Multiple sequence alignment - TraesCS4A01G435200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G435200 chr4A 100.000 3941 0 0 1 3941 705540254 705536314 0.000000e+00 7278.0
1 TraesCS4A01G435200 chr7D 86.245 2959 220 84 588 3478 22614395 22611556 0.000000e+00 3037.0
2 TraesCS4A01G435200 chr7D 93.968 315 15 3 3571 3882 22611349 22611036 1.280000e-129 473.0
3 TraesCS4A01G435200 chr7D 81.340 209 12 15 195 395 22614942 22614753 1.140000e-30 145.0
4 TraesCS4A01G435200 chr7D 98.077 52 1 0 3890 3941 64257736 64257787 1.510000e-14 91.6
5 TraesCS4A01G435200 chr7D 100.000 34 0 0 3543 3576 22611393 22611360 3.290000e-06 63.9
6 TraesCS4A01G435200 chr7A 90.515 2214 143 32 1173 3350 22963754 22961572 0.000000e+00 2863.0
7 TraesCS4A01G435200 chr7A 81.951 205 12 16 195 392 22971451 22971265 2.450000e-32 150.0
8 TraesCS4A01G435200 chr7A 76.899 316 36 16 810 1124 22964031 22963752 1.140000e-30 145.0
9 TraesCS4A01G435200 chr7A 97.917 48 0 1 393 439 437074371 437074418 9.080000e-12 82.4
10 TraesCS4A01G435200 chr7A 95.918 49 1 1 391 438 289159685 289159733 1.170000e-10 78.7
11 TraesCS4A01G435200 chr7A 93.878 49 2 1 526 574 234540570 234540523 5.460000e-09 73.1
12 TraesCS4A01G435200 chr2D 83.438 640 54 28 839 1474 476933488 476934079 7.450000e-152 547.0
13 TraesCS4A01G435200 chr5D 83.299 485 39 22 993 1474 515035848 515035403 3.670000e-110 409.0
14 TraesCS4A01G435200 chr3A 82.727 110 17 2 1306 1414 639148336 639148444 3.240000e-16 97.1
15 TraesCS4A01G435200 chr3A 95.918 49 2 0 393 441 734632820 734632868 3.260000e-11 80.5
16 TraesCS4A01G435200 chr3A 97.778 45 1 0 395 439 726016581 726016537 1.170000e-10 78.7
17 TraesCS4A01G435200 chr3A 100.000 41 0 0 527 567 668817204 668817164 4.220000e-10 76.8
18 TraesCS4A01G435200 chr3A 95.556 45 2 0 394 438 717299327 717299371 5.460000e-09 73.1
19 TraesCS4A01G435200 chrUn 98.077 52 1 0 3890 3941 109005061 109005010 1.510000e-14 91.6
20 TraesCS4A01G435200 chr5A 100.000 49 0 0 393 441 502921903 502921951 1.510000e-14 91.6
21 TraesCS4A01G435200 chr5A 97.619 42 0 1 526 566 280979932 280979973 1.960000e-08 71.3
22 TraesCS4A01G435200 chr5A 97.619 42 0 1 526 566 509979549 509979590 1.960000e-08 71.3
23 TraesCS4A01G435200 chr3D 98.077 52 1 0 3890 3941 2692499 2692550 1.510000e-14 91.6
24 TraesCS4A01G435200 chr3D 98.077 52 1 0 3890 3941 11456187 11456238 1.510000e-14 91.6
25 TraesCS4A01G435200 chr3D 98.077 52 1 0 3890 3941 484803941 484803992 1.510000e-14 91.6
26 TraesCS4A01G435200 chr3D 81.982 111 16 4 1306 1414 499947408 499947300 1.510000e-14 91.6
27 TraesCS4A01G435200 chr3D 98.077 52 1 0 3890 3941 587550618 587550567 1.510000e-14 91.6
28 TraesCS4A01G435200 chr3D 98.077 52 1 0 3890 3941 587550828 587550777 1.510000e-14 91.6
29 TraesCS4A01G435200 chr3B 81.982 111 16 4 1306 1414 661016931 661016823 1.510000e-14 91.6
30 TraesCS4A01G435200 chr3B 100.000 46 0 0 394 439 380897323 380897368 7.020000e-13 86.1
31 TraesCS4A01G435200 chr3B 85.714 70 9 1 3396 3465 465656691 465656623 5.460000e-09 73.1
32 TraesCS4A01G435200 chr1D 98.077 52 1 0 3890 3941 252921373 252921424 1.510000e-14 91.6
33 TraesCS4A01G435200 chr1A 98.077 52 1 0 3890 3941 568722282 568722333 1.510000e-14 91.6
34 TraesCS4A01G435200 chr2A 97.872 47 0 1 394 439 13066929 13066883 3.260000e-11 80.5
35 TraesCS4A01G435200 chr2A 82.353 85 14 1 1445 1529 11331253 11331170 5.460000e-09 73.1
36 TraesCS4A01G435200 chr2A 93.878 49 1 2 393 441 66767195 66767241 5.460000e-09 73.1
37 TraesCS4A01G435200 chr2B 100.000 40 0 0 526 565 511123916 511123877 1.520000e-09 75.0
38 TraesCS4A01G435200 chr6B 97.619 42 0 1 526 566 198375377 198375418 1.960000e-08 71.3
39 TraesCS4A01G435200 chr6B 97.619 42 0 1 526 566 615633931 615633890 1.960000e-08 71.3
40 TraesCS4A01G435200 chr6A 97.561 41 1 0 527 567 15684437 15684397 1.960000e-08 71.3
41 TraesCS4A01G435200 chr1B 97.619 42 0 1 526 566 539924807 539924766 1.960000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G435200 chr4A 705536314 705540254 3940 True 7278.000 7278 100.00000 1 3941 1 chr4A.!!$R1 3940
1 TraesCS4A01G435200 chr7D 22611036 22614942 3906 True 929.725 3037 90.38825 195 3882 4 chr7D.!!$R1 3687
2 TraesCS4A01G435200 chr7A 22961572 22964031 2459 True 1504.000 2863 83.70700 810 3350 2 chr7A.!!$R3 2540
3 TraesCS4A01G435200 chr2D 476933488 476934079 591 False 547.000 547 83.43800 839 1474 1 chr2D.!!$F1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.111266 GCTACGTGTGCACTTGTTCG 60.111 55.000 19.41 15.79 0.00 3.95 F
187 188 0.185901 AAATGGATCCGGATGGGGTG 59.814 55.000 24.82 0.00 36.01 4.61 F
604 800 0.895530 TCATGTCACGTCTCCTTCCC 59.104 55.000 0.00 0.00 0.00 3.97 F
659 855 1.076412 TTGACCCAGCCAAAGCACA 60.076 52.632 0.00 0.00 43.56 4.57 F
2244 2515 0.458889 CCAATGCACGCCAATTCCTG 60.459 55.000 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2313 0.239347 GACACATGTGGTCTTGCAGC 59.761 55.000 28.64 3.95 34.19 5.25 R
2051 2315 1.140652 TCAGACACATGTGGTCTTGCA 59.859 47.619 28.64 12.11 42.77 4.08 R
2244 2515 0.741221 GCTCTGATGTGGGTTCGGAC 60.741 60.000 0.00 0.00 0.00 4.79 R
2390 2662 0.843309 TTTGCCTTCTCCACCTGACA 59.157 50.000 0.00 0.00 0.00 3.58 R
3350 3639 0.178964 CACCCTCTCCCCAAAAAGCA 60.179 55.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.977129 ACTAATTTAGCGCCATAAATGTTGC 59.023 36.000 13.50 0.00 35.91 4.17
26 27 4.654091 ATTTAGCGCCATAAATGTTGCT 57.346 36.364 12.36 10.01 38.99 3.91
27 28 5.766150 ATTTAGCGCCATAAATGTTGCTA 57.234 34.783 12.36 8.49 37.48 3.49
28 29 4.545823 TTAGCGCCATAAATGTTGCTAC 57.454 40.909 2.29 0.00 37.91 3.58
29 30 2.643551 AGCGCCATAAATGTTGCTACT 58.356 42.857 2.29 0.00 35.47 2.57
30 31 3.016736 AGCGCCATAAATGTTGCTACTT 58.983 40.909 2.29 0.00 35.47 2.24
31 32 3.443681 AGCGCCATAAATGTTGCTACTTT 59.556 39.130 2.29 0.00 35.47 2.66
32 33 4.082245 AGCGCCATAAATGTTGCTACTTTT 60.082 37.500 2.29 14.54 35.47 2.27
33 34 4.625311 GCGCCATAAATGTTGCTACTTTTT 59.375 37.500 15.15 10.04 34.56 1.94
34 35 5.802956 GCGCCATAAATGTTGCTACTTTTTA 59.197 36.000 15.15 11.54 34.56 1.52
35 36 6.475402 GCGCCATAAATGTTGCTACTTTTTAT 59.525 34.615 15.15 12.90 34.56 1.40
36 37 7.010091 GCGCCATAAATGTTGCTACTTTTTATT 59.990 33.333 15.15 0.00 34.56 1.40
37 38 8.868916 CGCCATAAATGTTGCTACTTTTTATTT 58.131 29.630 15.15 7.77 34.56 1.40
46 47 9.877178 TGTTGCTACTTTTTATTTTTCCTGAAA 57.123 25.926 0.00 0.00 0.00 2.69
49 50 9.040939 TGCTACTTTTTATTTTTCCTGAAAAGC 57.959 29.630 5.32 2.89 40.35 3.51
50 51 9.261180 GCTACTTTTTATTTTTCCTGAAAAGCT 57.739 29.630 5.32 0.00 40.35 3.74
53 54 9.448438 ACTTTTTATTTTTCCTGAAAAGCTGTT 57.552 25.926 5.32 0.00 40.35 3.16
54 55 9.920826 CTTTTTATTTTTCCTGAAAAGCTGTTC 57.079 29.630 9.90 9.90 40.35 3.18
55 56 9.442047 TTTTTATTTTTCCTGAAAAGCTGTTCA 57.558 25.926 18.37 18.37 40.35 3.18
56 57 9.442047 TTTTATTTTTCCTGAAAAGCTGTTCAA 57.558 25.926 19.78 3.85 40.35 2.69
57 58 9.442047 TTTATTTTTCCTGAAAAGCTGTTCAAA 57.558 25.926 19.78 11.33 40.35 2.69
58 59 6.966435 TTTTTCCTGAAAAGCTGTTCAAAG 57.034 33.333 19.78 14.02 40.83 2.77
59 60 5.659440 TTTCCTGAAAAGCTGTTCAAAGT 57.341 34.783 19.78 0.00 37.08 2.66
60 61 5.659440 TTCCTGAAAAGCTGTTCAAAGTT 57.341 34.783 19.78 0.00 37.08 2.66
61 62 5.659440 TCCTGAAAAGCTGTTCAAAGTTT 57.341 34.783 19.78 0.00 37.08 2.66
62 63 6.036577 TCCTGAAAAGCTGTTCAAAGTTTT 57.963 33.333 19.78 0.00 37.08 2.43
63 64 7.164230 TCCTGAAAAGCTGTTCAAAGTTTTA 57.836 32.000 19.78 0.00 37.08 1.52
64 65 7.607250 TCCTGAAAAGCTGTTCAAAGTTTTAA 58.393 30.769 19.78 0.00 37.08 1.52
65 66 8.091449 TCCTGAAAAGCTGTTCAAAGTTTTAAA 58.909 29.630 19.78 0.00 37.08 1.52
66 67 8.716909 CCTGAAAAGCTGTTCAAAGTTTTAAAA 58.283 29.630 19.78 0.00 37.08 1.52
67 68 9.745323 CTGAAAAGCTGTTCAAAGTTTTAAAAG 57.255 29.630 19.78 0.72 37.08 2.27
68 69 8.227119 TGAAAAGCTGTTCAAAGTTTTAAAAGC 58.773 29.630 17.22 14.41 34.59 3.51
69 70 7.905604 AAAGCTGTTCAAAGTTTTAAAAGCT 57.094 28.000 17.81 17.81 29.94 3.74
70 71 7.905604 AAGCTGTTCAAAGTTTTAAAAGCTT 57.094 28.000 24.80 24.80 33.62 3.74
71 72 7.294676 AGCTGTTCAAAGTTTTAAAAGCTTG 57.705 32.000 17.81 8.02 0.00 4.01
72 73 7.096551 AGCTGTTCAAAGTTTTAAAAGCTTGA 58.903 30.769 17.81 15.68 0.00 3.02
73 74 7.063426 AGCTGTTCAAAGTTTTAAAAGCTTGAC 59.937 33.333 17.81 14.60 0.00 3.18
74 75 7.063426 GCTGTTCAAAGTTTTAAAAGCTTGACT 59.937 33.333 14.81 3.84 0.00 3.41
75 76 8.825667 TGTTCAAAGTTTTAAAAGCTTGACTT 57.174 26.923 17.92 8.75 41.70 3.01
76 77 9.915629 TGTTCAAAGTTTTAAAAGCTTGACTTA 57.084 25.926 17.92 7.14 37.75 2.24
78 79 9.581099 TTCAAAGTTTTAAAAGCTTGACTTAGG 57.419 29.630 17.92 8.02 37.75 2.69
79 80 8.962679 TCAAAGTTTTAAAAGCTTGACTTAGGA 58.037 29.630 15.68 8.44 37.75 2.94
80 81 9.020813 CAAAGTTTTAAAAGCTTGACTTAGGAC 57.979 33.333 0.00 0.00 37.75 3.85
81 82 7.875327 AGTTTTAAAAGCTTGACTTAGGACA 57.125 32.000 0.00 0.00 37.75 4.02
82 83 8.288689 AGTTTTAAAAGCTTGACTTAGGACAA 57.711 30.769 0.00 0.00 37.75 3.18
83 84 8.745590 AGTTTTAAAAGCTTGACTTAGGACAAA 58.254 29.630 0.00 0.00 37.75 2.83
84 85 9.361315 GTTTTAAAAGCTTGACTTAGGACAAAA 57.639 29.630 0.00 0.00 37.75 2.44
85 86 9.581099 TTTTAAAAGCTTGACTTAGGACAAAAG 57.419 29.630 0.00 0.00 37.75 2.27
86 87 4.837896 AAGCTTGACTTAGGACAAAAGC 57.162 40.909 0.00 0.00 36.62 3.51
87 88 4.092116 AGCTTGACTTAGGACAAAAGCT 57.908 40.909 2.03 2.03 0.00 3.74
88 89 5.228945 AGCTTGACTTAGGACAAAAGCTA 57.771 39.130 5.95 0.00 31.36 3.32
89 90 4.998033 AGCTTGACTTAGGACAAAAGCTAC 59.002 41.667 5.95 0.00 31.36 3.58
90 91 4.143094 GCTTGACTTAGGACAAAAGCTACG 60.143 45.833 0.00 0.00 0.00 3.51
91 92 4.595762 TGACTTAGGACAAAAGCTACGT 57.404 40.909 0.00 0.00 0.00 3.57
92 93 4.304110 TGACTTAGGACAAAAGCTACGTG 58.696 43.478 0.00 0.00 0.00 4.49
93 94 4.202182 TGACTTAGGACAAAAGCTACGTGT 60.202 41.667 0.00 0.00 0.00 4.49
94 95 4.056050 ACTTAGGACAAAAGCTACGTGTG 58.944 43.478 0.00 0.00 0.00 3.82
95 96 1.226746 AGGACAAAAGCTACGTGTGC 58.773 50.000 0.00 2.26 34.17 4.57
96 97 0.941542 GGACAAAAGCTACGTGTGCA 59.058 50.000 15.75 0.00 34.15 4.57
97 98 1.333791 GGACAAAAGCTACGTGTGCAC 60.334 52.381 10.75 10.75 34.15 4.57
98 99 1.597663 GACAAAAGCTACGTGTGCACT 59.402 47.619 19.41 0.00 0.00 4.40
99 100 2.014128 ACAAAAGCTACGTGTGCACTT 58.986 42.857 19.41 4.90 0.00 3.16
100 101 2.223249 ACAAAAGCTACGTGTGCACTTG 60.223 45.455 19.41 12.68 33.46 3.16
101 102 1.663695 AAAGCTACGTGTGCACTTGT 58.336 45.000 19.41 17.81 0.00 3.16
102 103 1.663695 AAGCTACGTGTGCACTTGTT 58.336 45.000 19.41 2.24 0.00 2.83
103 104 1.217882 AGCTACGTGTGCACTTGTTC 58.782 50.000 19.41 11.04 0.00 3.18
104 105 0.111266 GCTACGTGTGCACTTGTTCG 60.111 55.000 19.41 15.79 0.00 3.95
105 106 1.205657 CTACGTGTGCACTTGTTCGT 58.794 50.000 19.41 19.96 35.73 3.85
106 107 1.189446 CTACGTGTGCACTTGTTCGTC 59.811 52.381 19.41 0.00 33.70 4.20
107 108 1.084290 CGTGTGCACTTGTTCGTCG 60.084 57.895 19.41 6.21 0.00 5.12
108 109 1.367665 GTGTGCACTTGTTCGTCGC 60.368 57.895 19.41 0.00 0.00 5.19
109 110 2.128128 GTGCACTTGTTCGTCGCG 60.128 61.111 10.32 0.00 0.00 5.87
110 111 3.334751 TGCACTTGTTCGTCGCGG 61.335 61.111 6.13 0.00 0.00 6.46
111 112 3.033764 GCACTTGTTCGTCGCGGA 61.034 61.111 6.13 0.00 0.00 5.54
112 113 2.591311 GCACTTGTTCGTCGCGGAA 61.591 57.895 6.13 0.00 0.00 4.30
113 114 1.487231 CACTTGTTCGTCGCGGAAG 59.513 57.895 6.13 0.00 0.00 3.46
114 115 1.663702 ACTTGTTCGTCGCGGAAGG 60.664 57.895 6.13 0.00 0.00 3.46
115 116 1.372499 CTTGTTCGTCGCGGAAGGA 60.372 57.895 6.13 0.00 0.00 3.36
116 117 1.344942 CTTGTTCGTCGCGGAAGGAG 61.345 60.000 6.13 0.05 0.00 3.69
117 118 2.506438 GTTCGTCGCGGAAGGAGG 60.506 66.667 6.13 0.00 0.00 4.30
118 119 3.755628 TTCGTCGCGGAAGGAGGG 61.756 66.667 6.13 0.00 0.00 4.30
119 120 4.728110 TCGTCGCGGAAGGAGGGA 62.728 66.667 6.13 0.00 0.00 4.20
120 121 4.194720 CGTCGCGGAAGGAGGGAG 62.195 72.222 6.13 0.00 0.00 4.30
121 122 3.069318 GTCGCGGAAGGAGGGAGT 61.069 66.667 6.13 0.00 0.00 3.85
122 123 3.068691 TCGCGGAAGGAGGGAGTG 61.069 66.667 6.13 0.00 0.00 3.51
123 124 4.821589 CGCGGAAGGAGGGAGTGC 62.822 72.222 0.00 0.00 0.00 4.40
124 125 3.706373 GCGGAAGGAGGGAGTGCA 61.706 66.667 0.00 0.00 0.00 4.57
125 126 2.266055 CGGAAGGAGGGAGTGCAC 59.734 66.667 9.40 9.40 0.00 4.57
126 127 2.583441 CGGAAGGAGGGAGTGCACA 61.583 63.158 21.04 0.00 0.00 4.57
127 128 1.003233 GGAAGGAGGGAGTGCACAC 60.003 63.158 21.04 13.37 0.00 3.82
128 129 1.484444 GGAAGGAGGGAGTGCACACT 61.484 60.000 21.04 13.93 45.84 3.55
129 130 0.321122 GAAGGAGGGAGTGCACACTG 60.321 60.000 21.04 0.00 42.66 3.66
130 131 1.056700 AAGGAGGGAGTGCACACTGT 61.057 55.000 21.04 4.04 42.66 3.55
131 132 1.302033 GGAGGGAGTGCACACTGTG 60.302 63.158 21.04 6.19 42.66 3.66
151 152 2.315925 CTCCGATAGCAGCTTTGGAA 57.684 50.000 0.00 0.00 0.00 3.53
152 153 2.632377 CTCCGATAGCAGCTTTGGAAA 58.368 47.619 0.00 0.00 0.00 3.13
153 154 3.009723 CTCCGATAGCAGCTTTGGAAAA 58.990 45.455 0.00 0.00 0.00 2.29
154 155 3.417101 TCCGATAGCAGCTTTGGAAAAA 58.583 40.909 0.00 0.00 0.00 1.94
155 156 3.190535 TCCGATAGCAGCTTTGGAAAAAC 59.809 43.478 0.00 0.00 0.00 2.43
156 157 3.191371 CCGATAGCAGCTTTGGAAAAACT 59.809 43.478 0.00 0.00 0.00 2.66
157 158 4.161333 CGATAGCAGCTTTGGAAAAACTG 58.839 43.478 0.00 0.00 0.00 3.16
158 159 2.896745 AGCAGCTTTGGAAAAACTGG 57.103 45.000 0.00 0.00 0.00 4.00
159 160 2.110578 AGCAGCTTTGGAAAAACTGGT 58.889 42.857 0.00 2.84 34.47 4.00
160 161 2.101415 AGCAGCTTTGGAAAAACTGGTC 59.899 45.455 0.00 0.00 34.17 4.02
161 162 2.159114 GCAGCTTTGGAAAAACTGGTCA 60.159 45.455 5.55 0.00 0.00 4.02
162 163 3.709987 CAGCTTTGGAAAAACTGGTCAG 58.290 45.455 0.00 0.00 0.00 3.51
163 164 2.695147 AGCTTTGGAAAAACTGGTCAGG 59.305 45.455 2.87 0.00 0.00 3.86
164 165 2.224042 GCTTTGGAAAAACTGGTCAGGG 60.224 50.000 2.87 0.00 0.00 4.45
165 166 3.295973 CTTTGGAAAAACTGGTCAGGGA 58.704 45.455 2.87 0.00 0.00 4.20
166 167 3.390175 TTGGAAAAACTGGTCAGGGAA 57.610 42.857 2.87 0.00 0.00 3.97
167 168 3.390175 TGGAAAAACTGGTCAGGGAAA 57.610 42.857 2.87 0.00 0.00 3.13
168 169 3.714144 TGGAAAAACTGGTCAGGGAAAA 58.286 40.909 2.87 0.00 0.00 2.29
169 170 4.097418 TGGAAAAACTGGTCAGGGAAAAA 58.903 39.130 2.87 0.00 0.00 1.94
185 186 2.086610 AAAAATGGATCCGGATGGGG 57.913 50.000 24.82 0.00 36.01 4.96
186 187 0.933700 AAAATGGATCCGGATGGGGT 59.066 50.000 24.82 0.00 36.01 4.95
187 188 0.185901 AAATGGATCCGGATGGGGTG 59.814 55.000 24.82 0.00 36.01 4.61
188 189 0.993509 AATGGATCCGGATGGGGTGT 60.994 55.000 24.82 0.00 36.01 4.16
189 190 0.993509 ATGGATCCGGATGGGGTGTT 60.994 55.000 24.82 0.00 36.01 3.32
190 191 1.148498 GGATCCGGATGGGGTGTTC 59.852 63.158 24.82 5.11 36.01 3.18
191 192 1.148498 GATCCGGATGGGGTGTTCC 59.852 63.158 24.82 0.00 36.01 3.62
214 215 2.951475 TTTCGCTGCCCGTCACCTTT 62.951 55.000 0.00 0.00 38.35 3.11
215 216 3.726517 CGCTGCCCGTCACCTTTG 61.727 66.667 0.00 0.00 0.00 2.77
309 317 2.494918 CGTGAGGAAGGTAGGCCG 59.505 66.667 0.00 0.00 40.50 6.13
310 318 2.348888 CGTGAGGAAGGTAGGCCGT 61.349 63.158 0.00 0.00 40.50 5.68
311 319 1.218316 GTGAGGAAGGTAGGCCGTG 59.782 63.158 0.00 0.00 40.50 4.94
312 320 1.077805 TGAGGAAGGTAGGCCGTGA 59.922 57.895 0.00 0.00 40.50 4.35
313 321 1.255667 TGAGGAAGGTAGGCCGTGAC 61.256 60.000 0.00 0.00 40.50 3.67
314 322 1.229082 AGGAAGGTAGGCCGTGACA 60.229 57.895 0.00 0.00 40.50 3.58
359 367 1.522806 GTGTCGTGTGCCCACAAGA 60.523 57.895 11.97 11.97 45.06 3.02
365 373 1.335872 CGTGTGCCCACAAGAAATTCC 60.336 52.381 8.36 0.00 43.77 3.01
369 377 2.102252 GTGCCCACAAGAAATTCCACAA 59.898 45.455 0.00 0.00 0.00 3.33
370 378 2.768527 TGCCCACAAGAAATTCCACAAA 59.231 40.909 0.00 0.00 0.00 2.83
383 391 2.972505 ACAAAGTCACGCCCGCAG 60.973 61.111 0.00 0.00 0.00 5.18
395 403 2.049248 CCGCAGCGCAACCATTTT 60.049 55.556 11.47 0.00 0.00 1.82
396 404 1.664333 CCGCAGCGCAACCATTTTT 60.664 52.632 11.47 0.00 0.00 1.94
419 427 5.771602 TTTTTGCGGAAAAACTTTCAGTC 57.228 34.783 21.65 0.00 37.48 3.51
420 428 4.712122 TTTGCGGAAAAACTTTCAGTCT 57.288 36.364 0.00 0.00 0.00 3.24
421 429 5.821516 TTTGCGGAAAAACTTTCAGTCTA 57.178 34.783 0.00 0.00 0.00 2.59
422 430 6.385649 TTTGCGGAAAAACTTTCAGTCTAT 57.614 33.333 0.00 0.00 0.00 1.98
423 431 6.385649 TTGCGGAAAAACTTTCAGTCTATT 57.614 33.333 0.00 0.00 0.00 1.73
424 432 5.997385 TGCGGAAAAACTTTCAGTCTATTC 58.003 37.500 1.88 0.00 0.00 1.75
425 433 5.529430 TGCGGAAAAACTTTCAGTCTATTCA 59.471 36.000 1.88 0.00 0.00 2.57
426 434 6.206634 TGCGGAAAAACTTTCAGTCTATTCAT 59.793 34.615 1.88 0.00 0.00 2.57
427 435 6.743172 GCGGAAAAACTTTCAGTCTATTCATC 59.257 38.462 1.88 0.00 0.00 2.92
428 436 7.361286 GCGGAAAAACTTTCAGTCTATTCATCT 60.361 37.037 1.88 0.00 0.00 2.90
429 437 8.507249 CGGAAAAACTTTCAGTCTATTCATCTT 58.493 33.333 1.88 0.00 0.00 2.40
430 438 9.833182 GGAAAAACTTTCAGTCTATTCATCTTC 57.167 33.333 1.88 0.00 0.00 2.87
435 443 9.730705 AACTTTCAGTCTATTCATCTTCAATCA 57.269 29.630 0.00 0.00 0.00 2.57
436 444 9.902684 ACTTTCAGTCTATTCATCTTCAATCAT 57.097 29.630 0.00 0.00 0.00 2.45
438 446 8.672823 TTCAGTCTATTCATCTTCAATCATGG 57.327 34.615 0.00 0.00 0.00 3.66
443 451 1.672363 TCATCTTCAATCATGGCACGC 59.328 47.619 0.00 0.00 0.00 5.34
458 466 1.073216 CACGCTCATGTCACGTCTCC 61.073 60.000 7.30 0.00 38.09 3.71
461 469 1.634702 GCTCATGTCACGTCTCCTTC 58.365 55.000 0.00 0.00 0.00 3.46
462 470 1.737363 GCTCATGTCACGTCTCCTTCC 60.737 57.143 0.00 0.00 0.00 3.46
466 474 2.814280 TGTCACGTCTCCTTCCTTTC 57.186 50.000 0.00 0.00 0.00 2.62
467 475 2.317040 TGTCACGTCTCCTTCCTTTCT 58.683 47.619 0.00 0.00 0.00 2.52
468 476 2.698797 TGTCACGTCTCCTTCCTTTCTT 59.301 45.455 0.00 0.00 0.00 2.52
469 477 3.134081 TGTCACGTCTCCTTCCTTTCTTT 59.866 43.478 0.00 0.00 0.00 2.52
471 479 4.211584 GTCACGTCTCCTTCCTTTCTTTTC 59.788 45.833 0.00 0.00 0.00 2.29
472 480 3.184581 CACGTCTCCTTCCTTTCTTTTCG 59.815 47.826 0.00 0.00 0.00 3.46
473 481 3.069158 ACGTCTCCTTCCTTTCTTTTCGA 59.931 43.478 0.00 0.00 0.00 3.71
474 482 3.675698 CGTCTCCTTCCTTTCTTTTCGAG 59.324 47.826 0.00 0.00 0.00 4.04
476 484 3.646637 TCTCCTTCCTTTCTTTTCGAGGT 59.353 43.478 0.00 0.00 32.33 3.85
478 486 5.306160 TCTCCTTCCTTTCTTTTCGAGGTAA 59.694 40.000 0.00 0.00 32.33 2.85
479 487 6.013639 TCTCCTTCCTTTCTTTTCGAGGTAAT 60.014 38.462 0.00 0.00 32.33 1.89
480 488 7.179694 TCTCCTTCCTTTCTTTTCGAGGTAATA 59.820 37.037 0.00 0.00 32.33 0.98
484 492 7.477945 TCCTTTCTTTTCGAGGTAATAGAGT 57.522 36.000 0.00 0.00 32.33 3.24
486 494 8.373220 TCCTTTCTTTTCGAGGTAATAGAGTTT 58.627 33.333 0.00 0.00 32.33 2.66
487 495 9.000486 CCTTTCTTTTCGAGGTAATAGAGTTTT 58.000 33.333 0.00 0.00 0.00 2.43
494 502 9.947433 TTTCGAGGTAATAGAGTTTTTATTCCA 57.053 29.630 0.00 0.00 0.00 3.53
522 530 3.883830 AGAGTTACAGTCATGAGGCAG 57.116 47.619 0.00 0.00 0.00 4.85
524 532 3.834813 AGAGTTACAGTCATGAGGCAGAA 59.165 43.478 0.00 0.00 0.00 3.02
525 533 4.081752 AGAGTTACAGTCATGAGGCAGAAG 60.082 45.833 0.00 0.00 0.00 2.85
528 536 1.696336 ACAGTCATGAGGCAGAAGTGT 59.304 47.619 0.00 0.00 0.00 3.55
530 538 3.517100 ACAGTCATGAGGCAGAAGTGTAT 59.483 43.478 0.00 0.00 0.00 2.29
532 540 5.365025 ACAGTCATGAGGCAGAAGTGTATAT 59.635 40.000 0.00 0.00 0.00 0.86
533 541 5.695363 CAGTCATGAGGCAGAAGTGTATATG 59.305 44.000 0.00 0.00 0.00 1.78
534 542 5.600069 AGTCATGAGGCAGAAGTGTATATGA 59.400 40.000 0.00 0.00 0.00 2.15
535 543 5.925397 GTCATGAGGCAGAAGTGTATATGAG 59.075 44.000 0.00 0.00 0.00 2.90
536 544 4.327982 TGAGGCAGAAGTGTATATGAGC 57.672 45.455 0.00 0.00 0.00 4.26
537 545 3.243535 TGAGGCAGAAGTGTATATGAGCG 60.244 47.826 0.00 0.00 0.00 5.03
540 548 3.126831 GCAGAAGTGTATATGAGCGCTT 58.873 45.455 13.26 0.00 38.04 4.68
541 549 3.060003 GCAGAAGTGTATATGAGCGCTTG 60.060 47.826 13.26 1.23 35.83 4.01
542 550 4.115516 CAGAAGTGTATATGAGCGCTTGT 58.884 43.478 13.26 5.98 35.83 3.16
543 551 5.281727 CAGAAGTGTATATGAGCGCTTGTA 58.718 41.667 13.26 8.38 35.83 2.41
544 552 5.923114 CAGAAGTGTATATGAGCGCTTGTAT 59.077 40.000 13.26 15.39 35.83 2.29
545 553 6.088749 CAGAAGTGTATATGAGCGCTTGTATC 59.911 42.308 13.26 0.00 35.83 2.24
547 555 5.465051 AGTGTATATGAGCGCTTGTATCTG 58.535 41.667 13.26 0.00 0.00 2.90
548 556 5.010112 AGTGTATATGAGCGCTTGTATCTGT 59.990 40.000 13.26 0.00 0.00 3.41
549 557 6.206829 AGTGTATATGAGCGCTTGTATCTGTA 59.793 38.462 13.26 0.00 0.00 2.74
551 559 5.713792 ATATGAGCGCTTGTATCTGTACT 57.286 39.130 13.26 0.00 0.00 2.73
552 560 3.150848 TGAGCGCTTGTATCTGTACTG 57.849 47.619 13.26 0.00 0.00 2.74
554 562 3.381590 TGAGCGCTTGTATCTGTACTGAT 59.618 43.478 13.26 17.96 0.00 2.90
555 563 3.711086 AGCGCTTGTATCTGTACTGATG 58.289 45.455 21.69 8.88 0.00 3.07
557 565 3.865745 GCGCTTGTATCTGTACTGATGTT 59.134 43.478 21.69 3.03 0.00 2.71
558 566 5.041287 GCGCTTGTATCTGTACTGATGTTA 58.959 41.667 21.69 7.99 0.00 2.41
560 568 6.035650 GCGCTTGTATCTGTACTGATGTTAAA 59.964 38.462 21.69 11.22 0.00 1.52
561 569 7.412563 GCGCTTGTATCTGTACTGATGTTAAAA 60.413 37.037 21.69 6.11 0.00 1.52
562 570 8.440059 CGCTTGTATCTGTACTGATGTTAAAAA 58.560 33.333 21.69 5.81 0.00 1.94
604 800 0.895530 TCATGTCACGTCTCCTTCCC 59.104 55.000 0.00 0.00 0.00 3.97
621 817 1.078708 CCACCGTACCCATCACCAC 60.079 63.158 0.00 0.00 0.00 4.16
654 850 3.294493 GCGCTTGACCCAGCCAAA 61.294 61.111 0.00 0.00 36.31 3.28
655 851 2.956987 CGCTTGACCCAGCCAAAG 59.043 61.111 0.00 0.00 36.31 2.77
656 852 2.653115 GCTTGACCCAGCCAAAGC 59.347 61.111 0.00 0.00 40.32 3.51
657 853 2.202395 GCTTGACCCAGCCAAAGCA 61.202 57.895 1.57 0.00 43.56 3.91
658 854 1.662044 CTTGACCCAGCCAAAGCAC 59.338 57.895 0.00 0.00 43.56 4.40
659 855 1.076412 TTGACCCAGCCAAAGCACA 60.076 52.632 0.00 0.00 43.56 4.57
688 887 2.664851 CGTGGGCGAGCAAGTTGA 60.665 61.111 7.16 0.00 41.33 3.18
689 888 2.671177 CGTGGGCGAGCAAGTTGAG 61.671 63.158 7.16 0.00 41.33 3.02
690 889 2.669569 TGGGCGAGCAAGTTGAGC 60.670 61.111 7.16 8.36 0.00 4.26
691 890 3.435186 GGGCGAGCAAGTTGAGCC 61.435 66.667 21.70 21.70 46.51 4.70
692 891 3.793144 GGCGAGCAAGTTGAGCCG 61.793 66.667 17.50 12.51 38.28 5.52
693 892 3.793144 GCGAGCAAGTTGAGCCGG 61.793 66.667 7.16 0.00 0.00 6.13
694 893 2.048222 CGAGCAAGTTGAGCCGGA 60.048 61.111 5.05 0.00 0.00 5.14
695 894 2.383527 CGAGCAAGTTGAGCCGGAC 61.384 63.158 5.05 0.00 0.00 4.79
696 895 2.357517 AGCAAGTTGAGCCGGACG 60.358 61.111 5.05 0.00 0.00 4.79
697 896 3.423154 GCAAGTTGAGCCGGACGG 61.423 66.667 5.05 6.35 38.57 4.79
698 897 2.742372 CAAGTTGAGCCGGACGGG 60.742 66.667 5.05 3.74 39.58 5.28
699 898 4.016706 AAGTTGAGCCGGACGGGG 62.017 66.667 5.05 0.00 35.78 5.73
707 906 4.453892 CCGGACGGGGTAGGGACT 62.454 72.222 0.00 0.00 46.37 3.85
708 907 2.597340 CGGACGGGGTAGGGACTA 59.403 66.667 0.00 0.00 41.75 2.59
712 911 1.623686 ACGGGGTAGGGACTAGGGA 60.624 63.158 0.00 0.00 44.14 4.20
713 912 1.153292 CGGGGTAGGGACTAGGGAG 59.847 68.421 0.00 0.00 44.14 4.30
766 965 2.807599 CTTCCCCTTCCCCTTCCCCT 62.808 65.000 0.00 0.00 0.00 4.79
767 966 2.696504 CCCCTTCCCCTTCCCCTC 60.697 72.222 0.00 0.00 0.00 4.30
768 967 2.696504 CCCTTCCCCTTCCCCTCC 60.697 72.222 0.00 0.00 0.00 4.30
771 970 4.752594 TTCCCCTTCCCCTCCCCG 62.753 72.222 0.00 0.00 0.00 5.73
801 1012 1.647084 CTGTTTTATAGCCGCCGCC 59.353 57.895 0.00 0.00 34.57 6.13
853 1064 4.344474 CCGGCGCTCGATCTACCC 62.344 72.222 17.96 0.00 42.43 3.69
903 1115 4.523083 CCGGGACCATTTCTTCAGAATTA 58.477 43.478 0.00 0.00 33.54 1.40
942 1154 2.222819 CGCCGCAGAGTTTTACTGAATC 60.223 50.000 0.00 0.00 37.54 2.52
950 1162 4.999950 AGAGTTTTACTGAATCACCAGCAG 59.000 41.667 0.00 0.00 37.68 4.24
955 1167 1.085091 CTGAATCACCAGCAGCAGAC 58.915 55.000 0.00 0.00 0.00 3.51
957 1169 1.364626 GAATCACCAGCAGCAGACCG 61.365 60.000 0.00 0.00 0.00 4.79
1033 1245 2.184579 CCTCCTTCTTCGCGTCCC 59.815 66.667 5.77 0.00 0.00 4.46
1515 1754 1.265635 CTCGACATCGACCAGGATCTC 59.734 57.143 0.00 0.00 44.22 2.75
1531 1770 3.895041 GGATCTCTCCAGGGTAAGAAGAG 59.105 52.174 0.00 0.00 41.64 2.85
1542 1781 5.478679 CAGGGTAAGAAGAGAGAAGAACAGA 59.521 44.000 0.00 0.00 0.00 3.41
1627 1875 2.703536 TCCTGTTGTTGCTCCTTACTGA 59.296 45.455 0.00 0.00 0.00 3.41
1638 1886 6.090483 TGCTCCTTACTGATGAATACTAGC 57.910 41.667 0.00 0.00 0.00 3.42
1688 1938 4.184079 AGATCAATGTTTCAAGCTTGGC 57.816 40.909 25.73 16.15 0.00 4.52
1689 1939 3.575256 AGATCAATGTTTCAAGCTTGGCA 59.425 39.130 25.73 20.66 0.00 4.92
1690 1940 3.374220 TCAATGTTTCAAGCTTGGCAG 57.626 42.857 25.73 11.54 0.00 4.85
1691 1941 2.694628 TCAATGTTTCAAGCTTGGCAGT 59.305 40.909 25.73 17.54 0.00 4.40
1692 1942 3.888323 TCAATGTTTCAAGCTTGGCAGTA 59.112 39.130 25.73 9.76 0.00 2.74
1707 1957 6.984474 GCTTGGCAGTATAGTACAGTTTATGA 59.016 38.462 0.00 0.00 0.00 2.15
1711 1961 8.482943 TGGCAGTATAGTACAGTTTATGACATT 58.517 33.333 0.00 0.00 0.00 2.71
1724 1974 9.590451 CAGTTTATGACATTCCTGCAAATATTT 57.410 29.630 0.00 0.00 0.00 1.40
1736 1986 6.268847 TCCTGCAAATATTTGTTACCCAAACT 59.731 34.615 25.15 0.00 45.43 2.66
1737 1987 6.934083 CCTGCAAATATTTGTTACCCAAACTT 59.066 34.615 25.15 0.00 45.43 2.66
1738 1988 7.095271 CCTGCAAATATTTGTTACCCAAACTTG 60.095 37.037 25.15 6.17 45.43 3.16
1741 1994 3.762407 ATTTGTTACCCAAACTTGCCC 57.238 42.857 0.00 0.00 45.43 5.36
1743 1996 2.463047 TGTTACCCAAACTTGCCCTT 57.537 45.000 0.00 0.00 38.99 3.95
1748 2001 2.325484 ACCCAAACTTGCCCTTAAAGG 58.675 47.619 0.00 0.00 34.30 3.11
1765 2019 7.066284 CCCTTAAAGGCATCATATATTCGGAAG 59.934 40.741 0.00 0.00 32.73 3.46
1771 2025 4.490959 GCATCATATATTCGGAAGCGTTCG 60.491 45.833 0.00 0.00 0.00 3.95
1783 2037 2.563471 AGCGTTCGATCTGGAACTAC 57.437 50.000 10.53 4.47 43.20 2.73
1789 2043 3.717400 TCGATCTGGAACTACATGCTC 57.283 47.619 0.00 0.00 0.00 4.26
1808 2065 3.249559 GCTCAGGAAAATCTAGATTGCGG 59.750 47.826 18.61 5.18 0.00 5.69
1813 2070 4.646492 AGGAAAATCTAGATTGCGGCATTT 59.354 37.500 18.61 7.31 0.00 2.32
1814 2071 5.827797 AGGAAAATCTAGATTGCGGCATTTA 59.172 36.000 18.61 0.00 0.00 1.40
1831 2091 5.005299 GGCATTTATGTCAAATTTACGGTGC 59.995 40.000 0.00 0.00 31.41 5.01
1882 2145 5.122082 AGTTTGTGACAATGGCTTTTTGTTG 59.878 36.000 0.00 0.00 37.43 3.33
1884 2147 4.180057 TGTGACAATGGCTTTTTGTTGTC 58.820 39.130 9.46 9.46 46.47 3.18
1888 2152 4.583871 ACAATGGCTTTTTGTTGTCCAAA 58.416 34.783 0.00 0.00 41.25 3.28
2002 2266 3.073798 TGCTGACCAGAGGTAATTTCCAA 59.926 43.478 3.73 0.00 35.25 3.53
2003 2267 3.440522 GCTGACCAGAGGTAATTTCCAAC 59.559 47.826 3.73 0.00 35.25 3.77
2004 2268 4.651778 CTGACCAGAGGTAATTTCCAACA 58.348 43.478 3.73 0.00 35.25 3.33
2005 2269 5.255397 TGACCAGAGGTAATTTCCAACAT 57.745 39.130 3.73 0.00 35.25 2.71
2009 2273 7.893302 TGACCAGAGGTAATTTCCAACATAATT 59.107 33.333 3.73 0.00 35.25 1.40
2035 2299 9.859427 TTTAAGCAATCTTTCAGAAACATATGG 57.141 29.630 7.80 0.00 33.85 2.74
2050 2314 8.907885 AGAAACATATGGAATCTTAAAGAAGGC 58.092 33.333 7.80 0.00 33.09 4.35
2051 2315 8.829373 AAACATATGGAATCTTAAAGAAGGCT 57.171 30.769 7.80 0.00 33.09 4.58
2052 2316 7.814264 ACATATGGAATCTTAAAGAAGGCTG 57.186 36.000 7.80 0.00 33.09 4.85
2053 2317 6.264067 ACATATGGAATCTTAAAGAAGGCTGC 59.736 38.462 7.80 0.00 33.09 5.25
2054 2318 4.032960 TGGAATCTTAAAGAAGGCTGCA 57.967 40.909 0.50 0.00 33.09 4.41
2055 2319 4.406456 TGGAATCTTAAAGAAGGCTGCAA 58.594 39.130 0.50 0.00 33.09 4.08
2056 2320 4.460382 TGGAATCTTAAAGAAGGCTGCAAG 59.540 41.667 0.50 0.00 33.09 4.01
2057 2321 4.702131 GGAATCTTAAAGAAGGCTGCAAGA 59.298 41.667 0.50 0.09 33.75 3.02
2094 2361 8.078060 TGACTGACATGAGAAAATATGGACTA 57.922 34.615 0.00 0.00 0.00 2.59
2133 2404 4.695455 ACGTTCTGTTAACTCAATGGATGG 59.305 41.667 7.22 0.00 0.00 3.51
2137 2408 4.935205 TCTGTTAACTCAATGGATGGAACG 59.065 41.667 7.22 0.00 0.00 3.95
2199 2470 5.280164 CCATATGGAGCAGAGGCATAAACTA 60.280 44.000 17.49 0.00 44.61 2.24
2211 2482 3.198872 GCATAAACTAGGGCTGTCAGAC 58.801 50.000 3.32 0.00 0.00 3.51
2244 2515 0.458889 CCAATGCACGCCAATTCCTG 60.459 55.000 0.00 0.00 0.00 3.86
2310 2581 4.906065 TTGCTATGAATGAATGCCTCAC 57.094 40.909 0.00 0.00 36.69 3.51
2313 2584 4.891168 TGCTATGAATGAATGCCTCACAAT 59.109 37.500 0.00 0.00 36.69 2.71
2382 2654 7.439356 CCATATCGTGTAGTTTCTGATCATGTT 59.561 37.037 0.00 0.00 0.00 2.71
2383 2655 8.820933 CATATCGTGTAGTTTCTGATCATGTTT 58.179 33.333 0.00 0.00 0.00 2.83
2498 2770 3.118223 GGGAACTGAGATTGAGGGGTAAG 60.118 52.174 0.00 0.00 0.00 2.34
2613 2885 7.012327 GTGCTGTTAATCACTAATCCATAGCAA 59.988 37.037 0.00 0.00 34.78 3.91
2614 2886 7.012327 TGCTGTTAATCACTAATCCATAGCAAC 59.988 37.037 0.00 0.00 34.78 4.17
2669 2943 1.541169 TGGCCGCCCATGGAAATAT 59.459 52.632 15.22 0.00 35.79 1.28
2674 2948 2.030274 GCCGCCCATGGAAATATTGTAC 60.030 50.000 15.22 0.00 0.00 2.90
2699 2985 5.787380 AGCTCCAAAATCCAGAAACAATTC 58.213 37.500 0.00 0.00 35.70 2.17
2704 2990 6.054295 CCAAAATCCAGAAACAATTCACCAA 58.946 36.000 0.00 0.00 38.06 3.67
2706 2992 4.871933 ATCCAGAAACAATTCACCAACC 57.128 40.909 0.00 0.00 38.06 3.77
2741 3027 9.729023 CGATATCTGAGTATCTTATGGAACATC 57.271 37.037 0.34 0.00 39.07 3.06
2744 3030 7.531857 TCTGAGTATCTTATGGAACATCTCC 57.468 40.000 0.00 0.00 39.07 3.71
2877 3165 2.626840 GGTCATGCAGAGAAGGACTTC 58.373 52.381 3.91 3.91 39.78 3.01
2941 3229 1.067821 GTCGTCTGCTTGGGAGATAGG 59.932 57.143 0.00 0.00 0.00 2.57
2986 3274 1.902508 GGAGGATTCCTGTGACACTCA 59.097 52.381 10.74 0.00 40.58 3.41
3115 3403 7.387948 CAGGGTTTATTGTGTATATGCTAGACC 59.612 40.741 0.00 0.00 0.00 3.85
3138 3426 4.233789 GCGGTTCATTTTCTATGTTGCAA 58.766 39.130 0.00 0.00 0.00 4.08
3145 3433 8.375465 GTTCATTTTCTATGTTGCAATTGTAGC 58.625 33.333 0.59 5.30 0.00 3.58
3176 3464 5.010112 TGCTATGGACAGTAGATAAGTCTGC 59.990 44.000 0.00 0.00 37.35 4.26
3191 3479 2.554032 AGTCTGCATTCGGTTTTCTTGG 59.446 45.455 0.00 0.00 0.00 3.61
3196 3484 2.220824 GCATTCGGTTTTCTTGGTTTGC 59.779 45.455 0.00 0.00 0.00 3.68
3225 3513 2.862541 TGCTACAGGAAAGCACAACAT 58.137 42.857 0.00 0.00 44.78 2.71
3227 3515 4.393834 TGCTACAGGAAAGCACAACATTA 58.606 39.130 0.00 0.00 44.78 1.90
3233 3522 5.156355 CAGGAAAGCACAACATTACACATC 58.844 41.667 0.00 0.00 0.00 3.06
3249 3538 2.746904 CACATCGGTTTATGGAGTTGCA 59.253 45.455 0.00 0.00 0.00 4.08
3266 3555 0.804989 GCAAATTCTGGGTGGACTCG 59.195 55.000 0.00 0.00 0.00 4.18
3334 3623 4.497340 GCTTTGAGATCCGTGTTGTTTTCA 60.497 41.667 0.00 0.00 0.00 2.69
3336 3625 6.567701 GCTTTGAGATCCGTGTTGTTTTCATA 60.568 38.462 0.00 0.00 0.00 2.15
3364 3674 3.370104 TCTTGTTTGCTTTTTGGGGAGA 58.630 40.909 0.00 0.00 0.00 3.71
3377 3687 2.613482 GGGAGAGGGTGGGGGAAAC 61.613 68.421 0.00 0.00 0.00 2.78
3384 3694 4.390008 AGAGGGTGGGGGAAACTATTTAT 58.610 43.478 0.00 0.00 0.00 1.40
3385 3695 4.168088 AGAGGGTGGGGGAAACTATTTATG 59.832 45.833 0.00 0.00 0.00 1.90
3386 3696 2.963101 GGGTGGGGGAAACTATTTATGC 59.037 50.000 0.00 0.00 0.00 3.14
3387 3697 3.628769 GGGTGGGGGAAACTATTTATGCA 60.629 47.826 0.00 0.00 0.00 3.96
3388 3698 3.383505 GGTGGGGGAAACTATTTATGCAC 59.616 47.826 0.00 0.00 0.00 4.57
3389 3699 4.020543 GTGGGGGAAACTATTTATGCACA 58.979 43.478 0.00 0.00 0.00 4.57
3390 3700 4.649218 GTGGGGGAAACTATTTATGCACAT 59.351 41.667 0.00 0.00 0.00 3.21
3422 3733 4.969484 ACCTCCGTCTCAAAGTACAAAAT 58.031 39.130 0.00 0.00 0.00 1.82
3429 3740 5.505654 CGTCTCAAAGTACAAAATGTGCCTT 60.506 40.000 0.00 0.00 33.24 4.35
3432 3743 5.830912 TCAAAGTACAAAATGTGCCTTCAG 58.169 37.500 0.00 0.00 33.24 3.02
3439 3750 3.626028 AAATGTGCCTTCAGAAACGTC 57.374 42.857 0.00 0.00 0.00 4.34
3444 3755 5.142061 TGTGCCTTCAGAAACGTCTTATA 57.858 39.130 0.00 0.00 28.78 0.98
3449 3760 7.481798 GTGCCTTCAGAAACGTCTTATATTTTG 59.518 37.037 0.00 0.00 28.78 2.44
3452 3763 8.391106 CCTTCAGAAACGTCTTATATTTTGAGG 58.609 37.037 0.00 0.00 28.78 3.86
3453 3764 7.303634 TCAGAAACGTCTTATATTTTGAGGC 57.696 36.000 0.00 0.00 28.78 4.70
3478 3791 6.228995 GGAGGTAGTATTAAATAGTGGTGCC 58.771 44.000 0.00 0.00 0.00 5.01
3480 3793 7.202972 AGGTAGTATTAAATAGTGGTGCCAA 57.797 36.000 0.00 0.00 0.00 4.52
3481 3794 7.812306 AGGTAGTATTAAATAGTGGTGCCAAT 58.188 34.615 0.00 0.00 0.00 3.16
3482 3795 8.279361 AGGTAGTATTAAATAGTGGTGCCAATT 58.721 33.333 0.00 0.00 0.00 2.32
3485 3798 5.937975 ATTAAATAGTGGTGCCAATTGCT 57.062 34.783 0.00 0.00 42.00 3.91
3486 3799 3.598019 AAATAGTGGTGCCAATTGCTG 57.402 42.857 0.00 0.00 42.00 4.41
3487 3800 2.512692 ATAGTGGTGCCAATTGCTGA 57.487 45.000 0.00 0.00 42.00 4.26
3488 3801 2.284754 TAGTGGTGCCAATTGCTGAA 57.715 45.000 0.00 0.00 42.00 3.02
3489 3802 1.636148 AGTGGTGCCAATTGCTGAAT 58.364 45.000 0.00 0.00 42.00 2.57
3491 3804 0.527113 TGGTGCCAATTGCTGAATCG 59.473 50.000 0.00 0.00 42.00 3.34
3492 3805 0.527565 GGTGCCAATTGCTGAATCGT 59.472 50.000 0.00 0.00 42.00 3.73
3495 3808 0.171903 GCCAATTGCTGAATCGTGCT 59.828 50.000 0.00 0.00 36.87 4.40
3497 3810 2.159393 GCCAATTGCTGAATCGTGCTTA 60.159 45.455 0.00 0.00 36.87 3.09
3498 3811 3.489738 GCCAATTGCTGAATCGTGCTTAT 60.490 43.478 0.00 0.00 36.87 1.73
3500 3813 2.830772 TTGCTGAATCGTGCTTATGC 57.169 45.000 0.00 0.00 40.20 3.14
3503 3816 1.401552 GCTGAATCGTGCTTATGCCAA 59.598 47.619 0.00 0.00 38.71 4.52
3504 3817 2.792542 GCTGAATCGTGCTTATGCCAAC 60.793 50.000 0.00 0.00 38.71 3.77
3505 3818 1.396648 TGAATCGTGCTTATGCCAACG 59.603 47.619 7.03 7.03 39.12 4.10
3506 3819 1.663643 GAATCGTGCTTATGCCAACGA 59.336 47.619 15.37 15.37 46.38 3.85
3507 3820 1.732941 ATCGTGCTTATGCCAACGAA 58.267 45.000 16.50 4.90 45.79 3.85
3508 3821 1.514003 TCGTGCTTATGCCAACGAAA 58.486 45.000 12.00 0.00 42.07 3.46
3511 3824 1.919918 GTGCTTATGCCAACGAAATGC 59.080 47.619 0.00 0.00 38.71 3.56
3513 3826 3.013219 TGCTTATGCCAACGAAATGCTA 58.987 40.909 0.00 0.00 38.71 3.49
3516 3829 4.674101 GCTTATGCCAACGAAATGCTACAA 60.674 41.667 0.00 0.00 0.00 2.41
3517 3830 2.987413 TGCCAACGAAATGCTACAAG 57.013 45.000 0.00 0.00 0.00 3.16
3518 3831 1.068610 TGCCAACGAAATGCTACAAGC 60.069 47.619 0.00 0.00 42.82 4.01
3519 3832 1.882198 CCAACGAAATGCTACAAGCG 58.118 50.000 0.00 0.00 46.26 4.68
3520 3833 1.463056 CCAACGAAATGCTACAAGCGA 59.537 47.619 0.00 0.00 46.26 4.93
3521 3834 2.474526 CCAACGAAATGCTACAAGCGAG 60.475 50.000 0.00 0.00 46.26 5.03
3523 3836 1.993370 ACGAAATGCTACAAGCGAGTC 59.007 47.619 0.00 0.00 46.26 3.36
3524 3837 1.992667 CGAAATGCTACAAGCGAGTCA 59.007 47.619 0.00 0.00 46.26 3.41
3525 3838 2.222596 CGAAATGCTACAAGCGAGTCAC 60.223 50.000 0.00 0.00 46.26 3.67
3527 3840 2.680312 ATGCTACAAGCGAGTCACAT 57.320 45.000 0.00 0.00 46.26 3.21
3528 3841 2.455674 TGCTACAAGCGAGTCACATT 57.544 45.000 0.00 0.00 46.26 2.71
3529 3842 2.337583 TGCTACAAGCGAGTCACATTC 58.662 47.619 0.00 0.00 46.26 2.67
3531 3844 1.920574 CTACAAGCGAGTCACATTCCG 59.079 52.381 0.00 0.00 0.00 4.30
3532 3845 1.291877 ACAAGCGAGTCACATTCCGC 61.292 55.000 0.00 0.00 47.00 5.54
3534 3847 3.561429 GCGAGTCACATTCCGCAA 58.439 55.556 0.00 0.00 46.04 4.85
3535 3848 1.866237 GCGAGTCACATTCCGCAAA 59.134 52.632 0.00 0.00 46.04 3.68
3536 3849 0.452784 GCGAGTCACATTCCGCAAAC 60.453 55.000 0.00 0.00 46.04 2.93
3537 3850 0.865111 CGAGTCACATTCCGCAAACA 59.135 50.000 0.00 0.00 0.00 2.83
3538 3851 1.262950 CGAGTCACATTCCGCAAACAA 59.737 47.619 0.00 0.00 0.00 2.83
3540 3853 3.042887 GAGTCACATTCCGCAAACAAAC 58.957 45.455 0.00 0.00 0.00 2.93
3541 3854 1.778591 GTCACATTCCGCAAACAAACG 59.221 47.619 0.00 0.00 0.00 3.60
3595 4022 2.270352 TGTGCGACCATTTTTCCTCT 57.730 45.000 0.00 0.00 0.00 3.69
3605 4032 4.907269 ACCATTTTTCCTCTTTTCACCCAT 59.093 37.500 0.00 0.00 0.00 4.00
3620 4047 1.451927 CCATTTGAGGCCTAGCGCA 60.452 57.895 4.42 0.00 40.31 6.09
3740 4167 5.806502 TCATGAGCTAAAAATGAATTTGCGG 59.193 36.000 0.00 0.00 0.00 5.69
3829 4259 7.936496 TGCAATTGAGTGGACTAATTTATCA 57.064 32.000 10.34 0.00 0.00 2.15
3877 4307 0.453793 CTATCCTCCTATGCGAGCGG 59.546 60.000 0.00 0.00 0.00 5.52
3912 4342 4.430765 CTCCCGCGTACGTGGCTT 62.431 66.667 36.56 0.00 43.94 4.35
3913 4343 4.728102 TCCCGCGTACGTGGCTTG 62.728 66.667 36.56 25.05 43.94 4.01
3914 4344 4.728102 CCCGCGTACGTGGCTTGA 62.728 66.667 36.56 0.00 43.94 3.02
3915 4345 2.508439 CCGCGTACGTGGCTTGAT 60.508 61.111 32.68 0.00 39.06 2.57
3916 4346 2.098233 CCGCGTACGTGGCTTGATT 61.098 57.895 32.68 0.00 39.06 2.57
3917 4347 1.632046 CCGCGTACGTGGCTTGATTT 61.632 55.000 32.68 0.00 39.06 2.17
3918 4348 0.518355 CGCGTACGTGGCTTGATTTG 60.518 55.000 20.84 0.00 33.53 2.32
3919 4349 0.793861 GCGTACGTGGCTTGATTTGA 59.206 50.000 17.90 0.00 0.00 2.69
3920 4350 1.396996 GCGTACGTGGCTTGATTTGAT 59.603 47.619 17.90 0.00 0.00 2.57
3921 4351 2.159572 GCGTACGTGGCTTGATTTGATT 60.160 45.455 17.90 0.00 0.00 2.57
3922 4352 3.416277 CGTACGTGGCTTGATTTGATTG 58.584 45.455 7.22 0.00 0.00 2.67
3923 4353 3.727673 CGTACGTGGCTTGATTTGATTGG 60.728 47.826 7.22 0.00 0.00 3.16
3924 4354 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
3925 4355 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
3926 4356 3.244976 CGTGGCTTGATTTGATTGGAAC 58.755 45.455 0.00 0.00 0.00 3.62
3927 4357 3.305267 CGTGGCTTGATTTGATTGGAACA 60.305 43.478 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.012894 AGCAACATTTATGGCGCTAAATTAGTA 59.987 33.333 7.64 0.00 37.55 1.82
1 2 5.977129 GCAACATTTATGGCGCTAAATTAGT 59.023 36.000 7.64 3.59 30.68 2.24
2 3 6.208644 AGCAACATTTATGGCGCTAAATTAG 58.791 36.000 7.64 2.98 37.55 1.73
3 4 6.142818 AGCAACATTTATGGCGCTAAATTA 57.857 33.333 7.64 0.00 37.55 1.40
4 5 5.009854 AGCAACATTTATGGCGCTAAATT 57.990 34.783 7.64 0.00 37.55 1.82
5 6 4.654091 AGCAACATTTATGGCGCTAAAT 57.346 36.364 7.64 8.12 37.55 1.40
6 7 4.638421 AGTAGCAACATTTATGGCGCTAAA 59.362 37.500 7.64 5.76 40.72 1.85
7 8 4.196193 AGTAGCAACATTTATGGCGCTAA 58.804 39.130 7.64 0.00 40.72 3.09
8 9 3.804036 AGTAGCAACATTTATGGCGCTA 58.196 40.909 7.64 0.00 39.25 4.26
9 10 2.643551 AGTAGCAACATTTATGGCGCT 58.356 42.857 7.64 11.32 40.77 5.92
10 11 3.420839 AAGTAGCAACATTTATGGCGC 57.579 42.857 0.00 0.00 0.00 6.53
11 12 7.985634 ATAAAAAGTAGCAACATTTATGGCG 57.014 32.000 0.00 0.00 32.82 5.69
20 21 9.877178 TTTCAGGAAAAATAAAAAGTAGCAACA 57.123 25.926 0.00 0.00 0.00 3.33
23 24 9.040939 GCTTTTCAGGAAAAATAAAAAGTAGCA 57.959 29.630 8.39 0.00 39.49 3.49
24 25 9.261180 AGCTTTTCAGGAAAAATAAAAAGTAGC 57.739 29.630 8.39 4.66 39.49 3.58
27 28 9.448438 AACAGCTTTTCAGGAAAAATAAAAAGT 57.552 25.926 8.39 0.00 39.49 2.66
28 29 9.920826 GAACAGCTTTTCAGGAAAAATAAAAAG 57.079 29.630 7.74 0.00 39.49 2.27
29 30 9.442047 TGAACAGCTTTTCAGGAAAAATAAAAA 57.558 25.926 11.24 0.00 39.49 1.94
30 31 9.442047 TTGAACAGCTTTTCAGGAAAAATAAAA 57.558 25.926 14.55 0.00 39.49 1.52
31 32 9.442047 TTTGAACAGCTTTTCAGGAAAAATAAA 57.558 25.926 14.55 1.67 39.49 1.40
32 33 9.097257 CTTTGAACAGCTTTTCAGGAAAAATAA 57.903 29.630 14.55 4.15 39.49 1.40
33 34 8.257306 ACTTTGAACAGCTTTTCAGGAAAAATA 58.743 29.630 14.55 0.00 39.49 1.40
34 35 7.105588 ACTTTGAACAGCTTTTCAGGAAAAAT 58.894 30.769 14.55 0.00 39.49 1.82
35 36 6.463360 ACTTTGAACAGCTTTTCAGGAAAAA 58.537 32.000 14.55 6.05 39.49 1.94
36 37 6.036577 ACTTTGAACAGCTTTTCAGGAAAA 57.963 33.333 14.55 6.38 36.84 2.29
37 38 5.659440 ACTTTGAACAGCTTTTCAGGAAA 57.341 34.783 14.55 6.70 36.84 3.13
38 39 5.659440 AACTTTGAACAGCTTTTCAGGAA 57.341 34.783 14.55 7.34 36.84 3.36
39 40 5.659440 AAACTTTGAACAGCTTTTCAGGA 57.341 34.783 14.55 7.73 36.84 3.86
40 41 7.826260 TTAAAACTTTGAACAGCTTTTCAGG 57.174 32.000 14.55 13.55 36.84 3.86
41 42 9.745323 CTTTTAAAACTTTGAACAGCTTTTCAG 57.255 29.630 14.55 7.68 36.84 3.02
42 43 8.227119 GCTTTTAAAACTTTGAACAGCTTTTCA 58.773 29.630 11.24 11.24 33.55 2.69
43 44 8.443160 AGCTTTTAAAACTTTGAACAGCTTTTC 58.557 29.630 5.63 5.63 32.25 2.29
44 45 8.322906 AGCTTTTAAAACTTTGAACAGCTTTT 57.677 26.923 6.48 0.00 32.25 2.27
45 46 7.905604 AGCTTTTAAAACTTTGAACAGCTTT 57.094 28.000 6.48 0.00 32.25 3.51
46 47 7.602265 TCAAGCTTTTAAAACTTTGAACAGCTT 59.398 29.630 15.29 15.29 38.69 3.74
47 48 7.063426 GTCAAGCTTTTAAAACTTTGAACAGCT 59.937 33.333 17.45 6.48 34.74 4.24
48 49 7.063426 AGTCAAGCTTTTAAAACTTTGAACAGC 59.937 33.333 17.45 8.56 0.00 4.40
49 50 8.466086 AGTCAAGCTTTTAAAACTTTGAACAG 57.534 30.769 17.45 6.73 0.00 3.16
50 51 8.825667 AAGTCAAGCTTTTAAAACTTTGAACA 57.174 26.923 17.45 1.99 32.57 3.18
52 53 9.581099 CCTAAGTCAAGCTTTTAAAACTTTGAA 57.419 29.630 17.45 7.56 38.57 2.69
53 54 8.962679 TCCTAAGTCAAGCTTTTAAAACTTTGA 58.037 29.630 14.08 14.08 38.57 2.69
54 55 9.020813 GTCCTAAGTCAAGCTTTTAAAACTTTG 57.979 33.333 0.00 8.83 38.57 2.77
55 56 8.745590 TGTCCTAAGTCAAGCTTTTAAAACTTT 58.254 29.630 0.00 0.00 38.57 2.66
56 57 8.288689 TGTCCTAAGTCAAGCTTTTAAAACTT 57.711 30.769 0.00 4.86 38.57 2.66
57 58 7.875327 TGTCCTAAGTCAAGCTTTTAAAACT 57.125 32.000 0.00 0.00 38.57 2.66
58 59 8.920509 TTTGTCCTAAGTCAAGCTTTTAAAAC 57.079 30.769 0.00 0.00 38.57 2.43
59 60 9.581099 CTTTTGTCCTAAGTCAAGCTTTTAAAA 57.419 29.630 0.00 0.00 38.57 1.52
60 61 7.704899 GCTTTTGTCCTAAGTCAAGCTTTTAAA 59.295 33.333 0.00 0.00 38.57 1.52
61 62 7.068226 AGCTTTTGTCCTAAGTCAAGCTTTTAA 59.932 33.333 0.00 0.00 43.45 1.52
62 63 6.546034 AGCTTTTGTCCTAAGTCAAGCTTTTA 59.454 34.615 0.00 0.00 43.45 1.52
63 64 5.360999 AGCTTTTGTCCTAAGTCAAGCTTTT 59.639 36.000 0.00 0.00 43.45 2.27
64 65 4.889995 AGCTTTTGTCCTAAGTCAAGCTTT 59.110 37.500 0.00 0.00 43.45 3.51
65 66 4.464947 AGCTTTTGTCCTAAGTCAAGCTT 58.535 39.130 0.00 0.00 43.45 3.74
66 67 4.092116 AGCTTTTGTCCTAAGTCAAGCT 57.908 40.909 0.00 0.00 41.65 3.74
67 68 4.143094 CGTAGCTTTTGTCCTAAGTCAAGC 60.143 45.833 0.00 0.00 37.50 4.01
68 69 4.989168 ACGTAGCTTTTGTCCTAAGTCAAG 59.011 41.667 0.00 0.00 0.00 3.02
69 70 4.748102 CACGTAGCTTTTGTCCTAAGTCAA 59.252 41.667 0.00 0.00 0.00 3.18
70 71 4.202182 ACACGTAGCTTTTGTCCTAAGTCA 60.202 41.667 0.00 0.00 0.00 3.41
71 72 4.150098 CACACGTAGCTTTTGTCCTAAGTC 59.850 45.833 0.00 0.00 0.00 3.01
72 73 4.056050 CACACGTAGCTTTTGTCCTAAGT 58.944 43.478 0.00 0.00 0.00 2.24
73 74 3.120649 GCACACGTAGCTTTTGTCCTAAG 60.121 47.826 0.00 0.00 0.00 2.18
74 75 2.803956 GCACACGTAGCTTTTGTCCTAA 59.196 45.455 0.00 0.00 0.00 2.69
75 76 2.224090 TGCACACGTAGCTTTTGTCCTA 60.224 45.455 12.59 0.00 0.00 2.94
76 77 1.226746 GCACACGTAGCTTTTGTCCT 58.773 50.000 0.00 0.00 0.00 3.85
77 78 0.941542 TGCACACGTAGCTTTTGTCC 59.058 50.000 12.59 0.00 0.00 4.02
78 79 1.597663 AGTGCACACGTAGCTTTTGTC 59.402 47.619 21.04 0.00 36.20 3.18
79 80 1.663695 AGTGCACACGTAGCTTTTGT 58.336 45.000 21.04 0.00 36.20 2.83
80 81 2.223249 ACAAGTGCACACGTAGCTTTTG 60.223 45.455 21.04 13.29 36.20 2.44
81 82 2.014128 ACAAGTGCACACGTAGCTTTT 58.986 42.857 21.04 0.00 36.20 2.27
82 83 1.663695 ACAAGTGCACACGTAGCTTT 58.336 45.000 21.04 0.00 36.20 3.51
83 84 1.597663 GAACAAGTGCACACGTAGCTT 59.402 47.619 21.04 0.00 36.20 3.74
84 85 1.217882 GAACAAGTGCACACGTAGCT 58.782 50.000 21.04 0.16 36.20 3.32
85 86 0.111266 CGAACAAGTGCACACGTAGC 60.111 55.000 21.04 9.89 36.20 3.58
86 87 1.189446 GACGAACAAGTGCACACGTAG 59.811 52.381 21.04 14.33 36.20 3.51
87 88 1.202203 GACGAACAAGTGCACACGTA 58.798 50.000 21.04 0.00 36.20 3.57
88 89 1.748647 CGACGAACAAGTGCACACGT 61.749 55.000 21.04 19.98 36.20 4.49
89 90 1.084290 CGACGAACAAGTGCACACG 60.084 57.895 21.04 17.13 36.20 4.49
90 91 1.367665 GCGACGAACAAGTGCACAC 60.368 57.895 21.04 3.93 0.00 3.82
91 92 2.866010 CGCGACGAACAAGTGCACA 61.866 57.895 21.04 0.00 0.00 4.57
92 93 2.128128 CGCGACGAACAAGTGCAC 60.128 61.111 9.40 9.40 0.00 4.57
93 94 3.334751 CCGCGACGAACAAGTGCA 61.335 61.111 8.23 0.00 0.00 4.57
94 95 2.480426 CTTCCGCGACGAACAAGTGC 62.480 60.000 8.23 0.00 0.00 4.40
95 96 1.487231 CTTCCGCGACGAACAAGTG 59.513 57.895 8.23 0.00 0.00 3.16
96 97 1.663702 CCTTCCGCGACGAACAAGT 60.664 57.895 8.23 0.00 0.00 3.16
97 98 1.344942 CTCCTTCCGCGACGAACAAG 61.345 60.000 8.23 0.00 0.00 3.16
98 99 1.372499 CTCCTTCCGCGACGAACAA 60.372 57.895 8.23 0.00 0.00 2.83
99 100 2.257371 CTCCTTCCGCGACGAACA 59.743 61.111 8.23 0.00 0.00 3.18
100 101 2.506438 CCTCCTTCCGCGACGAAC 60.506 66.667 8.23 0.00 0.00 3.95
101 102 3.755628 CCCTCCTTCCGCGACGAA 61.756 66.667 8.23 1.97 0.00 3.85
102 103 4.728110 TCCCTCCTTCCGCGACGA 62.728 66.667 8.23 0.00 0.00 4.20
103 104 4.194720 CTCCCTCCTTCCGCGACG 62.195 72.222 8.23 0.00 0.00 5.12
104 105 3.069318 ACTCCCTCCTTCCGCGAC 61.069 66.667 8.23 0.00 0.00 5.19
105 106 3.068691 CACTCCCTCCTTCCGCGA 61.069 66.667 8.23 0.00 0.00 5.87
106 107 4.821589 GCACTCCCTCCTTCCGCG 62.822 72.222 0.00 0.00 0.00 6.46
107 108 3.706373 TGCACTCCCTCCTTCCGC 61.706 66.667 0.00 0.00 0.00 5.54
108 109 2.266055 GTGCACTCCCTCCTTCCG 59.734 66.667 10.32 0.00 0.00 4.30
109 110 1.003233 GTGTGCACTCCCTCCTTCC 60.003 63.158 19.41 0.00 0.00 3.46
110 111 0.321122 CAGTGTGCACTCCCTCCTTC 60.321 60.000 19.41 0.00 40.20 3.46
111 112 1.056700 ACAGTGTGCACTCCCTCCTT 61.057 55.000 19.41 0.00 40.20 3.36
112 113 1.460305 ACAGTGTGCACTCCCTCCT 60.460 57.895 19.41 1.42 40.20 3.69
113 114 1.302033 CACAGTGTGCACTCCCTCC 60.302 63.158 19.41 0.00 40.20 4.30
114 115 4.368391 CACAGTGTGCACTCCCTC 57.632 61.111 19.41 3.67 40.20 4.30
132 133 2.315925 TTCCAAAGCTGCTATCGGAG 57.684 50.000 0.90 0.00 0.00 4.63
133 134 2.779755 TTTCCAAAGCTGCTATCGGA 57.220 45.000 0.90 6.55 0.00 4.55
134 135 3.191371 AGTTTTTCCAAAGCTGCTATCGG 59.809 43.478 0.90 3.96 0.00 4.18
135 136 4.161333 CAGTTTTTCCAAAGCTGCTATCG 58.839 43.478 0.90 0.00 0.00 2.92
136 137 4.021981 ACCAGTTTTTCCAAAGCTGCTATC 60.022 41.667 0.90 0.00 0.00 2.08
137 138 3.897505 ACCAGTTTTTCCAAAGCTGCTAT 59.102 39.130 0.90 0.00 0.00 2.97
138 139 3.295973 ACCAGTTTTTCCAAAGCTGCTA 58.704 40.909 0.90 0.00 0.00 3.49
139 140 2.101415 GACCAGTTTTTCCAAAGCTGCT 59.899 45.455 0.00 0.00 0.00 4.24
140 141 2.159114 TGACCAGTTTTTCCAAAGCTGC 60.159 45.455 7.38 0.00 0.00 5.25
141 142 3.491447 CCTGACCAGTTTTTCCAAAGCTG 60.491 47.826 6.19 6.19 0.00 4.24
142 143 2.695147 CCTGACCAGTTTTTCCAAAGCT 59.305 45.455 0.00 0.00 0.00 3.74
143 144 2.224042 CCCTGACCAGTTTTTCCAAAGC 60.224 50.000 0.00 0.00 0.00 3.51
144 145 3.295973 TCCCTGACCAGTTTTTCCAAAG 58.704 45.455 0.00 0.00 0.00 2.77
145 146 3.390175 TCCCTGACCAGTTTTTCCAAA 57.610 42.857 0.00 0.00 0.00 3.28
146 147 3.390175 TTCCCTGACCAGTTTTTCCAA 57.610 42.857 0.00 0.00 0.00 3.53
147 148 3.390175 TTTCCCTGACCAGTTTTTCCA 57.610 42.857 0.00 0.00 0.00 3.53
148 149 4.746535 TTTTTCCCTGACCAGTTTTTCC 57.253 40.909 0.00 0.00 0.00 3.13
166 167 1.290732 ACCCCATCCGGATCCATTTTT 59.709 47.619 15.88 0.00 0.00 1.94
167 168 0.933700 ACCCCATCCGGATCCATTTT 59.066 50.000 15.88 0.00 0.00 1.82
168 169 0.185901 CACCCCATCCGGATCCATTT 59.814 55.000 15.88 0.00 0.00 2.32
169 170 0.993509 ACACCCCATCCGGATCCATT 60.994 55.000 15.88 0.00 0.00 3.16
170 171 0.993509 AACACCCCATCCGGATCCAT 60.994 55.000 15.88 0.00 0.00 3.41
171 172 1.618143 AACACCCCATCCGGATCCA 60.618 57.895 15.88 0.00 0.00 3.41
172 173 1.148498 GAACACCCCATCCGGATCC 59.852 63.158 15.88 0.00 0.00 3.36
173 174 1.148498 GGAACACCCCATCCGGATC 59.852 63.158 15.88 0.65 0.00 3.36
174 175 3.331293 GGAACACCCCATCCGGAT 58.669 61.111 12.38 12.38 0.00 4.18
183 184 1.228154 AGCGAAACTGGGAACACCC 60.228 57.895 0.00 0.00 43.73 4.61
184 185 1.949257 CAGCGAAACTGGGAACACC 59.051 57.895 0.00 0.00 43.19 4.16
193 194 2.665185 GTGACGGGCAGCGAAACT 60.665 61.111 0.00 0.00 0.00 2.66
207 208 5.476091 AGAAAACCAAACAACAAAGGTGA 57.524 34.783 0.00 0.00 33.93 4.02
214 215 4.201970 CGCCTTCTAGAAAACCAAACAACA 60.202 41.667 6.63 0.00 0.00 3.33
215 216 4.035909 TCGCCTTCTAGAAAACCAAACAAC 59.964 41.667 6.63 0.00 0.00 3.32
299 307 0.830444 TCACTGTCACGGCCTACCTT 60.830 55.000 0.00 0.00 0.00 3.50
303 311 1.110518 TGTGTCACTGTCACGGCCTA 61.111 55.000 0.00 0.00 38.48 3.93
304 312 2.421739 GTGTCACTGTCACGGCCT 59.578 61.111 0.00 0.00 0.00 5.19
305 313 2.108157 TGTGTCACTGTCACGGCC 59.892 61.111 4.27 0.00 38.48 6.13
306 314 1.520564 TGTGTGTCACTGTCACGGC 60.521 57.895 4.27 0.00 38.48 5.68
307 315 0.459411 TGTGTGTGTCACTGTCACGG 60.459 55.000 4.27 0.00 46.27 4.94
308 316 0.645355 GTGTGTGTGTCACTGTCACG 59.355 55.000 4.27 0.00 46.27 4.35
309 317 1.393539 GTGTGTGTGTGTCACTGTCAC 59.606 52.381 4.27 10.99 46.27 3.67
310 318 1.001406 TGTGTGTGTGTGTCACTGTCA 59.999 47.619 4.27 0.00 46.27 3.58
311 319 1.393539 GTGTGTGTGTGTGTCACTGTC 59.606 52.381 4.27 0.00 46.27 3.51
312 320 1.270571 TGTGTGTGTGTGTGTCACTGT 60.271 47.619 4.27 0.00 46.27 3.55
313 321 1.394572 CTGTGTGTGTGTGTGTCACTG 59.605 52.381 4.27 0.00 46.27 3.66
314 322 1.675714 CCTGTGTGTGTGTGTGTCACT 60.676 52.381 4.27 0.00 46.27 3.41
347 355 1.686052 GTGGAATTTCTTGTGGGCACA 59.314 47.619 0.00 0.00 39.98 4.57
348 356 1.686052 TGTGGAATTTCTTGTGGGCAC 59.314 47.619 0.00 0.00 0.00 5.01
349 357 2.079170 TGTGGAATTTCTTGTGGGCA 57.921 45.000 0.00 0.00 0.00 5.36
359 367 1.339929 GGGCGTGACTTTGTGGAATTT 59.660 47.619 0.00 0.00 0.00 1.82
365 373 3.240606 CTGCGGGCGTGACTTTGTG 62.241 63.158 0.00 0.00 0.00 3.33
413 421 7.228108 GCCATGATTGAAGATGAATAGACTGAA 59.772 37.037 0.00 0.00 0.00 3.02
414 422 6.709397 GCCATGATTGAAGATGAATAGACTGA 59.291 38.462 0.00 0.00 0.00 3.41
416 424 6.485984 GTGCCATGATTGAAGATGAATAGACT 59.514 38.462 0.00 0.00 0.00 3.24
417 425 6.565435 CGTGCCATGATTGAAGATGAATAGAC 60.565 42.308 0.00 0.00 0.00 2.59
418 426 5.467735 CGTGCCATGATTGAAGATGAATAGA 59.532 40.000 0.00 0.00 0.00 1.98
419 427 5.686834 CGTGCCATGATTGAAGATGAATAG 58.313 41.667 0.00 0.00 0.00 1.73
420 428 4.023792 GCGTGCCATGATTGAAGATGAATA 60.024 41.667 0.00 0.00 0.00 1.75
421 429 3.243301 GCGTGCCATGATTGAAGATGAAT 60.243 43.478 0.00 0.00 0.00 2.57
422 430 2.097954 GCGTGCCATGATTGAAGATGAA 59.902 45.455 0.00 0.00 0.00 2.57
423 431 1.672363 GCGTGCCATGATTGAAGATGA 59.328 47.619 0.00 0.00 0.00 2.92
424 432 1.674441 AGCGTGCCATGATTGAAGATG 59.326 47.619 0.00 0.00 0.00 2.90
425 433 1.945394 GAGCGTGCCATGATTGAAGAT 59.055 47.619 0.00 0.00 0.00 2.40
426 434 1.338960 TGAGCGTGCCATGATTGAAGA 60.339 47.619 0.00 0.00 0.00 2.87
427 435 1.089112 TGAGCGTGCCATGATTGAAG 58.911 50.000 0.00 0.00 0.00 3.02
428 436 1.402613 CATGAGCGTGCCATGATTGAA 59.597 47.619 14.31 0.00 42.89 2.69
429 437 1.018910 CATGAGCGTGCCATGATTGA 58.981 50.000 14.31 0.00 42.89 2.57
430 438 0.736636 ACATGAGCGTGCCATGATTG 59.263 50.000 21.86 5.63 42.89 2.67
431 439 1.019673 GACATGAGCGTGCCATGATT 58.980 50.000 21.86 7.72 42.89 2.57
432 440 0.107557 TGACATGAGCGTGCCATGAT 60.108 50.000 21.86 11.37 42.89 2.45
433 441 1.020861 GTGACATGAGCGTGCCATGA 61.021 55.000 21.86 5.81 42.89 3.07
434 442 1.426621 GTGACATGAGCGTGCCATG 59.573 57.895 16.57 16.57 45.03 3.66
435 443 2.102438 CGTGACATGAGCGTGCCAT 61.102 57.895 0.00 0.00 0.00 4.40
436 444 2.738139 CGTGACATGAGCGTGCCA 60.738 61.111 0.00 0.00 0.00 4.92
437 445 2.730672 GACGTGACATGAGCGTGCC 61.731 63.158 15.68 2.87 39.06 5.01
438 446 1.678269 GAGACGTGACATGAGCGTGC 61.678 60.000 15.68 9.31 39.06 5.34
443 451 1.821753 AGGAAGGAGACGTGACATGAG 59.178 52.381 0.00 0.00 0.00 2.90
458 466 8.035984 ACTCTATTACCTCGAAAAGAAAGGAAG 58.964 37.037 0.00 0.00 34.16 3.46
461 469 8.549338 AAACTCTATTACCTCGAAAAGAAAGG 57.451 34.615 0.00 0.00 36.21 3.11
468 476 9.947433 TGGAATAAAAACTCTATTACCTCGAAA 57.053 29.630 0.00 0.00 0.00 3.46
496 504 8.706322 TGCCTCATGACTGTAACTCTATATTA 57.294 34.615 0.00 0.00 0.00 0.98
497 505 7.507277 TCTGCCTCATGACTGTAACTCTATATT 59.493 37.037 0.00 0.00 0.00 1.28
499 507 6.365520 TCTGCCTCATGACTGTAACTCTATA 58.634 40.000 0.00 0.00 0.00 1.31
501 509 4.600062 TCTGCCTCATGACTGTAACTCTA 58.400 43.478 0.00 0.00 0.00 2.43
503 511 3.876274 TCTGCCTCATGACTGTAACTC 57.124 47.619 0.00 0.00 0.00 3.01
504 512 3.580458 ACTTCTGCCTCATGACTGTAACT 59.420 43.478 0.00 0.00 0.00 2.24
505 513 3.681897 CACTTCTGCCTCATGACTGTAAC 59.318 47.826 0.00 0.00 0.00 2.50
507 515 2.899900 ACACTTCTGCCTCATGACTGTA 59.100 45.455 0.00 0.00 0.00 2.74
509 517 2.469274 ACACTTCTGCCTCATGACTG 57.531 50.000 0.00 0.00 0.00 3.51
510 518 5.600069 TCATATACACTTCTGCCTCATGACT 59.400 40.000 0.00 0.00 0.00 3.41
511 519 5.847304 TCATATACACTTCTGCCTCATGAC 58.153 41.667 0.00 0.00 0.00 3.06
513 521 4.689812 GCTCATATACACTTCTGCCTCATG 59.310 45.833 0.00 0.00 0.00 3.07
514 522 4.560311 CGCTCATATACACTTCTGCCTCAT 60.560 45.833 0.00 0.00 0.00 2.90
515 523 3.243535 CGCTCATATACACTTCTGCCTCA 60.244 47.826 0.00 0.00 0.00 3.86
517 525 2.546795 GCGCTCATATACACTTCTGCCT 60.547 50.000 0.00 0.00 0.00 4.75
518 526 1.795286 GCGCTCATATACACTTCTGCC 59.205 52.381 0.00 0.00 0.00 4.85
519 527 2.748605 AGCGCTCATATACACTTCTGC 58.251 47.619 2.64 0.00 0.00 4.26
522 530 6.088749 CAGATACAAGCGCTCATATACACTTC 59.911 42.308 12.06 0.00 0.00 3.01
524 532 5.010112 ACAGATACAAGCGCTCATATACACT 59.990 40.000 12.06 2.76 0.00 3.55
525 533 5.223382 ACAGATACAAGCGCTCATATACAC 58.777 41.667 12.06 0.35 0.00 2.90
528 536 6.430000 TCAGTACAGATACAAGCGCTCATATA 59.570 38.462 12.06 0.81 33.30 0.86
530 538 4.578928 TCAGTACAGATACAAGCGCTCATA 59.421 41.667 12.06 6.73 33.30 2.15
532 540 2.752903 TCAGTACAGATACAAGCGCTCA 59.247 45.455 12.06 0.00 33.30 4.26
533 541 3.422417 TCAGTACAGATACAAGCGCTC 57.578 47.619 12.06 0.00 33.30 5.03
534 542 3.131223 ACATCAGTACAGATACAAGCGCT 59.869 43.478 2.64 2.64 33.30 5.92
535 543 3.448686 ACATCAGTACAGATACAAGCGC 58.551 45.455 0.00 0.00 33.30 5.92
536 544 7.520119 TTTAACATCAGTACAGATACAAGCG 57.480 36.000 0.00 0.00 33.30 4.68
561 569 7.928706 TGACCGTGGTTAAATCAAATCATTTTT 59.071 29.630 0.00 0.00 0.00 1.94
562 570 7.437748 TGACCGTGGTTAAATCAAATCATTTT 58.562 30.769 0.00 0.00 0.00 1.82
563 571 6.987386 TGACCGTGGTTAAATCAAATCATTT 58.013 32.000 0.00 0.00 0.00 2.32
565 573 6.152661 ACATGACCGTGGTTAAATCAAATCAT 59.847 34.615 0.00 0.00 0.00 2.45
566 574 5.475220 ACATGACCGTGGTTAAATCAAATCA 59.525 36.000 0.00 0.00 0.00 2.57
567 575 5.949735 ACATGACCGTGGTTAAATCAAATC 58.050 37.500 0.00 0.00 0.00 2.17
568 576 5.475220 TGACATGACCGTGGTTAAATCAAAT 59.525 36.000 0.00 0.00 0.00 2.32
569 577 4.822350 TGACATGACCGTGGTTAAATCAAA 59.178 37.500 0.00 0.00 0.00 2.69
571 579 3.749088 GTGACATGACCGTGGTTAAATCA 59.251 43.478 0.00 0.00 0.00 2.57
572 580 3.181524 CGTGACATGACCGTGGTTAAATC 60.182 47.826 0.00 0.00 0.00 2.17
573 581 2.739913 CGTGACATGACCGTGGTTAAAT 59.260 45.455 0.00 0.00 0.00 1.40
576 584 0.675083 ACGTGACATGACCGTGGTTA 59.325 50.000 0.00 0.00 32.86 2.85
577 585 0.599204 GACGTGACATGACCGTGGTT 60.599 55.000 13.95 0.00 34.51 3.67
578 586 1.006571 GACGTGACATGACCGTGGT 60.007 57.895 13.95 0.00 34.51 4.16
581 589 0.894184 AGGAGACGTGACATGACCGT 60.894 55.000 0.00 5.53 37.56 4.83
582 590 0.243907 AAGGAGACGTGACATGACCG 59.756 55.000 0.00 1.98 0.00 4.79
585 593 0.895530 GGGAAGGAGACGTGACATGA 59.104 55.000 0.00 0.00 0.00 3.07
604 800 1.078708 GGTGGTGATGGGTACGGTG 60.079 63.158 0.00 0.00 0.00 4.94
675 874 3.793144 CGGCTCAACTTGCTCGCC 61.793 66.667 6.53 6.53 37.40 5.54
682 881 4.016706 CCCCGTCCGGCTCAACTT 62.017 66.667 0.00 0.00 0.00 2.66
683 882 3.892104 TACCCCGTCCGGCTCAACT 62.892 63.158 0.00 0.00 0.00 3.16
685 884 3.072468 CTACCCCGTCCGGCTCAA 61.072 66.667 0.00 0.00 0.00 3.02
690 889 2.972892 CTAGTCCCTACCCCGTCCGG 62.973 70.000 0.00 0.00 0.00 5.14
691 890 1.527844 CTAGTCCCTACCCCGTCCG 60.528 68.421 0.00 0.00 0.00 4.79
692 891 1.152589 CCTAGTCCCTACCCCGTCC 60.153 68.421 0.00 0.00 0.00 4.79
693 892 1.152589 CCCTAGTCCCTACCCCGTC 60.153 68.421 0.00 0.00 0.00 4.79
694 893 1.623686 TCCCTAGTCCCTACCCCGT 60.624 63.158 0.00 0.00 0.00 5.28
695 894 1.153292 CTCCCTAGTCCCTACCCCG 59.847 68.421 0.00 0.00 0.00 5.73
696 895 1.547760 CCTCCCTAGTCCCTACCCC 59.452 68.421 0.00 0.00 0.00 4.95
697 896 1.547760 CCCTCCCTAGTCCCTACCC 59.452 68.421 0.00 0.00 0.00 3.69
698 897 1.547760 CCCCTCCCTAGTCCCTACC 59.452 68.421 0.00 0.00 0.00 3.18
699 898 1.547760 CCCCCTCCCTAGTCCCTAC 59.452 68.421 0.00 0.00 0.00 3.18
700 899 2.409937 GCCCCCTCCCTAGTCCCTA 61.410 68.421 0.00 0.00 0.00 3.53
701 900 3.780275 GCCCCCTCCCTAGTCCCT 61.780 72.222 0.00 0.00 0.00 4.20
702 901 3.653122 TTGCCCCCTCCCTAGTCCC 62.653 68.421 0.00 0.00 0.00 4.46
703 902 2.042261 TTGCCCCCTCCCTAGTCC 59.958 66.667 0.00 0.00 0.00 3.85
704 903 2.073101 CCTTGCCCCCTCCCTAGTC 61.073 68.421 0.00 0.00 0.00 2.59
705 904 2.042930 CCTTGCCCCCTCCCTAGT 59.957 66.667 0.00 0.00 0.00 2.57
706 905 3.493303 GCCTTGCCCCCTCCCTAG 61.493 72.222 0.00 0.00 0.00 3.02
707 906 3.901005 TTGCCTTGCCCCCTCCCTA 62.901 63.158 0.00 0.00 0.00 3.53
712 911 3.338250 TCGATTGCCTTGCCCCCT 61.338 61.111 0.00 0.00 0.00 4.79
713 912 3.140814 GTCGATTGCCTTGCCCCC 61.141 66.667 0.00 0.00 0.00 5.40
771 970 0.321298 TAAAACAGGAGCAGCGGACC 60.321 55.000 0.00 0.00 0.00 4.46
773 972 2.741878 GCTATAAAACAGGAGCAGCGGA 60.742 50.000 0.00 0.00 34.96 5.54
774 973 1.599542 GCTATAAAACAGGAGCAGCGG 59.400 52.381 0.00 0.00 34.96 5.52
775 974 1.599542 GGCTATAAAACAGGAGCAGCG 59.400 52.381 0.00 0.00 36.63 5.18
776 975 1.599542 CGGCTATAAAACAGGAGCAGC 59.400 52.381 0.00 0.00 36.63 5.25
779 990 0.945099 GGCGGCTATAAAACAGGAGC 59.055 55.000 0.00 0.00 0.00 4.70
916 1128 1.730064 GTAAAACTCTGCGGCGATTCA 59.270 47.619 12.98 0.00 0.00 2.57
930 1142 3.253188 TGCTGCTGGTGATTCAGTAAAAC 59.747 43.478 0.00 0.00 37.12 2.43
942 1154 3.947132 CTCCGGTCTGCTGCTGGTG 62.947 68.421 0.00 6.65 34.14 4.17
950 1162 2.725008 CCGAGATCTCCGGTCTGC 59.275 66.667 17.13 0.00 41.91 4.26
957 1169 2.420890 CAGCAGGCCGAGATCTCC 59.579 66.667 17.13 3.90 0.00 3.71
1017 1229 1.446272 GTGGGACGCGAAGAAGGAG 60.446 63.158 15.93 0.00 0.00 3.69
1033 1245 0.875059 GGCTTCTTCTTCCCGTTGTG 59.125 55.000 0.00 0.00 0.00 3.33
1066 1278 4.772687 GTCGAAGGGGTTCCGGGC 62.773 72.222 0.00 0.00 38.33 6.13
1515 1754 4.605183 TCTTCTCTCTTCTTACCCTGGAG 58.395 47.826 0.00 0.00 0.00 3.86
1531 1770 5.186797 TCCTCCTGAATTCTCTGTTCTTCTC 59.813 44.000 7.05 0.00 0.00 2.87
1542 1781 7.014808 GCAAGTAGTAGTATCCTCCTGAATTCT 59.985 40.741 7.05 0.00 0.00 2.40
1563 1802 5.889289 TGGTAAGGAAAAACAACTAGCAAGT 59.111 36.000 0.00 0.00 37.65 3.16
1564 1803 6.385649 TGGTAAGGAAAAACAACTAGCAAG 57.614 37.500 0.00 0.00 0.00 4.01
1565 1804 6.777213 TTGGTAAGGAAAAACAACTAGCAA 57.223 33.333 0.00 0.00 0.00 3.91
1627 1875 9.277783 CAAAATTAGGCTACTGCTAGTATTCAT 57.722 33.333 0.00 0.00 39.59 2.57
1638 1886 7.672983 TCAGAAGAACAAAATTAGGCTACTG 57.327 36.000 0.00 0.00 0.00 2.74
1690 1940 8.979574 GCAGGAATGTCATAAACTGTACTATAC 58.020 37.037 10.96 0.00 0.00 1.47
1691 1941 8.700973 TGCAGGAATGTCATAAACTGTACTATA 58.299 33.333 10.96 0.00 0.00 1.31
1692 1942 7.564793 TGCAGGAATGTCATAAACTGTACTAT 58.435 34.615 10.96 0.00 0.00 2.12
1707 1957 6.212388 TGGGTAACAAATATTTGCAGGAATGT 59.788 34.615 24.82 3.92 41.79 2.71
1711 1961 6.672266 TTTGGGTAACAAATATTTGCAGGA 57.328 33.333 24.82 7.74 43.81 3.86
1724 1974 2.463047 AAGGGCAAGTTTGGGTAACA 57.537 45.000 0.00 0.00 39.30 2.41
1741 1994 7.467623 GCTTCCGAATATATGATGCCTTTAAG 58.532 38.462 0.00 0.00 0.00 1.85
1743 1996 5.580691 CGCTTCCGAATATATGATGCCTTTA 59.419 40.000 0.00 0.00 36.29 1.85
1748 2001 4.490959 CGAACGCTTCCGAATATATGATGC 60.491 45.833 0.00 0.00 38.29 3.91
1760 2014 0.457853 TTCCAGATCGAACGCTTCCG 60.458 55.000 0.00 0.00 41.14 4.30
1765 2019 2.273370 TGTAGTTCCAGATCGAACGC 57.727 50.000 7.55 6.19 45.56 4.84
1771 2025 3.386078 TCCTGAGCATGTAGTTCCAGATC 59.614 47.826 0.00 0.00 0.00 2.75
1783 2037 5.560375 CGCAATCTAGATTTTCCTGAGCATG 60.560 44.000 15.49 2.04 0.00 4.06
1789 2043 2.945008 TGCCGCAATCTAGATTTTCCTG 59.055 45.455 15.49 6.14 0.00 3.86
1808 2065 5.005299 GGCACCGTAAATTTGACATAAATGC 59.995 40.000 0.00 0.52 0.00 3.56
1813 2070 3.597255 TCGGCACCGTAAATTTGACATA 58.403 40.909 9.23 0.00 40.74 2.29
1814 2071 2.428491 TCGGCACCGTAAATTTGACAT 58.572 42.857 9.23 0.00 40.74 3.06
1895 2159 2.361070 CCCCTAGTAGCTTTTCCCCCTA 60.361 54.545 0.00 0.00 0.00 3.53
1963 2227 1.601759 CATAGGGCCCCTGATTGCG 60.602 63.158 21.43 0.00 34.61 4.85
2009 2273 9.859427 CCATATGTTTCTGAAAGATTGCTTAAA 57.141 29.630 16.57 0.00 46.36 1.52
2014 2278 8.411683 AGATTCCATATGTTTCTGAAAGATTGC 58.588 33.333 16.57 0.08 46.36 3.56
2029 2293 6.263842 TGCAGCCTTCTTTAAGATTCCATATG 59.736 38.462 0.00 0.00 34.37 1.78
2030 2294 6.367983 TGCAGCCTTCTTTAAGATTCCATAT 58.632 36.000 0.00 0.00 34.37 1.78
2035 2299 5.392487 GGTCTTGCAGCCTTCTTTAAGATTC 60.392 44.000 0.00 0.00 34.37 2.52
2048 2312 1.174712 ACACATGTGGTCTTGCAGCC 61.175 55.000 28.64 0.00 34.19 4.85
2049 2313 0.239347 GACACATGTGGTCTTGCAGC 59.761 55.000 28.64 3.95 34.19 5.25
2050 2314 1.534163 CAGACACATGTGGTCTTGCAG 59.466 52.381 28.64 12.85 42.77 4.41
2051 2315 1.140652 TCAGACACATGTGGTCTTGCA 59.859 47.619 28.64 12.11 42.77 4.08
2052 2316 1.532868 GTCAGACACATGTGGTCTTGC 59.467 52.381 28.64 17.28 42.77 4.01
2053 2317 2.804527 CAGTCAGACACATGTGGTCTTG 59.195 50.000 28.64 19.27 42.77 3.02
2054 2318 2.700371 TCAGTCAGACACATGTGGTCTT 59.300 45.455 28.64 8.65 42.77 3.01
2055 2319 2.036475 GTCAGTCAGACACATGTGGTCT 59.964 50.000 28.64 23.16 46.77 3.85
2056 2320 2.408050 GTCAGTCAGACACATGTGGTC 58.592 52.381 28.64 21.53 46.77 4.02
2057 2321 2.533266 GTCAGTCAGACACATGTGGT 57.467 50.000 28.64 14.83 46.77 4.16
2109 2376 5.390885 CCATCCATTGAGTTAACAGAACGTG 60.391 44.000 8.61 0.00 0.00 4.49
2133 2404 2.554142 TCATCTGCATCCATGTCGTTC 58.446 47.619 0.00 0.00 0.00 3.95
2137 2408 3.752665 AGGAATCATCTGCATCCATGTC 58.247 45.455 4.66 0.00 34.30 3.06
2199 2470 2.997897 GGACGGTCTGACAGCCCT 60.998 66.667 10.38 0.00 0.00 5.19
2211 2482 3.768185 ATTGGATCGACGCGGACGG 62.768 63.158 22.77 5.08 46.04 4.79
2244 2515 0.741221 GCTCTGATGTGGGTTCGGAC 60.741 60.000 0.00 0.00 0.00 4.79
2304 2575 4.012374 TCCTGAGATGAAAATTGTGAGGC 58.988 43.478 0.00 0.00 0.00 4.70
2310 2581 7.027760 CAGATGTGTTCCTGAGATGAAAATTG 58.972 38.462 0.00 0.00 32.37 2.32
2313 2584 5.005740 CCAGATGTGTTCCTGAGATGAAAA 58.994 41.667 0.00 0.00 32.37 2.29
2357 2629 7.936950 ACATGATCAGAAACTACACGATATG 57.063 36.000 0.00 0.00 0.00 1.78
2390 2662 0.843309 TTTGCCTTCTCCACCTGACA 59.157 50.000 0.00 0.00 0.00 3.58
2532 2804 7.338710 AGAAGTGTTTATTAGGCTATGAGCAA 58.661 34.615 0.00 0.00 44.75 3.91
2636 2910 0.887933 GGCCATGGACGAAAATGTGT 59.112 50.000 18.40 0.00 0.00 3.72
2669 2943 5.755409 TCTGGATTTTGGAGCTAGTACAA 57.245 39.130 0.00 0.00 0.00 2.41
2674 2948 5.964958 TTGTTTCTGGATTTTGGAGCTAG 57.035 39.130 0.00 0.00 0.00 3.42
2741 3027 8.495949 CAACGGTGCTAAAATATAACTATGGAG 58.504 37.037 0.00 0.00 0.00 3.86
2877 3165 3.058016 TGACCCTGTAGTTAAGTTCGTCG 60.058 47.826 0.00 0.00 0.00 5.12
2941 3229 3.171277 GACAACAACATATGCTTTCCGC 58.829 45.455 1.58 0.00 39.77 5.54
3115 3403 2.845967 GCAACATAGAAAATGAACCGCG 59.154 45.455 0.00 0.00 0.00 6.46
3145 3433 6.932356 ATCTACTGTCCATAGCAAATTGTG 57.068 37.500 0.00 0.00 0.00 3.33
3176 3464 3.452474 TGCAAACCAAGAAAACCGAATG 58.548 40.909 0.00 0.00 0.00 2.67
3191 3479 5.118990 TCCTGTAGCATAGAGATTGCAAAC 58.881 41.667 1.71 0.00 42.62 2.93
3196 3484 5.363101 TGCTTTCCTGTAGCATAGAGATTG 58.637 41.667 0.00 0.00 43.30 2.67
3225 3513 4.393680 GCAACTCCATAAACCGATGTGTAA 59.606 41.667 0.00 0.00 0.00 2.41
3227 3515 2.747446 GCAACTCCATAAACCGATGTGT 59.253 45.455 0.00 0.00 0.00 3.72
3233 3522 4.858692 CAGAATTTGCAACTCCATAAACCG 59.141 41.667 0.00 0.00 0.00 4.44
3249 3538 1.358152 TCCGAGTCCACCCAGAATTT 58.642 50.000 0.00 0.00 0.00 1.82
3334 3623 9.218440 CCCAAAAAGCAAACAAGAATTACATAT 57.782 29.630 0.00 0.00 0.00 1.78
3336 3625 6.486320 CCCCAAAAAGCAAACAAGAATTACAT 59.514 34.615 0.00 0.00 0.00 2.29
3350 3639 0.178964 CACCCTCTCCCCAAAAAGCA 60.179 55.000 0.00 0.00 0.00 3.91
3351 3640 0.900182 CCACCCTCTCCCCAAAAAGC 60.900 60.000 0.00 0.00 0.00 3.51
3364 3674 3.373767 GCATAAATAGTTTCCCCCACCCT 60.374 47.826 0.00 0.00 0.00 4.34
3385 3695 0.652592 GAGGTCGTATGTGCATGTGC 59.347 55.000 0.00 0.00 42.50 4.57
3386 3696 1.290203 GGAGGTCGTATGTGCATGTG 58.710 55.000 0.00 0.00 0.00 3.21
3387 3697 0.179111 CGGAGGTCGTATGTGCATGT 60.179 55.000 0.00 0.00 0.00 3.21
3388 3698 2.593376 CGGAGGTCGTATGTGCATG 58.407 57.895 0.00 0.00 0.00 4.06
3399 3709 3.655276 TTGTACTTTGAGACGGAGGTC 57.345 47.619 0.00 0.00 43.76 3.85
3422 3733 2.325583 AAGACGTTTCTGAAGGCACA 57.674 45.000 0.00 0.00 29.98 4.57
3429 3740 6.035650 CGCCTCAAAATATAAGACGTTTCTGA 59.964 38.462 0.00 0.00 29.98 3.27
3432 3743 5.292589 TCCGCCTCAAAATATAAGACGTTTC 59.707 40.000 0.00 0.00 0.00 2.78
3439 3750 5.855045 ACTACCTCCGCCTCAAAATATAAG 58.145 41.667 0.00 0.00 0.00 1.73
3444 3755 4.772886 AATACTACCTCCGCCTCAAAAT 57.227 40.909 0.00 0.00 0.00 1.82
3449 3760 6.388278 CACTATTTAATACTACCTCCGCCTC 58.612 44.000 0.00 0.00 0.00 4.70
3452 3763 5.924825 CACCACTATTTAATACTACCTCCGC 59.075 44.000 0.00 0.00 0.00 5.54
3453 3764 5.924825 GCACCACTATTTAATACTACCTCCG 59.075 44.000 0.00 0.00 0.00 4.63
3478 3791 3.484649 GCATAAGCACGATTCAGCAATTG 59.515 43.478 0.00 0.00 41.58 2.32
3480 3793 2.033801 GGCATAAGCACGATTCAGCAAT 59.966 45.455 0.00 0.00 44.61 3.56
3481 3794 1.401552 GGCATAAGCACGATTCAGCAA 59.598 47.619 0.00 0.00 44.61 3.91
3482 3795 1.016627 GGCATAAGCACGATTCAGCA 58.983 50.000 0.00 0.00 44.61 4.41
3485 3798 1.396648 CGTTGGCATAAGCACGATTCA 59.603 47.619 2.64 0.00 41.16 2.57
3486 3799 1.663643 TCGTTGGCATAAGCACGATTC 59.336 47.619 7.23 0.00 42.08 2.52
3487 3800 1.732941 TCGTTGGCATAAGCACGATT 58.267 45.000 7.23 0.00 42.08 3.34
3488 3801 1.732941 TTCGTTGGCATAAGCACGAT 58.267 45.000 11.62 0.00 44.92 3.73
3489 3802 1.514003 TTTCGTTGGCATAAGCACGA 58.486 45.000 7.23 7.23 44.24 4.35
3491 3804 1.919918 GCATTTCGTTGGCATAAGCAC 59.080 47.619 0.00 0.00 44.61 4.40
3492 3805 1.818060 AGCATTTCGTTGGCATAAGCA 59.182 42.857 0.00 0.00 44.61 3.91
3495 3808 4.674101 GCTTGTAGCATTTCGTTGGCATAA 60.674 41.667 0.00 0.00 41.89 1.90
3497 3810 2.415893 GCTTGTAGCATTTCGTTGGCAT 60.416 45.455 0.00 0.00 41.89 4.40
3498 3811 1.068610 GCTTGTAGCATTTCGTTGGCA 60.069 47.619 0.00 0.00 41.89 4.92
3500 3813 1.463056 TCGCTTGTAGCATTTCGTTGG 59.537 47.619 0.00 0.00 42.58 3.77
3503 3816 1.993370 GACTCGCTTGTAGCATTTCGT 59.007 47.619 0.00 0.00 42.58 3.85
3504 3817 1.992667 TGACTCGCTTGTAGCATTTCG 59.007 47.619 0.00 0.00 42.58 3.46
3505 3818 2.736721 TGTGACTCGCTTGTAGCATTTC 59.263 45.455 0.00 0.00 42.58 2.17
3506 3819 2.766313 TGTGACTCGCTTGTAGCATTT 58.234 42.857 0.00 0.00 42.58 2.32
3507 3820 2.455674 TGTGACTCGCTTGTAGCATT 57.544 45.000 0.00 0.00 42.58 3.56
3508 3821 2.680312 ATGTGACTCGCTTGTAGCAT 57.320 45.000 0.00 0.00 42.58 3.79
3511 3824 1.920574 CGGAATGTGACTCGCTTGTAG 59.079 52.381 0.00 0.00 0.00 2.74
3513 3826 1.291877 GCGGAATGTGACTCGCTTGT 61.292 55.000 0.00 0.00 44.10 3.16
3518 3831 0.865111 TGTTTGCGGAATGTGACTCG 59.135 50.000 0.00 0.00 0.00 4.18
3519 3832 3.042887 GTTTGTTTGCGGAATGTGACTC 58.957 45.455 0.00 0.00 0.00 3.36
3520 3833 2.540769 CGTTTGTTTGCGGAATGTGACT 60.541 45.455 0.00 0.00 0.00 3.41
3521 3834 1.778591 CGTTTGTTTGCGGAATGTGAC 59.221 47.619 0.00 0.00 0.00 3.67
3523 3836 2.112475 TCGTTTGTTTGCGGAATGTG 57.888 45.000 0.00 0.00 0.00 3.21
3524 3837 2.853731 TTCGTTTGTTTGCGGAATGT 57.146 40.000 0.00 0.00 0.00 2.71
3525 3838 4.038725 CATTTCGTTTGTTTGCGGAATG 57.961 40.909 3.99 3.99 44.29 2.67
3527 3840 1.855360 GCATTTCGTTTGTTTGCGGAA 59.145 42.857 0.00 0.00 0.00 4.30
3528 3841 1.066303 AGCATTTCGTTTGTTTGCGGA 59.934 42.857 0.00 0.00 38.32 5.54
3529 3842 1.486439 AGCATTTCGTTTGTTTGCGG 58.514 45.000 0.00 0.00 38.32 5.69
3531 3844 4.606012 GCTTGTAGCATTTCGTTTGTTTGC 60.606 41.667 0.00 0.00 41.89 3.68
3532 3845 4.373914 CGCTTGTAGCATTTCGTTTGTTTG 60.374 41.667 0.00 0.00 42.58 2.93
3534 3847 3.002862 TCGCTTGTAGCATTTCGTTTGTT 59.997 39.130 0.00 0.00 42.58 2.83
3535 3848 2.546368 TCGCTTGTAGCATTTCGTTTGT 59.454 40.909 0.00 0.00 42.58 2.83
3536 3849 3.155998 CTCGCTTGTAGCATTTCGTTTG 58.844 45.455 0.00 0.00 42.58 2.93
3537 3850 2.806244 ACTCGCTTGTAGCATTTCGTTT 59.194 40.909 0.00 0.00 42.58 3.60
3538 3851 2.413837 ACTCGCTTGTAGCATTTCGTT 58.586 42.857 0.00 0.00 42.58 3.85
3540 3853 4.778842 AATACTCGCTTGTAGCATTTCG 57.221 40.909 0.00 0.00 42.58 3.46
3541 3854 6.684555 CAGAAAATACTCGCTTGTAGCATTTC 59.315 38.462 0.00 0.00 42.58 2.17
3581 4008 4.343814 TGGGTGAAAAGAGGAAAAATGGTC 59.656 41.667 0.00 0.00 0.00 4.02
3595 4022 2.397044 AGGCCTCAAATGGGTGAAAA 57.603 45.000 0.00 0.00 0.00 2.29
3605 4032 2.040544 GCTTGCGCTAGGCCTCAAA 61.041 57.895 20.21 0.00 42.61 2.69
3620 4047 4.535781 TGTGGTGCAGATTATTATGGCTT 58.464 39.130 0.00 0.00 0.00 4.35
3634 4061 0.953727 GACATTGCTTCTGTGGTGCA 59.046 50.000 0.00 0.00 34.69 4.57
3738 4165 4.457603 TCACCATTTCCACTTTATTGTCCG 59.542 41.667 0.00 0.00 0.00 4.79
3740 4167 7.382218 CACTTTCACCATTTCCACTTTATTGTC 59.618 37.037 0.00 0.00 0.00 3.18
3790 4220 7.542824 CACTCAATTGCATTGTCATTAATCACA 59.457 33.333 0.00 0.00 41.02 3.58
3847 4277 7.839705 TCGCATAGGAGGATAGGAAATTACTAT 59.160 37.037 0.00 0.00 34.00 2.12
3850 4280 6.282199 TCGCATAGGAGGATAGGAAATTAC 57.718 41.667 0.00 0.00 0.00 1.89
3852 4282 4.323104 GCTCGCATAGGAGGATAGGAAATT 60.323 45.833 0.00 0.00 34.56 1.82
3895 4325 4.430765 AAGCCACGTACGCGGGAG 62.431 66.667 25.61 2.82 45.97 4.30
3896 4326 4.728102 CAAGCCACGTACGCGGGA 62.728 66.667 25.61 0.00 45.97 5.14
3897 4327 4.728102 TCAAGCCACGTACGCGGG 62.728 66.667 22.89 20.94 43.45 6.13
3898 4328 1.632046 AAATCAAGCCACGTACGCGG 61.632 55.000 17.94 17.94 43.45 6.46
3899 4329 0.518355 CAAATCAAGCCACGTACGCG 60.518 55.000 16.72 3.53 44.93 6.01
3900 4330 0.793861 TCAAATCAAGCCACGTACGC 59.206 50.000 16.72 0.00 0.00 4.42
3901 4331 3.416277 CAATCAAATCAAGCCACGTACG 58.584 45.455 15.01 15.01 0.00 3.67
3902 4332 3.438781 TCCAATCAAATCAAGCCACGTAC 59.561 43.478 0.00 0.00 0.00 3.67
3903 4333 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
3904 4334 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
3905 4335 3.244976 GTTCCAATCAAATCAAGCCACG 58.755 45.455 0.00 0.00 0.00 4.94
3906 4336 4.255833 TGTTCCAATCAAATCAAGCCAC 57.744 40.909 0.00 0.00 0.00 5.01
3907 4337 4.952071 TTGTTCCAATCAAATCAAGCCA 57.048 36.364 0.00 0.00 0.00 4.75
3908 4338 6.806388 ATTTTGTTCCAATCAAATCAAGCC 57.194 33.333 0.00 0.00 35.25 4.35
3909 4339 8.445493 CCTTATTTTGTTCCAATCAAATCAAGC 58.555 33.333 0.00 0.00 35.25 4.01
3910 4340 8.445493 GCCTTATTTTGTTCCAATCAAATCAAG 58.555 33.333 0.00 0.00 35.25 3.02
3911 4341 7.935755 TGCCTTATTTTGTTCCAATCAAATCAA 59.064 29.630 0.00 0.00 35.25 2.57
3912 4342 7.387397 GTGCCTTATTTTGTTCCAATCAAATCA 59.613 33.333 0.00 0.00 35.25 2.57
3913 4343 7.411804 CGTGCCTTATTTTGTTCCAATCAAATC 60.412 37.037 0.00 0.00 35.25 2.17
3914 4344 6.368516 CGTGCCTTATTTTGTTCCAATCAAAT 59.631 34.615 0.00 0.00 35.25 2.32
3915 4345 5.694006 CGTGCCTTATTTTGTTCCAATCAAA 59.306 36.000 0.00 0.00 33.76 2.69
3916 4346 5.226396 CGTGCCTTATTTTGTTCCAATCAA 58.774 37.500 0.00 0.00 0.00 2.57
3917 4347 4.321601 CCGTGCCTTATTTTGTTCCAATCA 60.322 41.667 0.00 0.00 0.00 2.57
3918 4348 4.173256 CCGTGCCTTATTTTGTTCCAATC 58.827 43.478 0.00 0.00 0.00 2.67
3919 4349 4.186856 CCGTGCCTTATTTTGTTCCAAT 57.813 40.909 0.00 0.00 0.00 3.16
3920 4350 3.651803 CCGTGCCTTATTTTGTTCCAA 57.348 42.857 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.