 29.630 0.00 0.00 36.92 1.40
2575 2625 9.603189 TGAATTTAAAGTAACCCCTTTATTCCA 57.397 29.630 0.00 0.00 36.92 3.53
2578 2628 9.610104 ATTTAAAGTAACCCCTTTATTCCAACT 57.390 29.630 0.00 0.00 36.92 3.16
2582 2632 8.589701 AAGTAACCCCTTTATTCCAACTAATG 57.410 34.615 0.00 0.00 0.00 1.90
2600 2650 8.960591 CAACTAATGGACCTTGTGATATTTTCT 58.039 33.333 0.00 0.00 0.00 2.52
2601 2651 9.533831 AACTAATGGACCTTGTGATATTTTCTT 57.466 29.630 0.00 0.00 0.00 2.52
2602 2652 9.178758 ACTAATGGACCTTGTGATATTTTCTTC 57.821 33.333 0.00 0.00 0.00 2.87
2603 2653 9.177608 CTAATGGACCTTGTGATATTTTCTTCA 57.822 33.333 0.00 0.00 0.00 3.02
2604 2654 7.636150 ATGGACCTTGTGATATTTTCTTCAG 57.364 36.000 0.00 0.00 0.00 3.02
2605 2655 6.542821 TGGACCTTGTGATATTTTCTTCAGT 58.457 36.000 0.00 0.00 0.00 3.41
2606 2656 7.685481 TGGACCTTGTGATATTTTCTTCAGTA 58.315 34.615 0.00 0.00 0.00 2.74
2607 2657 8.160765 TGGACCTTGTGATATTTTCTTCAGTAA 58.839 33.333 0.00 0.00 0.00 2.24
2608 2658 9.178758 GGACCTTGTGATATTTTCTTCAGTAAT 57.821 33.333 0.00 0.00 0.00 1.89
2609 2659 9.994432 GACCTTGTGATATTTTCTTCAGTAATG 57.006 33.333 0.00 0.00 0.00 1.90
2610 2660 8.462016 ACCTTGTGATATTTTCTTCAGTAATGC 58.538 33.333 0.00 0.00 0.00 3.56
2611 2661 8.680903 CCTTGTGATATTTTCTTCAGTAATGCT 58.319 33.333 0.00 0.00 0.00 3.79
2614 2664 9.665719 TGTGATATTTTCTTCAGTAATGCTACA 57.334 29.630 0.00 0.00 0.00 2.74
2615 2665 9.922305 GTGATATTTTCTTCAGTAATGCTACAC 57.078 33.333 0.00 0.00 0.00 2.90
2616 2666 9.109393 TGATATTTTCTTCAGTAATGCTACACC 57.891 33.333 0.00 0.00 0.00 4.16
2617 2667 9.331282 GATATTTTCTTCAGTAATGCTACACCT 57.669 33.333 0.00 0.00 0.00 4.00
2620 2670 8.492673 TTTTCTTCAGTAATGCTACACCTATG 57.507 34.615 0.00 0.00 0.00 2.23
2621 2671 6.791867 TCTTCAGTAATGCTACACCTATGT 57.208 37.500 0.00 0.00 43.30 2.29
2622 2672 7.891498 TCTTCAGTAATGCTACACCTATGTA 57.109 36.000 0.00 0.00 40.48 2.29
2623 2673 8.301252 TCTTCAGTAATGCTACACCTATGTAA 57.699 34.615 0.00 0.00 40.84 2.41
2624 2674 8.924303 TCTTCAGTAATGCTACACCTATGTAAT 58.076 33.333 0.00 0.00 40.84 1.89
2625 2675 9.547753 CTTCAGTAATGCTACACCTATGTAATT 57.452 33.333 0.00 0.00 40.84 1.40
2626 2676 9.899661 TTCAGTAATGCTACACCTATGTAATTT 57.100 29.630 0.00 0.00 40.84 1.82
2627 2677 9.899661 TCAGTAATGCTACACCTATGTAATTTT 57.100 29.630 0.00 0.00 40.84 1.82
2647 2697 2.074547 TTTTCGAGAGTACGCCTTGG 57.925 50.000 0.00 0.00 0.00 3.61
2648 2698 0.389426 TTTCGAGAGTACGCCTTGGC 60.389 55.000 0.75 0.75 0.00 4.52
2649 2699 2.537792 TTCGAGAGTACGCCTTGGCG 62.538 60.000 29.32 29.32 39.31 5.69
2651 2701 1.805254 GAGAGTACGCCTTGGCGTA 59.195 57.895 34.06 34.06 44.94 4.42
2667 2717 5.794726 TGGCGTACCATAGCTTTATAGAA 57.205 39.130 0.00 0.00 42.67 2.10
2668 2718 5.779922 TGGCGTACCATAGCTTTATAGAAG 58.220 41.667 0.00 0.00 42.67 2.85
2669 2719 5.169295 GGCGTACCATAGCTTTATAGAAGG 58.831 45.833 0.00 0.00 35.26 3.46
2670 2720 4.626172 GCGTACCATAGCTTTATAGAAGGC 59.374 45.833 0.00 0.00 37.92 4.35
2671 2721 5.779922 CGTACCATAGCTTTATAGAAGGCA 58.220 41.667 6.98 0.00 40.04 4.75
2672 2722 6.220930 CGTACCATAGCTTTATAGAAGGCAA 58.779 40.000 6.98 0.00 40.04 4.52
2673 2723 6.704493 CGTACCATAGCTTTATAGAAGGCAAA 59.296 38.462 6.98 0.00 40.04 3.68
2674 2724 7.225931 CGTACCATAGCTTTATAGAAGGCAAAA 59.774 37.037 6.98 0.00 40.04 2.44
2675 2725 9.067986 GTACCATAGCTTTATAGAAGGCAAAAT 57.932 33.333 6.98 0.00 40.04 1.82
2676 2726 8.539117 ACCATAGCTTTATAGAAGGCAAAATT 57.461 30.769 6.98 0.00 40.04 1.82
2677 2727 9.640952 ACCATAGCTTTATAGAAGGCAAAATTA 57.359 29.630 6.98 0.00 40.04 1.40
2682 2732 9.467796 AGCTTTATAGAAGGCAAAATTAGAGTT 57.532 29.630 6.98 0.00 40.04 3.01
2688 2738 9.959721 ATAGAAGGCAAAATTAGAGTTACAAGA 57.040 29.630 0.00 0.00 0.00 3.02
2689 2739 8.691661 AGAAGGCAAAATTAGAGTTACAAGAA 57.308 30.769 0.00 0.00 0.00 2.52
2690 2740 9.131791 AGAAGGCAAAATTAGAGTTACAAGAAA 57.868 29.630 0.00 0.00 0.00 2.52
2691 2741 9.181805 GAAGGCAAAATTAGAGTTACAAGAAAC 57.818 33.333 0.00 0.00 0.00 2.78
2692 2742 8.465273 AGGCAAAATTAGAGTTACAAGAAACT 57.535 30.769 0.00 0.00 42.36 2.66
2693 2743 9.569122 AGGCAAAATTAGAGTTACAAGAAACTA 57.431 29.630 0.00 0.00 39.78 2.24
2694 2744 9.608617 GGCAAAATTAGAGTTACAAGAAACTAC 57.391 33.333 0.00 0.00 39.78 2.73
2699 2749 8.967552 ATTAGAGTTACAAGAAACTACACTCG 57.032 34.615 0.00 0.00 39.78 4.18
2700 2750 5.221130 AGAGTTACAAGAAACTACACTCGC 58.779 41.667 0.00 0.00 39.78 5.03
2701 2751 5.009811 AGAGTTACAAGAAACTACACTCGCT 59.990 40.000 0.00 0.00 39.78 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 0.036388 TTGTCTTCCTCATGGCCGAC 60.036 55.000 0.00 0.00 34.80 4.79
76 77 0.036388 GTTGTCTTCCTCATGGCCGA 60.036 55.000 0.00 0.00 0.00 5.54
83 84 1.825474 GGATCTCCGTTGTCTTCCTCA 59.175 52.381 0.00 0.00 0.00 3.86
116 117 6.718294 TGGATACTCTTGACTAGTCTACACA 58.282 40.000 23.01 0.51 37.61 3.72
117 118 7.283580 ACATGGATACTCTTGACTAGTCTACAC 59.716 40.741 23.01 7.06 37.61 2.90
118 119 7.347252 ACATGGATACTCTTGACTAGTCTACA 58.653 38.462 23.01 8.76 37.61 2.74
129 130 2.357952 TCCGACGACATGGATACTCTTG 59.642 50.000 0.00 0.00 37.61 3.02
153 154 3.041940 CGGCGCCGGTGGATATTC 61.042 66.667 40.50 0.62 35.56 1.75
180 181 8.958060 AATGATACCAGGCTAAGATAGAACTA 57.042 34.615 0.00 0.00 0.00 2.24
181 182 7.863901 AATGATACCAGGCTAAGATAGAACT 57.136 36.000 0.00 0.00 0.00 3.01
185 186 9.442047 CCTAAAAATGATACCAGGCTAAGATAG 57.558 37.037 0.00 0.00 0.00 2.08
186 187 8.945193 ACCTAAAAATGATACCAGGCTAAGATA 58.055 33.333 0.00 0.00 0.00 1.98
251 260 3.426426 GCAAACACGGCGGATTTTATACA 60.426 43.478 13.24 0.00 0.00 2.29
260 269 0.675208 ATACATGCAAACACGGCGGA 60.675 50.000 13.24 0.00 0.00 5.54
261 270 0.170116 AATACATGCAAACACGGCGG 59.830 50.000 13.24 2.35 0.00 6.13
262 271 1.910819 GAAATACATGCAAACACGGCG 59.089 47.619 4.80 4.80 0.00 6.46
265 274 3.160545 GGACGAAATACATGCAAACACG 58.839 45.455 0.00 0.00 0.00 4.49
273 282 4.865925 TGAACTAACCGGACGAAATACATG 59.134 41.667 9.46 0.00 0.00 3.21
295 304 5.286082 GCTCGCATACATTTTAACCACTTTG 59.714 40.000 0.00 0.00 0.00 2.77
302 313 6.526325 TCAACATTGCTCGCATACATTTTAAC 59.474 34.615 0.00 0.00 0.00 2.01
358 369 2.606519 CCCCGGACAGAGGACCAA 60.607 66.667 0.73 0.00 0.00 3.67
372 383 0.248289 TTTCTGTCGAATCCGTCCCC 59.752 55.000 0.00 0.00 37.05 4.81
379 390 3.171277 CCCGCAAATTTTCTGTCGAATC 58.829 45.455 0.00 0.00 0.00 2.52
384 395 3.049912 GTCAACCCGCAAATTTTCTGTC 58.950 45.455 0.00 0.00 0.00 3.51
385 396 2.542824 CGTCAACCCGCAAATTTTCTGT 60.543 45.455 0.00 0.00 0.00 3.41
386 397 2.050691 CGTCAACCCGCAAATTTTCTG 58.949 47.619 0.00 0.00 0.00 3.02
388 399 2.128367 ACGTCAACCCGCAAATTTTC 57.872 45.000 0.00 0.00 0.00 2.29
391 402 0.031449 CCAACGTCAACCCGCAAATT 59.969 50.000 0.00 0.00 0.00 1.82
396 407 1.375523 ATCTCCAACGTCAACCCGC 60.376 57.895 0.00 0.00 0.00 6.13
402 413 0.604073 TTACGGCATCTCCAACGTCA 59.396 50.000 0.00 0.00 40.38 4.35
405 416 0.304705 GCATTACGGCATCTCCAACG 59.695 55.000 0.00 0.00 34.01 4.10
407 418 3.871701 TGCATTACGGCATCTCCAA 57.128 47.368 0.00 0.00 39.25 3.53
415 426 5.458779 GGAACAAGATTTTATGCATTACGGC 59.541 40.000 3.54 0.00 0.00 5.68
416 427 5.977129 GGGAACAAGATTTTATGCATTACGG 59.023 40.000 3.54 0.00 0.00 4.02
417 428 5.681105 CGGGAACAAGATTTTATGCATTACG 59.319 40.000 3.54 0.00 0.00 3.18
418 429 5.458779 GCGGGAACAAGATTTTATGCATTAC 59.541 40.000 3.54 0.00 0.00 1.89
419 430 5.451242 GGCGGGAACAAGATTTTATGCATTA 60.451 40.000 3.54 0.00 0.00 1.90
420 431 4.432712 GCGGGAACAAGATTTTATGCATT 58.567 39.130 3.54 0.00 0.00 3.56
427 438 1.886542 GACAGGCGGGAACAAGATTTT 59.113 47.619 0.00 0.00 0.00 1.82
463 474 1.194781 AGGGATCTTGGTGCTCGTGT 61.195 55.000 0.00 0.00 0.00 4.49
488 499 0.731417 CGGAGGGAGTACTACACACG 59.269 60.000 7.57 3.82 0.00 4.49
491 502 4.013050 AGTTTACGGAGGGAGTACTACAC 58.987 47.826 7.57 0.02 0.00 2.90
492 503 4.307032 AGTTTACGGAGGGAGTACTACA 57.693 45.455 7.57 0.00 0.00 2.74
493 504 6.951062 ATTAGTTTACGGAGGGAGTACTAC 57.049 41.667 0.00 0.00 0.00 2.73
495 506 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
496 507 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
498 509 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
499 510 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
500 511 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
501 512 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
502 513 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
550 561 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
551 562 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
552 563 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
553 564 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
554 565 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
560 571 9.780186 GCAAATACTCCCTCTGTAAACTAATAT 57.220 33.333 0.00 0.00 0.00 1.28
561 572 8.989131 AGCAAATACTCCCTCTGTAAACTAATA 58.011 33.333 0.00 0.00 0.00 0.98
562 573 7.862675 AGCAAATACTCCCTCTGTAAACTAAT 58.137 34.615 0.00 0.00 0.00 1.73
563 574 7.253905 AGCAAATACTCCCTCTGTAAACTAA 57.746 36.000 0.00 0.00 0.00 2.24
564 575 6.869206 AGCAAATACTCCCTCTGTAAACTA 57.131 37.500 0.00 0.00 0.00 2.24
565 576 5.763876 AGCAAATACTCCCTCTGTAAACT 57.236 39.130 0.00 0.00 0.00 2.66
566 577 5.524281 GCTAGCAAATACTCCCTCTGTAAAC 59.476 44.000 10.63 0.00 0.00 2.01
567 578 5.425539 AGCTAGCAAATACTCCCTCTGTAAA 59.574 40.000 18.83 0.00 0.00 2.01
568 579 4.962995 AGCTAGCAAATACTCCCTCTGTAA 59.037 41.667 18.83 0.00 0.00 2.41
569 580 4.547671 AGCTAGCAAATACTCCCTCTGTA 58.452 43.478 18.83 0.00 0.00 2.74
570 581 3.379452 AGCTAGCAAATACTCCCTCTGT 58.621 45.455 18.83 0.00 0.00 3.41
571 582 5.537300 TTAGCTAGCAAATACTCCCTCTG 57.463 43.478 18.83 0.00 0.00 3.35
572 583 5.454045 GCTTTAGCTAGCAAATACTCCCTCT 60.454 44.000 18.83 0.00 40.89 3.69
573 584 4.752604 GCTTTAGCTAGCAAATACTCCCTC 59.247 45.833 18.83 0.00 40.89 4.30
574 585 4.709250 GCTTTAGCTAGCAAATACTCCCT 58.291 43.478 18.83 0.00 40.89 4.20
598 609 2.104111 TGTGGTGGACGAGACAAAGATT 59.896 45.455 0.00 0.00 0.00 2.40
627 638 0.974383 AAGGACTAGACCAACCCACG 59.026 55.000 13.84 0.00 0.00 4.94
647 658 1.068541 CCAACCTTGTTAGCTTTCGCC 60.069 52.381 0.00 0.00 36.60 5.54
681 693 4.807039 GACCGGCACCGCACGTAT 62.807 66.667 0.00 0.00 38.24 3.06
709 721 2.907897 AAGCTCGCATGGACGGCTAC 62.908 60.000 0.00 0.00 38.19 3.58
710 722 1.388837 TAAGCTCGCATGGACGGCTA 61.389 55.000 0.00 0.00 38.19 3.93
737 749 2.325857 GCTACGTACGCCGACGAT 59.674 61.111 16.72 0.00 45.82 3.73
751 763 4.569023 CGCTCGCATGGACGGCTA 62.569 66.667 0.00 0.00 0.00 3.93
753 765 4.865761 TACGCTCGCATGGACGGC 62.866 66.667 0.00 0.00 0.00 5.68
754 766 2.655364 CTACGCTCGCATGGACGG 60.655 66.667 0.00 0.00 0.00 4.79
755 767 3.323136 GCTACGCTCGCATGGACG 61.323 66.667 0.00 0.00 0.00 4.79
756 768 3.323136 CGCTACGCTCGCATGGAC 61.323 66.667 0.00 0.00 0.00 4.02
757 769 4.569023 CCGCTACGCTCGCATGGA 62.569 66.667 0.00 0.00 0.00 3.41
758 770 4.873129 ACCGCTACGCTCGCATGG 62.873 66.667 0.00 0.00 0.00 3.66
759 771 2.885644 AACCGCTACGCTCGCATG 60.886 61.111 0.00 0.00 0.00 4.06
760 772 2.885644 CAACCGCTACGCTCGCAT 60.886 61.111 0.00 0.00 0.00 4.73
763 775 2.879462 GACCAACCGCTACGCTCG 60.879 66.667 0.00 0.00 0.00 5.03
764 776 2.879462 CGACCAACCGCTACGCTC 60.879 66.667 0.00 0.00 0.00 5.03
765 777 3.621892 GACGACCAACCGCTACGCT 62.622 63.158 0.00 0.00 0.00 5.07
766 778 3.177249 GACGACCAACCGCTACGC 61.177 66.667 0.00 0.00 0.00 4.42
767 779 2.872925 CGACGACCAACCGCTACG 60.873 66.667 0.00 0.00 0.00 3.51
768 780 2.505557 CCGACGACCAACCGCTAC 60.506 66.667 0.00 0.00 0.00 3.58
769 781 4.424566 GCCGACGACCAACCGCTA 62.425 66.667 0.00 0.00 0.00 4.26
772 784 4.403137 TACGCCGACGACCAACCG 62.403 66.667 0.00 0.00 43.93 4.44
773 785 2.806621 GTACGCCGACGACCAACC 60.807 66.667 0.00 0.00 43.93 3.77
774 786 2.507322 TACGTACGCCGACGACCAAC 62.507 60.000 16.72 0.00 45.82 3.77
775 787 2.239341 CTACGTACGCCGACGACCAA 62.239 60.000 16.72 0.00 45.82 3.67
776 788 2.739704 CTACGTACGCCGACGACCA 61.740 63.158 16.72 1.32 45.82 4.02
777 789 2.021931 CTACGTACGCCGACGACC 59.978 66.667 16.72 0.00 45.82 4.79
778 790 2.645936 GCTACGTACGCCGACGAC 60.646 66.667 16.72 0.00 45.82 4.34
779 791 3.864686 GGCTACGTACGCCGACGA 61.865 66.667 16.72 0.00 45.82 4.20
791 803 1.299468 CTCTCGCATGGACGGCTAC 60.299 63.158 0.00 0.00 0.00 3.58
805 817 2.861006 GTTTGAACCGCCGCTCTC 59.139 61.111 0.00 0.00 0.00 3.20
813 825 0.161024 GAAGCGACTCGTTTGAACCG 59.839 55.000 5.16 0.00 29.28 4.44
835 847 1.406219 CCAGTCACATTCGTCGCTCG 61.406 60.000 0.00 0.00 41.41 5.03
836 848 0.388649 ACCAGTCACATTCGTCGCTC 60.389 55.000 0.00 0.00 0.00 5.03
935 968 1.790818 GTAAGGTAGGGGTGAGGAGG 58.209 60.000 0.00 0.00 0.00 4.30
936 969 1.400737 CGTAAGGTAGGGGTGAGGAG 58.599 60.000 0.00 0.00 0.00 3.69
937 970 0.685458 GCGTAAGGTAGGGGTGAGGA 60.685 60.000 0.00 0.00 38.28 3.71
980 1013 9.594478 CGGGCATGTAGTGATATTTATATACAA 57.406 33.333 0.00 0.00 0.00 2.41
981 1014 8.201464 CCGGGCATGTAGTGATATTTATATACA 58.799 37.037 0.00 0.00 0.00 2.29
982 1015 8.202137 ACCGGGCATGTAGTGATATTTATATAC 58.798 37.037 6.32 0.00 0.00 1.47
983 1016 8.313944 ACCGGGCATGTAGTGATATTTATATA 57.686 34.615 6.32 0.00 0.00 0.86
984 1017 7.195374 ACCGGGCATGTAGTGATATTTATAT 57.805 36.000 6.32 0.00 0.00 0.86
996 1029 1.520192 TGCACTACCGGGCATGTAG 59.480 57.895 6.32 10.14 41.17 2.74
1019 1052 2.359107 CCATGTCGCACTGGCACT 60.359 61.111 0.00 0.00 41.24 4.40
1025 1058 0.176680 GACCATCTCCATGTCGCACT 59.823 55.000 0.00 0.00 0.00 4.40
1032 1065 1.693062 CCTCCAGAGACCATCTCCATG 59.307 57.143 2.18 0.00 44.42 3.66
1062 1095 3.775654 CCTCCAGGGGTGTCGCTC 61.776 72.222 0.00 0.00 33.62 5.03
1066 1099 1.229529 TTCCTCCTCCAGGGGTGTC 60.230 63.158 0.00 0.00 43.67 3.67
1067 1100 1.229658 CTTCCTCCTCCAGGGGTGT 60.230 63.158 0.00 0.00 43.67 4.16
1068 1101 1.997874 CCTTCCTCCTCCAGGGGTG 60.998 68.421 0.00 0.00 43.67 4.61
1069 1102 2.184631 TCCTTCCTCCTCCAGGGGT 61.185 63.158 0.00 0.00 43.67 4.95
1070 1103 1.383803 CTCCTTCCTCCTCCAGGGG 60.384 68.421 0.00 0.00 43.67 4.79
1071 1104 0.043334 TTCTCCTTCCTCCTCCAGGG 59.957 60.000 0.00 0.00 43.67 4.45
1072 1105 1.494960 CTTCTCCTTCCTCCTCCAGG 58.505 60.000 0.00 0.00 45.15 4.45
1073 1106 0.829990 GCTTCTCCTTCCTCCTCCAG 59.170 60.000 0.00 0.00 0.00 3.86
1074 1107 0.618968 GGCTTCTCCTTCCTCCTCCA 60.619 60.000 0.00 0.00 0.00 3.86
1075 1108 1.681486 CGGCTTCTCCTTCCTCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
1076 1109 1.819905 CGGCTTCTCCTTCCTCCTC 59.180 63.158 0.00 0.00 0.00 3.71
1077 1110 2.363172 GCGGCTTCTCCTTCCTCCT 61.363 63.158 0.00 0.00 0.00 3.69
1078 1111 2.188207 GCGGCTTCTCCTTCCTCC 59.812 66.667 0.00 0.00 0.00 4.30
1079 1112 2.188207 GGCGGCTTCTCCTTCCTC 59.812 66.667 0.00 0.00 0.00 3.71
1080 1113 3.403558 GGGCGGCTTCTCCTTCCT 61.404 66.667 9.56 0.00 0.00 3.36
1081 1114 3.403558 AGGGCGGCTTCTCCTTCC 61.404 66.667 9.56 0.00 0.00 3.46
1082 1115 2.124942 CAGGGCGGCTTCTCCTTC 60.125 66.667 9.56 0.00 0.00 3.46
1083 1116 4.416738 GCAGGGCGGCTTCTCCTT 62.417 66.667 9.56 0.00 0.00 3.36
1106 1139 2.009774 CCAGTAGCTTTATTGTGCGCT 58.990 47.619 9.73 0.00 36.56 5.92
1164 1201 1.678970 GTCCACCACATCCTTGCCC 60.679 63.158 0.00 0.00 0.00 5.36
1167 1204 1.826385 GGAAGTCCACCACATCCTTG 58.174 55.000 0.00 0.00 39.47 3.61
1204 1241 4.530857 GACGGTGCCGATGGGGAG 62.531 72.222 18.16 0.00 42.83 4.30
1308 1345 1.377202 GGCGTCCCTTGCATCTTCA 60.377 57.895 0.00 0.00 0.00 3.02
1425 1462 0.458543 CCTTGAGGTCGTCCGTGATG 60.459 60.000 0.00 0.00 39.05 3.07
1488 1525 3.717294 GGGTCCCTGATGCGGTGT 61.717 66.667 0.00 0.00 0.00 4.16
1571 1608 7.160049 TCAACCGATCGATCTCTACTAATAGT 58.840 38.462 22.43 0.00 0.00 2.12
1574 1611 6.879276 TTCAACCGATCGATCTCTACTAAT 57.121 37.500 22.43 0.00 0.00 1.73
1613 1652 7.978414 TCTTCAGACTCTGACAAACATCATATC 59.022 37.037 8.35 0.00 40.46 1.63
1614 1653 7.845037 TCTTCAGACTCTGACAAACATCATAT 58.155 34.615 8.35 0.00 40.46 1.78
1625 1664 5.678616 GCCTTGAGTATCTTCAGACTCTGAC 60.679 48.000 8.35 0.00 40.46 3.51
1644 1683 2.320587 GGACTGCAGTGACGCCTTG 61.321 63.158 27.27 0.00 0.00 3.61
1698 1737 3.135994 GACTCTTGAGGTTGCGGTTTAA 58.864 45.455 2.55 0.00 0.00 1.52
1754 1793 0.388649 CCGACACGGGAAGAAGACTG 60.389 60.000 0.00 0.00 44.15 3.51
1794 1833 3.769739 TCACCAAAGCTAGACACACAT 57.230 42.857 0.00 0.00 0.00 3.21
1832 1872 8.358148 AGACTCTTTACTTAATGTTCTTCACGA 58.642 33.333 0.00 0.00 0.00 4.35
1842 1882 8.095169 ACCACTAACCAGACTCTTTACTTAATG 58.905 37.037 0.00 0.00 0.00 1.90
1845 1885 7.607615 AACCACTAACCAGACTCTTTACTTA 57.392 36.000 0.00 0.00 0.00 2.24
1858 1898 3.588396 CCCCTAACCTAAACCACTAACCA 59.412 47.826 0.00 0.00 0.00 3.67
1883 1923 1.529713 GCACCCCCGAGGACAAAAA 60.530 57.895 0.00 0.00 39.89 1.94
1922 1962 4.527509 AGACAATCTCGAAGAAGAAGCA 57.472 40.909 0.00 0.00 34.09 3.91
1924 1964 4.560819 CGGAAGACAATCTCGAAGAAGAAG 59.439 45.833 0.00 0.00 34.09 2.85
1949 1989 3.823304 ACAAACTCAAGGAGGATTGAAGC 59.177 43.478 16.02 0.00 38.66 3.86
1954 1994 4.086706 ACGAACAAACTCAAGGAGGATT 57.913 40.909 0.00 0.00 33.35 3.01
1963 2003 6.565060 CGATTATGTCCAAACGAACAAACTCA 60.565 38.462 0.00 0.00 0.00 3.41
1966 2006 4.849383 CCGATTATGTCCAAACGAACAAAC 59.151 41.667 0.00 0.00 0.00 2.93
1976 2016 1.837439 AGCTCCACCGATTATGTCCAA 59.163 47.619 0.00 0.00 0.00 3.53
1988 2028 1.043673 ATCTACACCGGAGCTCCACC 61.044 60.000 31.67 6.72 35.14 4.61
1989 2029 0.824759 AATCTACACCGGAGCTCCAC 59.175 55.000 31.67 6.74 35.14 4.02
2015 2055 1.592223 CTCACCGTCCCAAGGAGAC 59.408 63.158 0.00 0.00 29.39 3.36
2036 2076 1.442769 CCACATGACGAGAAACCCTG 58.557 55.000 0.00 0.00 0.00 4.45
2065 2105 4.865365 GCATAGAACTGAACCACTAGACAC 59.135 45.833 0.00 0.00 0.00 3.67
2071 2111 3.560025 CCCTTGCATAGAACTGAACCACT 60.560 47.826 0.00 0.00 0.00 4.00
2075 2115 4.072131 TGAACCCTTGCATAGAACTGAAC 58.928 43.478 0.00 0.00 0.00 3.18
2088 2128 0.953471 TCGTCGCCATTGAACCCTTG 60.953 55.000 0.00 0.00 0.00 3.61
2096 2136 4.147322 GCACCGTCGTCGCCATTG 62.147 66.667 0.00 0.00 35.54 2.82
2134 2177 2.884012 TGGAAAATCTTCATGCACGTGT 59.116 40.909 18.38 0.00 32.75 4.49
2141 2184 6.426025 TCGATGATAGCTGGAAAATCTTCATG 59.574 38.462 0.00 0.00 32.75 3.07
2147 2190 5.866633 CCTAGTCGATGATAGCTGGAAAATC 59.133 44.000 0.00 0.00 0.00 2.17
2165 2208 2.760385 AGCCGGCCTGACCTAGTC 60.760 66.667 26.15 0.00 35.61 2.59
2183 2226 3.066190 TCACCGCTGGACTACCGG 61.066 66.667 0.00 0.00 46.97 5.28
2192 2235 2.048222 ACACCGATGTCACCGCTG 60.048 61.111 0.00 0.00 31.55 5.18
2207 2250 4.409218 GTACGAGCCGCCGACACA 62.409 66.667 8.04 0.00 0.00 3.72
2208 2251 4.112341 AGTACGAGCCGCCGACAC 62.112 66.667 8.04 5.77 0.00 3.67
2209 2252 3.807538 GAGTACGAGCCGCCGACA 61.808 66.667 8.04 0.00 0.00 4.35
2213 2256 2.126189 AAACGAGTACGAGCCGCC 60.126 61.111 0.00 0.00 42.66 6.13
2214 2257 0.801067 ATCAAACGAGTACGAGCCGC 60.801 55.000 0.00 0.00 42.66 6.53
2215 2258 0.914551 CATCAAACGAGTACGAGCCG 59.085 55.000 0.00 0.00 42.66 5.52
2216 2259 1.278238 CCATCAAACGAGTACGAGCC 58.722 55.000 0.00 0.00 42.66 4.70
2217 2260 1.918609 GACCATCAAACGAGTACGAGC 59.081 52.381 0.00 0.00 42.66 5.03
2229 2272 8.634335 TTACATTGAGATTTTGAGACCATCAA 57.366 30.769 0.00 0.00 46.31 2.57
2230 2273 8.812513 ATTACATTGAGATTTTGAGACCATCA 57.187 30.769 0.00 0.00 35.62 3.07
2322 2371 9.256228 TGAATAGATACCAGATGATAACTACCC 57.744 37.037 0.00 0.00 0.00 3.69
2324 2373 9.796120 GCTGAATAGATACCAGATGATAACTAC 57.204 37.037 0.00 0.00 0.00 2.73
2353 2402 4.869861 TGATCGGTGATTTACAGTCACATG 59.130 41.667 8.33 0.00 45.99 3.21
2396 2445 4.136796 TCACAGTTGATTCAAGGACCAAG 58.863 43.478 0.00 0.00 0.00 3.61
2409 2458 4.878971 TCACGGAAGAAAAATCACAGTTGA 59.121 37.500 0.00 0.00 35.73 3.18
2428 2477 4.000557 GCACAGTGCACCGTCACG 62.001 66.667 21.22 0.00 44.26 4.35
2446 2495 1.613437 CGCCAAAGTCCAACCAAGATT 59.387 47.619 0.00 0.00 0.00 2.40
2464 2513 5.358298 AGAAGTTGTTATCAAAAGGACGC 57.642 39.130 0.00 0.00 35.20 5.19
2468 2517 6.003950 TCCAGGAGAAGTTGTTATCAAAAGG 58.996 40.000 0.00 0.00 35.20 3.11
2476 2525 4.215399 CGCAAAATCCAGGAGAAGTTGTTA 59.785 41.667 0.00 0.00 0.00 2.41
2534 2584 7.780271 ACTTTAAATTCATGGAGGAGATTACCC 59.220 37.037 0.00 0.00 0.00 3.69
2549 2599 9.603189 TGGAATAAAGGGGTTACTTTAAATTCA 57.397 29.630 12.49 5.02 43.73 2.57
2552 2602 9.610104 AGTTGGAATAAAGGGGTTACTTTAAAT 57.390 29.630 2.93 0.00 43.73 1.40
2556 2606 9.031537 CATTAGTTGGAATAAAGGGGTTACTTT 57.968 33.333 0.00 0.00 42.83 2.66
2557 2607 8.589701 CATTAGTTGGAATAAAGGGGTTACTT 57.410 34.615 0.00 0.00 0.00 2.24
2574 2624 8.960591 AGAAAATATCACAAGGTCCATTAGTTG 58.039 33.333 0.00 0.00 0.00 3.16
2575 2625 9.533831 AAGAAAATATCACAAGGTCCATTAGTT 57.466 29.630 0.00 0.00 0.00 2.24
2576 2626 9.178758 GAAGAAAATATCACAAGGTCCATTAGT 57.821 33.333 0.00 0.00 0.00 2.24
2577 2627 9.177608 TGAAGAAAATATCACAAGGTCCATTAG 57.822 33.333 0.00 0.00 0.00 1.73
2578 2628 9.177608 CTGAAGAAAATATCACAAGGTCCATTA 57.822 33.333 0.00 0.00 0.00 1.90
2579 2629 7.671398 ACTGAAGAAAATATCACAAGGTCCATT 59.329 33.333 0.00 0.00 0.00 3.16
2580 2630 7.177878 ACTGAAGAAAATATCACAAGGTCCAT 58.822 34.615 0.00 0.00 0.00 3.41
2581 2631 6.542821 ACTGAAGAAAATATCACAAGGTCCA 58.457 36.000 0.00 0.00 0.00 4.02
2582 2632 8.561738 TTACTGAAGAAAATATCACAAGGTCC 57.438 34.615 0.00 0.00 0.00 4.46
2583 2633 9.994432 CATTACTGAAGAAAATATCACAAGGTC 57.006 33.333 0.00 0.00 0.00 3.85
2584 2634 8.462016 GCATTACTGAAGAAAATATCACAAGGT 58.538 33.333 0.00 0.00 0.00 3.50
2585 2635 8.680903 AGCATTACTGAAGAAAATATCACAAGG 58.319 33.333 0.00 0.00 0.00 3.61
2588 2638 9.665719 TGTAGCATTACTGAAGAAAATATCACA 57.334 29.630 0.00 0.00 0.00 3.58
2589 2639 9.922305 GTGTAGCATTACTGAAGAAAATATCAC 57.078 33.333 0.00 0.00 0.00 3.06
2590 2640 9.109393 GGTGTAGCATTACTGAAGAAAATATCA 57.891 33.333 0.00 0.00 0.00 2.15
2591 2641 9.331282 AGGTGTAGCATTACTGAAGAAAATATC 57.669 33.333 0.00 0.00 0.00 1.63
2594 2644 9.113838 CATAGGTGTAGCATTACTGAAGAAAAT 57.886 33.333 0.00 0.00 0.00 1.82
2595 2645 8.100791 ACATAGGTGTAGCATTACTGAAGAAAA 58.899 33.333 0.00 0.00 36.63 2.29
2596 2646 7.620880 ACATAGGTGTAGCATTACTGAAGAAA 58.379 34.615 0.00 0.00 36.63 2.52
2597 2647 7.182817 ACATAGGTGTAGCATTACTGAAGAA 57.817 36.000 0.00 0.00 36.63 2.52
2598 2648 6.791867 ACATAGGTGTAGCATTACTGAAGA 57.208 37.500 0.00 0.00 36.63 2.87
2599 2649 9.547753 AATTACATAGGTGTAGCATTACTGAAG 57.452 33.333 0.00 0.00 41.56 3.02
2600 2650 9.899661 AAATTACATAGGTGTAGCATTACTGAA 57.100 29.630 0.00 0.00 41.56 3.02
2601 2651 9.899661 AAAATTACATAGGTGTAGCATTACTGA 57.100 29.630 0.00 0.00 41.56 3.41
2627 2677 2.409975 CCAAGGCGTACTCTCGAAAAA 58.590 47.619 0.00 0.00 0.00 1.94
2628 2678 1.938016 GCCAAGGCGTACTCTCGAAAA 60.938 52.381 0.00 0.00 0.00 2.29
2629 2679 0.389426 GCCAAGGCGTACTCTCGAAA 60.389 55.000 0.00 0.00 0.00 3.46
2630 2680 1.214589 GCCAAGGCGTACTCTCGAA 59.785 57.895 0.00 0.00 0.00 3.71
2631 2681 2.882876 GCCAAGGCGTACTCTCGA 59.117 61.111 0.00 0.00 0.00 4.04
2646 2696 5.169295 CCTTCTATAAAGCTATGGTACGCC 58.831 45.833 0.00 0.00 0.00 5.68
2647 2697 4.626172 GCCTTCTATAAAGCTATGGTACGC 59.374 45.833 0.00 0.00 0.00 4.42
2648 2698 5.779922 TGCCTTCTATAAAGCTATGGTACG 58.220 41.667 0.00 0.00 0.00 3.67
2649 2699 8.446599 TTTTGCCTTCTATAAAGCTATGGTAC 57.553 34.615 0.00 0.00 0.00 3.34
2650 2700 9.640952 AATTTTGCCTTCTATAAAGCTATGGTA 57.359 29.630 0.00 0.00 0.00 3.25
2651 2701 8.539117 AATTTTGCCTTCTATAAAGCTATGGT 57.461 30.769 0.00 0.00 0.00 3.55
2656 2706 9.467796 AACTCTAATTTTGCCTTCTATAAAGCT 57.532 29.630 0.00 0.00 0.00 3.74
2662 2712 9.959721 TCTTGTAACTCTAATTTTGCCTTCTAT 57.040 29.630 0.00 0.00 0.00 1.98
2663 2713 9.787435 TTCTTGTAACTCTAATTTTGCCTTCTA 57.213 29.630 0.00 0.00 0.00 2.10
2664 2714 8.691661 TTCTTGTAACTCTAATTTTGCCTTCT 57.308 30.769 0.00 0.00 0.00 2.85
2665 2715 9.181805 GTTTCTTGTAACTCTAATTTTGCCTTC 57.818 33.333 0.00 0.00 0.00 3.46
2666 2716 8.914011 AGTTTCTTGTAACTCTAATTTTGCCTT 58.086 29.630 0.00 0.00 33.12 4.35
2667 2717 8.465273 AGTTTCTTGTAACTCTAATTTTGCCT 57.535 30.769 0.00 0.00 33.12 4.75
2668 2718 9.608617 GTAGTTTCTTGTAACTCTAATTTTGCC 57.391 33.333 0.00 0.00 39.08 4.52
2673 2723 9.408069 CGAGTGTAGTTTCTTGTAACTCTAATT 57.592 33.333 0.00 0.00 39.08 1.40
2674 2724 7.541437 GCGAGTGTAGTTTCTTGTAACTCTAAT 59.459 37.037 0.00 0.00 39.08 1.73
2675 2725 6.860023 GCGAGTGTAGTTTCTTGTAACTCTAA 59.140 38.462 0.00 0.00 39.08 2.10
2676 2726 6.206243 AGCGAGTGTAGTTTCTTGTAACTCTA 59.794 38.462 0.00 0.00 39.08 2.43
2677 2727 5.009811 AGCGAGTGTAGTTTCTTGTAACTCT 59.990 40.000 0.00 0.00 39.08 3.24
2678 2728 5.221130 AGCGAGTGTAGTTTCTTGTAACTC 58.779 41.667 0.00 0.00 39.08 3.01
2679 2729 5.197682 AGCGAGTGTAGTTTCTTGTAACT 57.802 39.130 0.00 0.00 41.13 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.