Multiple sequence alignment - TraesCS4A01G429800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G429800 chr4A 100.000 2705 0 0 1 2705 701281919 701284623 0.000000e+00 4996.0
1 TraesCS4A01G429800 chr4A 85.327 627 82 2 1022 1644 701293315 701293935 8.170000e-180 640.0
2 TraesCS4A01G429800 chr4A 92.308 156 11 1 706 860 625158686 625158841 1.260000e-53 220.0
3 TraesCS4A01G429800 chr4A 79.181 293 48 10 1016 1303 705546380 705546096 9.890000e-45 191.0
4 TraesCS4A01G429800 chr7A 92.418 910 59 9 871 1771 29165721 29164813 0.000000e+00 1290.0
5 TraesCS4A01G429800 chr7A 93.094 753 35 6 1962 2705 29164759 29164015 0.000000e+00 1086.0
6 TraesCS4A01G429800 chr7A 89.266 531 46 7 118 645 29166338 29165816 0.000000e+00 654.0
7 TraesCS4A01G429800 chr7A 80.162 862 138 15 891 1736 29161028 29160184 4.950000e-172 614.0
8 TraesCS4A01G429800 chr7A 90.850 153 13 1 706 857 650774254 650774406 1.270000e-48 204.0
9 TraesCS4A01G429800 chr7A 90.728 151 13 1 706 855 607561520 607561670 1.640000e-47 200.0
10 TraesCS4A01G429800 chr7D 90.079 756 69 1 1010 1765 29057376 29056627 0.000000e+00 976.0
11 TraesCS4A01G429800 chr7D 82.264 265 37 8 1077 1332 22624603 22624340 1.260000e-53 220.0
12 TraesCS4A01G429800 chr7D 78.977 176 32 4 1974 2148 1564754 1564583 6.120000e-22 115.0
13 TraesCS4A01G429800 chr1B 82.827 658 105 4 1016 1672 349547301 349546651 1.400000e-162 582.0
14 TraesCS4A01G429800 chr1B 94.488 127 5 2 1836 1961 665073692 665073817 7.640000e-46 195.0
15 TraesCS4A01G429800 chr1B 79.570 186 28 4 1975 2150 367087503 367087688 1.020000e-24 124.0
16 TraesCS4A01G429800 chr1A 81.953 676 109 9 999 1672 337658544 337657880 6.540000e-156 560.0
17 TraesCS4A01G429800 chr1A 90.566 159 14 1 706 863 72760330 72760172 2.730000e-50 209.0
18 TraesCS4A01G429800 chr1A 80.311 193 28 6 1968 2150 405463075 405462883 1.310000e-28 137.0
19 TraesCS4A01G429800 chr1D 82.094 659 108 6 1016 1672 262287837 262288487 3.040000e-154 555.0
20 TraesCS4A01G429800 chr1D 94.574 129 4 2 1836 1961 431709165 431709037 2.120000e-46 196.0
21 TraesCS4A01G429800 chr3D 94.118 153 9 0 703 855 24238972 24239124 1.620000e-57 233.0
22 TraesCS4A01G429800 chr3D 83.696 92 15 0 1973 2064 49650687 49650778 1.330000e-13 87.9
23 TraesCS4A01G429800 chr6D 93.421 152 10 0 704 855 469816551 469816400 2.710000e-55 226.0
24 TraesCS4A01G429800 chr6D 93.985 133 7 1 703 834 12999877 13000009 1.640000e-47 200.0
25 TraesCS4A01G429800 chr4B 97.638 127 1 2 1836 1960 22236379 22236505 1.630000e-52 217.0
26 TraesCS4A01G429800 chr4B 81.347 193 26 4 1968 2150 558592908 558592716 6.030000e-32 148.0
27 TraesCS4A01G429800 chr4B 80.102 196 28 8 1966 2150 580012382 580012577 4.700000e-28 135.0
28 TraesCS4A01G429800 chr5B 90.909 154 13 1 709 861 528516892 528516739 3.530000e-49 206.0
29 TraesCS4A01G429800 chr5B 94.531 128 5 2 1836 1961 9272534 9272407 2.120000e-46 196.0
30 TraesCS4A01G429800 chr5B 80.108 186 27 4 1975 2150 690616573 690616388 2.190000e-26 130.0
31 TraesCS4A01G429800 chr6B 96.063 127 2 3 1836 1961 653759543 653759419 1.270000e-48 204.0
32 TraesCS4A01G429800 chr6B 94.488 127 4 3 1836 1961 653849626 653849502 2.750000e-45 193.0
33 TraesCS4A01G429800 chr6B 82.258 186 23 7 1975 2150 452390193 452390008 4.660000e-33 152.0
34 TraesCS4A01G429800 chr2B 96.000 125 3 2 1836 1959 215471665 215471788 4.570000e-48 202.0
35 TraesCS4A01G429800 chr2B 94.488 127 6 1 1836 1961 106164547 106164673 7.640000e-46 195.0
36 TraesCS4A01G429800 chr2D 94.444 126 7 0 1836 1961 459317489 459317614 7.640000e-46 195.0
37 TraesCS4A01G429800 chr3A 89.404 151 15 1 706 855 25989826 25989676 3.560000e-44 189.0
38 TraesCS4A01G429800 chr3A 83.146 178 26 3 1976 2150 519234596 519234772 2.790000e-35 159.0
39 TraesCS4A01G429800 chr3A 79.459 185 27 5 1977 2150 669730232 669730048 1.320000e-23 121.0
40 TraesCS4A01G429800 chr4D 82.105 190 24 4 1971 2150 387607494 387607305 1.300000e-33 154.0
41 TraesCS4A01G429800 chr3B 81.915 188 23 5 1973 2150 128922082 128922268 6.030000e-32 148.0
42 TraesCS4A01G429800 chr3B 80.000 190 28 4 1971 2150 174971062 174971251 6.080000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G429800 chr4A 701281919 701284623 2704 False 4996 4996 100.000 1 2705 1 chr4A.!!$F2 2704
1 TraesCS4A01G429800 chr4A 701293315 701293935 620 False 640 640 85.327 1022 1644 1 chr4A.!!$F3 622
2 TraesCS4A01G429800 chr7A 29160184 29166338 6154 True 911 1290 88.735 118 2705 4 chr7A.!!$R1 2587
3 TraesCS4A01G429800 chr7D 29056627 29057376 749 True 976 976 90.079 1010 1765 1 chr7D.!!$R3 755
4 TraesCS4A01G429800 chr1B 349546651 349547301 650 True 582 582 82.827 1016 1672 1 chr1B.!!$R1 656
5 TraesCS4A01G429800 chr1A 337657880 337658544 664 True 560 560 81.953 999 1672 1 chr1A.!!$R2 673
6 TraesCS4A01G429800 chr1D 262287837 262288487 650 False 555 555 82.094 1016 1672 1 chr1D.!!$F1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 851 0.03831 GGCACCCTACTGAAAAGGCT 59.962 55.0 0.0 0.0 32.34 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 1948 0.478942 GATTAAGGGGGAGAAGGGGC 59.521 60.0 0.0 0.0 0.0 5.8 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.594603 CTCTGGACATACAAACCTCGT 57.405 47.619 0.00 0.00 0.00 4.18
21 22 4.713824 CTCTGGACATACAAACCTCGTA 57.286 45.455 0.00 0.00 0.00 3.43
22 23 5.068234 CTCTGGACATACAAACCTCGTAA 57.932 43.478 0.00 0.00 0.00 3.18
23 24 5.068234 TCTGGACATACAAACCTCGTAAG 57.932 43.478 0.00 0.00 0.00 2.34
43 44 8.971321 TCGTAAGATAATTAGCCGAATTACAAC 58.029 33.333 0.00 1.22 41.69 3.32
44 45 8.975439 CGTAAGATAATTAGCCGAATTACAACT 58.025 33.333 0.00 2.95 41.69 3.16
47 48 8.154649 AGATAATTAGCCGAATTACAACTTGG 57.845 34.615 0.00 0.00 41.69 3.61
48 49 7.990886 AGATAATTAGCCGAATTACAACTTGGA 59.009 33.333 0.00 0.00 41.69 3.53
49 50 6.827586 AATTAGCCGAATTACAACTTGGAA 57.172 33.333 0.00 0.00 35.91 3.53
50 51 5.873179 TTAGCCGAATTACAACTTGGAAG 57.127 39.130 0.00 0.00 0.00 3.46
51 52 3.081804 AGCCGAATTACAACTTGGAAGG 58.918 45.455 0.00 0.00 0.00 3.46
52 53 2.415491 GCCGAATTACAACTTGGAAGGC 60.415 50.000 0.85 0.85 0.00 4.35
53 54 3.081804 CCGAATTACAACTTGGAAGGCT 58.918 45.455 0.00 0.00 0.00 4.58
54 55 4.258543 CCGAATTACAACTTGGAAGGCTA 58.741 43.478 0.00 0.00 0.00 3.93
55 56 4.698304 CCGAATTACAACTTGGAAGGCTAA 59.302 41.667 0.00 0.00 0.00 3.09
56 57 5.163754 CCGAATTACAACTTGGAAGGCTAAG 60.164 44.000 0.00 0.00 38.45 2.18
57 58 5.642063 CGAATTACAACTTGGAAGGCTAAGA 59.358 40.000 2.62 0.00 36.25 2.10
58 59 6.148811 CGAATTACAACTTGGAAGGCTAAGAA 59.851 38.462 2.62 0.00 36.25 2.52
59 60 7.308348 CGAATTACAACTTGGAAGGCTAAGAAA 60.308 37.037 2.62 0.00 36.25 2.52
60 61 6.628919 TTACAACTTGGAAGGCTAAGAAAC 57.371 37.500 2.62 0.00 36.25 2.78
61 62 3.564225 ACAACTTGGAAGGCTAAGAAACG 59.436 43.478 2.62 0.00 36.25 3.60
62 63 3.764237 ACTTGGAAGGCTAAGAAACGA 57.236 42.857 2.62 0.00 36.25 3.85
63 64 4.287766 ACTTGGAAGGCTAAGAAACGAT 57.712 40.909 2.62 0.00 36.25 3.73
64 65 5.416271 ACTTGGAAGGCTAAGAAACGATA 57.584 39.130 2.62 0.00 36.25 2.92
65 66 5.801380 ACTTGGAAGGCTAAGAAACGATAA 58.199 37.500 2.62 0.00 36.25 1.75
66 67 5.875359 ACTTGGAAGGCTAAGAAACGATAAG 59.125 40.000 2.62 0.00 36.25 1.73
67 68 5.670792 TGGAAGGCTAAGAAACGATAAGA 57.329 39.130 0.00 0.00 0.00 2.10
68 69 6.045072 TGGAAGGCTAAGAAACGATAAGAA 57.955 37.500 0.00 0.00 0.00 2.52
69 70 6.469410 TGGAAGGCTAAGAAACGATAAGAAA 58.531 36.000 0.00 0.00 0.00 2.52
70 71 6.938030 TGGAAGGCTAAGAAACGATAAGAAAA 59.062 34.615 0.00 0.00 0.00 2.29
71 72 7.610305 TGGAAGGCTAAGAAACGATAAGAAAAT 59.390 33.333 0.00 0.00 0.00 1.82
72 73 9.106070 GGAAGGCTAAGAAACGATAAGAAAATA 57.894 33.333 0.00 0.00 0.00 1.40
93 94 8.887036 AAATAAACTGAGATTTGGACAAAACC 57.113 30.769 1.17 0.00 33.56 3.27
94 95 7.839680 ATAAACTGAGATTTGGACAAAACCT 57.160 32.000 1.17 2.68 33.56 3.50
95 96 5.774498 AACTGAGATTTGGACAAAACCTC 57.226 39.130 16.67 16.67 36.00 3.85
96 97 5.053978 ACTGAGATTTGGACAAAACCTCT 57.946 39.130 20.65 12.54 36.22 3.69
97 98 5.066593 ACTGAGATTTGGACAAAACCTCTC 58.933 41.667 20.65 18.06 35.82 3.20
98 99 4.398319 TGAGATTTGGACAAAACCTCTCC 58.602 43.478 20.65 8.97 35.04 3.71
99 100 4.104738 TGAGATTTGGACAAAACCTCTCCT 59.895 41.667 20.65 5.98 35.04 3.69
100 101 5.309543 TGAGATTTGGACAAAACCTCTCCTA 59.690 40.000 20.65 7.14 35.04 2.94
101 102 6.012508 TGAGATTTGGACAAAACCTCTCCTAT 60.013 38.462 20.65 0.00 35.04 2.57
102 103 6.183347 AGATTTGGACAAAACCTCTCCTATG 58.817 40.000 1.17 0.00 33.56 2.23
103 104 5.576563 TTTGGACAAAACCTCTCCTATGA 57.423 39.130 0.00 0.00 0.00 2.15
104 105 5.779241 TTGGACAAAACCTCTCCTATGAT 57.221 39.130 0.00 0.00 0.00 2.45
105 106 5.359194 TGGACAAAACCTCTCCTATGATC 57.641 43.478 0.00 0.00 0.00 2.92
106 107 4.782691 TGGACAAAACCTCTCCTATGATCA 59.217 41.667 0.00 0.00 0.00 2.92
107 108 5.429762 TGGACAAAACCTCTCCTATGATCAT 59.570 40.000 13.81 13.81 0.00 2.45
108 109 5.762218 GGACAAAACCTCTCCTATGATCATG 59.238 44.000 18.72 8.14 0.00 3.07
109 110 6.319048 ACAAAACCTCTCCTATGATCATGT 57.681 37.500 18.72 2.61 0.00 3.21
110 111 6.725364 ACAAAACCTCTCCTATGATCATGTT 58.275 36.000 18.72 8.77 0.00 2.71
111 112 7.177878 ACAAAACCTCTCCTATGATCATGTTT 58.822 34.615 18.72 13.93 0.00 2.83
112 113 7.671398 ACAAAACCTCTCCTATGATCATGTTTT 59.329 33.333 18.72 18.31 34.71 2.43
113 114 7.636150 AAACCTCTCCTATGATCATGTTTTG 57.364 36.000 18.72 5.06 0.00 2.44
114 115 6.319048 ACCTCTCCTATGATCATGTTTTGT 57.681 37.500 18.72 4.21 0.00 2.83
115 116 6.352516 ACCTCTCCTATGATCATGTTTTGTC 58.647 40.000 18.72 0.00 0.00 3.18
116 117 6.070021 ACCTCTCCTATGATCATGTTTTGTCA 60.070 38.462 18.72 0.00 0.00 3.58
185 186 7.997107 TTGTTCGATCGTGTAGCTTTATATT 57.003 32.000 15.94 0.00 0.00 1.28
191 192 8.996271 TCGATCGTGTAGCTTTATATTTAGAGA 58.004 33.333 15.94 0.00 0.00 3.10
220 221 6.430308 ACGAGAGTCTGTTTTGACAGATAGTA 59.570 38.462 11.89 0.00 46.81 1.82
239 240 8.373220 AGATAGTACCGGGGTTATCATTTTTAG 58.627 37.037 6.32 0.00 0.00 1.85
260 261 8.780846 TTTAGACTTGTTTAGTTCTGTGAACA 57.219 30.769 12.16 0.00 37.17 3.18
307 308 6.361433 TCATGTAACTCCTTGTTTCCTTCAA 58.639 36.000 0.00 0.00 39.89 2.69
310 311 6.126409 TGTAACTCCTTGTTTCCTTCAATGT 58.874 36.000 0.00 0.00 39.89 2.71
392 393 3.347216 TCTCATTAAAGGAGCAAGTGGC 58.653 45.455 3.31 0.00 45.30 5.01
419 420 3.243367 CGGGCATTTGAAACAAGTTGAGA 60.243 43.478 10.54 0.00 0.00 3.27
429 430 6.582636 TGAAACAAGTTGAGATACAGTCACT 58.417 36.000 10.54 0.00 0.00 3.41
457 458 7.452813 AGCTTTGGAAGTTTCTTTTGGAGATAT 59.547 33.333 0.00 0.00 33.49 1.63
507 508 1.906574 AGCTATCGGTTGAACCTTCCA 59.093 47.619 13.18 0.00 35.66 3.53
513 514 2.621055 TCGGTTGAACCTTCCAATGTTG 59.379 45.455 13.18 0.00 35.66 3.33
522 523 4.442706 ACCTTCCAATGTTGCTATCTACG 58.557 43.478 0.00 0.00 0.00 3.51
551 552 8.599624 AGAACAATATTCATCTCCCAATGTTT 57.400 30.769 0.00 0.00 0.00 2.83
565 566 0.527565 ATGTTTTGCTGACCATCCGC 59.472 50.000 0.00 0.00 0.00 5.54
569 571 2.192664 TTTGCTGACCATCCGCTAAA 57.807 45.000 0.00 0.00 0.00 1.85
571 573 1.667236 TGCTGACCATCCGCTAAATG 58.333 50.000 0.00 0.00 0.00 2.32
576 578 4.093998 GCTGACCATCCGCTAAATGATATG 59.906 45.833 0.00 0.00 0.00 1.78
578 580 3.347216 ACCATCCGCTAAATGATATGCC 58.653 45.455 0.00 0.00 0.00 4.40
592 594 2.032834 TGCCCGGCATTTACGTGT 59.967 55.556 8.43 0.00 31.71 4.49
593 595 1.601197 TGCCCGGCATTTACGTGTT 60.601 52.632 8.43 0.00 31.71 3.32
594 596 0.321387 TGCCCGGCATTTACGTGTTA 60.321 50.000 8.43 0.00 31.71 2.41
599 601 2.858344 CCGGCATTTACGTGTTAGAGAG 59.142 50.000 0.00 0.00 0.00 3.20
605 607 6.403615 GCATTTACGTGTTAGAGAGAAATCG 58.596 40.000 0.00 0.00 0.00 3.34
615 617 1.936547 GAGAGAAATCGTGGGCATCAC 59.063 52.381 0.00 0.00 42.74 3.06
633 635 2.665777 CGGATGACGCGTTGATTCT 58.334 52.632 15.53 0.00 34.82 2.40
636 638 2.271800 GGATGACGCGTTGATTCTCTT 58.728 47.619 15.53 0.00 0.00 2.85
637 639 3.444916 GGATGACGCGTTGATTCTCTTA 58.555 45.455 15.53 0.00 0.00 2.10
641 643 5.944049 TGACGCGTTGATTCTCTTAATAC 57.056 39.130 15.53 0.00 0.00 1.89
643 645 5.287752 TGACGCGTTGATTCTCTTAATACAC 59.712 40.000 15.53 0.00 0.00 2.90
644 646 5.408356 ACGCGTTGATTCTCTTAATACACT 58.592 37.500 5.58 0.00 0.00 3.55
645 647 6.558009 ACGCGTTGATTCTCTTAATACACTA 58.442 36.000 5.58 0.00 0.00 2.74
646 648 6.691818 ACGCGTTGATTCTCTTAATACACTAG 59.308 38.462 5.58 0.00 0.00 2.57
647 649 6.345093 CGCGTTGATTCTCTTAATACACTAGC 60.345 42.308 0.00 0.00 0.00 3.42
648 650 6.697892 GCGTTGATTCTCTTAATACACTAGCT 59.302 38.462 0.00 0.00 0.00 3.32
649 651 7.222999 GCGTTGATTCTCTTAATACACTAGCTT 59.777 37.037 0.00 0.00 0.00 3.74
650 652 8.535592 CGTTGATTCTCTTAATACACTAGCTTG 58.464 37.037 0.00 0.00 0.00 4.01
651 653 9.372369 GTTGATTCTCTTAATACACTAGCTTGT 57.628 33.333 0.00 0.00 0.00 3.16
652 654 9.944376 TTGATTCTCTTAATACACTAGCTTGTT 57.056 29.630 0.00 0.00 0.00 2.83
664 666 7.287050 ACACTAGCTTGTTAACTAATAACGC 57.713 36.000 7.22 0.00 45.72 4.84
665 667 6.312180 ACACTAGCTTGTTAACTAATAACGCC 59.688 38.462 7.22 0.00 45.72 5.68
666 668 4.852609 AGCTTGTTAACTAATAACGCCG 57.147 40.909 7.22 0.00 45.72 6.46
667 669 4.497300 AGCTTGTTAACTAATAACGCCGA 58.503 39.130 7.22 0.00 45.72 5.54
669 671 5.017612 GCTTGTTAACTAATAACGCCGAAC 58.982 41.667 7.22 0.00 45.72 3.95
670 672 5.163923 GCTTGTTAACTAATAACGCCGAACT 60.164 40.000 7.22 0.00 45.72 3.01
671 673 6.034898 GCTTGTTAACTAATAACGCCGAACTA 59.965 38.462 7.22 0.00 45.72 2.24
672 674 7.411804 GCTTGTTAACTAATAACGCCGAACTAA 60.412 37.037 7.22 0.00 45.72 2.24
673 675 7.276953 TGTTAACTAATAACGCCGAACTAAC 57.723 36.000 7.22 0.00 45.72 2.34
674 676 6.865726 TGTTAACTAATAACGCCGAACTAACA 59.134 34.615 7.22 0.00 45.72 2.41
675 677 5.768333 AACTAATAACGCCGAACTAACAC 57.232 39.130 0.00 0.00 0.00 3.32
676 678 4.808558 ACTAATAACGCCGAACTAACACA 58.191 39.130 0.00 0.00 0.00 3.72
677 679 4.622740 ACTAATAACGCCGAACTAACACAC 59.377 41.667 0.00 0.00 0.00 3.82
678 680 2.798976 TAACGCCGAACTAACACACT 57.201 45.000 0.00 0.00 0.00 3.55
679 681 2.798976 AACGCCGAACTAACACACTA 57.201 45.000 0.00 0.00 0.00 2.74
680 682 3.308438 AACGCCGAACTAACACACTAT 57.692 42.857 0.00 0.00 0.00 2.12
682 684 1.844357 CGCCGAACTAACACACTATCG 59.156 52.381 0.00 0.00 0.00 2.92
684 686 3.703420 GCCGAACTAACACACTATCGAT 58.297 45.455 2.16 2.16 32.38 3.59
685 687 4.110482 GCCGAACTAACACACTATCGATT 58.890 43.478 1.71 0.00 32.38 3.34
687 689 4.026804 CCGAACTAACACACTATCGATTGC 60.027 45.833 1.71 0.00 32.38 3.56
688 690 4.798907 CGAACTAACACACTATCGATTGCT 59.201 41.667 1.71 0.00 32.38 3.91
689 691 5.275927 CGAACTAACACACTATCGATTGCTG 60.276 44.000 1.71 5.63 32.38 4.41
690 692 4.433615 ACTAACACACTATCGATTGCTGG 58.566 43.478 1.71 0.00 0.00 4.85
691 693 1.656652 ACACACTATCGATTGCTGGC 58.343 50.000 1.71 0.00 0.00 4.85
692 694 0.940126 CACACTATCGATTGCTGGCC 59.060 55.000 1.71 0.00 0.00 5.36
705 736 3.251479 TGCTGGCCATCATATCGTATC 57.749 47.619 5.51 0.00 0.00 2.24
706 737 2.566724 TGCTGGCCATCATATCGTATCA 59.433 45.455 5.51 0.00 0.00 2.15
707 738 3.007831 TGCTGGCCATCATATCGTATCAA 59.992 43.478 5.51 0.00 0.00 2.57
710 741 5.164620 TGGCCATCATATCGTATCAATGT 57.835 39.130 0.00 0.00 0.00 2.71
711 742 5.559770 TGGCCATCATATCGTATCAATGTT 58.440 37.500 0.00 0.00 0.00 2.71
712 743 6.003326 TGGCCATCATATCGTATCAATGTTT 58.997 36.000 0.00 0.00 0.00 2.83
713 744 6.489700 TGGCCATCATATCGTATCAATGTTTT 59.510 34.615 0.00 0.00 0.00 2.43
714 745 7.663493 TGGCCATCATATCGTATCAATGTTTTA 59.337 33.333 0.00 0.00 0.00 1.52
715 746 8.511321 GGCCATCATATCGTATCAATGTTTTAA 58.489 33.333 0.00 0.00 0.00 1.52
716 747 9.891828 GCCATCATATCGTATCAATGTTTTAAA 57.108 29.630 0.00 0.00 0.00 1.52
724 755 7.414436 TCGTATCAATGTTTTAAATAGCAGGC 58.586 34.615 0.00 0.00 0.00 4.85
725 756 7.282224 TCGTATCAATGTTTTAAATAGCAGGCT 59.718 33.333 0.00 0.00 0.00 4.58
726 757 8.556194 CGTATCAATGTTTTAAATAGCAGGCTA 58.444 33.333 3.11 3.11 0.00 3.93
729 760 7.715657 TCAATGTTTTAAATAGCAGGCTATGG 58.284 34.615 14.10 0.00 39.03 2.74
730 761 7.559533 TCAATGTTTTAAATAGCAGGCTATGGA 59.440 33.333 14.10 3.36 39.03 3.41
731 762 7.896383 ATGTTTTAAATAGCAGGCTATGGAA 57.104 32.000 14.10 8.79 39.03 3.53
732 763 7.710676 TGTTTTAAATAGCAGGCTATGGAAA 57.289 32.000 14.10 13.43 39.03 3.13
733 764 8.128322 TGTTTTAAATAGCAGGCTATGGAAAA 57.872 30.769 14.10 17.44 39.03 2.29
734 765 8.757877 TGTTTTAAATAGCAGGCTATGGAAAAT 58.242 29.630 22.82 6.17 39.03 1.82
737 768 6.581171 AAATAGCAGGCTATGGAAAATAGC 57.419 37.500 14.10 8.52 44.56 2.97
738 769 2.498167 AGCAGGCTATGGAAAATAGCG 58.502 47.619 10.37 0.97 45.83 4.26
739 770 1.537202 GCAGGCTATGGAAAATAGCGG 59.463 52.381 10.37 7.10 45.83 5.52
740 771 1.537202 CAGGCTATGGAAAATAGCGGC 59.463 52.381 10.37 0.00 45.83 6.53
741 772 0.517316 GGCTATGGAAAATAGCGGCG 59.483 55.000 0.51 0.51 45.83 6.46
742 773 1.508632 GCTATGGAAAATAGCGGCGA 58.491 50.000 12.98 0.00 37.79 5.54
743 774 1.461127 GCTATGGAAAATAGCGGCGAG 59.539 52.381 12.98 0.00 37.79 5.03
754 785 4.069232 CGGCGAGCCTCCAACTCA 62.069 66.667 12.70 0.00 33.58 3.41
755 786 2.125350 GGCGAGCCTCCAACTCAG 60.125 66.667 6.90 0.00 33.58 3.35
756 787 2.817396 GCGAGCCTCCAACTCAGC 60.817 66.667 0.00 0.00 33.58 4.26
757 788 2.977178 CGAGCCTCCAACTCAGCT 59.023 61.111 0.00 0.00 38.56 4.24
758 789 1.949847 GCGAGCCTCCAACTCAGCTA 61.950 60.000 0.00 0.00 35.23 3.32
759 790 0.749649 CGAGCCTCCAACTCAGCTAT 59.250 55.000 0.00 0.00 35.23 2.97
760 791 1.957177 CGAGCCTCCAACTCAGCTATA 59.043 52.381 0.00 0.00 35.23 1.31
761 792 2.030363 CGAGCCTCCAACTCAGCTATAG 60.030 54.545 0.00 0.00 35.23 1.31
762 793 1.691434 AGCCTCCAACTCAGCTATAGC 59.309 52.381 17.33 17.33 42.49 2.97
773 804 2.446341 GCTATAGCGGGCTAAAGCG 58.554 57.895 9.40 0.00 43.26 4.68
774 805 1.014564 GCTATAGCGGGCTAAAGCGG 61.015 60.000 9.40 0.00 43.26 5.52
775 806 0.389948 CTATAGCGGGCTAAAGCGGG 60.390 60.000 4.26 0.00 43.26 6.13
776 807 2.444700 TATAGCGGGCTAAAGCGGGC 62.445 60.000 4.26 7.54 43.26 6.13
778 809 4.540735 GCGGGCTAAAGCGGGCTA 62.541 66.667 8.17 0.00 43.26 3.93
779 810 2.426023 CGGGCTAAAGCGGGCTAT 59.574 61.111 0.00 0.00 43.26 2.97
780 811 1.227853 CGGGCTAAAGCGGGCTATT 60.228 57.895 0.00 0.00 43.26 1.73
781 812 0.818040 CGGGCTAAAGCGGGCTATTT 60.818 55.000 0.00 0.00 43.26 1.40
782 813 0.668535 GGGCTAAAGCGGGCTATTTG 59.331 55.000 0.00 0.00 43.26 2.32
783 814 1.389555 GGCTAAAGCGGGCTATTTGT 58.610 50.000 0.00 0.00 43.26 2.83
784 815 1.065551 GGCTAAAGCGGGCTATTTGTG 59.934 52.381 0.00 0.00 43.26 3.33
785 816 2.014128 GCTAAAGCGGGCTATTTGTGA 58.986 47.619 0.00 0.00 0.00 3.58
786 817 2.422127 GCTAAAGCGGGCTATTTGTGAA 59.578 45.455 0.00 0.00 0.00 3.18
787 818 3.487544 GCTAAAGCGGGCTATTTGTGAAG 60.488 47.826 0.00 0.00 0.00 3.02
788 819 1.463674 AAGCGGGCTATTTGTGAAGG 58.536 50.000 0.00 0.00 0.00 3.46
789 820 1.032114 AGCGGGCTATTTGTGAAGGC 61.032 55.000 0.00 0.00 37.55 4.35
790 821 1.721487 CGGGCTATTTGTGAAGGCG 59.279 57.895 0.00 0.00 39.08 5.52
791 822 0.742990 CGGGCTATTTGTGAAGGCGA 60.743 55.000 0.00 0.00 39.08 5.54
792 823 0.733150 GGGCTATTTGTGAAGGCGAC 59.267 55.000 0.00 0.00 39.08 5.19
793 824 0.733150 GGCTATTTGTGAAGGCGACC 59.267 55.000 0.00 0.00 0.00 4.79
794 825 1.448985 GCTATTTGTGAAGGCGACCA 58.551 50.000 0.00 0.00 0.00 4.02
795 826 2.017049 GCTATTTGTGAAGGCGACCAT 58.983 47.619 0.00 0.00 0.00 3.55
796 827 2.423538 GCTATTTGTGAAGGCGACCATT 59.576 45.455 0.00 0.00 0.00 3.16
797 828 3.119495 GCTATTTGTGAAGGCGACCATTT 60.119 43.478 0.00 0.00 0.00 2.32
798 829 4.095782 GCTATTTGTGAAGGCGACCATTTA 59.904 41.667 0.00 0.00 0.00 1.40
799 830 4.701956 ATTTGTGAAGGCGACCATTTAG 57.298 40.909 0.00 0.00 0.00 1.85
800 831 1.448985 TGTGAAGGCGACCATTTAGC 58.551 50.000 0.00 0.00 0.00 3.09
801 832 0.373716 GTGAAGGCGACCATTTAGCG 59.626 55.000 0.00 0.00 0.00 4.26
802 833 0.742990 TGAAGGCGACCATTTAGCGG 60.743 55.000 0.00 0.00 0.00 5.52
805 836 2.403586 GCGACCATTTAGCGGCAC 59.596 61.111 1.45 0.00 0.00 5.01
806 837 3.098555 CGACCATTTAGCGGCACC 58.901 61.111 1.45 0.00 0.00 5.01
807 838 2.469516 CGACCATTTAGCGGCACCC 61.470 63.158 1.45 0.00 0.00 4.61
808 839 1.077716 GACCATTTAGCGGCACCCT 60.078 57.895 1.45 0.00 0.00 4.34
809 840 0.179468 GACCATTTAGCGGCACCCTA 59.821 55.000 1.45 0.00 0.00 3.53
810 841 0.107361 ACCATTTAGCGGCACCCTAC 60.107 55.000 1.45 0.00 0.00 3.18
811 842 0.180406 CCATTTAGCGGCACCCTACT 59.820 55.000 1.45 0.00 0.00 2.57
812 843 1.299541 CATTTAGCGGCACCCTACTG 58.700 55.000 1.45 0.00 0.00 2.74
813 844 1.134521 CATTTAGCGGCACCCTACTGA 60.135 52.381 1.45 0.00 0.00 3.41
814 845 0.978151 TTTAGCGGCACCCTACTGAA 59.022 50.000 1.45 0.00 0.00 3.02
815 846 0.978151 TTAGCGGCACCCTACTGAAA 59.022 50.000 1.45 0.00 0.00 2.69
816 847 0.978151 TAGCGGCACCCTACTGAAAA 59.022 50.000 1.45 0.00 0.00 2.29
817 848 0.321653 AGCGGCACCCTACTGAAAAG 60.322 55.000 1.45 0.00 0.00 2.27
818 849 1.305930 GCGGCACCCTACTGAAAAGG 61.306 60.000 0.00 0.00 0.00 3.11
819 850 1.305930 CGGCACCCTACTGAAAAGGC 61.306 60.000 0.00 0.00 32.34 4.35
820 851 0.038310 GGCACCCTACTGAAAAGGCT 59.962 55.000 0.00 0.00 32.34 4.58
821 852 1.280998 GGCACCCTACTGAAAAGGCTA 59.719 52.381 0.00 0.00 32.34 3.93
822 853 2.092375 GGCACCCTACTGAAAAGGCTAT 60.092 50.000 0.00 0.00 32.34 2.97
823 854 3.135895 GGCACCCTACTGAAAAGGCTATA 59.864 47.826 0.00 0.00 32.34 1.31
824 855 4.381411 GCACCCTACTGAAAAGGCTATAG 58.619 47.826 0.00 0.00 32.34 1.31
825 856 4.381411 CACCCTACTGAAAAGGCTATAGC 58.619 47.826 16.78 16.78 41.14 2.97
826 857 3.069729 ACCCTACTGAAAAGGCTATAGCG 59.930 47.826 18.30 5.39 43.26 4.26
827 858 3.555168 CCCTACTGAAAAGGCTATAGCGG 60.555 52.174 18.30 9.42 43.26 5.52
828 859 3.321111 CCTACTGAAAAGGCTATAGCGGA 59.679 47.826 18.30 0.00 43.26 5.54
829 860 3.460857 ACTGAAAAGGCTATAGCGGAG 57.539 47.619 18.30 9.50 43.26 4.63
830 861 2.103263 ACTGAAAAGGCTATAGCGGAGG 59.897 50.000 18.30 7.23 43.26 4.30
831 862 2.103263 CTGAAAAGGCTATAGCGGAGGT 59.897 50.000 18.30 2.65 43.26 3.85
845 876 3.672767 CGGAGGTATAACCGGCTATTT 57.327 47.619 0.00 0.00 44.90 1.40
846 877 4.789012 CGGAGGTATAACCGGCTATTTA 57.211 45.455 0.00 0.00 44.90 1.40
847 878 5.138125 CGGAGGTATAACCGGCTATTTAA 57.862 43.478 0.00 0.00 44.90 1.52
848 879 5.540911 CGGAGGTATAACCGGCTATTTAAA 58.459 41.667 0.00 0.00 44.90 1.52
849 880 5.990996 CGGAGGTATAACCGGCTATTTAAAA 59.009 40.000 0.00 0.00 44.90 1.52
850 881 6.073602 CGGAGGTATAACCGGCTATTTAAAAC 60.074 42.308 0.00 0.00 44.90 2.43
851 882 6.994496 GGAGGTATAACCGGCTATTTAAAACT 59.006 38.462 0.00 0.00 44.90 2.66
852 883 8.150296 GGAGGTATAACCGGCTATTTAAAACTA 58.850 37.037 0.00 0.00 44.90 2.24
853 884 9.716531 GAGGTATAACCGGCTATTTAAAACTAT 57.283 33.333 0.00 0.00 44.90 2.12
854 885 9.498176 AGGTATAACCGGCTATTTAAAACTATG 57.502 33.333 0.00 0.00 44.90 2.23
855 886 9.276590 GGTATAACCGGCTATTTAAAACTATGT 57.723 33.333 0.00 0.00 0.00 2.29
859 890 8.967664 AACCGGCTATTTAAAACTATGTATCA 57.032 30.769 0.00 0.00 0.00 2.15
860 891 9.569122 AACCGGCTATTTAAAACTATGTATCAT 57.431 29.630 0.00 0.00 0.00 2.45
869 900 9.877137 TTTAAAACTATGTATCATATGCGCAAG 57.123 29.630 17.11 7.99 43.44 4.01
903 934 4.030452 GCAGGAGCACGTGTTGGC 62.030 66.667 18.38 10.68 41.58 4.52
909 940 4.622456 GCACGTGTTGGCCGTTGG 62.622 66.667 18.38 0.00 36.17 3.77
918 949 2.007608 GTTGGCCGTTGGTATTCTCTC 58.992 52.381 0.00 0.00 0.00 3.20
923 954 2.957006 GCCGTTGGTATTCTCTCCTCTA 59.043 50.000 0.00 0.00 0.00 2.43
925 956 4.321378 GCCGTTGGTATTCTCTCCTCTATC 60.321 50.000 0.00 0.00 0.00 2.08
939 972 7.461363 TCTCTCCTCTATCCATATAGTGTACCA 59.539 40.741 0.00 0.00 37.06 3.25
941 974 6.178324 TCCTCTATCCATATAGTGTACCACG 58.822 44.000 0.00 0.00 39.64 4.94
958 991 2.413112 CCACGCCAGCTATATTTCATCG 59.587 50.000 0.00 0.00 0.00 3.84
963 996 4.627035 CGCCAGCTATATTTCATCGATCAA 59.373 41.667 0.00 0.00 0.00 2.57
966 999 5.352569 CCAGCTATATTTCATCGATCAACCC 59.647 44.000 0.00 0.00 0.00 4.11
976 1009 3.553828 TCGATCAACCCCCAACTAATC 57.446 47.619 0.00 0.00 0.00 1.75
977 1010 2.171870 TCGATCAACCCCCAACTAATCC 59.828 50.000 0.00 0.00 0.00 3.01
980 1013 2.354328 TCAACCCCCAACTAATCCACT 58.646 47.619 0.00 0.00 0.00 4.00
981 1014 3.533146 TCAACCCCCAACTAATCCACTA 58.467 45.455 0.00 0.00 0.00 2.74
982 1015 4.116113 TCAACCCCCAACTAATCCACTAT 58.884 43.478 0.00 0.00 0.00 2.12
984 1017 3.743132 ACCCCCAACTAATCCACTATCA 58.257 45.455 0.00 0.00 0.00 2.15
986 1019 4.166144 ACCCCCAACTAATCCACTATCAAG 59.834 45.833 0.00 0.00 0.00 3.02
987 1020 4.412199 CCCCCAACTAATCCACTATCAAGA 59.588 45.833 0.00 0.00 0.00 3.02
988 1021 5.073691 CCCCCAACTAATCCACTATCAAGAT 59.926 44.000 0.00 0.00 0.00 2.40
989 1022 6.410853 CCCCCAACTAATCCACTATCAAGATT 60.411 42.308 0.00 0.00 34.68 2.40
990 1023 6.712547 CCCCAACTAATCCACTATCAAGATTC 59.287 42.308 0.00 0.00 32.64 2.52
991 1024 7.282585 CCCAACTAATCCACTATCAAGATTCA 58.717 38.462 0.00 0.00 32.64 2.57
994 1033 8.706936 CAACTAATCCACTATCAAGATTCATCG 58.293 37.037 0.00 0.00 32.64 3.84
1159 1198 4.649705 TCCTCCGCTCCAACCCCA 62.650 66.667 0.00 0.00 0.00 4.96
1246 1285 0.248949 GTACATCGACGAGGCCTTCC 60.249 60.000 6.77 0.00 0.00 3.46
1320 1359 1.079127 CTTCTGGGCCACCTACGTG 60.079 63.158 0.00 0.00 39.91 4.49
1372 1411 1.291877 CTTGAGGGCAAAGACGGACG 61.292 60.000 0.00 0.00 32.73 4.79
1456 1495 0.251386 AGTGAGGGAGTGCTCGAAGA 60.251 55.000 0.00 0.00 0.00 2.87
1501 1540 2.105466 GTCGGCTACCTCGACGTCT 61.105 63.158 14.70 0.00 45.53 4.18
1506 1545 0.109226 GCTACCTCGACGTCTTGCTT 60.109 55.000 14.70 0.00 0.00 3.91
1742 1785 1.001760 GAGACCTGCTCCCCTGGTA 59.998 63.158 0.00 0.00 44.80 3.25
1768 1811 6.839124 TGTCTATTTGCATGTCCATTTTCT 57.161 33.333 0.00 0.00 0.00 2.52
1779 1846 7.599621 TGCATGTCCATTTTCTTGTATTTCTTG 59.400 33.333 0.00 0.00 0.00 3.02
1799 1866 3.950397 TGTAATGAAAGTAGCAGGGTGG 58.050 45.455 0.00 0.00 0.00 4.61
1811 1878 2.117206 GGGTGGCCCACATGTCAA 59.883 61.111 17.22 0.00 44.65 3.18
1812 1879 1.305213 GGGTGGCCCACATGTCAAT 60.305 57.895 17.22 0.00 44.65 2.57
1813 1880 0.033601 GGGTGGCCCACATGTCAATA 60.034 55.000 17.22 0.00 44.65 1.90
1814 1881 1.618345 GGGTGGCCCACATGTCAATAA 60.618 52.381 17.22 0.00 44.65 1.40
1815 1882 2.387757 GGTGGCCCACATGTCAATAAT 58.612 47.619 17.22 0.00 35.86 1.28
1816 1883 2.101249 GGTGGCCCACATGTCAATAATG 59.899 50.000 17.22 0.00 35.86 1.90
1817 1884 1.755959 TGGCCCACATGTCAATAATGC 59.244 47.619 0.00 0.00 0.00 3.56
1818 1885 2.034124 GGCCCACATGTCAATAATGCT 58.966 47.619 0.00 0.00 0.00 3.79
1819 1886 3.221771 GGCCCACATGTCAATAATGCTA 58.778 45.455 0.00 0.00 0.00 3.49
1820 1887 3.636300 GGCCCACATGTCAATAATGCTAA 59.364 43.478 0.00 0.00 0.00 3.09
1821 1888 4.099266 GGCCCACATGTCAATAATGCTAAA 59.901 41.667 0.00 0.00 0.00 1.85
1822 1889 5.043248 GCCCACATGTCAATAATGCTAAAC 58.957 41.667 0.00 0.00 0.00 2.01
1823 1890 5.394005 GCCCACATGTCAATAATGCTAAACA 60.394 40.000 0.00 0.00 0.00 2.83
1824 1891 6.683610 GCCCACATGTCAATAATGCTAAACAT 60.684 38.462 0.00 0.00 42.30 2.71
1825 1892 6.698329 CCCACATGTCAATAATGCTAAACATG 59.302 38.462 10.75 10.75 45.83 3.21
1826 1893 6.199531 CCACATGTCAATAATGCTAAACATGC 59.800 38.462 11.93 0.00 44.81 4.06
1827 1894 6.752815 CACATGTCAATAATGCTAAACATGCA 59.247 34.615 11.93 0.00 44.81 3.96
1828 1895 7.275999 CACATGTCAATAATGCTAAACATGCAA 59.724 33.333 11.93 0.00 44.81 4.08
1829 1896 7.818446 ACATGTCAATAATGCTAAACATGCAAA 59.182 29.630 11.93 0.00 44.81 3.68
1830 1897 7.815398 TGTCAATAATGCTAAACATGCAAAG 57.185 32.000 0.00 0.00 44.01 2.77
1831 1898 6.812656 TGTCAATAATGCTAAACATGCAAAGG 59.187 34.615 0.00 0.00 44.01 3.11
1832 1899 6.813152 GTCAATAATGCTAAACATGCAAAGGT 59.187 34.615 0.00 0.00 44.01 3.50
1833 1900 7.331687 GTCAATAATGCTAAACATGCAAAGGTT 59.668 33.333 0.00 0.00 44.01 3.50
1834 1901 7.877097 TCAATAATGCTAAACATGCAAAGGTTT 59.123 29.630 15.71 15.71 44.01 3.27
1835 1902 9.149225 CAATAATGCTAAACATGCAAAGGTTTA 57.851 29.630 16.12 16.12 44.01 2.01
1836 1903 9.889128 AATAATGCTAAACATGCAAAGGTTTAT 57.111 25.926 16.90 8.87 44.01 1.40
1837 1904 7.832503 AATGCTAAACATGCAAAGGTTTATC 57.167 32.000 16.90 14.48 44.01 1.75
1838 1905 6.588719 TGCTAAACATGCAAAGGTTTATCT 57.411 33.333 16.90 1.27 38.41 1.98
1839 1906 6.991938 TGCTAAACATGCAAAGGTTTATCTT 58.008 32.000 16.90 0.99 38.41 2.40
1840 1907 7.441017 TGCTAAACATGCAAAGGTTTATCTTT 58.559 30.769 16.90 0.00 38.41 2.52
1841 1908 7.930865 TGCTAAACATGCAAAGGTTTATCTTTT 59.069 29.630 16.90 1.14 38.41 2.27
1842 1909 8.435430 GCTAAACATGCAAAGGTTTATCTTTTC 58.565 33.333 16.90 0.00 38.41 2.29
1843 1910 9.474920 CTAAACATGCAAAGGTTTATCTTTTCA 57.525 29.630 16.90 0.00 38.41 2.69
1844 1911 8.729805 AAACATGCAAAGGTTTATCTTTTCAA 57.270 26.923 11.38 0.00 34.63 2.69
1845 1912 8.729805 AACATGCAAAGGTTTATCTTTTCAAA 57.270 26.923 0.00 0.00 34.63 2.69
1846 1913 8.141835 ACATGCAAAGGTTTATCTTTTCAAAC 57.858 30.769 0.00 0.00 34.63 2.93
1847 1914 7.986889 ACATGCAAAGGTTTATCTTTTCAAACT 59.013 29.630 0.00 0.00 34.63 2.66
1848 1915 9.474920 CATGCAAAGGTTTATCTTTTCAAACTA 57.525 29.630 0.00 0.00 34.63 2.24
1850 1917 9.308318 TGCAAAGGTTTATCTTTTCAAACTAAC 57.692 29.630 0.00 0.00 35.04 2.34
1851 1918 9.529325 GCAAAGGTTTATCTTTTCAAACTAACT 57.471 29.630 0.00 0.00 35.04 2.24
1860 1927 8.850007 ATCTTTTCAAACTAACTAACCTCTCC 57.150 34.615 0.00 0.00 0.00 3.71
1861 1928 7.222161 TCTTTTCAAACTAACTAACCTCTCCC 58.778 38.462 0.00 0.00 0.00 4.30
1862 1929 5.494390 TTCAAACTAACTAACCTCTCCCC 57.506 43.478 0.00 0.00 0.00 4.81
1863 1930 3.842436 TCAAACTAACTAACCTCTCCCCC 59.158 47.826 0.00 0.00 0.00 5.40
1864 1931 3.844804 CAAACTAACTAACCTCTCCCCCT 59.155 47.826 0.00 0.00 0.00 4.79
1865 1932 3.117552 ACTAACTAACCTCTCCCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
1866 1933 2.658489 ACTAACTAACCTCTCCCCCTGA 59.342 50.000 0.00 0.00 0.00 3.86
1867 1934 2.972153 AACTAACCTCTCCCCCTGAT 57.028 50.000 0.00 0.00 0.00 2.90
1868 1935 2.972153 ACTAACCTCTCCCCCTGATT 57.028 50.000 0.00 0.00 0.00 2.57
1869 1936 3.222394 ACTAACCTCTCCCCCTGATTT 57.778 47.619 0.00 0.00 0.00 2.17
1870 1937 3.542604 ACTAACCTCTCCCCCTGATTTT 58.457 45.455 0.00 0.00 0.00 1.82
1871 1938 3.523972 ACTAACCTCTCCCCCTGATTTTC 59.476 47.826 0.00 0.00 0.00 2.29
1872 1939 2.059756 ACCTCTCCCCCTGATTTTCA 57.940 50.000 0.00 0.00 0.00 2.69
1873 1940 2.577970 ACCTCTCCCCCTGATTTTCAT 58.422 47.619 0.00 0.00 0.00 2.57
1874 1941 2.243221 ACCTCTCCCCCTGATTTTCATG 59.757 50.000 0.00 0.00 0.00 3.07
1875 1942 2.423947 CCTCTCCCCCTGATTTTCATGG 60.424 54.545 0.00 0.00 32.74 3.66
1878 1945 3.228939 CCCCTGATTTTCATGGGGG 57.771 57.895 16.98 12.41 45.29 5.40
1879 1946 0.339510 CCCCTGATTTTCATGGGGGT 59.660 55.000 16.98 0.00 45.29 4.95
1880 1947 1.488390 CCCTGATTTTCATGGGGGTG 58.512 55.000 0.00 0.00 33.76 4.61
1881 1948 1.488390 CCTGATTTTCATGGGGGTGG 58.512 55.000 0.00 0.00 0.00 4.61
1882 1949 0.826062 CTGATTTTCATGGGGGTGGC 59.174 55.000 0.00 0.00 0.00 5.01
1883 1950 0.617249 TGATTTTCATGGGGGTGGCC 60.617 55.000 0.00 0.00 0.00 5.36
1884 1951 1.306911 ATTTTCATGGGGGTGGCCC 60.307 57.895 0.00 0.00 44.51 5.80
1896 1963 4.301662 TGGCCCCTTCTCCCCCTT 62.302 66.667 0.00 0.00 0.00 3.95
1897 1964 2.043941 GGCCCCTTCTCCCCCTTA 59.956 66.667 0.00 0.00 0.00 2.69
1898 1965 1.621514 GGCCCCTTCTCCCCCTTAA 60.622 63.158 0.00 0.00 0.00 1.85
1899 1966 0.999493 GGCCCCTTCTCCCCCTTAAT 60.999 60.000 0.00 0.00 0.00 1.40
1900 1967 0.478942 GCCCCTTCTCCCCCTTAATC 59.521 60.000 0.00 0.00 0.00 1.75
1901 1968 1.982261 GCCCCTTCTCCCCCTTAATCT 60.982 57.143 0.00 0.00 0.00 2.40
1902 1969 2.058705 CCCCTTCTCCCCCTTAATCTC 58.941 57.143 0.00 0.00 0.00 2.75
1903 1970 2.058705 CCCTTCTCCCCCTTAATCTCC 58.941 57.143 0.00 0.00 0.00 3.71
1904 1971 2.632360 CCCTTCTCCCCCTTAATCTCCA 60.632 54.545 0.00 0.00 0.00 3.86
1905 1972 3.123273 CCTTCTCCCCCTTAATCTCCAA 58.877 50.000 0.00 0.00 0.00 3.53
1906 1973 3.724209 CCTTCTCCCCCTTAATCTCCAAT 59.276 47.826 0.00 0.00 0.00 3.16
1907 1974 4.202514 CCTTCTCCCCCTTAATCTCCAATC 60.203 50.000 0.00 0.00 0.00 2.67
1908 1975 4.021007 TCTCCCCCTTAATCTCCAATCA 57.979 45.455 0.00 0.00 0.00 2.57
1909 1976 4.379875 TCTCCCCCTTAATCTCCAATCAA 58.620 43.478 0.00 0.00 0.00 2.57
1910 1977 4.793520 TCTCCCCCTTAATCTCCAATCAAA 59.206 41.667 0.00 0.00 0.00 2.69
1911 1978 5.255207 TCTCCCCCTTAATCTCCAATCAAAA 59.745 40.000 0.00 0.00 0.00 2.44
1912 1979 5.269189 TCCCCCTTAATCTCCAATCAAAAC 58.731 41.667 0.00 0.00 0.00 2.43
1913 1980 4.405680 CCCCCTTAATCTCCAATCAAAACC 59.594 45.833 0.00 0.00 0.00 3.27
1914 1981 4.405680 CCCCTTAATCTCCAATCAAAACCC 59.594 45.833 0.00 0.00 0.00 4.11
1915 1982 5.022787 CCCTTAATCTCCAATCAAAACCCA 58.977 41.667 0.00 0.00 0.00 4.51
1916 1983 5.105351 CCCTTAATCTCCAATCAAAACCCAC 60.105 44.000 0.00 0.00 0.00 4.61
1917 1984 5.105351 CCTTAATCTCCAATCAAAACCCACC 60.105 44.000 0.00 0.00 0.00 4.61
1918 1985 3.833559 ATCTCCAATCAAAACCCACCT 57.166 42.857 0.00 0.00 0.00 4.00
1919 1986 3.611025 TCTCCAATCAAAACCCACCTT 57.389 42.857 0.00 0.00 0.00 3.50
1920 1987 3.922375 TCTCCAATCAAAACCCACCTTT 58.078 40.909 0.00 0.00 0.00 3.11
1921 1988 5.068215 TCTCCAATCAAAACCCACCTTTA 57.932 39.130 0.00 0.00 0.00 1.85
1922 1989 5.650283 TCTCCAATCAAAACCCACCTTTAT 58.350 37.500 0.00 0.00 0.00 1.40
1923 1990 5.480073 TCTCCAATCAAAACCCACCTTTATG 59.520 40.000 0.00 0.00 0.00 1.90
1924 1991 5.151454 TCCAATCAAAACCCACCTTTATGT 58.849 37.500 0.00 0.00 0.00 2.29
1925 1992 6.315714 TCCAATCAAAACCCACCTTTATGTA 58.684 36.000 0.00 0.00 0.00 2.29
1926 1993 6.782988 TCCAATCAAAACCCACCTTTATGTAA 59.217 34.615 0.00 0.00 0.00 2.41
1927 1994 7.290248 TCCAATCAAAACCCACCTTTATGTAAA 59.710 33.333 0.00 0.00 0.00 2.01
1928 1995 7.934120 CCAATCAAAACCCACCTTTATGTAAAA 59.066 33.333 0.00 0.00 0.00 1.52
1929 1996 8.987890 CAATCAAAACCCACCTTTATGTAAAAG 58.012 33.333 0.00 0.00 0.00 2.27
1930 1997 6.517605 TCAAAACCCACCTTTATGTAAAAGC 58.482 36.000 0.00 0.00 0.00 3.51
1931 1998 6.098409 TCAAAACCCACCTTTATGTAAAAGCA 59.902 34.615 0.00 0.00 0.00 3.91
1932 1999 6.680148 AAACCCACCTTTATGTAAAAGCAT 57.320 33.333 0.00 0.00 0.00 3.79
1933 2000 5.659440 ACCCACCTTTATGTAAAAGCATG 57.341 39.130 0.00 0.00 0.00 4.06
1934 2001 5.083821 ACCCACCTTTATGTAAAAGCATGT 58.916 37.500 0.00 0.00 0.00 3.21
1935 2002 6.249951 ACCCACCTTTATGTAAAAGCATGTA 58.750 36.000 0.00 0.00 0.00 2.29
1936 2003 6.895204 ACCCACCTTTATGTAAAAGCATGTAT 59.105 34.615 0.00 0.00 0.00 2.29
1937 2004 7.068226 ACCCACCTTTATGTAAAAGCATGTATC 59.932 37.037 0.00 0.00 0.00 2.24
1938 2005 7.425606 CCACCTTTATGTAAAAGCATGTATCC 58.574 38.462 0.00 0.00 0.00 2.59
1939 2006 7.285401 CCACCTTTATGTAAAAGCATGTATCCT 59.715 37.037 0.00 0.00 0.00 3.24
1940 2007 8.686334 CACCTTTATGTAAAAGCATGTATCCTT 58.314 33.333 0.00 0.00 0.00 3.36
1941 2008 9.255029 ACCTTTATGTAAAAGCATGTATCCTTT 57.745 29.630 0.00 0.00 32.98 3.11
1947 2014 7.523219 TGTAAAAGCATGTATCCTTTTGTACG 58.477 34.615 15.10 0.00 34.60 3.67
1948 2015 6.569179 AAAAGCATGTATCCTTTTGTACGT 57.431 33.333 7.67 0.00 34.60 3.57
1949 2016 5.545658 AAGCATGTATCCTTTTGTACGTG 57.454 39.130 0.00 0.00 39.61 4.49
1950 2017 4.575885 AGCATGTATCCTTTTGTACGTGT 58.424 39.130 0.00 0.00 39.10 4.49
1951 2018 5.726397 AGCATGTATCCTTTTGTACGTGTA 58.274 37.500 0.00 0.00 39.10 2.90
1952 2019 5.810587 AGCATGTATCCTTTTGTACGTGTAG 59.189 40.000 0.00 0.00 39.10 2.74
1953 2020 5.501897 GCATGTATCCTTTTGTACGTGTAGC 60.502 44.000 0.00 0.00 39.10 3.58
1954 2021 5.136816 TGTATCCTTTTGTACGTGTAGCA 57.863 39.130 0.00 0.00 0.00 3.49
1955 2022 5.726397 TGTATCCTTTTGTACGTGTAGCAT 58.274 37.500 0.00 0.00 0.00 3.79
1956 2023 6.167685 TGTATCCTTTTGTACGTGTAGCATT 58.832 36.000 0.00 0.00 0.00 3.56
1957 2024 7.321908 TGTATCCTTTTGTACGTGTAGCATTA 58.678 34.615 0.00 0.00 0.00 1.90
1958 2025 6.657836 ATCCTTTTGTACGTGTAGCATTAC 57.342 37.500 0.00 0.00 0.00 1.89
1959 2026 5.786311 TCCTTTTGTACGTGTAGCATTACT 58.214 37.500 0.00 0.00 0.00 2.24
1960 2027 5.865552 TCCTTTTGTACGTGTAGCATTACTC 59.134 40.000 0.00 0.00 0.00 2.59
1961 2028 5.063060 CCTTTTGTACGTGTAGCATTACTCC 59.937 44.000 0.00 0.00 0.00 3.85
1962 2029 3.788333 TGTACGTGTAGCATTACTCCC 57.212 47.619 0.00 0.00 0.00 4.30
1963 2030 2.428171 TGTACGTGTAGCATTACTCCCC 59.572 50.000 0.00 0.00 0.00 4.81
1964 2031 0.828677 ACGTGTAGCATTACTCCCCC 59.171 55.000 0.00 0.00 0.00 5.40
2002 2069 5.988310 TGAGGAAATCGTTAAGTGGTAGA 57.012 39.130 0.00 0.00 0.00 2.59
2007 2074 5.585047 GGAAATCGTTAAGTGGTAGATGCTT 59.415 40.000 0.00 0.00 0.00 3.91
2012 2079 4.142902 CGTTAAGTGGTAGATGCTTGGTTG 60.143 45.833 0.00 0.00 0.00 3.77
2045 2112 7.133483 AGTAGGGGATTAATAGGCTAATCGAT 58.867 38.462 0.00 0.00 38.61 3.59
2057 2124 3.431233 GGCTAATCGATAAGTTAACCGGC 59.569 47.826 0.00 0.00 0.00 6.13
2062 2138 3.876341 TCGATAAGTTAACCGGCCATTT 58.124 40.909 0.00 0.00 0.00 2.32
2082 2158 9.865321 GCCATTTATTGCATGATATATCAGTTT 57.135 29.630 19.73 1.72 40.64 2.66
2104 2180 2.038269 GGCGAATCGGTCAGCCAAA 61.038 57.895 4.35 0.00 42.21 3.28
2162 2238 9.618890 ATCGGATGAATTCTCTCATTCTTAAAA 57.381 29.630 7.05 0.00 36.15 1.52
2362 2438 3.953542 TCTGCTCCTACCACTAGATCA 57.046 47.619 0.00 0.00 0.00 2.92
2363 2439 4.461450 TCTGCTCCTACCACTAGATCAT 57.539 45.455 0.00 0.00 0.00 2.45
2364 2440 4.809193 TCTGCTCCTACCACTAGATCATT 58.191 43.478 0.00 0.00 0.00 2.57
2367 2443 5.150715 TGCTCCTACCACTAGATCATTGAT 58.849 41.667 0.00 0.00 0.00 2.57
2452 2528 5.411977 TCGTGGTCCTTAATTAAATTTGCGA 59.588 36.000 0.00 3.52 0.00 5.10
2455 2531 6.526674 GTGGTCCTTAATTAAATTTGCGACTG 59.473 38.462 0.00 0.00 0.00 3.51
2544 2620 1.467342 GTACGGCAGGACATGGTTTTC 59.533 52.381 0.00 0.00 0.00 2.29
2564 2640 7.336396 GTTTTCTCTTAGGTCTAATGGGCTTA 58.664 38.462 0.00 0.00 0.00 3.09
2587 2663 2.428569 GCGCGAGAACAGTCGACA 60.429 61.111 19.50 0.00 42.85 4.35
2599 2675 5.533903 AGAACAGTCGACAAAGGTTAGTCTA 59.466 40.000 19.50 0.00 32.68 2.59
2641 2717 6.550854 CCCAAGGATATTAATTTGAGCCTTCA 59.449 38.462 3.72 0.00 32.32 3.02
2673 2749 3.388308 CGGCTCAGAAACTATGATCCTG 58.612 50.000 0.00 0.00 32.03 3.86
2674 2750 3.068732 CGGCTCAGAAACTATGATCCTGA 59.931 47.826 0.00 0.00 32.03 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.594603 ACGAGGTTTGTATGTCCAGAG 57.405 47.619 0.00 0.00 0.00 3.35
1 2 4.768448 TCTTACGAGGTTTGTATGTCCAGA 59.232 41.667 0.00 0.00 0.00 3.86
2 3 5.068234 TCTTACGAGGTTTGTATGTCCAG 57.932 43.478 0.00 0.00 0.00 3.86
3 4 5.670792 ATCTTACGAGGTTTGTATGTCCA 57.329 39.130 0.00 0.00 0.00 4.02
4 5 8.658499 AATTATCTTACGAGGTTTGTATGTCC 57.342 34.615 0.00 0.00 0.00 4.02
6 7 9.257651 GCTAATTATCTTACGAGGTTTGTATGT 57.742 33.333 0.00 0.00 0.00 2.29
7 8 8.709646 GGCTAATTATCTTACGAGGTTTGTATG 58.290 37.037 0.00 0.00 0.00 2.39
8 9 7.597743 CGGCTAATTATCTTACGAGGTTTGTAT 59.402 37.037 0.00 0.00 0.00 2.29
9 10 6.919662 CGGCTAATTATCTTACGAGGTTTGTA 59.080 38.462 0.00 0.00 0.00 2.41
10 11 5.751990 CGGCTAATTATCTTACGAGGTTTGT 59.248 40.000 0.00 0.00 0.00 2.83
11 12 5.981315 TCGGCTAATTATCTTACGAGGTTTG 59.019 40.000 0.00 0.00 0.00 2.93
12 13 6.152932 TCGGCTAATTATCTTACGAGGTTT 57.847 37.500 0.00 0.00 0.00 3.27
13 14 5.779529 TCGGCTAATTATCTTACGAGGTT 57.220 39.130 0.00 0.00 0.00 3.50
14 15 5.779529 TTCGGCTAATTATCTTACGAGGT 57.220 39.130 0.00 0.00 0.00 3.85
15 16 7.811236 TGTAATTCGGCTAATTATCTTACGAGG 59.189 37.037 7.37 0.00 41.08 4.63
16 17 8.738199 TGTAATTCGGCTAATTATCTTACGAG 57.262 34.615 7.37 0.00 41.08 4.18
17 18 8.971321 GTTGTAATTCGGCTAATTATCTTACGA 58.029 33.333 7.37 0.00 41.08 3.43
18 19 8.975439 AGTTGTAATTCGGCTAATTATCTTACG 58.025 33.333 7.37 0.00 41.08 3.18
21 22 8.621286 CCAAGTTGTAATTCGGCTAATTATCTT 58.379 33.333 7.37 9.31 41.08 2.40
22 23 7.990886 TCCAAGTTGTAATTCGGCTAATTATCT 59.009 33.333 7.37 4.89 41.08 1.98
23 24 8.149973 TCCAAGTTGTAATTCGGCTAATTATC 57.850 34.615 7.37 3.40 41.08 1.75
24 25 8.514330 TTCCAAGTTGTAATTCGGCTAATTAT 57.486 30.769 7.37 0.00 41.08 1.28
25 26 7.066525 CCTTCCAAGTTGTAATTCGGCTAATTA 59.933 37.037 1.45 0.47 38.71 1.40
26 27 6.127730 CCTTCCAAGTTGTAATTCGGCTAATT 60.128 38.462 1.45 2.40 40.87 1.40
27 28 5.357032 CCTTCCAAGTTGTAATTCGGCTAAT 59.643 40.000 1.45 0.00 0.00 1.73
28 29 4.698304 CCTTCCAAGTTGTAATTCGGCTAA 59.302 41.667 1.45 0.00 0.00 3.09
29 30 4.258543 CCTTCCAAGTTGTAATTCGGCTA 58.741 43.478 1.45 0.00 0.00 3.93
30 31 3.081804 CCTTCCAAGTTGTAATTCGGCT 58.918 45.455 1.45 0.00 0.00 5.52
31 32 2.415491 GCCTTCCAAGTTGTAATTCGGC 60.415 50.000 1.45 0.00 0.00 5.54
32 33 3.081804 AGCCTTCCAAGTTGTAATTCGG 58.918 45.455 1.45 0.00 0.00 4.30
33 34 5.642063 TCTTAGCCTTCCAAGTTGTAATTCG 59.358 40.000 1.45 0.00 0.00 3.34
34 35 7.448748 TTCTTAGCCTTCCAAGTTGTAATTC 57.551 36.000 1.45 0.00 0.00 2.17
35 36 7.521585 CGTTTCTTAGCCTTCCAAGTTGTAATT 60.522 37.037 1.45 0.00 0.00 1.40
36 37 6.072673 CGTTTCTTAGCCTTCCAAGTTGTAAT 60.073 38.462 1.45 0.00 0.00 1.89
37 38 5.237779 CGTTTCTTAGCCTTCCAAGTTGTAA 59.762 40.000 1.45 0.00 0.00 2.41
38 39 4.753107 CGTTTCTTAGCCTTCCAAGTTGTA 59.247 41.667 1.45 0.00 0.00 2.41
39 40 3.564225 CGTTTCTTAGCCTTCCAAGTTGT 59.436 43.478 1.45 0.00 0.00 3.32
40 41 3.813166 TCGTTTCTTAGCCTTCCAAGTTG 59.187 43.478 0.00 0.00 0.00 3.16
41 42 4.081322 TCGTTTCTTAGCCTTCCAAGTT 57.919 40.909 0.00 0.00 0.00 2.66
42 43 3.764237 TCGTTTCTTAGCCTTCCAAGT 57.236 42.857 0.00 0.00 0.00 3.16
43 44 6.106673 TCTTATCGTTTCTTAGCCTTCCAAG 58.893 40.000 0.00 0.00 0.00 3.61
44 45 6.045072 TCTTATCGTTTCTTAGCCTTCCAA 57.955 37.500 0.00 0.00 0.00 3.53
45 46 5.670792 TCTTATCGTTTCTTAGCCTTCCA 57.329 39.130 0.00 0.00 0.00 3.53
46 47 6.980051 TTTCTTATCGTTTCTTAGCCTTCC 57.020 37.500 0.00 0.00 0.00 3.46
67 68 9.325198 GGTTTTGTCCAAATCTCAGTTTATTTT 57.675 29.630 0.00 0.00 0.00 1.82
68 69 8.704668 AGGTTTTGTCCAAATCTCAGTTTATTT 58.295 29.630 0.00 0.00 28.62 1.40
69 70 8.250143 AGGTTTTGTCCAAATCTCAGTTTATT 57.750 30.769 0.00 0.00 28.62 1.40
70 71 7.839680 AGGTTTTGTCCAAATCTCAGTTTAT 57.160 32.000 0.00 0.00 28.62 1.40
78 79 4.731313 AGGAGAGGTTTTGTCCAAATCT 57.269 40.909 0.00 0.00 41.70 2.40
79 80 6.180472 TCATAGGAGAGGTTTTGTCCAAATC 58.820 40.000 0.00 0.00 41.70 2.17
80 81 6.139679 TCATAGGAGAGGTTTTGTCCAAAT 57.860 37.500 0.00 0.00 41.70 2.32
81 82 5.576563 TCATAGGAGAGGTTTTGTCCAAA 57.423 39.130 0.00 0.00 41.70 3.28
82 83 5.250543 TGATCATAGGAGAGGTTTTGTCCAA 59.749 40.000 0.00 0.00 41.70 3.53
83 84 4.782691 TGATCATAGGAGAGGTTTTGTCCA 59.217 41.667 0.00 0.00 41.70 4.02
84 85 5.359194 TGATCATAGGAGAGGTTTTGTCC 57.641 43.478 0.00 0.00 39.54 4.02
85 86 6.352516 ACATGATCATAGGAGAGGTTTTGTC 58.647 40.000 8.15 0.00 0.00 3.18
86 87 6.319048 ACATGATCATAGGAGAGGTTTTGT 57.681 37.500 8.15 0.00 0.00 2.83
87 88 7.636150 AAACATGATCATAGGAGAGGTTTTG 57.364 36.000 8.15 0.00 0.00 2.44
88 89 7.671398 ACAAAACATGATCATAGGAGAGGTTTT 59.329 33.333 18.06 18.06 35.46 2.43
89 90 7.177878 ACAAAACATGATCATAGGAGAGGTTT 58.822 34.615 8.15 9.69 29.61 3.27
90 91 6.725364 ACAAAACATGATCATAGGAGAGGTT 58.275 36.000 8.15 3.75 0.00 3.50
91 92 6.070021 TGACAAAACATGATCATAGGAGAGGT 60.070 38.462 8.15 0.00 0.00 3.85
92 93 6.351711 TGACAAAACATGATCATAGGAGAGG 58.648 40.000 8.15 0.00 0.00 3.69
160 161 8.589335 AATATAAAGCTACACGATCGAACAAT 57.411 30.769 24.34 4.41 0.00 2.71
185 186 7.228108 TCAAAACAGACTCTCGTAACTCTCTAA 59.772 37.037 0.00 0.00 0.00 2.10
191 192 5.258456 TGTCAAAACAGACTCTCGTAACT 57.742 39.130 0.00 0.00 39.27 2.24
220 221 5.446260 AGTCTAAAAATGATAACCCCGGT 57.554 39.130 0.00 0.00 0.00 5.28
239 240 8.988934 TGATATGTTCACAGAACTAAACAAGTC 58.011 33.333 10.79 0.00 37.50 3.01
271 272 7.603180 AGGAGTTACATGATGAGCTATGTAA 57.397 36.000 13.41 13.41 43.60 2.41
274 275 6.286758 ACAAGGAGTTACATGATGAGCTATG 58.713 40.000 0.00 0.00 0.00 2.23
277 278 4.833478 ACAAGGAGTTACATGATGAGCT 57.167 40.909 0.00 0.00 0.00 4.09
278 279 5.163713 GGAAACAAGGAGTTACATGATGAGC 60.164 44.000 0.00 0.00 40.26 4.26
287 288 6.635030 ACATTGAAGGAAACAAGGAGTTAC 57.365 37.500 0.00 0.00 40.26 2.50
307 308 7.794683 TCCTCTACTATCCAAGGGAATTAACAT 59.205 37.037 0.00 0.00 34.34 2.71
310 311 8.016652 TCATCCTCTACTATCCAAGGGAATTAA 58.983 37.037 0.00 0.00 34.34 1.40
380 381 2.266055 GTAGCGCCACTTGCTCCT 59.734 61.111 2.29 0.00 42.85 3.69
400 401 7.141363 ACTGTATCTCAACTTGTTTCAAATGC 58.859 34.615 0.00 0.00 0.00 3.56
419 420 4.040952 ACTTCCAAAGCTCAGTGACTGTAT 59.959 41.667 12.93 0.00 32.61 2.29
429 430 4.709397 TCCAAAAGAAACTTCCAAAGCTCA 59.291 37.500 0.00 0.00 0.00 4.26
464 465 4.285003 TCGGTCTCTCCAAGTGGAAATTTA 59.715 41.667 0.89 0.00 44.91 1.40
471 472 1.216710 GCTCGGTCTCTCCAAGTGG 59.783 63.158 0.00 0.00 35.57 4.00
472 473 1.464734 TAGCTCGGTCTCTCCAAGTG 58.535 55.000 0.00 0.00 35.57 3.16
489 490 4.261801 ACATTGGAAGGTTCAACCGATAG 58.738 43.478 0.00 0.00 44.90 2.08
494 495 2.365293 AGCAACATTGGAAGGTTCAACC 59.635 45.455 0.00 0.00 38.99 3.77
495 496 3.733443 AGCAACATTGGAAGGTTCAAC 57.267 42.857 0.00 0.00 29.39 3.18
522 523 8.954350 CATTGGGAGATGAATATTGTTCTATCC 58.046 37.037 0.00 1.86 0.00 2.59
535 536 4.022068 GTCAGCAAAACATTGGGAGATGAA 60.022 41.667 0.00 0.00 0.00 2.57
537 538 3.367703 GGTCAGCAAAACATTGGGAGATG 60.368 47.826 0.00 0.00 0.00 2.90
551 552 2.016318 CATTTAGCGGATGGTCAGCAA 58.984 47.619 4.99 0.00 40.07 3.91
576 578 0.375803 CTAACACGTAAATGCCGGGC 59.624 55.000 13.32 13.32 30.04 6.13
578 580 2.858344 CTCTCTAACACGTAAATGCCGG 59.142 50.000 0.00 0.00 0.00 6.13
586 588 4.142534 CCCACGATTTCTCTCTAACACGTA 60.143 45.833 0.00 0.00 0.00 3.57
587 589 3.367087 CCCACGATTTCTCTCTAACACGT 60.367 47.826 0.00 0.00 0.00 4.49
588 590 3.179830 CCCACGATTTCTCTCTAACACG 58.820 50.000 0.00 0.00 0.00 4.49
589 591 2.930682 GCCCACGATTTCTCTCTAACAC 59.069 50.000 0.00 0.00 0.00 3.32
590 592 2.565391 TGCCCACGATTTCTCTCTAACA 59.435 45.455 0.00 0.00 0.00 2.41
591 593 3.247006 TGCCCACGATTTCTCTCTAAC 57.753 47.619 0.00 0.00 0.00 2.34
592 594 3.450817 TGATGCCCACGATTTCTCTCTAA 59.549 43.478 0.00 0.00 0.00 2.10
593 595 3.031013 TGATGCCCACGATTTCTCTCTA 58.969 45.455 0.00 0.00 0.00 2.43
594 596 1.833630 TGATGCCCACGATTTCTCTCT 59.166 47.619 0.00 0.00 0.00 3.10
605 607 2.173669 CGTCATCCGTGATGCCCAC 61.174 63.158 8.51 0.00 39.63 4.61
615 617 0.572590 GAGAATCAACGCGTCATCCG 59.427 55.000 14.44 0.00 35.35 4.18
641 643 6.507456 CGGCGTTATTAGTTAACAAGCTAGTG 60.507 42.308 8.61 0.00 40.25 2.74
643 645 5.745294 TCGGCGTTATTAGTTAACAAGCTAG 59.255 40.000 6.85 0.66 40.25 3.42
644 646 5.649557 TCGGCGTTATTAGTTAACAAGCTA 58.350 37.500 6.85 0.00 40.25 3.32
645 647 4.497300 TCGGCGTTATTAGTTAACAAGCT 58.503 39.130 6.85 0.00 40.25 3.74
646 648 4.845621 TCGGCGTTATTAGTTAACAAGC 57.154 40.909 6.85 0.38 40.25 4.01
647 649 6.399204 AGTTCGGCGTTATTAGTTAACAAG 57.601 37.500 6.85 0.00 40.25 3.16
648 650 7.383572 TGTTAGTTCGGCGTTATTAGTTAACAA 59.616 33.333 6.85 0.80 40.25 2.83
649 651 6.865726 TGTTAGTTCGGCGTTATTAGTTAACA 59.134 34.615 6.85 9.03 40.25 2.41
650 652 7.148820 TGTGTTAGTTCGGCGTTATTAGTTAAC 60.149 37.037 6.85 0.00 37.43 2.01
651 653 6.865726 TGTGTTAGTTCGGCGTTATTAGTTAA 59.134 34.615 6.85 0.00 0.00 2.01
652 654 6.307800 GTGTGTTAGTTCGGCGTTATTAGTTA 59.692 38.462 6.85 0.00 0.00 2.24
653 655 5.119125 GTGTGTTAGTTCGGCGTTATTAGTT 59.881 40.000 6.85 0.00 0.00 2.24
654 656 4.622740 GTGTGTTAGTTCGGCGTTATTAGT 59.377 41.667 6.85 0.00 0.00 2.24
655 657 4.860907 AGTGTGTTAGTTCGGCGTTATTAG 59.139 41.667 6.85 0.00 0.00 1.73
656 658 4.808558 AGTGTGTTAGTTCGGCGTTATTA 58.191 39.130 6.85 0.00 0.00 0.98
657 659 3.656559 AGTGTGTTAGTTCGGCGTTATT 58.343 40.909 6.85 0.00 0.00 1.40
658 660 3.308438 AGTGTGTTAGTTCGGCGTTAT 57.692 42.857 6.85 0.00 0.00 1.89
662 664 1.844357 CGATAGTGTGTTAGTTCGGCG 59.156 52.381 0.00 0.00 0.00 6.46
663 665 3.141002 TCGATAGTGTGTTAGTTCGGC 57.859 47.619 0.00 0.00 37.40 5.54
664 666 4.026804 GCAATCGATAGTGTGTTAGTTCGG 60.027 45.833 0.00 0.00 37.40 4.30
665 667 4.798907 AGCAATCGATAGTGTGTTAGTTCG 59.201 41.667 0.00 0.00 37.40 3.95
666 668 5.005779 CCAGCAATCGATAGTGTGTTAGTTC 59.994 44.000 0.00 0.00 37.40 3.01
667 669 4.870426 CCAGCAATCGATAGTGTGTTAGTT 59.130 41.667 0.00 0.00 37.40 2.24
669 671 3.246226 GCCAGCAATCGATAGTGTGTTAG 59.754 47.826 0.00 0.00 37.40 2.34
670 672 3.194861 GCCAGCAATCGATAGTGTGTTA 58.805 45.455 0.00 0.00 37.40 2.41
671 673 2.009774 GCCAGCAATCGATAGTGTGTT 58.990 47.619 0.00 0.00 37.40 3.32
672 674 1.656652 GCCAGCAATCGATAGTGTGT 58.343 50.000 0.00 0.00 37.40 3.72
673 675 0.940126 GGCCAGCAATCGATAGTGTG 59.060 55.000 0.00 0.00 37.40 3.82
674 676 0.541392 TGGCCAGCAATCGATAGTGT 59.459 50.000 0.00 0.00 37.40 3.55
675 677 1.802960 GATGGCCAGCAATCGATAGTG 59.197 52.381 18.08 0.00 37.40 2.74
676 678 1.417517 TGATGGCCAGCAATCGATAGT 59.582 47.619 24.04 0.00 37.40 2.12
677 679 2.174363 TGATGGCCAGCAATCGATAG 57.826 50.000 24.04 0.00 0.00 2.08
678 680 2.865119 ATGATGGCCAGCAATCGATA 57.135 45.000 30.06 1.72 0.00 2.92
679 681 2.865119 TATGATGGCCAGCAATCGAT 57.135 45.000 30.06 13.97 0.00 3.59
680 682 2.703416 GATATGATGGCCAGCAATCGA 58.297 47.619 30.06 14.09 0.00 3.59
682 684 2.430465 ACGATATGATGGCCAGCAATC 58.570 47.619 30.06 26.35 0.00 2.67
684 686 3.007831 TGATACGATATGATGGCCAGCAA 59.992 43.478 30.06 17.51 0.00 3.91
685 687 2.566724 TGATACGATATGATGGCCAGCA 59.433 45.455 28.48 28.48 0.00 4.41
687 689 5.181009 ACATTGATACGATATGATGGCCAG 58.819 41.667 13.05 0.00 0.00 4.85
688 690 5.164620 ACATTGATACGATATGATGGCCA 57.835 39.130 8.56 8.56 0.00 5.36
689 691 6.500684 AAACATTGATACGATATGATGGCC 57.499 37.500 0.00 0.00 0.00 5.36
690 692 9.891828 TTTAAAACATTGATACGATATGATGGC 57.108 29.630 0.00 0.00 0.00 4.40
705 736 7.715657 TCCATAGCCTGCTATTTAAAACATTG 58.284 34.615 8.90 0.00 37.16 2.82
706 737 7.896383 TCCATAGCCTGCTATTTAAAACATT 57.104 32.000 8.90 0.00 37.16 2.71
707 738 7.896383 TTCCATAGCCTGCTATTTAAAACAT 57.104 32.000 8.90 0.00 37.16 2.71
711 742 8.576442 GCTATTTTCCATAGCCTGCTATTTAAA 58.424 33.333 8.90 9.45 40.69 1.52
712 743 7.094805 CGCTATTTTCCATAGCCTGCTATTTAA 60.095 37.037 8.90 4.31 42.89 1.52
713 744 6.371548 CGCTATTTTCCATAGCCTGCTATTTA 59.628 38.462 8.90 0.00 42.89 1.40
714 745 5.182001 CGCTATTTTCCATAGCCTGCTATTT 59.818 40.000 8.90 0.00 42.89 1.40
715 746 4.697352 CGCTATTTTCCATAGCCTGCTATT 59.303 41.667 8.90 0.00 42.89 1.73
716 747 4.256920 CGCTATTTTCCATAGCCTGCTAT 58.743 43.478 5.84 5.84 42.89 2.97
717 748 3.557054 CCGCTATTTTCCATAGCCTGCTA 60.557 47.826 0.64 0.64 42.89 3.49
718 749 2.498167 CGCTATTTTCCATAGCCTGCT 58.502 47.619 8.01 0.00 42.89 4.24
719 750 1.537202 CCGCTATTTTCCATAGCCTGC 59.463 52.381 8.01 0.00 42.89 4.85
720 751 1.537202 GCCGCTATTTTCCATAGCCTG 59.463 52.381 8.01 2.15 42.89 4.85
721 752 1.878102 CGCCGCTATTTTCCATAGCCT 60.878 52.381 8.01 0.00 42.89 4.58
722 753 0.517316 CGCCGCTATTTTCCATAGCC 59.483 55.000 8.01 0.00 42.89 3.93
723 754 1.461127 CTCGCCGCTATTTTCCATAGC 59.539 52.381 4.08 4.08 42.53 2.97
724 755 1.461127 GCTCGCCGCTATTTTCCATAG 59.539 52.381 0.00 0.00 35.14 2.23
725 756 1.508632 GCTCGCCGCTATTTTCCATA 58.491 50.000 0.00 0.00 35.14 2.74
726 757 1.166531 GGCTCGCCGCTATTTTCCAT 61.167 55.000 0.00 0.00 39.13 3.41
727 758 1.817941 GGCTCGCCGCTATTTTCCA 60.818 57.895 0.00 0.00 39.13 3.53
728 759 1.499688 GAGGCTCGCCGCTATTTTCC 61.500 60.000 0.00 0.00 41.95 3.13
729 760 1.499688 GGAGGCTCGCCGCTATTTTC 61.500 60.000 8.69 0.00 41.95 2.29
730 761 1.523938 GGAGGCTCGCCGCTATTTT 60.524 57.895 8.69 0.00 41.95 1.82
731 762 2.109181 GGAGGCTCGCCGCTATTT 59.891 61.111 8.69 0.00 41.95 1.40
732 763 2.731571 TTGGAGGCTCGCCGCTATT 61.732 57.895 8.69 0.00 41.95 1.73
733 764 3.154473 TTGGAGGCTCGCCGCTAT 61.154 61.111 8.69 0.00 41.95 2.97
734 765 4.143333 GTTGGAGGCTCGCCGCTA 62.143 66.667 8.69 2.45 41.95 4.26
737 768 3.997064 CTGAGTTGGAGGCTCGCCG 62.997 68.421 8.69 0.00 41.95 6.46
738 769 2.125350 CTGAGTTGGAGGCTCGCC 60.125 66.667 8.69 0.00 35.85 5.54
739 770 1.949847 TAGCTGAGTTGGAGGCTCGC 61.950 60.000 8.69 4.27 36.40 5.03
740 771 0.749649 ATAGCTGAGTTGGAGGCTCG 59.250 55.000 8.69 0.00 36.40 5.03
741 772 2.288763 GCTATAGCTGAGTTGGAGGCTC 60.289 54.545 17.75 5.78 38.21 4.70
742 773 1.691434 GCTATAGCTGAGTTGGAGGCT 59.309 52.381 17.75 0.00 38.21 4.58
743 774 1.604185 CGCTATAGCTGAGTTGGAGGC 60.604 57.143 21.98 0.00 39.32 4.70
744 775 1.000283 CCGCTATAGCTGAGTTGGAGG 60.000 57.143 21.98 8.89 39.32 4.30
745 776 1.000283 CCCGCTATAGCTGAGTTGGAG 60.000 57.143 21.98 3.56 39.32 3.86
746 777 1.040646 CCCGCTATAGCTGAGTTGGA 58.959 55.000 21.98 0.00 39.32 3.53
747 778 0.601311 GCCCGCTATAGCTGAGTTGG 60.601 60.000 21.98 14.00 39.32 3.77
748 779 0.390860 AGCCCGCTATAGCTGAGTTG 59.609 55.000 21.98 5.68 38.11 3.16
749 780 1.996798 TAGCCCGCTATAGCTGAGTT 58.003 50.000 21.98 10.79 40.28 3.01
750 781 1.996798 TTAGCCCGCTATAGCTGAGT 58.003 50.000 21.98 8.88 40.28 3.41
751 782 2.928731 GCTTTAGCCCGCTATAGCTGAG 60.929 54.545 23.62 11.42 44.50 3.35
752 783 1.000955 GCTTTAGCCCGCTATAGCTGA 59.999 52.381 23.62 0.00 44.50 4.26
753 784 1.433534 GCTTTAGCCCGCTATAGCTG 58.566 55.000 23.62 15.59 44.50 4.24
754 785 0.038159 CGCTTTAGCCCGCTATAGCT 60.038 55.000 26.12 6.31 45.17 3.32
755 786 1.014564 CCGCTTTAGCCCGCTATAGC 61.015 60.000 21.99 21.99 44.47 2.97
756 787 0.389948 CCCGCTTTAGCCCGCTATAG 60.390 60.000 9.14 9.14 37.91 1.31
757 788 1.669440 CCCGCTTTAGCCCGCTATA 59.331 57.895 0.00 0.00 37.91 1.31
758 789 2.426023 CCCGCTTTAGCCCGCTAT 59.574 61.111 0.00 0.00 37.91 2.97
759 790 4.540735 GCCCGCTTTAGCCCGCTA 62.541 66.667 0.00 0.00 37.91 4.26
761 792 3.826926 ATAGCCCGCTTTAGCCCGC 62.827 63.158 0.00 0.00 37.91 6.13
762 793 0.818040 AAATAGCCCGCTTTAGCCCG 60.818 55.000 0.00 0.00 37.91 6.13
763 794 0.668535 CAAATAGCCCGCTTTAGCCC 59.331 55.000 0.00 0.00 37.91 5.19
764 795 1.065551 CACAAATAGCCCGCTTTAGCC 59.934 52.381 0.00 0.00 37.91 3.93
765 796 2.014128 TCACAAATAGCCCGCTTTAGC 58.986 47.619 0.00 0.00 37.78 3.09
766 797 3.065371 CCTTCACAAATAGCCCGCTTTAG 59.935 47.826 0.00 0.00 0.00 1.85
767 798 3.013921 CCTTCACAAATAGCCCGCTTTA 58.986 45.455 0.00 0.00 0.00 1.85
768 799 1.818674 CCTTCACAAATAGCCCGCTTT 59.181 47.619 0.00 0.00 0.00 3.51
769 800 1.463674 CCTTCACAAATAGCCCGCTT 58.536 50.000 0.00 0.00 0.00 4.68
770 801 1.032114 GCCTTCACAAATAGCCCGCT 61.032 55.000 0.00 0.00 0.00 5.52
771 802 1.433471 GCCTTCACAAATAGCCCGC 59.567 57.895 0.00 0.00 0.00 6.13
772 803 0.742990 TCGCCTTCACAAATAGCCCG 60.743 55.000 0.00 0.00 0.00 6.13
773 804 0.733150 GTCGCCTTCACAAATAGCCC 59.267 55.000 0.00 0.00 0.00 5.19
774 805 0.733150 GGTCGCCTTCACAAATAGCC 59.267 55.000 0.00 0.00 0.00 3.93
775 806 1.448985 TGGTCGCCTTCACAAATAGC 58.551 50.000 0.00 0.00 0.00 2.97
776 807 4.701956 AAATGGTCGCCTTCACAAATAG 57.298 40.909 0.00 0.00 0.00 1.73
777 808 4.095782 GCTAAATGGTCGCCTTCACAAATA 59.904 41.667 0.00 0.00 0.00 1.40
778 809 3.119495 GCTAAATGGTCGCCTTCACAAAT 60.119 43.478 0.00 0.00 0.00 2.32
779 810 2.227865 GCTAAATGGTCGCCTTCACAAA 59.772 45.455 0.00 0.00 0.00 2.83
780 811 1.810151 GCTAAATGGTCGCCTTCACAA 59.190 47.619 0.00 0.00 0.00 3.33
781 812 1.448985 GCTAAATGGTCGCCTTCACA 58.551 50.000 0.00 0.00 0.00 3.58
782 813 0.373716 CGCTAAATGGTCGCCTTCAC 59.626 55.000 0.00 0.00 0.00 3.18
783 814 0.742990 CCGCTAAATGGTCGCCTTCA 60.743 55.000 0.00 0.00 0.00 3.02
784 815 2.014594 CCGCTAAATGGTCGCCTTC 58.985 57.895 0.00 0.00 0.00 3.46
785 816 2.112815 GCCGCTAAATGGTCGCCTT 61.113 57.895 0.00 0.00 0.00 4.35
786 817 2.513897 GCCGCTAAATGGTCGCCT 60.514 61.111 0.00 0.00 0.00 5.52
787 818 2.822255 TGCCGCTAAATGGTCGCC 60.822 61.111 0.00 0.00 0.00 5.54
788 819 2.403586 GTGCCGCTAAATGGTCGC 59.596 61.111 0.00 0.00 0.00 5.19
789 820 2.469516 GGGTGCCGCTAAATGGTCG 61.470 63.158 0.00 0.00 0.00 4.79
790 821 0.179468 TAGGGTGCCGCTAAATGGTC 59.821 55.000 0.00 0.00 0.00 4.02
791 822 0.107361 GTAGGGTGCCGCTAAATGGT 60.107 55.000 0.00 0.00 30.97 3.55
792 823 0.180406 AGTAGGGTGCCGCTAAATGG 59.820 55.000 0.00 0.00 30.97 3.16
793 824 1.134521 TCAGTAGGGTGCCGCTAAATG 60.135 52.381 0.00 4.43 30.97 2.32
794 825 1.200519 TCAGTAGGGTGCCGCTAAAT 58.799 50.000 0.00 0.00 30.97 1.40
795 826 0.978151 TTCAGTAGGGTGCCGCTAAA 59.022 50.000 0.00 0.00 30.97 1.85
796 827 0.978151 TTTCAGTAGGGTGCCGCTAA 59.022 50.000 0.00 0.00 30.97 3.09
797 828 0.978151 TTTTCAGTAGGGTGCCGCTA 59.022 50.000 0.00 0.00 0.00 4.26
798 829 0.321653 CTTTTCAGTAGGGTGCCGCT 60.322 55.000 0.00 0.00 0.00 5.52
799 830 1.305930 CCTTTTCAGTAGGGTGCCGC 61.306 60.000 0.00 0.00 0.00 6.53
800 831 1.305930 GCCTTTTCAGTAGGGTGCCG 61.306 60.000 0.00 0.00 33.19 5.69
801 832 0.038310 AGCCTTTTCAGTAGGGTGCC 59.962 55.000 0.00 0.00 41.72 5.01
802 833 2.781681 TAGCCTTTTCAGTAGGGTGC 57.218 50.000 3.99 0.00 43.07 5.01
803 834 4.381411 GCTATAGCCTTTTCAGTAGGGTG 58.619 47.826 14.13 0.00 43.07 4.61
804 835 3.069729 CGCTATAGCCTTTTCAGTAGGGT 59.930 47.826 19.00 0.00 45.08 4.34
805 836 3.555168 CCGCTATAGCCTTTTCAGTAGGG 60.555 52.174 19.00 5.88 37.91 3.53
806 837 3.321111 TCCGCTATAGCCTTTTCAGTAGG 59.679 47.826 19.00 9.97 37.91 3.18
807 838 4.551388 CTCCGCTATAGCCTTTTCAGTAG 58.449 47.826 19.00 0.81 37.91 2.57
808 839 3.321111 CCTCCGCTATAGCCTTTTCAGTA 59.679 47.826 19.00 0.00 37.91 2.74
809 840 2.103263 CCTCCGCTATAGCCTTTTCAGT 59.897 50.000 19.00 0.00 37.91 3.41
810 841 2.103263 ACCTCCGCTATAGCCTTTTCAG 59.897 50.000 19.00 2.99 37.91 3.02
811 842 2.116238 ACCTCCGCTATAGCCTTTTCA 58.884 47.619 19.00 0.00 37.91 2.69
812 843 2.912690 ACCTCCGCTATAGCCTTTTC 57.087 50.000 19.00 0.00 37.91 2.29
813 844 5.279859 GGTTATACCTCCGCTATAGCCTTTT 60.280 44.000 19.00 2.78 34.55 2.27
814 845 4.222366 GGTTATACCTCCGCTATAGCCTTT 59.778 45.833 19.00 2.09 34.55 3.11
815 846 3.768215 GGTTATACCTCCGCTATAGCCTT 59.232 47.826 19.00 1.74 34.55 4.35
816 847 3.363627 GGTTATACCTCCGCTATAGCCT 58.636 50.000 19.00 0.00 34.55 4.58
817 848 2.098770 CGGTTATACCTCCGCTATAGCC 59.901 54.545 19.00 1.80 40.28 3.93
818 849 2.098770 CCGGTTATACCTCCGCTATAGC 59.901 54.545 15.09 15.09 44.63 2.97
819 850 2.098770 GCCGGTTATACCTCCGCTATAG 59.901 54.545 1.90 0.00 44.63 1.31
820 851 2.094675 GCCGGTTATACCTCCGCTATA 58.905 52.381 1.90 0.00 44.63 1.31
821 852 0.893447 GCCGGTTATACCTCCGCTAT 59.107 55.000 1.90 0.00 44.63 2.97
822 853 0.178981 AGCCGGTTATACCTCCGCTA 60.179 55.000 1.90 0.00 44.63 4.26
823 854 0.178981 TAGCCGGTTATACCTCCGCT 60.179 55.000 1.90 0.00 44.63 5.52
824 855 0.893447 ATAGCCGGTTATACCTCCGC 59.107 55.000 9.35 0.00 44.63 5.54
825 856 3.672767 AAATAGCCGGTTATACCTCCG 57.327 47.619 11.59 0.00 45.42 4.63
826 857 6.994496 AGTTTTAAATAGCCGGTTATACCTCC 59.006 38.462 11.59 0.00 35.66 4.30
827 858 9.716531 ATAGTTTTAAATAGCCGGTTATACCTC 57.283 33.333 11.59 1.51 35.66 3.85
828 859 9.498176 CATAGTTTTAAATAGCCGGTTATACCT 57.502 33.333 11.59 2.37 35.66 3.08
829 860 9.276590 ACATAGTTTTAAATAGCCGGTTATACC 57.723 33.333 11.59 0.00 34.05 2.73
834 865 8.967664 TGATACATAGTTTTAAATAGCCGGTT 57.032 30.769 1.90 0.00 0.00 4.44
843 874 9.877137 CTTGCGCATATGATACATAGTTTTAAA 57.123 29.630 12.75 0.00 0.00 1.52
844 875 9.267084 TCTTGCGCATATGATACATAGTTTTAA 57.733 29.630 12.75 0.00 0.00 1.52
845 876 8.825667 TCTTGCGCATATGATACATAGTTTTA 57.174 30.769 12.75 0.00 0.00 1.52
846 877 7.728847 TCTTGCGCATATGATACATAGTTTT 57.271 32.000 12.75 0.00 0.00 2.43
847 878 7.728847 TTCTTGCGCATATGATACATAGTTT 57.271 32.000 12.75 0.00 0.00 2.66
848 879 7.728847 TTTCTTGCGCATATGATACATAGTT 57.271 32.000 12.75 0.00 0.00 2.24
849 880 7.226523 TGTTTTCTTGCGCATATGATACATAGT 59.773 33.333 12.75 0.00 0.00 2.12
850 881 7.575365 TGTTTTCTTGCGCATATGATACATAG 58.425 34.615 12.75 0.56 0.00 2.23
851 882 7.489574 TGTTTTCTTGCGCATATGATACATA 57.510 32.000 12.75 0.00 0.00 2.29
852 883 6.375945 TGTTTTCTTGCGCATATGATACAT 57.624 33.333 12.75 0.00 0.00 2.29
853 884 5.809719 TGTTTTCTTGCGCATATGATACA 57.190 34.783 12.75 13.70 0.00 2.29
854 885 7.549649 CATTTGTTTTCTTGCGCATATGATAC 58.450 34.615 12.75 11.52 0.00 2.24
855 886 6.198778 GCATTTGTTTTCTTGCGCATATGATA 59.801 34.615 12.75 2.72 0.00 2.15
856 887 5.005971 GCATTTGTTTTCTTGCGCATATGAT 59.994 36.000 12.75 0.00 0.00 2.45
857 888 4.326817 GCATTTGTTTTCTTGCGCATATGA 59.673 37.500 12.75 7.62 0.00 2.15
858 889 4.327898 AGCATTTGTTTTCTTGCGCATATG 59.672 37.500 12.75 4.92 40.00 1.78
859 890 4.497300 AGCATTTGTTTTCTTGCGCATAT 58.503 34.783 12.75 0.00 40.00 1.78
860 891 3.911868 AGCATTTGTTTTCTTGCGCATA 58.088 36.364 12.75 0.00 40.00 3.14
861 892 2.758009 AGCATTTGTTTTCTTGCGCAT 58.242 38.095 12.75 0.00 40.00 4.73
862 893 2.222007 AGCATTTGTTTTCTTGCGCA 57.778 40.000 5.66 5.66 40.00 6.09
863 894 2.796593 AGAAGCATTTGTTTTCTTGCGC 59.203 40.909 0.00 0.00 40.00 6.09
864 895 4.754332 CAAGAAGCATTTGTTTTCTTGCG 58.246 39.130 18.07 5.46 46.00 4.85
895 926 0.167251 GAATACCAACGGCCAACACG 59.833 55.000 2.24 0.00 37.36 4.49
903 934 4.218852 GGATAGAGGAGAGAATACCAACGG 59.781 50.000 0.00 0.00 0.00 4.44
909 940 9.914834 ACACTATATGGATAGAGGAGAGAATAC 57.085 37.037 0.00 0.00 37.81 1.89
939 972 3.660501 TCGATGAAATATAGCTGGCGT 57.339 42.857 0.00 0.00 0.00 5.68
941 974 5.163814 GGTTGATCGATGAAATATAGCTGGC 60.164 44.000 0.54 0.00 0.00 4.85
958 991 3.053619 AGTGGATTAGTTGGGGGTTGATC 60.054 47.826 0.00 0.00 0.00 2.92
963 996 3.743132 TGATAGTGGATTAGTTGGGGGT 58.257 45.455 0.00 0.00 0.00 4.95
966 999 7.282585 TGAATCTTGATAGTGGATTAGTTGGG 58.717 38.462 0.00 0.00 30.98 4.12
976 1009 4.625028 TCAGCGATGAATCTTGATAGTGG 58.375 43.478 0.00 0.00 0.00 4.00
977 1010 6.594284 TTTCAGCGATGAATCTTGATAGTG 57.406 37.500 17.94 0.00 0.00 2.74
980 1013 5.049198 GCCATTTCAGCGATGAATCTTGATA 60.049 40.000 17.94 0.00 0.00 2.15
981 1014 4.261489 GCCATTTCAGCGATGAATCTTGAT 60.261 41.667 17.94 4.23 0.00 2.57
982 1015 3.065786 GCCATTTCAGCGATGAATCTTGA 59.934 43.478 17.94 1.59 0.00 3.02
984 1017 2.360165 GGCCATTTCAGCGATGAATCTT 59.640 45.455 17.94 2.56 0.00 2.40
986 1019 1.677576 TGGCCATTTCAGCGATGAATC 59.322 47.619 17.94 6.90 0.00 2.52
987 1020 1.766494 TGGCCATTTCAGCGATGAAT 58.234 45.000 17.94 4.78 0.00 2.57
988 1021 1.202114 GTTGGCCATTTCAGCGATGAA 59.798 47.619 12.91 12.91 0.00 2.57
989 1022 0.810648 GTTGGCCATTTCAGCGATGA 59.189 50.000 6.09 0.00 0.00 2.92
990 1023 0.523968 CGTTGGCCATTTCAGCGATG 60.524 55.000 6.09 0.00 40.39 3.84
991 1024 1.656818 CCGTTGGCCATTTCAGCGAT 61.657 55.000 6.09 0.00 40.39 4.58
994 1033 1.531739 TTCCCGTTGGCCATTTCAGC 61.532 55.000 6.09 0.00 0.00 4.26
1194 1233 2.840974 CGACTCGCAGATGGGTTTT 58.159 52.632 0.00 0.00 33.89 2.43
1263 1302 2.037527 GGGTCGACTGGGAGGAGT 59.962 66.667 16.46 0.00 0.00 3.85
1320 1359 3.050275 GGCAGCACCTTGTCGTCC 61.050 66.667 0.00 0.00 34.51 4.79
1372 1411 3.213402 CGCCCTCTCCTCGACCTC 61.213 72.222 0.00 0.00 0.00 3.85
1465 1504 2.432628 GTCGTCACCGCCCAAGAG 60.433 66.667 0.00 0.00 0.00 2.85
1711 1754 2.808206 GGTCTCCATGCCTACCGGG 61.808 68.421 6.32 0.00 38.36 5.73
1742 1785 6.594788 AAATGGACATGCAAATAGACAACT 57.405 33.333 0.00 0.00 0.00 3.16
1779 1846 2.683362 GCCACCCTGCTACTTTCATTAC 59.317 50.000 0.00 0.00 0.00 1.89
1788 1855 2.983879 ATGTGGGCCACCCTGCTAC 61.984 63.158 32.61 6.90 45.70 3.58
1790 1857 4.371417 CATGTGGGCCACCCTGCT 62.371 66.667 32.61 10.29 45.70 4.24
1799 1866 4.916983 TTAGCATTATTGACATGTGGGC 57.083 40.909 1.15 0.00 0.00 5.36
1803 1870 6.865411 TGCATGTTTAGCATTATTGACATGT 58.135 32.000 0.00 0.00 43.67 3.21
1806 1873 6.812656 CCTTTGCATGTTTAGCATTATTGACA 59.187 34.615 0.00 0.00 42.33 3.58
1807 1874 6.813152 ACCTTTGCATGTTTAGCATTATTGAC 59.187 34.615 0.00 0.00 42.33 3.18
1808 1875 6.934056 ACCTTTGCATGTTTAGCATTATTGA 58.066 32.000 0.00 0.00 42.33 2.57
1809 1876 7.599630 AACCTTTGCATGTTTAGCATTATTG 57.400 32.000 0.00 0.00 42.33 1.90
1810 1877 9.889128 ATAAACCTTTGCATGTTTAGCATTATT 57.111 25.926 16.71 2.62 42.33 1.40
1811 1878 9.533253 GATAAACCTTTGCATGTTTAGCATTAT 57.467 29.630 19.09 7.13 40.93 1.28
1812 1879 8.748412 AGATAAACCTTTGCATGTTTAGCATTA 58.252 29.630 22.85 6.35 42.67 1.90
1813 1880 7.614494 AGATAAACCTTTGCATGTTTAGCATT 58.386 30.769 22.85 9.71 42.67 3.56
1814 1881 7.174107 AGATAAACCTTTGCATGTTTAGCAT 57.826 32.000 22.85 10.50 42.67 3.79
1815 1882 6.588719 AGATAAACCTTTGCATGTTTAGCA 57.411 33.333 22.85 7.35 42.67 3.49
1816 1883 7.889589 AAAGATAAACCTTTGCATGTTTAGC 57.110 32.000 17.51 17.51 41.33 3.09
1817 1884 9.474920 TGAAAAGATAAACCTTTGCATGTTTAG 57.525 29.630 16.71 0.24 39.51 1.85
1818 1885 9.823647 TTGAAAAGATAAACCTTTGCATGTTTA 57.176 25.926 15.00 15.00 40.37 2.01
1819 1886 8.729805 TTGAAAAGATAAACCTTTGCATGTTT 57.270 26.923 12.35 12.35 40.37 2.83
1820 1887 8.611757 GTTTGAAAAGATAAACCTTTGCATGTT 58.388 29.630 0.00 0.00 40.37 2.71
1821 1888 7.986889 AGTTTGAAAAGATAAACCTTTGCATGT 59.013 29.630 0.00 0.00 40.37 3.21
1822 1889 8.369218 AGTTTGAAAAGATAAACCTTTGCATG 57.631 30.769 0.00 0.00 40.37 4.06
1824 1891 9.308318 GTTAGTTTGAAAAGATAAACCTTTGCA 57.692 29.630 0.00 0.00 39.31 4.08
1825 1892 9.529325 AGTTAGTTTGAAAAGATAAACCTTTGC 57.471 29.630 0.00 0.00 37.47 3.68
1834 1901 9.939802 GGAGAGGTTAGTTAGTTTGAAAAGATA 57.060 33.333 0.00 0.00 0.00 1.98
1835 1902 7.883833 GGGAGAGGTTAGTTAGTTTGAAAAGAT 59.116 37.037 0.00 0.00 0.00 2.40
1836 1903 7.222161 GGGAGAGGTTAGTTAGTTTGAAAAGA 58.778 38.462 0.00 0.00 0.00 2.52
1837 1904 6.430308 GGGGAGAGGTTAGTTAGTTTGAAAAG 59.570 42.308 0.00 0.00 0.00 2.27
1838 1905 6.301486 GGGGAGAGGTTAGTTAGTTTGAAAA 58.699 40.000 0.00 0.00 0.00 2.29
1839 1906 5.221986 GGGGGAGAGGTTAGTTAGTTTGAAA 60.222 44.000 0.00 0.00 0.00 2.69
1840 1907 4.287845 GGGGGAGAGGTTAGTTAGTTTGAA 59.712 45.833 0.00 0.00 0.00 2.69
1841 1908 3.842436 GGGGGAGAGGTTAGTTAGTTTGA 59.158 47.826 0.00 0.00 0.00 2.69
1842 1909 3.844804 AGGGGGAGAGGTTAGTTAGTTTG 59.155 47.826 0.00 0.00 0.00 2.93
1843 1910 3.844804 CAGGGGGAGAGGTTAGTTAGTTT 59.155 47.826 0.00 0.00 0.00 2.66
1844 1911 3.078612 TCAGGGGGAGAGGTTAGTTAGTT 59.921 47.826 0.00 0.00 0.00 2.24
1845 1912 2.658489 TCAGGGGGAGAGGTTAGTTAGT 59.342 50.000 0.00 0.00 0.00 2.24
1846 1913 3.399952 TCAGGGGGAGAGGTTAGTTAG 57.600 52.381 0.00 0.00 0.00 2.34
1847 1914 4.363546 AATCAGGGGGAGAGGTTAGTTA 57.636 45.455 0.00 0.00 0.00 2.24
1848 1915 2.972153 ATCAGGGGGAGAGGTTAGTT 57.028 50.000 0.00 0.00 0.00 2.24
1849 1916 2.972153 AATCAGGGGGAGAGGTTAGT 57.028 50.000 0.00 0.00 0.00 2.24
1850 1917 3.523564 TGAAAATCAGGGGGAGAGGTTAG 59.476 47.826 0.00 0.00 0.00 2.34
1851 1918 3.537337 TGAAAATCAGGGGGAGAGGTTA 58.463 45.455 0.00 0.00 0.00 2.85
1852 1919 2.358258 TGAAAATCAGGGGGAGAGGTT 58.642 47.619 0.00 0.00 0.00 3.50
1853 1920 2.059756 TGAAAATCAGGGGGAGAGGT 57.940 50.000 0.00 0.00 0.00 3.85
1854 1921 2.423947 CCATGAAAATCAGGGGGAGAGG 60.424 54.545 3.19 0.00 44.05 3.69
1855 1922 2.941480 CCATGAAAATCAGGGGGAGAG 58.059 52.381 3.19 0.00 44.05 3.20
1862 1929 1.488390 CCACCCCCATGAAAATCAGG 58.512 55.000 0.00 0.00 0.00 3.86
1863 1930 0.826062 GCCACCCCCATGAAAATCAG 59.174 55.000 0.00 0.00 0.00 2.90
1864 1931 0.617249 GGCCACCCCCATGAAAATCA 60.617 55.000 0.00 0.00 0.00 2.57
1865 1932 2.211375 GGCCACCCCCATGAAAATC 58.789 57.895 0.00 0.00 0.00 2.17
1866 1933 4.478531 GGCCACCCCCATGAAAAT 57.521 55.556 0.00 0.00 0.00 1.82
1879 1946 2.440196 TTAAGGGGGAGAAGGGGCCA 62.440 60.000 4.39 0.00 0.00 5.36
1880 1947 0.999493 ATTAAGGGGGAGAAGGGGCC 60.999 60.000 0.00 0.00 0.00 5.80
1881 1948 0.478942 GATTAAGGGGGAGAAGGGGC 59.521 60.000 0.00 0.00 0.00 5.80
1882 1949 2.058705 GAGATTAAGGGGGAGAAGGGG 58.941 57.143 0.00 0.00 0.00 4.79
1883 1950 2.058705 GGAGATTAAGGGGGAGAAGGG 58.941 57.143 0.00 0.00 0.00 3.95
1884 1951 2.776665 TGGAGATTAAGGGGGAGAAGG 58.223 52.381 0.00 0.00 0.00 3.46
1885 1952 4.413520 TGATTGGAGATTAAGGGGGAGAAG 59.586 45.833 0.00 0.00 0.00 2.85
1886 1953 4.379875 TGATTGGAGATTAAGGGGGAGAA 58.620 43.478 0.00 0.00 0.00 2.87
1887 1954 4.021007 TGATTGGAGATTAAGGGGGAGA 57.979 45.455 0.00 0.00 0.00 3.71
1888 1955 4.796110 TTGATTGGAGATTAAGGGGGAG 57.204 45.455 0.00 0.00 0.00 4.30
1889 1956 5.269189 GTTTTGATTGGAGATTAAGGGGGA 58.731 41.667 0.00 0.00 0.00 4.81
1890 1957 4.405680 GGTTTTGATTGGAGATTAAGGGGG 59.594 45.833 0.00 0.00 0.00 5.40
1891 1958 4.405680 GGGTTTTGATTGGAGATTAAGGGG 59.594 45.833 0.00 0.00 0.00 4.79
1892 1959 5.022787 TGGGTTTTGATTGGAGATTAAGGG 58.977 41.667 0.00 0.00 0.00 3.95
1893 1960 5.105351 GGTGGGTTTTGATTGGAGATTAAGG 60.105 44.000 0.00 0.00 0.00 2.69
1894 1961 5.716703 AGGTGGGTTTTGATTGGAGATTAAG 59.283 40.000 0.00 0.00 0.00 1.85
1895 1962 5.650283 AGGTGGGTTTTGATTGGAGATTAA 58.350 37.500 0.00 0.00 0.00 1.40
1896 1963 5.269554 AGGTGGGTTTTGATTGGAGATTA 57.730 39.130 0.00 0.00 0.00 1.75
1897 1964 4.132122 AGGTGGGTTTTGATTGGAGATT 57.868 40.909 0.00 0.00 0.00 2.40
1898 1965 3.833559 AGGTGGGTTTTGATTGGAGAT 57.166 42.857 0.00 0.00 0.00 2.75
1899 1966 3.611025 AAGGTGGGTTTTGATTGGAGA 57.389 42.857 0.00 0.00 0.00 3.71
1900 1967 5.245977 ACATAAAGGTGGGTTTTGATTGGAG 59.754 40.000 0.00 0.00 0.00 3.86
1901 1968 5.151454 ACATAAAGGTGGGTTTTGATTGGA 58.849 37.500 0.00 0.00 0.00 3.53
1902 1969 5.482163 ACATAAAGGTGGGTTTTGATTGG 57.518 39.130 0.00 0.00 0.00 3.16
1903 1970 8.894768 TTTTACATAAAGGTGGGTTTTGATTG 57.105 30.769 0.00 0.00 0.00 2.67
1904 1971 7.659799 GCTTTTACATAAAGGTGGGTTTTGATT 59.340 33.333 0.00 0.00 0.00 2.57
1905 1972 7.158697 GCTTTTACATAAAGGTGGGTTTTGAT 58.841 34.615 0.00 0.00 0.00 2.57
1906 1973 6.098409 TGCTTTTACATAAAGGTGGGTTTTGA 59.902 34.615 0.00 0.00 0.00 2.69
1907 1974 6.284459 TGCTTTTACATAAAGGTGGGTTTTG 58.716 36.000 0.00 0.00 0.00 2.44
1908 1975 6.487299 TGCTTTTACATAAAGGTGGGTTTT 57.513 33.333 0.00 0.00 0.00 2.43
1909 1976 6.042666 ACATGCTTTTACATAAAGGTGGGTTT 59.957 34.615 0.00 0.00 0.00 3.27
1910 1977 5.542251 ACATGCTTTTACATAAAGGTGGGTT 59.458 36.000 0.00 0.00 0.00 4.11
1911 1978 5.083821 ACATGCTTTTACATAAAGGTGGGT 58.916 37.500 0.00 0.00 0.00 4.51
1912 1979 5.659440 ACATGCTTTTACATAAAGGTGGG 57.341 39.130 0.00 0.00 0.00 4.61
1913 1980 7.285401 AGGATACATGCTTTTACATAAAGGTGG 59.715 37.037 0.00 0.00 41.41 4.61
1914 1981 8.225603 AGGATACATGCTTTTACATAAAGGTG 57.774 34.615 0.00 0.00 41.41 4.00
1915 1982 8.823220 AAGGATACATGCTTTTACATAAAGGT 57.177 30.769 0.00 0.00 34.65 3.50
1927 1994 5.001232 ACACGTACAAAAGGATACATGCTT 58.999 37.500 0.00 0.00 40.34 3.91
1928 1995 4.575885 ACACGTACAAAAGGATACATGCT 58.424 39.130 0.00 0.00 41.41 3.79
1929 1996 4.939509 ACACGTACAAAAGGATACATGC 57.060 40.909 0.00 0.00 41.41 4.06
1930 1997 5.579119 TGCTACACGTACAAAAGGATACATG 59.421 40.000 0.00 0.00 41.41 3.21
1931 1998 5.726397 TGCTACACGTACAAAAGGATACAT 58.274 37.500 0.00 0.00 41.41 2.29
1932 1999 5.136816 TGCTACACGTACAAAAGGATACA 57.863 39.130 0.00 0.00 41.41 2.29
1933 2000 6.657836 AATGCTACACGTACAAAAGGATAC 57.342 37.500 0.00 0.00 0.00 2.24
1934 2001 7.549839 AGTAATGCTACACGTACAAAAGGATA 58.450 34.615 0.00 0.00 0.00 2.59
1935 2002 6.403878 AGTAATGCTACACGTACAAAAGGAT 58.596 36.000 0.00 0.00 0.00 3.24
1936 2003 5.786311 AGTAATGCTACACGTACAAAAGGA 58.214 37.500 0.00 0.00 0.00 3.36
1937 2004 5.063060 GGAGTAATGCTACACGTACAAAAGG 59.937 44.000 0.00 0.00 0.00 3.11
1938 2005 5.063060 GGGAGTAATGCTACACGTACAAAAG 59.937 44.000 0.00 0.00 0.00 2.27
1939 2006 4.931002 GGGAGTAATGCTACACGTACAAAA 59.069 41.667 0.00 0.00 0.00 2.44
1940 2007 4.497300 GGGAGTAATGCTACACGTACAAA 58.503 43.478 0.00 0.00 0.00 2.83
1941 2008 3.119029 GGGGAGTAATGCTACACGTACAA 60.119 47.826 0.00 0.00 0.00 2.41
1942 2009 2.428171 GGGGAGTAATGCTACACGTACA 59.572 50.000 0.00 0.00 0.00 2.90
1943 2010 2.223900 GGGGGAGTAATGCTACACGTAC 60.224 54.545 0.00 0.00 29.95 3.67
1944 2011 2.034124 GGGGGAGTAATGCTACACGTA 58.966 52.381 0.00 0.00 29.95 3.57
1945 2012 0.828677 GGGGGAGTAATGCTACACGT 59.171 55.000 0.00 0.00 29.95 4.49
1946 2013 3.680842 GGGGGAGTAATGCTACACG 57.319 57.895 0.00 0.00 29.95 4.49
1961 2028 6.314120 TCCTCAACAATGATAAATATGGGGG 58.686 40.000 0.00 0.00 34.37 5.40
1962 2029 7.838079 TTCCTCAACAATGATAAATATGGGG 57.162 36.000 0.00 0.00 34.37 4.96
1963 2030 9.918630 GATTTCCTCAACAATGATAAATATGGG 57.081 33.333 0.00 0.00 34.08 4.00
1964 2031 9.616634 CGATTTCCTCAACAATGATAAATATGG 57.383 33.333 0.00 0.00 34.08 2.74
1975 2042 5.768164 ACCACTTAACGATTTCCTCAACAAT 59.232 36.000 0.00 0.00 0.00 2.71
2002 2069 1.070758 ACTCGTCAGTCAACCAAGCAT 59.929 47.619 0.00 0.00 0.00 3.79
2007 2074 1.254026 CCCTACTCGTCAGTCAACCA 58.746 55.000 0.00 0.00 33.62 3.67
2012 2079 5.183522 CCTATTAATCCCCTACTCGTCAGTC 59.816 48.000 0.00 0.00 33.62 3.51
2045 2112 4.705507 TGCAATAAATGGCCGGTTAACTTA 59.294 37.500 1.90 0.00 0.00 2.24
2053 2120 4.724074 ATATCATGCAATAAATGGCCGG 57.276 40.909 0.00 0.00 0.00 6.13
2054 2121 7.030075 TGATATATCATGCAATAAATGGCCG 57.970 36.000 11.49 0.00 0.00 6.13
2082 2158 1.582610 GGCTGACCGATTCGCCAAAA 61.583 55.000 0.00 0.00 41.13 2.44
2089 2165 2.100605 ACTCTTTGGCTGACCGATTC 57.899 50.000 0.00 0.00 39.70 2.52
2091 2167 2.766263 TCATACTCTTTGGCTGACCGAT 59.234 45.455 0.00 0.00 39.70 4.18
2104 2180 9.686683 AGTTAAGTTGCCAATTAATCATACTCT 57.313 29.630 0.00 0.00 0.00 3.24
2176 2252 9.982651 GTATACAATACAGAGAAAATCTAGCCA 57.017 33.333 0.00 0.00 36.10 4.75
2382 2458 4.423625 AGTCCAAATAGTAGGGTGCATC 57.576 45.455 0.00 0.00 0.00 3.91
2383 2459 4.862641 AAGTCCAAATAGTAGGGTGCAT 57.137 40.909 0.00 0.00 0.00 3.96
2384 2460 4.650972 AAAGTCCAAATAGTAGGGTGCA 57.349 40.909 0.00 0.00 0.00 4.57
2385 2461 7.338449 TGAATAAAAGTCCAAATAGTAGGGTGC 59.662 37.037 0.00 0.00 0.00 5.01
2422 2498 3.505464 AATTAAGGACCACGAGTCTCG 57.495 47.619 20.57 20.57 45.54 4.04
2423 2499 7.845066 AATTTAATTAAGGACCACGAGTCTC 57.155 36.000 9.58 0.00 45.54 3.36
2544 2620 6.487299 ACTTAAGCCCATTAGACCTAAGAG 57.513 41.667 1.29 0.00 0.00 2.85
2564 2640 1.222115 GACTGTTCTCGCGCCAACTT 61.222 55.000 17.42 7.61 0.00 2.66
2587 2663 8.367660 TGAGATGATGAACTAGACTAACCTTT 57.632 34.615 0.00 0.00 0.00 3.11
2599 2675 5.429762 TCCTTGGGTTATGAGATGATGAACT 59.570 40.000 0.00 0.00 0.00 3.01
2641 2717 3.955650 TTCTGAGCCGCTAAGTTAACT 57.044 42.857 1.12 1.12 0.00 2.24
2673 2749 2.668457 CGGAAGCTACACACAAGTCATC 59.332 50.000 0.00 0.00 0.00 2.92
2674 2750 2.299013 TCGGAAGCTACACACAAGTCAT 59.701 45.455 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.