Multiple sequence alignment - TraesCS4A01G431800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G431800 chr4A 100.000 2876 0 0 915 3790 702338725 702341600 0.000000e+00 5312
1 TraesCS4A01G431800 chr4A 90.221 951 85 4 917 1861 702503940 702504888 0.000000e+00 1234
2 TraesCS4A01G431800 chr4A 86.728 1085 114 6 1863 2922 702504923 702506002 0.000000e+00 1179
3 TraesCS4A01G431800 chr4A 100.000 629 0 0 1 629 702337811 702338439 0.000000e+00 1162
4 TraesCS4A01G431800 chr4A 85.320 1124 141 14 2080 3188 701312310 701311196 0.000000e+00 1140
5 TraesCS4A01G431800 chr4A 85.036 1116 155 9 2079 3186 702399332 702400443 0.000000e+00 1125
6 TraesCS4A01G431800 chr4A 82.042 1136 155 20 2076 3188 702381047 702382156 0.000000e+00 922
7 TraesCS4A01G431800 chr4A 91.038 636 49 6 1 629 702503265 702503899 0.000000e+00 852
8 TraesCS4A01G431800 chr4A 87.738 367 43 2 1 366 702383730 702384095 9.730000e-116 427
9 TraesCS4A01G431800 chr4A 84.086 421 58 9 1449 1863 701313074 701312657 7.630000e-107 398
10 TraesCS4A01G431800 chr4A 85.027 374 43 7 32 402 702378994 702379357 5.980000e-98 368
11 TraesCS4A01G431800 chr4A 89.434 265 26 2 184 447 701314422 701314159 2.180000e-87 333
12 TraesCS4A01G431800 chr4A 88.119 202 18 3 1863 2063 702380680 702380876 6.330000e-58 235
13 TraesCS4A01G431800 chr4A 86.111 216 25 3 4 217 702402244 702402456 1.060000e-55 228
14 TraesCS4A01G431800 chr4A 87.065 201 20 3 1869 2068 701312618 701312423 4.930000e-54 222
15 TraesCS4A01G431800 chr4A 88.000 175 20 1 1 174 701314923 701314749 4.960000e-49 206
16 TraesCS4A01G431800 chr4A 85.714 189 18 6 441 629 701314113 701313934 1.390000e-44 191
17 TraesCS4A01G431800 chr7D 85.714 1120 143 9 2080 3188 28696827 28697940 0.000000e+00 1166
18 TraesCS4A01G431800 chr7D 85.740 1115 133 14 2082 3188 28674868 28675964 0.000000e+00 1155
19 TraesCS4A01G431800 chr7D 88.667 450 47 4 1 447 28694605 28695053 2.570000e-151 545
20 TraesCS4A01G431800 chr7D 88.095 420 43 6 32 447 28672552 28672968 3.400000e-135 492
21 TraesCS4A01G431800 chr7D 82.979 235 35 5 3223 3453 28700633 28700866 1.380000e-49 207
22 TraesCS4A01G431800 chr7A 85.103 1121 139 13 2080 3188 29110573 29111677 0.000000e+00 1120
23 TraesCS4A01G431800 chr7A 86.082 776 107 1 2079 2853 29033262 29034037 0.000000e+00 833
24 TraesCS4A01G431800 chr7A 88.196 449 45 4 1 447 29108560 29109002 2.590000e-146 529
25 TraesCS4A01G431800 chr7A 85.588 451 50 9 1 447 29031256 29031695 3.450000e-125 459
26 TraesCS4A01G431800 chr7A 89.437 284 25 4 1 281 29034041 29034322 1.670000e-93 353
27 TraesCS4A01G431800 chr7A 86.387 191 19 4 441 629 29031741 29031926 6.420000e-48 202
28 TraesCS4A01G431800 chr7A 82.128 235 38 4 3223 3453 29148322 29148556 8.300000e-47 198
29 TraesCS4A01G431800 chr7A 83.750 160 14 7 471 629 29109097 29109245 1.420000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G431800 chr4A 702337811 702341600 3789 False 3237.000000 5312 100.000000 1 3790 2 chr4A.!!$F1 3789
1 TraesCS4A01G431800 chr4A 702503265 702506002 2737 False 1088.333333 1234 89.329000 1 2922 3 chr4A.!!$F4 2921
2 TraesCS4A01G431800 chr4A 702399332 702402456 3124 False 676.500000 1125 85.573500 4 3186 2 chr4A.!!$F3 3182
3 TraesCS4A01G431800 chr4A 702378994 702384095 5101 False 488.000000 922 85.731500 1 3188 4 chr4A.!!$F2 3187
4 TraesCS4A01G431800 chr4A 701311196 701314923 3727 True 415.000000 1140 86.603167 1 3188 6 chr4A.!!$R1 3187
5 TraesCS4A01G431800 chr7D 28672552 28675964 3412 False 823.500000 1155 86.917500 32 3188 2 chr7D.!!$F1 3156
6 TraesCS4A01G431800 chr7D 28694605 28700866 6261 False 639.333333 1166 85.786667 1 3453 3 chr7D.!!$F2 3452
7 TraesCS4A01G431800 chr7A 29108560 29111677 3117 False 596.666667 1120 85.683000 1 3188 3 chr7A.!!$F3 3187
8 TraesCS4A01G431800 chr7A 29031256 29034322 3066 False 461.750000 833 86.873500 1 2853 4 chr7A.!!$F2 2852

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1498 0.820226 CGGAAGAGGTGCAGATCTCA 59.180 55.0 12.37 0.0 30.79 3.27 F
2445 3295 0.107945 CCTCTGTTGGAGCAGTAGGC 60.108 60.0 0.00 0.0 40.57 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 3310 0.963856 AGACCGCACGACAGTATGGA 60.964 55.0 0.00 0.0 43.62 3.41 R
3468 7426 0.168128 AACGCGCTAACTGAAATGCC 59.832 50.0 5.73 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.657474 TCGGTTTTGGTAGTAGCATTCTAG 58.343 41.667 2.28 0.00 0.00 2.43
70 75 9.587772 TTTTCTAAAGAATAATCTCGTCCTCAG 57.412 33.333 0.00 0.00 33.77 3.35
89 94 6.273965 TCCTCAGTCATCCATGGATTCAATAT 59.726 38.462 25.20 0.00 31.62 1.28
139 144 4.701956 ATTTTACCACTGGCGAAATCAG 57.298 40.909 0.00 0.00 38.16 2.90
174 179 8.668353 GGAAGGAAATTTAGAAAAATGCAATCC 58.332 33.333 0.00 0.00 35.46 3.01
360 693 3.267483 CGTAGTGGGAAAGGTGGTTATG 58.733 50.000 0.00 0.00 0.00 1.90
410 787 0.895530 AGCCAAAATCCGTCGAGAGA 59.104 50.000 0.00 0.00 38.16 3.10
472 902 9.383354 AACTCCAGGTTGTTCCTTTATAGGACC 62.383 44.444 0.77 0.89 45.67 4.46
492 922 4.532834 ACCCTATTTCGGTAAATGTGCAT 58.467 39.130 0.00 0.00 36.02 3.96
514 966 5.176407 TCGGTCACCAACACAAAATTAAG 57.824 39.130 0.00 0.00 0.00 1.85
550 1008 3.824443 ACTTTTCTGAAAATACCCACCCG 59.176 43.478 15.30 4.18 0.00 5.28
567 1025 2.614013 GCCCCCTCCCTTCCTCAA 60.614 66.667 0.00 0.00 0.00 3.02
575 1033 4.451460 CCCCTCCCTTCCTCAATCTACTAT 60.451 50.000 0.00 0.00 0.00 2.12
935 1496 1.965754 GCCGGAAGAGGTGCAGATCT 61.966 60.000 5.05 0.00 0.00 2.75
937 1498 0.820226 CGGAAGAGGTGCAGATCTCA 59.180 55.000 12.37 0.00 30.79 3.27
961 1523 7.886970 TCACATGACAACCTACTACTAGTAAGT 59.113 37.037 3.76 7.07 39.91 2.24
1042 1604 7.655328 CCAGAGCTGAGGTATTATTTGTTCTAG 59.345 40.741 0.00 0.00 0.00 2.43
1065 1628 6.054295 AGCATCATACTCCACTGAATCTTTC 58.946 40.000 0.00 0.00 0.00 2.62
1129 1695 9.188588 GTTCACATATTTGATCTTATGCCATTG 57.811 33.333 0.00 0.00 30.50 2.82
1131 1697 8.789762 TCACATATTTGATCTTATGCCATTGAG 58.210 33.333 0.00 0.00 30.50 3.02
1147 1713 4.860907 CCATTGAGCAGCTAATTTTGTGAC 59.139 41.667 0.00 0.00 0.00 3.67
1163 1729 3.466836 TGTGACTAAGTGCTCAACCTTG 58.533 45.455 0.00 0.00 0.00 3.61
1202 1768 1.929836 CTCGCAATGCTCAAGGTCTAC 59.070 52.381 2.94 0.00 0.00 2.59
1203 1769 1.550524 TCGCAATGCTCAAGGTCTACT 59.449 47.619 2.94 0.00 0.00 2.57
1229 1795 8.710551 TCATGATTTTAATGTGTGTTGCAATTC 58.289 29.630 0.59 0.00 0.00 2.17
1271 1837 5.472137 TGTTTTACTACAGGGTGCAAGATTC 59.528 40.000 0.00 0.00 0.00 2.52
1354 1923 9.422681 TGCACTAAGGAACTATCTCTTAAGTAT 57.577 33.333 1.63 0.70 38.49 2.12
1397 1966 2.423926 ATGCAGCTATACCGAACGAG 57.576 50.000 0.00 0.00 0.00 4.18
1471 2043 7.122715 AGGGTGTGAATATATTTAGTTGGCAA 58.877 34.615 0.00 0.00 0.00 4.52
1492 2064 5.120674 GCAATTTGAGTTAATGAGGGCAAAC 59.879 40.000 0.00 0.00 0.00 2.93
1497 2069 4.764823 TGAGTTAATGAGGGCAAACGAATT 59.235 37.500 0.00 0.00 0.00 2.17
1509 2081 4.970003 GGCAAACGAATTGTATGTGCTATC 59.030 41.667 0.00 0.00 41.32 2.08
1556 2130 6.153510 GGCCTGTGATTCTTAAGAGGAAAAAT 59.846 38.462 5.12 0.00 0.00 1.82
1616 2193 6.272822 GAGAACTCCATATTGTTTTGCCTT 57.727 37.500 0.00 0.00 0.00 4.35
1621 2199 8.831715 AACTCCATATTGTTTTGCCTTAAAAG 57.168 30.769 0.00 0.00 38.85 2.27
1784 2366 3.376234 TGCTCATGAAACAATCTAGCTGC 59.624 43.478 0.00 0.00 33.16 5.25
1802 2385 8.040727 TCTAGCTGCAATACTACAGAAAATTGA 58.959 33.333 1.02 0.00 35.90 2.57
1830 2413 9.880157 ATTCATATTGCATAGCTTTGAAAAAGT 57.120 25.926 8.49 0.00 0.00 2.66
1940 2589 4.142116 TGCAGCAATATCACAGGAATTTGG 60.142 41.667 0.00 0.00 0.00 3.28
2068 2739 8.498358 GGATAAATTCTTCCACAAAAGCAAAAG 58.502 33.333 2.51 0.00 31.99 2.27
2069 2740 6.682423 AAATTCTTCCACAAAAGCAAAAGG 57.318 33.333 0.00 0.00 0.00 3.11
2107 2936 5.469579 TCCCAGCACTATATAAACCCTACA 58.530 41.667 0.00 0.00 0.00 2.74
2116 2945 8.168725 CACTATATAAACCCTACACTCCTCCTA 58.831 40.741 0.00 0.00 0.00 2.94
2134 2970 4.313362 TCCTACTCCTCTACACATAGGGA 58.687 47.826 0.00 0.00 29.10 4.20
2220 3058 3.181429 GGAAATTCCAGGGGCATCATCTA 60.181 47.826 7.23 0.00 36.28 1.98
2228 3066 1.735920 GGCATCATCTAGGCGCTCG 60.736 63.158 7.64 0.00 35.10 5.03
2249 3099 1.890979 GGCCATGTCATCAGCCTCG 60.891 63.158 13.92 0.00 42.34 4.63
2440 3290 1.242076 CCAAACCTCTGTTGGAGCAG 58.758 55.000 0.00 0.00 40.57 4.24
2445 3295 0.107945 CCTCTGTTGGAGCAGTAGGC 60.108 60.000 0.00 0.00 40.57 3.93
2480 3330 0.802222 CCATACTGTCGTGCGGTCTG 60.802 60.000 0.00 0.37 37.88 3.51
2495 3345 2.749044 CTGTGCCGCAGCTGGATT 60.749 61.111 17.12 0.00 38.52 3.01
2506 3356 0.921896 AGCTGGATTGGTAGTGGCAT 59.078 50.000 0.00 0.00 0.00 4.40
2529 3379 5.637809 TCGTCTACATGTACAAGTAAGCAG 58.362 41.667 11.73 2.91 0.00 4.24
2612 3466 3.059166 GCATGGCATGTTTCGTCTTTTT 58.941 40.909 26.94 0.00 0.00 1.94
2630 3484 2.936919 TTTGTGGCAGATGTGAGACT 57.063 45.000 0.00 0.00 0.00 3.24
2641 3495 5.163814 GCAGATGTGAGACTGGATTTTGTAC 60.164 44.000 0.00 0.00 35.05 2.90
2642 3496 5.352569 CAGATGTGAGACTGGATTTTGTACC 59.647 44.000 0.00 0.00 0.00 3.34
2643 3497 3.659786 TGTGAGACTGGATTTTGTACCG 58.340 45.455 0.00 0.00 0.00 4.02
2648 3502 5.221561 TGAGACTGGATTTTGTACCGAAGAA 60.222 40.000 0.00 0.00 0.00 2.52
2660 3514 0.249073 CCGAAGAATGTCTCGGCGAT 60.249 55.000 11.27 0.00 38.95 4.58
2693 3547 5.083533 AGCAATTGGAAAAACAGACACAA 57.916 34.783 7.72 0.00 0.00 3.33
2715 3569 0.472471 GGTGAGGTGGTGTGGAAGAA 59.528 55.000 0.00 0.00 0.00 2.52
2745 3602 3.091633 CACCAATGGAGGACAAGGAAT 57.908 47.619 6.16 0.00 33.79 3.01
2753 3610 2.632377 GAGGACAAGGAATGCGATCAA 58.368 47.619 0.00 0.00 0.00 2.57
2791 3648 2.187685 CGCTGGCAGCCTGTGATA 59.812 61.111 32.08 0.00 38.18 2.15
2827 3697 5.428253 TGTTTCAGAGACATATGGGCTTAC 58.572 41.667 7.80 1.08 0.00 2.34
2839 3709 6.330250 ACATATGGGCTTACAAGGACTAGAAT 59.670 38.462 7.80 0.00 0.00 2.40
2840 3710 7.512746 ACATATGGGCTTACAAGGACTAGAATA 59.487 37.037 7.80 0.00 0.00 1.75
2846 3716 9.438228 GGGCTTACAAGGACTAGAATATATTTC 57.562 37.037 0.00 0.00 0.00 2.17
2866 3736 6.554334 TTTCTCACAACTGTATAACTTGGC 57.446 37.500 0.00 0.00 0.00 4.52
2881 3751 4.904253 ACTTGGCGCTTTTGTAAGTAAA 57.096 36.364 7.64 0.00 33.74 2.01
2886 3756 6.079424 TGGCGCTTTTGTAAGTAAAAGAAT 57.921 33.333 7.64 0.00 45.86 2.40
2931 3804 0.433492 CTTTTGACGTGGTACGAGCG 59.567 55.000 8.48 0.00 46.05 5.03
2932 3805 1.550659 TTTTGACGTGGTACGAGCGC 61.551 55.000 8.48 0.00 46.05 5.92
2955 3828 5.503031 GCATCTCTTCATTCACATGTAACGG 60.503 44.000 0.00 0.00 0.00 4.44
2967 3840 0.464735 TGTAACGGGGCATGCATACC 60.465 55.000 21.36 16.82 0.00 2.73
3042 3915 6.752351 CACGTATAGATTGTCACAACTAGCTT 59.248 38.462 0.00 0.00 29.78 3.74
3046 3919 4.960938 AGATTGTCACAACTAGCTTGACA 58.039 39.130 12.98 12.98 46.11 3.58
3062 3935 4.092675 GCTTGACATGAAAGCTACTCTGTC 59.907 45.833 22.39 10.75 45.31 3.51
3065 3938 5.233225 TGACATGAAAGCTACTCTGTCTTG 58.767 41.667 15.92 6.45 39.11 3.02
3074 3947 5.542779 AGCTACTCTGTCTTGTACTTTTGG 58.457 41.667 0.00 0.00 0.00 3.28
3120 3996 4.006319 GGCTTGACAAGATCTGTTAGCTT 58.994 43.478 19.51 0.00 41.84 3.74
3126 4002 0.462759 AGATCTGTTAGCTTGCCCGC 60.463 55.000 0.00 0.00 0.00 6.13
3127 4003 0.462759 GATCTGTTAGCTTGCCCGCT 60.463 55.000 0.00 2.30 43.83 5.52
3146 4022 3.578688 GCTTCCAAGGTTTACATGCAAG 58.421 45.455 0.00 0.00 0.00 4.01
3166 4042 2.441532 ATGCATGGTCCCAGCTGC 60.442 61.111 8.66 5.19 35.21 5.25
3170 4046 0.752743 GCATGGTCCCAGCTGCATAA 60.753 55.000 8.66 0.00 34.77 1.90
3179 4056 2.159198 CCCAGCTGCATAAAACACATCC 60.159 50.000 8.66 0.00 0.00 3.51
3188 4065 7.536895 TGCATAAAACACATCCAAAATATGC 57.463 32.000 7.32 7.32 42.75 3.14
3190 4067 7.492020 TGCATAAAACACATCCAAAATATGCTC 59.508 33.333 13.54 0.00 42.83 4.26
3192 4069 4.637483 AACACATCCAAAATATGCTCGG 57.363 40.909 0.00 0.00 0.00 4.63
3193 4070 3.884895 ACACATCCAAAATATGCTCGGA 58.115 40.909 0.00 0.00 0.00 4.55
3194 4071 4.269183 ACACATCCAAAATATGCTCGGAA 58.731 39.130 0.00 0.00 0.00 4.30
3195 4072 4.096382 ACACATCCAAAATATGCTCGGAAC 59.904 41.667 0.00 0.00 0.00 3.62
3196 4073 3.632145 ACATCCAAAATATGCTCGGAACC 59.368 43.478 0.00 0.00 0.00 3.62
3198 4075 3.897239 TCCAAAATATGCTCGGAACCAT 58.103 40.909 0.00 0.00 0.00 3.55
3199 4076 3.631686 TCCAAAATATGCTCGGAACCATG 59.368 43.478 0.00 0.00 0.00 3.66
3200 4077 3.243501 CCAAAATATGCTCGGAACCATGG 60.244 47.826 11.19 11.19 0.00 3.66
3201 4078 3.297134 AAATATGCTCGGAACCATGGT 57.703 42.857 13.00 13.00 0.00 3.55
3202 4079 3.297134 AATATGCTCGGAACCATGGTT 57.703 42.857 30.23 30.23 41.54 3.67
3219 4313 5.221224 CCATGGTTCTAATGTGTGTGTGTTT 60.221 40.000 2.57 0.00 0.00 2.83
3221 4315 6.274157 TGGTTCTAATGTGTGTGTGTTTTT 57.726 33.333 0.00 0.00 0.00 1.94
3222 4316 6.096036 TGGTTCTAATGTGTGTGTGTTTTTG 58.904 36.000 0.00 0.00 0.00 2.44
3223 4317 6.096695 GGTTCTAATGTGTGTGTGTTTTTGT 58.903 36.000 0.00 0.00 0.00 2.83
3224 4318 6.034470 GGTTCTAATGTGTGTGTGTTTTTGTG 59.966 38.462 0.00 0.00 0.00 3.33
3225 4319 6.260870 TCTAATGTGTGTGTGTTTTTGTGT 57.739 33.333 0.00 0.00 0.00 3.72
3226 4320 6.089476 TCTAATGTGTGTGTGTTTTTGTGTG 58.911 36.000 0.00 0.00 0.00 3.82
3228 4322 4.046938 TGTGTGTGTGTTTTTGTGTGTT 57.953 36.364 0.00 0.00 0.00 3.32
3229 4323 3.798878 TGTGTGTGTGTTTTTGTGTGTTG 59.201 39.130 0.00 0.00 0.00 3.33
3230 4324 3.799420 GTGTGTGTGTTTTTGTGTGTTGT 59.201 39.130 0.00 0.00 0.00 3.32
3232 4326 5.116377 GTGTGTGTGTTTTTGTGTGTTGTAG 59.884 40.000 0.00 0.00 0.00 2.74
3233 4327 5.008712 TGTGTGTGTTTTTGTGTGTTGTAGA 59.991 36.000 0.00 0.00 0.00 2.59
3234 4328 5.915758 GTGTGTGTTTTTGTGTGTTGTAGAA 59.084 36.000 0.00 0.00 0.00 2.10
3235 4329 6.087555 GTGTGTGTTTTTGTGTGTTGTAGAAG 59.912 38.462 0.00 0.00 0.00 2.85
3236 4330 5.060446 GTGTGTTTTTGTGTGTTGTAGAAGC 59.940 40.000 0.00 0.00 0.00 3.86
3265 7219 5.649782 ACAGGATTTGTCTTTTGCCATAG 57.350 39.130 0.00 0.00 33.87 2.23
3276 7230 3.380471 TTTGCCATAGGGTATGTGCTT 57.620 42.857 0.00 0.00 35.09 3.91
3278 7232 2.930950 TGCCATAGGGTATGTGCTTTC 58.069 47.619 0.00 0.00 35.09 2.62
3279 7233 2.240921 TGCCATAGGGTATGTGCTTTCA 59.759 45.455 0.00 0.00 35.09 2.69
3280 7234 2.618709 GCCATAGGGTATGTGCTTTCAC 59.381 50.000 0.00 0.00 39.01 3.18
3289 7243 2.623878 TGTGCTTTCACGGGTTAGAA 57.376 45.000 0.00 0.00 46.01 2.10
3291 7245 3.482436 TGTGCTTTCACGGGTTAGAAAT 58.518 40.909 0.00 0.00 46.01 2.17
3293 7247 5.064558 TGTGCTTTCACGGGTTAGAAATTA 58.935 37.500 0.00 0.00 46.01 1.40
3294 7248 5.531659 TGTGCTTTCACGGGTTAGAAATTAA 59.468 36.000 0.00 0.00 46.01 1.40
3295 7249 5.854866 GTGCTTTCACGGGTTAGAAATTAAC 59.145 40.000 0.00 0.00 33.69 2.01
3306 7260 7.015974 CGGGTTAGAAATTAACTACCCTCCTAT 59.984 40.741 13.68 0.00 33.38 2.57
3321 7275 6.941915 ACCCTCCTATTAACAATCCCTAGTA 58.058 40.000 0.00 0.00 0.00 1.82
3417 7375 7.599998 CCCAAGGAAAGAAACACTATCAAATTG 59.400 37.037 0.00 0.00 0.00 2.32
3453 7411 3.963428 TGAAGAAGTAGAGAAGGGTGC 57.037 47.619 0.00 0.00 0.00 5.01
3454 7412 2.231478 TGAAGAAGTAGAGAAGGGTGCG 59.769 50.000 0.00 0.00 0.00 5.34
3455 7413 2.217510 AGAAGTAGAGAAGGGTGCGA 57.782 50.000 0.00 0.00 0.00 5.10
3456 7414 2.526432 AGAAGTAGAGAAGGGTGCGAA 58.474 47.619 0.00 0.00 0.00 4.70
3457 7415 3.100671 AGAAGTAGAGAAGGGTGCGAAT 58.899 45.455 0.00 0.00 0.00 3.34
3458 7416 4.279145 AGAAGTAGAGAAGGGTGCGAATA 58.721 43.478 0.00 0.00 0.00 1.75
3459 7417 4.896482 AGAAGTAGAGAAGGGTGCGAATAT 59.104 41.667 0.00 0.00 0.00 1.28
3460 7418 6.069331 AGAAGTAGAGAAGGGTGCGAATATA 58.931 40.000 0.00 0.00 0.00 0.86
3461 7419 6.722129 AGAAGTAGAGAAGGGTGCGAATATAT 59.278 38.462 0.00 0.00 0.00 0.86
3462 7420 6.919775 AGTAGAGAAGGGTGCGAATATATT 57.080 37.500 0.00 0.00 0.00 1.28
3463 7421 7.304497 AGTAGAGAAGGGTGCGAATATATTT 57.696 36.000 0.00 0.00 0.00 1.40
3464 7422 8.418597 AGTAGAGAAGGGTGCGAATATATTTA 57.581 34.615 0.00 0.00 0.00 1.40
3465 7423 8.524487 AGTAGAGAAGGGTGCGAATATATTTAG 58.476 37.037 0.00 0.00 0.00 1.85
3466 7424 7.304497 AGAGAAGGGTGCGAATATATTTAGT 57.696 36.000 0.00 0.00 0.00 2.24
3467 7425 8.418597 AGAGAAGGGTGCGAATATATTTAGTA 57.581 34.615 0.00 0.00 0.00 1.82
3468 7426 8.524487 AGAGAAGGGTGCGAATATATTTAGTAG 58.476 37.037 0.00 0.00 0.00 2.57
3469 7427 7.612677 AGAAGGGTGCGAATATATTTAGTAGG 58.387 38.462 0.00 0.00 0.00 3.18
3470 7428 5.731591 AGGGTGCGAATATATTTAGTAGGC 58.268 41.667 0.00 0.00 0.00 3.93
3471 7429 5.247564 AGGGTGCGAATATATTTAGTAGGCA 59.752 40.000 0.00 1.25 0.00 4.75
3472 7430 6.070194 AGGGTGCGAATATATTTAGTAGGCAT 60.070 38.462 0.00 0.00 0.00 4.40
3473 7431 6.598064 GGGTGCGAATATATTTAGTAGGCATT 59.402 38.462 0.00 0.00 0.00 3.56
3474 7432 7.120726 GGGTGCGAATATATTTAGTAGGCATTT 59.879 37.037 0.00 0.00 0.00 2.32
3475 7433 8.175716 GGTGCGAATATATTTAGTAGGCATTTC 58.824 37.037 0.00 0.00 0.00 2.17
3476 7434 8.717821 GTGCGAATATATTTAGTAGGCATTTCA 58.282 33.333 0.00 0.00 0.00 2.69
3477 7435 8.935844 TGCGAATATATTTAGTAGGCATTTCAG 58.064 33.333 0.00 0.00 0.00 3.02
3478 7436 8.936864 GCGAATATATTTAGTAGGCATTTCAGT 58.063 33.333 0.00 0.00 0.00 3.41
3483 7441 6.604735 ATTTAGTAGGCATTTCAGTTAGCG 57.395 37.500 0.00 0.00 0.00 4.26
3484 7442 2.280628 AGTAGGCATTTCAGTTAGCGC 58.719 47.619 0.00 0.00 0.00 5.92
3485 7443 1.004927 GTAGGCATTTCAGTTAGCGCG 60.005 52.381 0.00 0.00 0.00 6.86
3486 7444 0.673644 AGGCATTTCAGTTAGCGCGT 60.674 50.000 8.43 0.00 0.00 6.01
3487 7445 0.168128 GGCATTTCAGTTAGCGCGTT 59.832 50.000 8.43 3.54 0.00 4.84
3488 7446 1.395608 GGCATTTCAGTTAGCGCGTTA 59.604 47.619 8.43 2.16 0.00 3.18
3489 7447 2.159626 GGCATTTCAGTTAGCGCGTTAA 60.160 45.455 11.60 11.60 0.00 2.01
3490 7448 3.486875 GGCATTTCAGTTAGCGCGTTAAT 60.487 43.478 18.42 5.41 0.00 1.40
3491 7449 3.478516 GCATTTCAGTTAGCGCGTTAATG 59.521 43.478 18.42 15.94 0.00 1.90
3492 7450 4.726591 GCATTTCAGTTAGCGCGTTAATGA 60.727 41.667 18.42 17.65 0.00 2.57
3493 7451 4.994220 TTTCAGTTAGCGCGTTAATGAA 57.006 36.364 23.05 23.05 0.00 2.57
3494 7452 3.984018 TCAGTTAGCGCGTTAATGAAC 57.016 42.857 18.42 8.37 0.00 3.18
3495 7453 3.318886 TCAGTTAGCGCGTTAATGAACA 58.681 40.909 18.42 0.00 35.06 3.18
3496 7454 3.741856 TCAGTTAGCGCGTTAATGAACAA 59.258 39.130 18.42 0.00 35.06 2.83
3497 7455 4.390603 TCAGTTAGCGCGTTAATGAACAAT 59.609 37.500 18.42 0.00 35.06 2.71
3498 7456 5.577554 TCAGTTAGCGCGTTAATGAACAATA 59.422 36.000 18.42 0.00 35.06 1.90
3499 7457 6.256975 TCAGTTAGCGCGTTAATGAACAATAT 59.743 34.615 18.42 0.00 35.06 1.28
3500 7458 6.354362 CAGTTAGCGCGTTAATGAACAATATG 59.646 38.462 18.42 0.00 35.06 1.78
3501 7459 4.875544 AGCGCGTTAATGAACAATATGT 57.124 36.364 8.43 0.00 35.06 2.29
3502 7460 4.587306 AGCGCGTTAATGAACAATATGTG 58.413 39.130 8.43 0.00 35.06 3.21
3503 7461 3.177643 GCGCGTTAATGAACAATATGTGC 59.822 43.478 8.43 0.00 35.06 4.57
3504 7462 3.723764 CGCGTTAATGAACAATATGTGCC 59.276 43.478 0.00 0.00 35.06 5.01
3505 7463 4.667262 GCGTTAATGAACAATATGTGCCA 58.333 39.130 0.00 0.00 35.06 4.92
3506 7464 5.280945 GCGTTAATGAACAATATGTGCCAT 58.719 37.500 0.00 0.00 35.06 4.40
3507 7465 5.173673 GCGTTAATGAACAATATGTGCCATG 59.826 40.000 0.00 0.00 35.06 3.66
3508 7466 5.686841 CGTTAATGAACAATATGTGCCATGG 59.313 40.000 7.63 7.63 35.06 3.66
3509 7467 4.675976 AATGAACAATATGTGCCATGGG 57.324 40.909 15.13 0.00 29.19 4.00
3510 7468 3.378861 TGAACAATATGTGCCATGGGA 57.621 42.857 15.13 8.24 0.00 4.37
3511 7469 3.289836 TGAACAATATGTGCCATGGGAG 58.710 45.455 15.13 0.00 0.00 4.30
3512 7470 1.696063 ACAATATGTGCCATGGGAGC 58.304 50.000 15.13 6.38 0.00 4.70
3513 7471 0.594602 CAATATGTGCCATGGGAGCG 59.405 55.000 15.13 0.00 0.00 5.03
3514 7472 0.538057 AATATGTGCCATGGGAGCGG 60.538 55.000 15.13 0.00 0.00 5.52
3515 7473 1.418097 ATATGTGCCATGGGAGCGGA 61.418 55.000 15.13 0.00 0.00 5.54
3516 7474 1.631071 TATGTGCCATGGGAGCGGAA 61.631 55.000 15.13 0.00 0.00 4.30
3517 7475 2.825836 GTGCCATGGGAGCGGAAG 60.826 66.667 15.13 0.00 0.00 3.46
3518 7476 4.113815 TGCCATGGGAGCGGAAGG 62.114 66.667 15.13 0.00 0.00 3.46
3519 7477 3.797353 GCCATGGGAGCGGAAGGA 61.797 66.667 15.13 0.00 0.00 3.36
3520 7478 2.190578 CCATGGGAGCGGAAGGAC 59.809 66.667 2.85 0.00 0.00 3.85
3521 7479 2.190578 CATGGGAGCGGAAGGACC 59.809 66.667 0.00 0.00 0.00 4.46
3522 7480 2.285368 ATGGGAGCGGAAGGACCA 60.285 61.111 0.00 0.00 38.90 4.02
3523 7481 1.923395 ATGGGAGCGGAAGGACCAA 60.923 57.895 0.00 0.00 38.90 3.67
3524 7482 1.497309 ATGGGAGCGGAAGGACCAAA 61.497 55.000 0.00 0.00 38.90 3.28
3525 7483 1.074248 GGGAGCGGAAGGACCAAAA 59.926 57.895 0.00 0.00 38.90 2.44
3526 7484 0.538746 GGGAGCGGAAGGACCAAAAA 60.539 55.000 0.00 0.00 38.90 1.94
3527 7485 1.545841 GGAGCGGAAGGACCAAAAAT 58.454 50.000 0.00 0.00 38.90 1.82
3528 7486 1.893137 GGAGCGGAAGGACCAAAAATT 59.107 47.619 0.00 0.00 38.90 1.82
3529 7487 2.352715 GGAGCGGAAGGACCAAAAATTG 60.353 50.000 0.00 0.00 38.90 2.32
3530 7488 2.296190 GAGCGGAAGGACCAAAAATTGT 59.704 45.455 0.00 0.00 38.90 2.71
3531 7489 2.296190 AGCGGAAGGACCAAAAATTGTC 59.704 45.455 0.00 0.00 38.90 3.18
3532 7490 2.296190 GCGGAAGGACCAAAAATTGTCT 59.704 45.455 0.00 0.00 38.90 3.41
3533 7491 3.504520 GCGGAAGGACCAAAAATTGTCTA 59.495 43.478 0.00 0.00 38.90 2.59
3534 7492 4.379499 GCGGAAGGACCAAAAATTGTCTAG 60.379 45.833 0.00 0.00 38.90 2.43
3535 7493 4.760204 CGGAAGGACCAAAAATTGTCTAGT 59.240 41.667 0.00 0.00 38.90 2.57
3536 7494 5.334879 CGGAAGGACCAAAAATTGTCTAGTG 60.335 44.000 0.00 0.00 38.90 2.74
3537 7495 5.768164 GGAAGGACCAAAAATTGTCTAGTGA 59.232 40.000 0.00 0.00 38.79 3.41
3538 7496 6.434340 GGAAGGACCAAAAATTGTCTAGTGAT 59.566 38.462 0.00 0.00 38.79 3.06
3539 7497 6.824305 AGGACCAAAAATTGTCTAGTGATG 57.176 37.500 0.00 0.00 0.00 3.07
3540 7498 6.306987 AGGACCAAAAATTGTCTAGTGATGT 58.693 36.000 0.00 0.00 0.00 3.06
3541 7499 7.458397 AGGACCAAAAATTGTCTAGTGATGTA 58.542 34.615 0.00 0.00 0.00 2.29
3542 7500 8.109634 AGGACCAAAAATTGTCTAGTGATGTAT 58.890 33.333 0.00 0.00 0.00 2.29
3543 7501 9.391006 GGACCAAAAATTGTCTAGTGATGTATA 57.609 33.333 0.00 0.00 0.00 1.47
3553 7511 9.908152 TTGTCTAGTGATGTATAATGGAATACG 57.092 33.333 0.00 0.00 35.48 3.06
3554 7512 9.292195 TGTCTAGTGATGTATAATGGAATACGA 57.708 33.333 0.00 0.00 35.48 3.43
3559 7517 9.871238 AGTGATGTATAATGGAATACGAATACC 57.129 33.333 0.00 0.00 35.48 2.73
3560 7518 9.647797 GTGATGTATAATGGAATACGAATACCA 57.352 33.333 0.00 0.00 35.48 3.25
3561 7519 9.869757 TGATGTATAATGGAATACGAATACCAG 57.130 33.333 0.00 0.00 35.48 4.00
3562 7520 9.314321 GATGTATAATGGAATACGAATACCAGG 57.686 37.037 0.00 0.00 35.48 4.45
3563 7521 8.197592 TGTATAATGGAATACGAATACCAGGT 57.802 34.615 0.00 0.00 35.48 4.00
3564 7522 8.653191 TGTATAATGGAATACGAATACCAGGTT 58.347 33.333 0.00 0.00 35.48 3.50
3565 7523 9.148104 GTATAATGGAATACGAATACCAGGTTC 57.852 37.037 0.00 0.00 35.84 3.62
3566 7524 4.411256 TGGAATACGAATACCAGGTTCC 57.589 45.455 0.00 0.00 35.40 3.62
3567 7525 3.181473 TGGAATACGAATACCAGGTTCCG 60.181 47.826 0.00 1.64 37.14 4.30
3568 7526 3.181472 GGAATACGAATACCAGGTTCCGT 60.181 47.826 15.08 15.08 0.00 4.69
3569 7527 2.945447 TACGAATACCAGGTTCCGTG 57.055 50.000 18.31 1.67 0.00 4.94
3570 7528 1.259609 ACGAATACCAGGTTCCGTGA 58.740 50.000 0.00 0.00 0.00 4.35
3571 7529 1.067354 ACGAATACCAGGTTCCGTGAC 60.067 52.381 0.00 0.00 0.00 3.67
3572 7530 1.067425 CGAATACCAGGTTCCGTGACA 60.067 52.381 0.00 0.00 0.00 3.58
3573 7531 2.344025 GAATACCAGGTTCCGTGACAC 58.656 52.381 0.00 0.00 0.00 3.67
3574 7532 1.640917 ATACCAGGTTCCGTGACACT 58.359 50.000 0.00 0.00 0.00 3.55
3575 7533 0.677288 TACCAGGTTCCGTGACACTG 59.323 55.000 0.00 0.00 0.00 3.66
3576 7534 1.046472 ACCAGGTTCCGTGACACTGA 61.046 55.000 3.68 0.00 0.00 3.41
3577 7535 0.321671 CCAGGTTCCGTGACACTGAT 59.678 55.000 3.68 0.00 0.00 2.90
3578 7536 1.270839 CCAGGTTCCGTGACACTGATT 60.271 52.381 3.68 0.00 0.00 2.57
3579 7537 2.494059 CAGGTTCCGTGACACTGATTT 58.506 47.619 3.68 0.00 0.00 2.17
3580 7538 3.556213 CCAGGTTCCGTGACACTGATTTA 60.556 47.826 3.68 0.00 0.00 1.40
3581 7539 3.679980 CAGGTTCCGTGACACTGATTTAG 59.320 47.826 3.68 0.00 0.00 1.85
3582 7540 3.000727 GGTTCCGTGACACTGATTTAGG 58.999 50.000 3.68 0.00 0.00 2.69
3583 7541 3.556423 GGTTCCGTGACACTGATTTAGGT 60.556 47.826 3.68 0.00 0.00 3.08
3584 7542 4.322198 GGTTCCGTGACACTGATTTAGGTA 60.322 45.833 3.68 0.00 0.00 3.08
3585 7543 5.232463 GTTCCGTGACACTGATTTAGGTAA 58.768 41.667 3.68 0.00 0.00 2.85
3586 7544 5.471556 TCCGTGACACTGATTTAGGTAAA 57.528 39.130 3.68 0.00 0.00 2.01
3587 7545 6.045072 TCCGTGACACTGATTTAGGTAAAT 57.955 37.500 3.68 0.00 38.51 1.40
3588 7546 5.872617 TCCGTGACACTGATTTAGGTAAATG 59.127 40.000 3.68 0.00 36.13 2.32
3589 7547 5.642063 CCGTGACACTGATTTAGGTAAATGT 59.358 40.000 3.68 0.00 36.13 2.71
3590 7548 6.402118 CCGTGACACTGATTTAGGTAAATGTG 60.402 42.308 3.68 5.77 36.13 3.21
3591 7549 6.367695 CGTGACACTGATTTAGGTAAATGTGA 59.632 38.462 14.95 0.00 36.13 3.58
3592 7550 7.519002 GTGACACTGATTTAGGTAAATGTGAC 58.481 38.462 14.95 11.20 36.13 3.67
3593 7551 7.172532 GTGACACTGATTTAGGTAAATGTGACA 59.827 37.037 14.95 12.83 36.13 3.58
3594 7552 7.172532 TGACACTGATTTAGGTAAATGTGACAC 59.827 37.037 14.95 0.00 36.13 3.67
3595 7553 7.224297 ACACTGATTTAGGTAAATGTGACACT 58.776 34.615 14.95 0.00 36.13 3.55
3596 7554 8.372459 ACACTGATTTAGGTAAATGTGACACTA 58.628 33.333 14.95 0.00 36.13 2.74
3597 7555 8.873830 CACTGATTTAGGTAAATGTGACACTAG 58.126 37.037 7.20 0.00 36.13 2.57
3598 7556 8.041323 ACTGATTTAGGTAAATGTGACACTAGG 58.959 37.037 7.20 0.00 36.13 3.02
3599 7557 7.335627 TGATTTAGGTAAATGTGACACTAGGG 58.664 38.462 7.20 0.00 36.13 3.53
3600 7558 6.938698 TTTAGGTAAATGTGACACTAGGGA 57.061 37.500 0.00 0.00 0.00 4.20
3601 7559 6.540438 TTAGGTAAATGTGACACTAGGGAG 57.460 41.667 0.00 0.00 0.00 4.30
3602 7560 4.684724 AGGTAAATGTGACACTAGGGAGA 58.315 43.478 0.00 0.00 0.00 3.71
3603 7561 4.466726 AGGTAAATGTGACACTAGGGAGAC 59.533 45.833 0.00 0.00 0.00 3.36
3666 7624 6.949578 AAAATTCAATCTGCATTTACGTGG 57.050 33.333 0.00 0.00 0.00 4.94
3667 7625 5.643379 AATTCAATCTGCATTTACGTGGT 57.357 34.783 0.00 0.00 0.00 4.16
3671 7629 4.759693 TCAATCTGCATTTACGTGGTTCTT 59.240 37.500 0.00 0.00 0.00 2.52
3672 7630 5.935206 TCAATCTGCATTTACGTGGTTCTTA 59.065 36.000 0.00 0.00 0.00 2.10
3673 7631 6.597672 TCAATCTGCATTTACGTGGTTCTTAT 59.402 34.615 0.00 0.00 0.00 1.73
3674 7632 6.604735 ATCTGCATTTACGTGGTTCTTATC 57.395 37.500 0.00 0.00 0.00 1.75
3676 7634 5.935206 TCTGCATTTACGTGGTTCTTATCAA 59.065 36.000 0.00 0.00 0.00 2.57
3677 7635 6.428465 TCTGCATTTACGTGGTTCTTATCAAA 59.572 34.615 0.00 0.00 0.00 2.69
3678 7636 7.120579 TCTGCATTTACGTGGTTCTTATCAAAT 59.879 33.333 0.00 0.00 0.00 2.32
3679 7637 7.598278 TGCATTTACGTGGTTCTTATCAAATT 58.402 30.769 0.00 0.00 0.00 1.82
3680 7638 7.540400 TGCATTTACGTGGTTCTTATCAAATTG 59.460 33.333 0.00 0.00 0.00 2.32
3681 7639 7.540745 GCATTTACGTGGTTCTTATCAAATTGT 59.459 33.333 0.00 0.00 0.00 2.71
3682 7640 9.405587 CATTTACGTGGTTCTTATCAAATTGTT 57.594 29.630 0.00 0.00 0.00 2.83
3685 7643 7.972832 ACGTGGTTCTTATCAAATTGTTAGA 57.027 32.000 0.00 0.00 0.00 2.10
3686 7644 8.385898 ACGTGGTTCTTATCAAATTGTTAGAA 57.614 30.769 0.00 0.00 0.00 2.10
3719 7677 9.692325 ATTTAGCTTTCTTCATCCAGATTTACT 57.308 29.630 0.00 0.00 0.00 2.24
3720 7678 9.520515 TTTAGCTTTCTTCATCCAGATTTACTT 57.479 29.630 0.00 0.00 0.00 2.24
3721 7679 7.622893 AGCTTTCTTCATCCAGATTTACTTC 57.377 36.000 0.00 0.00 0.00 3.01
3722 7680 6.601217 AGCTTTCTTCATCCAGATTTACTTCC 59.399 38.462 0.00 0.00 0.00 3.46
3723 7681 6.601217 GCTTTCTTCATCCAGATTTACTTCCT 59.399 38.462 0.00 0.00 0.00 3.36
3724 7682 7.201688 GCTTTCTTCATCCAGATTTACTTCCTC 60.202 40.741 0.00 0.00 0.00 3.71
3725 7683 6.874278 TCTTCATCCAGATTTACTTCCTCA 57.126 37.500 0.00 0.00 0.00 3.86
3726 7684 7.443302 TCTTCATCCAGATTTACTTCCTCAT 57.557 36.000 0.00 0.00 0.00 2.90
3729 7687 7.675161 TCATCCAGATTTACTTCCTCATACA 57.325 36.000 0.00 0.00 0.00 2.29
3730 7688 8.089625 TCATCCAGATTTACTTCCTCATACAA 57.910 34.615 0.00 0.00 0.00 2.41
3731 7689 7.987458 TCATCCAGATTTACTTCCTCATACAAC 59.013 37.037 0.00 0.00 0.00 3.32
3733 7691 7.685481 TCCAGATTTACTTCCTCATACAACAA 58.315 34.615 0.00 0.00 0.00 2.83
3734 7692 8.328758 TCCAGATTTACTTCCTCATACAACAAT 58.671 33.333 0.00 0.00 0.00 2.71
3735 7693 9.613428 CCAGATTTACTTCCTCATACAACAATA 57.387 33.333 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.075851 AGGGGTTAATTACCTAGAATGCTAC 57.924 40.000 0.00 0.00 46.86 3.58
23 24 5.712084 AAAGAGAGGAGGGGTTAATTACC 57.288 43.478 0.00 0.00 46.99 2.85
70 75 7.309012 CCTGTTGATATTGAATCCATGGATGAC 60.309 40.741 27.97 22.81 34.70 3.06
89 94 3.640498 TGCATCAATTTTCCACCTGTTGA 59.360 39.130 0.00 0.00 33.82 3.18
139 144 9.981114 TTTTCTAAATTTCCTTCCACTTCATTC 57.019 29.630 0.00 0.00 0.00 2.67
174 179 6.579666 AATACAAGGCACATTATATGCAGG 57.420 37.500 0.00 0.00 45.27 4.85
314 645 5.133660 TGGATAACTATTGCTGGGGTACAAT 59.866 40.000 0.00 0.00 39.69 2.71
360 693 3.129287 ACAATGTCGAAAAGCATCCATCC 59.871 43.478 0.00 0.00 0.00 3.51
410 787 7.701445 GCATCTGCATATCTCAACTTAAGTTT 58.299 34.615 18.25 6.80 41.59 2.66
467 897 4.777463 CACATTTACCGAAATAGGGTCCT 58.223 43.478 0.00 0.00 38.99 3.85
472 902 4.319477 CCGATGCACATTTACCGAAATAGG 60.319 45.833 0.00 0.00 33.33 2.57
492 922 4.498345 GCTTAATTTTGTGTTGGTGACCGA 60.498 41.667 0.00 0.00 0.00 4.69
529 987 3.366985 GCGGGTGGGTATTTTCAGAAAAG 60.367 47.826 13.71 0.00 33.22 2.27
534 992 1.035385 GGGCGGGTGGGTATTTTCAG 61.035 60.000 0.00 0.00 0.00 3.02
550 1008 2.000825 GATTGAGGAAGGGAGGGGGC 62.001 65.000 0.00 0.00 0.00 5.80
575 1033 2.608268 TGTCACTTTGTCGTGTTTCGA 58.392 42.857 0.00 0.00 46.83 3.71
914 1372 2.249413 ATCTGCACCTCTTCCGGCTG 62.249 60.000 0.00 0.00 0.00 4.85
915 1373 1.965754 GATCTGCACCTCTTCCGGCT 61.966 60.000 0.00 0.00 0.00 5.52
935 1496 7.886970 ACTTACTAGTAGTAGGTTGTCATGTGA 59.113 37.037 17.03 0.00 37.69 3.58
937 1498 8.647256 AACTTACTAGTAGTAGGTTGTCATGT 57.353 34.615 27.75 9.89 45.44 3.21
961 1523 3.499157 GCACACCTACGATGTTTGGTTAA 59.501 43.478 0.00 0.00 0.00 2.01
970 1532 1.800655 GCTGAGAGCACACCTACGATG 60.801 57.143 0.00 0.00 41.89 3.84
1042 1604 6.054295 AGAAAGATTCAGTGGAGTATGATGC 58.946 40.000 0.00 0.00 0.00 3.91
1065 1628 7.166167 ACCATTACCTTACTGAACCTTTGTAG 58.834 38.462 0.00 0.00 0.00 2.74
1129 1695 6.310197 CACTTAGTCACAAAATTAGCTGCTC 58.690 40.000 4.91 0.00 0.00 4.26
1131 1697 4.853743 GCACTTAGTCACAAAATTAGCTGC 59.146 41.667 0.00 0.00 0.00 5.25
1135 1701 7.041098 AGGTTGAGCACTTAGTCACAAAATTAG 60.041 37.037 0.00 0.00 0.00 1.73
1147 1713 4.436050 CGTATTGCAAGGTTGAGCACTTAG 60.436 45.833 4.94 0.00 41.05 2.18
1163 1729 3.669122 CGAGCTACATAGGTTCGTATTGC 59.331 47.826 0.00 0.00 33.58 3.56
1202 1768 7.640616 TTGCAACACACATTAAAATCATGAG 57.359 32.000 0.09 0.00 0.00 2.90
1203 1769 8.604640 AATTGCAACACACATTAAAATCATGA 57.395 26.923 0.00 0.00 0.00 3.07
1229 1795 1.019278 CACAAACCCCGTCATCGAGG 61.019 60.000 0.00 0.00 40.79 4.63
1271 1837 4.271776 GGATAACTAATTCCGAACCAACCG 59.728 45.833 0.00 0.00 0.00 4.44
1360 1929 5.746245 GCTGCATAACAACACTTACAAACAA 59.254 36.000 0.00 0.00 0.00 2.83
1426 1998 5.163045 ACCCTTCTCAACTTCTTCTTCCAAT 60.163 40.000 0.00 0.00 0.00 3.16
1429 2001 4.068599 CACCCTTCTCAACTTCTTCTTCC 58.931 47.826 0.00 0.00 0.00 3.46
1441 2013 9.613428 CAACTAAATATATTCACACCCTTCTCA 57.387 33.333 0.00 0.00 0.00 3.27
1471 2043 4.764823 TCGTTTGCCCTCATTAACTCAAAT 59.235 37.500 0.00 0.00 0.00 2.32
1492 2064 3.428870 GGTCCGATAGCACATACAATTCG 59.571 47.826 0.00 0.00 0.00 3.34
1497 2069 0.671796 CCGGTCCGATAGCACATACA 59.328 55.000 14.39 0.00 0.00 2.29
1509 2081 1.745232 TTTTCATTCATCCCGGTCCG 58.255 50.000 3.60 3.60 0.00 4.79
1574 2148 6.610425 AGTTCTCCCTACCGTGTATATTTCTT 59.390 38.462 0.00 0.00 0.00 2.52
1608 2185 9.705290 GAAACTCATAATCCTTTTAAGGCAAAA 57.295 29.630 3.56 0.00 46.06 2.44
1852 2435 3.872511 TTTGCATTGGATGATGTGGTC 57.127 42.857 0.00 0.00 0.00 4.02
1940 2589 4.279420 AGCAAAGATTGAACTGTTTCCTCC 59.721 41.667 0.00 0.00 0.00 4.30
2068 2739 1.177401 GGGAGAGCACATCCAAAACC 58.823 55.000 4.51 0.00 38.70 3.27
2069 2740 1.815003 CTGGGAGAGCACATCCAAAAC 59.185 52.381 4.51 0.00 38.70 2.43
2107 2936 3.191273 TGTGTAGAGGAGTAGGAGGAGT 58.809 50.000 0.00 0.00 0.00 3.85
2116 2945 4.611564 ACTTCCCTATGTGTAGAGGAGT 57.388 45.455 0.00 0.00 37.49 3.85
2134 2970 6.238484 CGTTTGTCTTTGAGAGGATTCAACTT 60.238 38.462 0.00 0.00 36.84 2.66
2228 3066 2.123428 GGCTGATGACATGGCCACC 61.123 63.158 8.16 0.05 43.59 4.61
2260 3110 1.557832 ACTTTGCTACGCCCCTGAATA 59.442 47.619 0.00 0.00 0.00 1.75
2277 3127 2.200337 GGCACCCTTTTGGCGACTT 61.200 57.895 0.00 0.00 37.83 3.01
2460 3310 0.963856 AGACCGCACGACAGTATGGA 60.964 55.000 0.00 0.00 43.62 3.41
2480 3330 3.818787 CCAATCCAGCTGCGGCAC 61.819 66.667 21.93 0.00 41.70 5.01
2495 3345 1.842052 TGTAGACGATGCCACTACCA 58.158 50.000 0.00 0.00 36.62 3.25
2506 3356 5.182570 ACTGCTTACTTGTACATGTAGACGA 59.817 40.000 17.94 1.43 0.00 4.20
2529 3379 2.880890 AGGTGCTGACTTGACAATCAAC 59.119 45.455 0.00 0.00 32.21 3.18
2612 3466 1.271001 CCAGTCTCACATCTGCCACAA 60.271 52.381 0.00 0.00 0.00 3.33
2622 3476 3.322541 TCGGTACAAAATCCAGTCTCACA 59.677 43.478 0.00 0.00 0.00 3.58
2630 3484 5.556915 AGACATTCTTCGGTACAAAATCCA 58.443 37.500 0.00 0.00 0.00 3.41
2642 3496 1.560923 AATCGCCGAGACATTCTTCG 58.439 50.000 0.00 0.00 0.00 3.79
2643 3497 6.093404 TGATATAATCGCCGAGACATTCTTC 58.907 40.000 0.00 0.00 0.00 2.87
2648 3502 4.402474 TCCATGATATAATCGCCGAGACAT 59.598 41.667 0.00 0.00 0.00 3.06
2660 3514 8.756927 TGTTTTTCCAATTGCTCCATGATATAA 58.243 29.630 0.00 0.00 0.00 0.98
2693 3547 0.991355 TTCCACACCACCTCACCCTT 60.991 55.000 0.00 0.00 0.00 3.95
2715 3569 1.693606 CTCCATTGGTGGCACCTTTTT 59.306 47.619 34.69 15.52 45.63 1.94
2745 3602 2.229543 AGAAAATGCAGCTTTGATCGCA 59.770 40.909 1.50 0.00 39.01 5.10
2753 3610 2.288640 GCAGGTGAAGAAAATGCAGCTT 60.289 45.455 0.00 0.00 38.20 3.74
2809 3679 4.101585 TCCTTGTAAGCCCATATGTCTCTG 59.898 45.833 1.24 0.00 0.00 3.35
2815 3685 5.808366 TCTAGTCCTTGTAAGCCCATATG 57.192 43.478 0.00 0.00 0.00 1.78
2816 3686 8.686739 ATATTCTAGTCCTTGTAAGCCCATAT 57.313 34.615 0.00 0.00 0.00 1.78
2840 3710 8.893727 GCCAAGTTATACAGTTGTGAGAAATAT 58.106 33.333 0.00 0.00 34.32 1.28
2846 3716 3.181520 GCGCCAAGTTATACAGTTGTGAG 60.182 47.826 0.00 0.00 34.32 3.51
2866 3736 9.055248 CATCAGATTCTTTTACTTACAAAAGCG 57.945 33.333 3.94 0.00 42.63 4.68
2881 3751 6.830324 TGCTATTTGCTAACCATCAGATTCTT 59.170 34.615 0.00 0.00 43.37 2.52
2886 3756 7.012327 GTGTATTGCTATTTGCTAACCATCAGA 59.988 37.037 0.00 0.00 43.37 3.27
2931 3804 5.496387 CGTTACATGTGAATGAAGAGATGC 58.504 41.667 9.11 0.00 0.00 3.91
2932 3805 5.007039 CCCGTTACATGTGAATGAAGAGATG 59.993 44.000 9.11 0.00 0.00 2.90
2967 3840 3.442625 TGTGGTGTAACACTATCTCGAGG 59.557 47.826 13.56 0.00 41.84 4.63
2991 3864 5.360591 AGTGTTGTATAGCTAGCATCCAAC 58.639 41.667 18.83 21.04 33.23 3.77
2995 3868 5.918011 GTGAGAGTGTTGTATAGCTAGCATC 59.082 44.000 18.83 4.59 0.00 3.91
3042 3915 5.221521 ACAAGACAGAGTAGCTTTCATGTCA 60.222 40.000 18.28 0.00 39.54 3.58
3046 3919 6.597832 AGTACAAGACAGAGTAGCTTTCAT 57.402 37.500 0.00 0.00 0.00 2.57
3057 3930 7.876068 CCATAGTTACCAAAAGTACAAGACAGA 59.124 37.037 0.00 0.00 0.00 3.41
3062 3935 8.385898 TGTTCCATAGTTACCAAAAGTACAAG 57.614 34.615 0.00 0.00 0.00 3.16
3065 3938 9.673454 CTTTTGTTCCATAGTTACCAAAAGTAC 57.327 33.333 12.23 0.00 35.16 2.73
3120 3996 0.891904 GTAAACCTTGGAAGCGGGCA 60.892 55.000 0.00 0.00 0.00 5.36
3126 4002 4.278170 TGTCTTGCATGTAAACCTTGGAAG 59.722 41.667 0.00 7.60 43.60 3.46
3127 4003 4.211125 TGTCTTGCATGTAAACCTTGGAA 58.789 39.130 0.00 0.00 0.00 3.53
3146 4022 1.077212 AGCTGGGACCATGCATGTC 60.077 57.895 24.58 19.86 0.00 3.06
3166 4042 7.167968 CCGAGCATATTTTGGATGTGTTTTATG 59.832 37.037 0.00 0.00 0.00 1.90
3170 4046 4.704540 TCCGAGCATATTTTGGATGTGTTT 59.295 37.500 0.00 0.00 0.00 2.83
3179 4056 3.381272 ACCATGGTTCCGAGCATATTTTG 59.619 43.478 13.00 0.00 41.82 2.44
3193 4070 4.278170 CACACACACATTAGAACCATGGTT 59.722 41.667 30.23 30.23 41.54 3.67
3194 4071 3.820467 CACACACACATTAGAACCATGGT 59.180 43.478 13.00 13.00 0.00 3.55
3195 4072 3.820467 ACACACACACATTAGAACCATGG 59.180 43.478 11.19 11.19 0.00 3.66
3196 4073 5.437289 AACACACACACATTAGAACCATG 57.563 39.130 0.00 0.00 0.00 3.66
3198 4075 5.906113 AAAACACACACACATTAGAACCA 57.094 34.783 0.00 0.00 0.00 3.67
3199 4076 6.034470 CACAAAAACACACACACATTAGAACC 59.966 38.462 0.00 0.00 0.00 3.62
3200 4077 6.584563 ACACAAAAACACACACACATTAGAAC 59.415 34.615 0.00 0.00 0.00 3.01
3201 4078 6.584184 CACACAAAAACACACACACATTAGAA 59.416 34.615 0.00 0.00 0.00 2.10
3202 4079 6.089476 CACACAAAAACACACACACATTAGA 58.911 36.000 0.00 0.00 0.00 2.10
3203 4080 5.861251 ACACACAAAAACACACACACATTAG 59.139 36.000 0.00 0.00 0.00 1.73
3204 4081 5.773575 ACACACAAAAACACACACACATTA 58.226 33.333 0.00 0.00 0.00 1.90
3205 4082 4.626042 ACACACAAAAACACACACACATT 58.374 34.783 0.00 0.00 0.00 2.71
3206 4083 4.250116 ACACACAAAAACACACACACAT 57.750 36.364 0.00 0.00 0.00 3.21
3219 4313 5.588246 TCATCAAGCTTCTACAACACACAAA 59.412 36.000 0.00 0.00 0.00 2.83
3221 4315 4.511454 GTCATCAAGCTTCTACAACACACA 59.489 41.667 0.00 0.00 0.00 3.72
3222 4316 4.511454 TGTCATCAAGCTTCTACAACACAC 59.489 41.667 0.00 0.00 0.00 3.82
3223 4317 4.702831 TGTCATCAAGCTTCTACAACACA 58.297 39.130 0.00 0.00 0.00 3.72
3224 4318 4.153117 CCTGTCATCAAGCTTCTACAACAC 59.847 45.833 0.00 0.00 0.00 3.32
3225 4319 4.040339 TCCTGTCATCAAGCTTCTACAACA 59.960 41.667 0.00 0.00 0.00 3.33
3226 4320 4.569943 TCCTGTCATCAAGCTTCTACAAC 58.430 43.478 0.00 0.00 0.00 3.32
3228 4322 5.426689 AATCCTGTCATCAAGCTTCTACA 57.573 39.130 0.00 0.00 0.00 2.74
3229 4323 5.645497 ACAAATCCTGTCATCAAGCTTCTAC 59.355 40.000 0.00 0.00 29.87 2.59
3230 4324 5.809001 ACAAATCCTGTCATCAAGCTTCTA 58.191 37.500 0.00 0.00 29.87 2.10
3254 7208 3.290710 AGCACATACCCTATGGCAAAAG 58.709 45.455 0.00 0.00 40.47 2.27
3259 7213 2.618709 GTGAAAGCACATACCCTATGGC 59.381 50.000 0.00 0.00 44.51 4.40
3261 7215 2.872245 CCGTGAAAGCACATACCCTATG 59.128 50.000 0.00 0.00 45.41 2.23
3263 7217 1.208535 CCCGTGAAAGCACATACCCTA 59.791 52.381 0.00 0.00 45.41 3.53
3265 7219 0.322187 ACCCGTGAAAGCACATACCC 60.322 55.000 0.00 0.00 45.41 3.69
3276 7230 6.013466 AGGGTAGTTAATTTCTAACCCGTGAA 60.013 38.462 16.04 0.00 43.94 3.18
3278 7232 5.737860 AGGGTAGTTAATTTCTAACCCGTG 58.262 41.667 16.04 0.00 43.94 4.94
3279 7233 5.104776 GGAGGGTAGTTAATTTCTAACCCGT 60.105 44.000 16.04 4.33 43.94 5.28
3280 7234 5.129980 AGGAGGGTAGTTAATTTCTAACCCG 59.870 44.000 16.04 0.00 43.94 5.28
3291 7245 7.853003 AGGGATTGTTAATAGGAGGGTAGTTAA 59.147 37.037 0.00 0.00 0.00 2.01
3293 7247 6.218053 AGGGATTGTTAATAGGAGGGTAGTT 58.782 40.000 0.00 0.00 0.00 2.24
3294 7248 5.800653 AGGGATTGTTAATAGGAGGGTAGT 58.199 41.667 0.00 0.00 0.00 2.73
3295 7249 7.017531 ACTAGGGATTGTTAATAGGAGGGTAG 58.982 42.308 0.00 0.00 0.00 3.18
3360 7314 8.241367 GCCCCATAACGAATAATACCATTAAAG 58.759 37.037 0.00 0.00 0.00 1.85
3366 7320 4.595781 AGAGCCCCATAACGAATAATACCA 59.404 41.667 0.00 0.00 0.00 3.25
3367 7321 5.161943 AGAGCCCCATAACGAATAATACC 57.838 43.478 0.00 0.00 0.00 2.73
3369 7323 5.801380 GGAAGAGCCCCATAACGAATAATA 58.199 41.667 0.00 0.00 0.00 0.98
3370 7324 4.652822 GGAAGAGCCCCATAACGAATAAT 58.347 43.478 0.00 0.00 0.00 1.28
3371 7325 4.081322 GGAAGAGCCCCATAACGAATAA 57.919 45.455 0.00 0.00 0.00 1.40
3372 7326 3.764237 GGAAGAGCCCCATAACGAATA 57.236 47.619 0.00 0.00 0.00 1.75
3373 7327 2.640316 GGAAGAGCCCCATAACGAAT 57.360 50.000 0.00 0.00 0.00 3.34
3428 7386 5.698545 CACCCTTCTCTACTTCTTCAACAAG 59.301 44.000 0.00 0.00 0.00 3.16
3431 7389 3.997681 GCACCCTTCTCTACTTCTTCAAC 59.002 47.826 0.00 0.00 0.00 3.18
3433 7391 2.231478 CGCACCCTTCTCTACTTCTTCA 59.769 50.000 0.00 0.00 0.00 3.02
3457 7415 9.419297 CGCTAACTGAAATGCCTACTAAATATA 57.581 33.333 0.00 0.00 0.00 0.86
3458 7416 7.095187 GCGCTAACTGAAATGCCTACTAAATAT 60.095 37.037 0.00 0.00 0.00 1.28
3459 7417 6.202188 GCGCTAACTGAAATGCCTACTAAATA 59.798 38.462 0.00 0.00 0.00 1.40
3460 7418 5.007724 GCGCTAACTGAAATGCCTACTAAAT 59.992 40.000 0.00 0.00 0.00 1.40
3461 7419 4.331717 GCGCTAACTGAAATGCCTACTAAA 59.668 41.667 0.00 0.00 0.00 1.85
3462 7420 3.869246 GCGCTAACTGAAATGCCTACTAA 59.131 43.478 0.00 0.00 0.00 2.24
3463 7421 3.454375 GCGCTAACTGAAATGCCTACTA 58.546 45.455 0.00 0.00 0.00 1.82
3464 7422 2.280628 GCGCTAACTGAAATGCCTACT 58.719 47.619 0.00 0.00 0.00 2.57
3465 7423 1.004927 CGCGCTAACTGAAATGCCTAC 60.005 52.381 5.56 0.00 0.00 3.18
3466 7424 1.286501 CGCGCTAACTGAAATGCCTA 58.713 50.000 5.56 0.00 0.00 3.93
3467 7425 0.673644 ACGCGCTAACTGAAATGCCT 60.674 50.000 5.73 0.00 0.00 4.75
3468 7426 0.168128 AACGCGCTAACTGAAATGCC 59.832 50.000 5.73 0.00 0.00 4.40
3469 7427 2.798834 TAACGCGCTAACTGAAATGC 57.201 45.000 5.73 0.00 0.00 3.56
3470 7428 4.892655 TCATTAACGCGCTAACTGAAATG 58.107 39.130 5.73 0.00 0.00 2.32
3471 7429 5.106869 TGTTCATTAACGCGCTAACTGAAAT 60.107 36.000 19.23 0.00 38.53 2.17
3472 7430 4.211584 TGTTCATTAACGCGCTAACTGAAA 59.788 37.500 19.23 12.11 38.53 2.69
3473 7431 3.741856 TGTTCATTAACGCGCTAACTGAA 59.258 39.130 5.73 13.27 38.53 3.02
3474 7432 3.318886 TGTTCATTAACGCGCTAACTGA 58.681 40.909 5.73 8.03 38.53 3.41
3475 7433 3.715618 TGTTCATTAACGCGCTAACTG 57.284 42.857 5.73 5.75 38.53 3.16
3476 7434 4.939509 ATTGTTCATTAACGCGCTAACT 57.060 36.364 5.73 0.00 38.53 2.24
3477 7435 6.138546 CACATATTGTTCATTAACGCGCTAAC 59.861 38.462 5.73 2.39 38.53 2.34
3478 7436 6.188871 CACATATTGTTCATTAACGCGCTAA 58.811 36.000 5.73 4.84 38.53 3.09
3479 7437 5.733299 CACATATTGTTCATTAACGCGCTA 58.267 37.500 5.73 0.00 38.53 4.26
3480 7438 4.587306 CACATATTGTTCATTAACGCGCT 58.413 39.130 5.73 0.00 38.53 5.92
3481 7439 3.177643 GCACATATTGTTCATTAACGCGC 59.822 43.478 5.73 0.00 38.53 6.86
3482 7440 3.723764 GGCACATATTGTTCATTAACGCG 59.276 43.478 3.53 3.53 38.53 6.01
3483 7441 4.667262 TGGCACATATTGTTCATTAACGC 58.333 39.130 0.00 0.00 38.53 4.84
3500 7458 2.825836 CTTCCGCTCCCATGGCAC 60.826 66.667 6.09 0.00 0.00 5.01
3501 7459 4.113815 CCTTCCGCTCCCATGGCA 62.114 66.667 6.09 0.00 0.00 4.92
3502 7460 3.797353 TCCTTCCGCTCCCATGGC 61.797 66.667 6.09 0.00 0.00 4.40
3503 7461 2.190578 GTCCTTCCGCTCCCATGG 59.809 66.667 4.14 4.14 0.00 3.66
3504 7462 2.190578 GGTCCTTCCGCTCCCATG 59.809 66.667 0.00 0.00 0.00 3.66
3505 7463 1.497309 TTTGGTCCTTCCGCTCCCAT 61.497 55.000 0.00 0.00 39.52 4.00
3506 7464 1.710996 TTTTGGTCCTTCCGCTCCCA 61.711 55.000 0.00 0.00 39.52 4.37
3507 7465 0.538746 TTTTTGGTCCTTCCGCTCCC 60.539 55.000 0.00 0.00 39.52 4.30
3508 7466 1.545841 ATTTTTGGTCCTTCCGCTCC 58.454 50.000 0.00 0.00 39.52 4.70
3509 7467 2.296190 ACAATTTTTGGTCCTTCCGCTC 59.704 45.455 0.00 0.00 39.52 5.03
3510 7468 2.296190 GACAATTTTTGGTCCTTCCGCT 59.704 45.455 0.00 0.00 39.52 5.52
3511 7469 2.296190 AGACAATTTTTGGTCCTTCCGC 59.704 45.455 0.00 0.00 39.52 5.54
3512 7470 4.760204 ACTAGACAATTTTTGGTCCTTCCG 59.240 41.667 0.00 0.00 39.52 4.30
3513 7471 5.768164 TCACTAGACAATTTTTGGTCCTTCC 59.232 40.000 0.00 0.00 34.58 3.46
3514 7472 6.877611 TCACTAGACAATTTTTGGTCCTTC 57.122 37.500 0.00 0.00 34.58 3.46
3515 7473 6.777580 ACATCACTAGACAATTTTTGGTCCTT 59.222 34.615 0.00 0.00 34.58 3.36
3516 7474 6.306987 ACATCACTAGACAATTTTTGGTCCT 58.693 36.000 0.00 0.00 34.58 3.85
3517 7475 6.575162 ACATCACTAGACAATTTTTGGTCC 57.425 37.500 0.00 0.00 34.58 4.46
3527 7485 9.908152 CGTATTCCATTATACATCACTAGACAA 57.092 33.333 0.00 0.00 31.80 3.18
3528 7486 9.292195 TCGTATTCCATTATACATCACTAGACA 57.708 33.333 0.00 0.00 31.80 3.41
3533 7491 9.871238 GGTATTCGTATTCCATTATACATCACT 57.129 33.333 0.00 0.00 31.80 3.41
3534 7492 9.647797 TGGTATTCGTATTCCATTATACATCAC 57.352 33.333 0.00 0.00 31.80 3.06
3535 7493 9.869757 CTGGTATTCGTATTCCATTATACATCA 57.130 33.333 0.95 0.00 31.66 3.07
3536 7494 9.314321 CCTGGTATTCGTATTCCATTATACATC 57.686 37.037 0.95 0.00 31.66 3.06
3537 7495 8.822805 ACCTGGTATTCGTATTCCATTATACAT 58.177 33.333 0.00 0.00 31.66 2.29
3538 7496 8.197592 ACCTGGTATTCGTATTCCATTATACA 57.802 34.615 0.00 0.00 31.66 2.29
3539 7497 9.148104 GAACCTGGTATTCGTATTCCATTATAC 57.852 37.037 0.00 0.00 31.66 1.47
3540 7498 8.316214 GGAACCTGGTATTCGTATTCCATTATA 58.684 37.037 0.00 0.00 35.30 0.98
3541 7499 7.166167 GGAACCTGGTATTCGTATTCCATTAT 58.834 38.462 0.00 0.00 35.30 1.28
3542 7500 6.527423 GGAACCTGGTATTCGTATTCCATTA 58.473 40.000 0.00 0.00 35.30 1.90
3543 7501 5.374071 GGAACCTGGTATTCGTATTCCATT 58.626 41.667 0.00 0.00 35.30 3.16
3544 7502 4.502604 CGGAACCTGGTATTCGTATTCCAT 60.503 45.833 0.00 0.00 34.97 3.41
3545 7503 3.181473 CGGAACCTGGTATTCGTATTCCA 60.181 47.826 0.00 0.67 34.97 3.53
3546 7504 3.181472 ACGGAACCTGGTATTCGTATTCC 60.181 47.826 16.53 9.34 0.00 3.01
3547 7505 3.800506 CACGGAACCTGGTATTCGTATTC 59.199 47.826 17.26 2.77 0.00 1.75
3548 7506 3.448301 TCACGGAACCTGGTATTCGTATT 59.552 43.478 17.26 0.00 0.00 1.89
3549 7507 3.025978 TCACGGAACCTGGTATTCGTAT 58.974 45.455 17.26 0.00 0.00 3.06
3550 7508 2.164219 GTCACGGAACCTGGTATTCGTA 59.836 50.000 17.26 7.61 0.00 3.43
3551 7509 1.067354 GTCACGGAACCTGGTATTCGT 60.067 52.381 13.63 13.63 0.00 3.85
3552 7510 1.067425 TGTCACGGAACCTGGTATTCG 60.067 52.381 0.00 7.29 0.00 3.34
3553 7511 2.028385 AGTGTCACGGAACCTGGTATTC 60.028 50.000 0.00 0.00 0.00 1.75
3554 7512 1.975680 AGTGTCACGGAACCTGGTATT 59.024 47.619 0.00 0.00 0.00 1.89
3555 7513 1.275291 CAGTGTCACGGAACCTGGTAT 59.725 52.381 0.00 0.00 0.00 2.73
3556 7514 0.677288 CAGTGTCACGGAACCTGGTA 59.323 55.000 0.00 0.00 0.00 3.25
3557 7515 1.046472 TCAGTGTCACGGAACCTGGT 61.046 55.000 3.09 0.00 0.00 4.00
3558 7516 0.321671 ATCAGTGTCACGGAACCTGG 59.678 55.000 9.93 0.00 0.00 4.45
3559 7517 2.169832 AATCAGTGTCACGGAACCTG 57.830 50.000 9.93 0.00 0.00 4.00
3560 7518 2.930826 AAATCAGTGTCACGGAACCT 57.069 45.000 9.93 0.00 0.00 3.50
3561 7519 3.000727 CCTAAATCAGTGTCACGGAACC 58.999 50.000 9.93 0.00 0.00 3.62
3562 7520 3.660865 ACCTAAATCAGTGTCACGGAAC 58.339 45.455 9.93 0.00 0.00 3.62
3563 7521 5.471556 TTACCTAAATCAGTGTCACGGAA 57.528 39.130 9.93 0.00 0.00 4.30
3564 7522 5.471556 TTTACCTAAATCAGTGTCACGGA 57.528 39.130 8.31 8.31 0.00 4.69
3565 7523 5.642063 ACATTTACCTAAATCAGTGTCACGG 59.358 40.000 0.00 0.00 33.88 4.94
3566 7524 6.367695 TCACATTTACCTAAATCAGTGTCACG 59.632 38.462 0.00 0.00 34.17 4.35
3567 7525 7.172532 TGTCACATTTACCTAAATCAGTGTCAC 59.827 37.037 0.00 0.00 34.17 3.67
3568 7526 7.172532 GTGTCACATTTACCTAAATCAGTGTCA 59.827 37.037 0.00 0.00 34.17 3.58
3569 7527 7.387948 AGTGTCACATTTACCTAAATCAGTGTC 59.612 37.037 5.62 0.00 34.17 3.67
3570 7528 7.224297 AGTGTCACATTTACCTAAATCAGTGT 58.776 34.615 5.62 0.00 34.17 3.55
3571 7529 7.672983 AGTGTCACATTTACCTAAATCAGTG 57.327 36.000 5.62 0.00 33.88 3.66
3572 7530 8.041323 CCTAGTGTCACATTTACCTAAATCAGT 58.959 37.037 5.62 0.00 33.88 3.41
3573 7531 7.495934 CCCTAGTGTCACATTTACCTAAATCAG 59.504 40.741 5.62 0.00 33.88 2.90
3574 7532 7.181305 TCCCTAGTGTCACATTTACCTAAATCA 59.819 37.037 5.62 0.00 33.88 2.57
3575 7533 7.562135 TCCCTAGTGTCACATTTACCTAAATC 58.438 38.462 5.62 0.00 33.88 2.17
3576 7534 7.402071 TCTCCCTAGTGTCACATTTACCTAAAT 59.598 37.037 5.62 0.00 36.39 1.40
3577 7535 6.727231 TCTCCCTAGTGTCACATTTACCTAAA 59.273 38.462 5.62 0.00 0.00 1.85
3578 7536 6.154021 GTCTCCCTAGTGTCACATTTACCTAA 59.846 42.308 5.62 0.00 0.00 2.69
3579 7537 5.655532 GTCTCCCTAGTGTCACATTTACCTA 59.344 44.000 5.62 0.00 0.00 3.08
3580 7538 4.466726 GTCTCCCTAGTGTCACATTTACCT 59.533 45.833 5.62 0.00 0.00 3.08
3581 7539 4.382793 GGTCTCCCTAGTGTCACATTTACC 60.383 50.000 5.62 0.05 0.00 2.85
3582 7540 4.222145 TGGTCTCCCTAGTGTCACATTTAC 59.778 45.833 5.62 0.00 0.00 2.01
3583 7541 4.422057 TGGTCTCCCTAGTGTCACATTTA 58.578 43.478 5.62 0.00 0.00 1.40
3584 7542 3.248024 TGGTCTCCCTAGTGTCACATTT 58.752 45.455 5.62 0.00 0.00 2.32
3585 7543 2.902608 TGGTCTCCCTAGTGTCACATT 58.097 47.619 5.62 0.00 0.00 2.71
3586 7544 2.623418 TGGTCTCCCTAGTGTCACAT 57.377 50.000 5.62 0.00 0.00 3.21
3587 7545 2.567169 CAATGGTCTCCCTAGTGTCACA 59.433 50.000 5.62 0.00 0.00 3.58
3588 7546 2.567615 ACAATGGTCTCCCTAGTGTCAC 59.432 50.000 0.00 0.00 0.00 3.67
3589 7547 2.902608 ACAATGGTCTCCCTAGTGTCA 58.097 47.619 0.00 0.00 0.00 3.58
3590 7548 3.983044 AACAATGGTCTCCCTAGTGTC 57.017 47.619 0.00 0.00 0.00 3.67
3591 7549 3.650942 TCAAACAATGGTCTCCCTAGTGT 59.349 43.478 0.00 0.00 0.00 3.55
3592 7550 4.286297 TCAAACAATGGTCTCCCTAGTG 57.714 45.455 0.00 0.00 0.00 2.74
3593 7551 4.993705 TTCAAACAATGGTCTCCCTAGT 57.006 40.909 0.00 0.00 0.00 2.57
3594 7552 9.799106 AATATATTCAAACAATGGTCTCCCTAG 57.201 33.333 0.00 0.00 0.00 3.02
3596 7554 9.492730 AAAATATATTCAAACAATGGTCTCCCT 57.507 29.630 0.00 0.00 0.00 4.20
3642 7600 7.598278 ACCACGTAAATGCAGATTGAATTTTA 58.402 30.769 0.64 0.00 36.93 1.52
3644 7602 6.024552 ACCACGTAAATGCAGATTGAATTT 57.975 33.333 0.00 1.03 38.97 1.82
3645 7603 5.643379 ACCACGTAAATGCAGATTGAATT 57.357 34.783 0.00 0.00 0.00 2.17
3646 7604 5.415701 AGAACCACGTAAATGCAGATTGAAT 59.584 36.000 0.00 0.00 0.00 2.57
3647 7605 4.759693 AGAACCACGTAAATGCAGATTGAA 59.240 37.500 0.00 0.00 0.00 2.69
3648 7606 4.323417 AGAACCACGTAAATGCAGATTGA 58.677 39.130 0.00 0.00 0.00 2.57
3649 7607 4.685169 AGAACCACGTAAATGCAGATTG 57.315 40.909 0.00 0.00 0.00 2.67
3652 7610 5.483811 TGATAAGAACCACGTAAATGCAGA 58.516 37.500 0.00 0.00 0.00 4.26
3653 7611 5.794687 TGATAAGAACCACGTAAATGCAG 57.205 39.130 0.00 0.00 0.00 4.41
3654 7612 6.561737 TTTGATAAGAACCACGTAAATGCA 57.438 33.333 0.00 0.00 0.00 3.96
3655 7613 7.540745 ACAATTTGATAAGAACCACGTAAATGC 59.459 33.333 2.79 0.00 0.00 3.56
3656 7614 8.964420 ACAATTTGATAAGAACCACGTAAATG 57.036 30.769 2.79 0.00 0.00 2.32
3659 7617 9.491675 TCTAACAATTTGATAAGAACCACGTAA 57.508 29.630 2.79 0.00 0.00 3.18
3660 7618 9.491675 TTCTAACAATTTGATAAGAACCACGTA 57.508 29.630 2.79 0.00 0.00 3.57
3661 7619 7.972832 TCTAACAATTTGATAAGAACCACGT 57.027 32.000 2.79 0.00 0.00 4.49
3662 7620 9.329913 CTTTCTAACAATTTGATAAGAACCACG 57.670 33.333 2.79 0.00 0.00 4.94
3694 7652 9.520515 AAGTAAATCTGGATGAAGAAAGCTAAA 57.479 29.630 0.00 0.00 0.00 1.85
3695 7653 9.167311 GAAGTAAATCTGGATGAAGAAAGCTAA 57.833 33.333 0.00 0.00 0.00 3.09
3696 7654 7.770897 GGAAGTAAATCTGGATGAAGAAAGCTA 59.229 37.037 0.00 0.00 0.00 3.32
3698 7656 6.601217 AGGAAGTAAATCTGGATGAAGAAAGC 59.399 38.462 0.00 0.00 0.00 3.51
3699 7657 7.826252 TGAGGAAGTAAATCTGGATGAAGAAAG 59.174 37.037 0.00 0.00 0.00 2.62
3700 7658 7.689299 TGAGGAAGTAAATCTGGATGAAGAAA 58.311 34.615 0.00 0.00 0.00 2.52
3702 7660 6.874278 TGAGGAAGTAAATCTGGATGAAGA 57.126 37.500 0.00 0.00 0.00 2.87
3704 7662 8.089625 TGTATGAGGAAGTAAATCTGGATGAA 57.910 34.615 0.00 0.00 0.00 2.57
3707 7665 7.861629 TGTTGTATGAGGAAGTAAATCTGGAT 58.138 34.615 0.00 0.00 0.00 3.41
3708 7666 7.252612 TGTTGTATGAGGAAGTAAATCTGGA 57.747 36.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.