Multiple sequence alignment - TraesCS4A01G428200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G428200 chr4A 100.000 3983 0 0 1 3983 698936444 698932462 0.000000e+00 7356.0
1 TraesCS4A01G428200 chr4A 92.410 2398 172 6 742 3131 698171367 698168972 0.000000e+00 3411.0
2 TraesCS4A01G428200 chr4A 89.232 2006 145 31 1114 3101 698921088 698919136 0.000000e+00 2442.0
3 TraesCS4A01G428200 chr4A 91.116 1756 138 9 1388 3131 698804979 698803230 0.000000e+00 2362.0
4 TraesCS4A01G428200 chr4A 94.890 1135 50 2 704 1836 698827013 698825885 0.000000e+00 1768.0
5 TraesCS4A01G428200 chr4A 88.656 908 92 5 2184 3082 698926088 698925183 0.000000e+00 1096.0
6 TraesCS4A01G428200 chr4A 88.406 414 42 2 2515 2922 699019902 699020315 9.940000e-136 494.0
7 TraesCS4A01G428200 chr4A 91.441 222 19 0 3660 3881 698910264 698910043 5.000000e-79 305.0
8 TraesCS4A01G428200 chr4A 90.541 222 21 0 3660 3881 698167399 698167178 1.080000e-75 294.0
9 TraesCS4A01G428200 chr4A 88.546 227 18 4 3660 3881 698168817 698168594 6.560000e-68 268.0
10 TraesCS4A01G428200 chr4A 94.815 135 7 0 3660 3794 698825606 698825472 1.120000e-50 211.0
11 TraesCS4A01G428200 chr4A 93.860 114 7 0 3870 3983 250740966 250741079 5.290000e-39 172.0
12 TraesCS4A01G428200 chr4A 95.370 108 5 0 1 108 698827117 698827010 5.290000e-39 172.0
13 TraesCS4A01G428200 chr4A 85.567 97 11 3 3285 3381 698168913 698168820 9.110000e-17 99.0
14 TraesCS4A01G428200 chr4A 84.884 86 11 2 3794 3879 698824338 698824255 7.090000e-13 86.1
15 TraesCS4A01G428200 chr4A 83.158 95 10 2 3287 3381 698825697 698825609 9.170000e-12 82.4
16 TraesCS4A01G428200 chr7D 90.660 2409 173 23 742 3131 30264086 30266461 0.000000e+00 3155.0
17 TraesCS4A01G428200 chr7D 88.267 733 68 6 1754 2468 30130754 30130022 0.000000e+00 861.0
18 TraesCS4A01G428200 chr7D 89.198 611 38 12 771 1369 30246300 30246894 0.000000e+00 737.0
19 TraesCS4A01G428200 chr7D 88.075 587 60 5 2355 2933 30104585 30105169 0.000000e+00 688.0
20 TraesCS4A01G428200 chr7D 89.231 390 41 1 2501 2890 30130022 30129634 1.660000e-133 486.0
21 TraesCS4A01G428200 chr7D 83.725 510 53 18 992 1498 30142189 30141707 4.690000e-124 455.0
22 TraesCS4A01G428200 chr7D 80.784 536 56 27 992 1512 30103473 30103976 3.760000e-100 375.0
23 TraesCS4A01G428200 chr7D 88.584 219 22 3 3654 3871 30266920 30267136 3.050000e-66 263.0
24 TraesCS4A01G428200 chr7A 89.833 2390 165 19 742 3124 30650945 30653263 0.000000e+00 2996.0
25 TraesCS4A01G428200 chr7A 98.233 283 5 0 3378 3660 643599812 643599530 2.760000e-136 496.0
26 TraesCS4A01G428200 chr7A 90.184 163 15 1 742 903 30501234 30501072 1.120000e-50 211.0
27 TraesCS4A01G428200 chr7A 94.495 109 5 1 3869 3977 246344205 246344312 2.460000e-37 167.0
28 TraesCS4A01G428200 chr2B 81.468 1975 246 57 1038 2922 676746707 676748651 0.000000e+00 1509.0
29 TraesCS4A01G428200 chr2B 90.651 599 33 7 107 704 48289462 48288886 0.000000e+00 774.0
30 TraesCS4A01G428200 chr2B 87.302 63 5 3 3798 3858 7588177 7588116 7.140000e-08 69.4
31 TraesCS4A01G428200 chr2D 81.323 1981 238 69 1034 2924 565076554 565078492 0.000000e+00 1487.0
32 TraesCS4A01G428200 chr2D 81.272 1981 239 69 1034 2924 565051885 565053823 0.000000e+00 1482.0
33 TraesCS4A01G428200 chr2D 81.010 1980 239 72 1034 2922 565089909 565091842 0.000000e+00 1447.0
34 TraesCS4A01G428200 chr2D 84.229 279 36 5 2247 2524 523387447 523387176 8.490000e-67 265.0
35 TraesCS4A01G428200 chr2D 94.737 114 5 1 3870 3983 129960335 129960223 4.090000e-40 176.0
36 TraesCS4A01G428200 chr2D 81.890 127 18 3 3860 3983 121700292 121700168 7.040000e-18 102.0
37 TraesCS4A01G428200 chr2D 86.957 69 9 0 3770 3838 483870932 483871000 1.190000e-10 78.7
38 TraesCS4A01G428200 chr2D 77.778 126 20 5 2317 2442 650044753 650044636 1.990000e-08 71.3
39 TraesCS4A01G428200 chr2A 81.124 1992 243 70 1034 2922 705530960 705532921 0.000000e+00 1472.0
40 TraesCS4A01G428200 chr2A 98.221 281 5 0 3378 3658 773800400 773800680 3.580000e-135 492.0
41 TraesCS4A01G428200 chr2A 94.545 110 6 0 3874 3983 195823438 195823329 1.900000e-38 171.0
42 TraesCS4A01G428200 chr3B 92.691 602 30 5 107 707 562781536 562782124 0.000000e+00 856.0
43 TraesCS4A01G428200 chr3B 93.767 369 11 9 105 462 365288250 365288617 9.730000e-151 544.0
44 TraesCS4A01G428200 chr3B 90.640 406 31 7 301 704 158206683 158206283 2.110000e-147 532.0
45 TraesCS4A01G428200 chr3B 98.214 280 5 0 3379 3658 633383839 633384118 1.290000e-134 490.0
46 TraesCS4A01G428200 chr3B 85.938 64 5 4 3798 3859 754971943 754971882 9.240000e-07 65.8
47 TraesCS4A01G428200 chr7B 91.080 639 29 8 94 704 614831512 614830874 0.000000e+00 839.0
48 TraesCS4A01G428200 chr7B 91.542 603 41 7 108 704 604111114 604111712 0.000000e+00 822.0
49 TraesCS4A01G428200 chr7B 91.225 604 29 3 105 707 467536117 467535537 0.000000e+00 800.0
50 TraesCS4A01G428200 chr7B 94.118 391 19 2 108 494 219593040 219593430 3.430000e-165 592.0
51 TraesCS4A01G428200 chr7B 92.157 408 23 8 104 505 551062359 551062763 5.780000e-158 568.0
52 TraesCS4A01G428200 chr7B 97.552 286 6 1 3378 3663 667145110 667145394 4.630000e-134 488.0
53 TraesCS4A01G428200 chr7B 93.913 115 4 3 3870 3983 327254726 327254838 1.900000e-38 171.0
54 TraesCS4A01G428200 chr5B 90.248 605 41 13 107 704 490299072 490298479 0.000000e+00 774.0
55 TraesCS4A01G428200 chr5B 93.578 327 19 2 379 704 270325999 270326324 1.660000e-133 486.0
56 TraesCS4A01G428200 chr5B 84.507 71 9 2 3777 3846 526520690 526520621 7.140000e-08 69.4
57 TraesCS4A01G428200 chr5B 80.208 96 9 10 3778 3866 540698556 540698648 3.320000e-06 63.9
58 TraesCS4A01G428200 chr6B 89.274 606 31 13 105 706 560806017 560805442 0.000000e+00 728.0
59 TraesCS4A01G428200 chr6B 94.627 335 14 4 105 438 715194288 715193957 2.120000e-142 516.0
60 TraesCS4A01G428200 chr6B 97.887 284 5 1 3379 3662 279087145 279087427 1.290000e-134 490.0
61 TraesCS4A01G428200 chr6B 97.241 290 6 2 3379 3668 680301075 680300788 1.290000e-134 490.0
62 TraesCS4A01G428200 chr6B 84.298 121 17 2 3864 3983 25044202 25044083 2.510000e-22 117.0
63 TraesCS4A01G428200 chr4B 92.183 371 16 2 341 710 598265131 598264773 2.750000e-141 512.0
64 TraesCS4A01G428200 chr1B 92.571 350 24 2 355 703 61433062 61433410 5.940000e-138 501.0
65 TraesCS4A01G428200 chr1B 89.446 379 31 8 329 703 61442483 61442856 1.680000e-128 470.0
66 TraesCS4A01G428200 chr3A 98.227 282 5 0 3378 3659 55724277 55724558 9.940000e-136 494.0
67 TraesCS4A01G428200 chr3A 88.060 134 13 3 3850 3983 66506812 66506682 5.330000e-34 156.0
68 TraesCS4A01G428200 chr3A 84.783 138 16 5 3848 3983 723464444 723464578 2.500000e-27 134.0
69 TraesCS4A01G428200 chr6A 98.214 280 5 0 3379 3658 554872004 554871725 1.290000e-134 490.0
70 TraesCS4A01G428200 chr5A 97.561 287 6 1 3379 3664 325639578 325639864 1.290000e-134 490.0
71 TraesCS4A01G428200 chr5A 93.860 114 7 0 3870 3983 436098730 436098617 5.290000e-39 172.0
72 TraesCS4A01G428200 chr5A 87.395 119 11 4 3857 3974 547167942 547168057 2.500000e-27 134.0
73 TraesCS4A01G428200 chr6D 95.455 110 5 0 3874 3983 297471392 297471283 4.090000e-40 176.0
74 TraesCS4A01G428200 chr3D 93.913 115 6 1 3870 3983 181652618 181652504 5.290000e-39 172.0
75 TraesCS4A01G428200 chr1D 82.609 138 19 5 3842 3975 60395994 60395858 2.510000e-22 117.0
76 TraesCS4A01G428200 chrUn 90.278 72 6 1 3859 3929 30323119 30323190 4.240000e-15 93.5
77 TraesCS4A01G428200 chrUn 91.304 69 5 1 3862 3929 375482393 375482325 4.240000e-15 93.5
78 TraesCS4A01G428200 chr5D 87.013 77 7 3 3854 3929 498722088 498722014 2.550000e-12 84.2
79 TraesCS4A01G428200 chr5D 89.231 65 5 2 3798 3860 2560841 2560777 3.300000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G428200 chr4A 698932462 698936444 3982 True 7356.0 7356 100.0000 1 3983 1 chr4A.!!$R5 3982
1 TraesCS4A01G428200 chr4A 698919136 698921088 1952 True 2442.0 2442 89.2320 1114 3101 1 chr4A.!!$R3 1987
2 TraesCS4A01G428200 chr4A 698803230 698804979 1749 True 2362.0 2362 91.1160 1388 3131 1 chr4A.!!$R1 1743
3 TraesCS4A01G428200 chr4A 698925183 698926088 905 True 1096.0 1096 88.6560 2184 3082 1 chr4A.!!$R4 898
4 TraesCS4A01G428200 chr4A 698167178 698171367 4189 True 1018.0 3411 89.2660 742 3881 4 chr4A.!!$R6 3139
5 TraesCS4A01G428200 chr4A 698824255 698827117 2862 True 463.9 1768 90.6234 1 3879 5 chr4A.!!$R7 3878
6 TraesCS4A01G428200 chr7D 30264086 30267136 3050 False 1709.0 3155 89.6220 742 3871 2 chr7D.!!$F3 3129
7 TraesCS4A01G428200 chr7D 30246300 30246894 594 False 737.0 737 89.1980 771 1369 1 chr7D.!!$F1 598
8 TraesCS4A01G428200 chr7D 30129634 30130754 1120 True 673.5 861 88.7490 1754 2890 2 chr7D.!!$R2 1136
9 TraesCS4A01G428200 chr7D 30103473 30105169 1696 False 531.5 688 84.4295 992 2933 2 chr7D.!!$F2 1941
10 TraesCS4A01G428200 chr7A 30650945 30653263 2318 False 2996.0 2996 89.8330 742 3124 1 chr7A.!!$F1 2382
11 TraesCS4A01G428200 chr2B 676746707 676748651 1944 False 1509.0 1509 81.4680 1038 2922 1 chr2B.!!$F1 1884
12 TraesCS4A01G428200 chr2B 48288886 48289462 576 True 774.0 774 90.6510 107 704 1 chr2B.!!$R2 597
13 TraesCS4A01G428200 chr2D 565076554 565078492 1938 False 1487.0 1487 81.3230 1034 2924 1 chr2D.!!$F3 1890
14 TraesCS4A01G428200 chr2D 565051885 565053823 1938 False 1482.0 1482 81.2720 1034 2924 1 chr2D.!!$F2 1890
15 TraesCS4A01G428200 chr2D 565089909 565091842 1933 False 1447.0 1447 81.0100 1034 2922 1 chr2D.!!$F4 1888
16 TraesCS4A01G428200 chr2A 705530960 705532921 1961 False 1472.0 1472 81.1240 1034 2922 1 chr2A.!!$F1 1888
17 TraesCS4A01G428200 chr3B 562781536 562782124 588 False 856.0 856 92.6910 107 707 1 chr3B.!!$F2 600
18 TraesCS4A01G428200 chr7B 614830874 614831512 638 True 839.0 839 91.0800 94 704 1 chr7B.!!$R2 610
19 TraesCS4A01G428200 chr7B 604111114 604111712 598 False 822.0 822 91.5420 108 704 1 chr7B.!!$F4 596
20 TraesCS4A01G428200 chr7B 467535537 467536117 580 True 800.0 800 91.2250 105 707 1 chr7B.!!$R1 602
21 TraesCS4A01G428200 chr5B 490298479 490299072 593 True 774.0 774 90.2480 107 704 1 chr5B.!!$R1 597
22 TraesCS4A01G428200 chr6B 560805442 560806017 575 True 728.0 728 89.2740 105 706 1 chr6B.!!$R2 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 533 1.336240 CGGTTCGTTCTACCTCGGTTT 60.336 52.381 0.0 0.0 33.35 3.27 F
2060 2287 1.473434 GGCTACATCAGGTTTCTCGGG 60.473 57.143 0.0 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2383 3165 0.320421 TTCTTGTGCACGTAGGGAGC 60.320 55.0 13.13 0.0 0.0 4.70 R
3635 4749 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.0 0.00 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.682292 AAGCAATCGCCCTCCCGTC 62.682 63.158 0.00 0.00 39.83 4.79
58 59 2.438951 TTTCGCTACGTGGTGGACCC 62.439 60.000 12.79 0.00 34.29 4.46
60 61 2.939261 CGCTACGTGGTGGACCCTT 61.939 63.158 4.31 0.00 34.29 3.95
239 242 8.324191 TGGGACTTATCAAATAAGACTCTCAT 57.676 34.615 12.43 0.00 43.85 2.90
496 524 1.601419 CCCTGCCTCGGTTCGTTCTA 61.601 60.000 0.00 0.00 0.00 2.10
505 533 1.336240 CGGTTCGTTCTACCTCGGTTT 60.336 52.381 0.00 0.00 33.35 3.27
562 590 3.921767 CTGAGCCTCGTTGCAGCGA 62.922 63.158 24.32 24.32 39.22 4.93
649 678 8.204903 TGTAAACAAACAGGTAGGGACTTATA 57.795 34.615 0.00 0.00 41.75 0.98
651 680 7.991084 AAACAAACAGGTAGGGACTTATAAC 57.009 36.000 0.00 0.00 41.75 1.89
867 896 2.125188 GTCCAGCCAGCTGAGCTC 60.125 66.667 22.12 6.82 46.30 4.09
868 897 2.284478 TCCAGCCAGCTGAGCTCT 60.284 61.111 22.12 0.00 46.30 4.09
869 898 1.917282 TCCAGCCAGCTGAGCTCTT 60.917 57.895 22.12 4.59 46.30 2.85
870 899 1.745864 CCAGCCAGCTGAGCTCTTG 60.746 63.158 22.12 14.28 46.30 3.02
871 900 2.046120 AGCCAGCTGAGCTCTTGC 60.046 61.111 17.39 18.27 36.40 4.01
872 901 3.497932 GCCAGCTGAGCTCTTGCG 61.498 66.667 17.39 13.95 45.42 4.85
1440 1530 4.106925 CTCTCCACCTGCCAGGCC 62.107 72.222 11.63 0.00 39.63 5.19
1488 1604 3.463585 GACATCCACCCCGGCGTA 61.464 66.667 6.01 0.00 33.14 4.42
1731 1848 1.577328 CGTCTCAAATGGCGGCAGTT 61.577 55.000 19.53 19.53 0.00 3.16
1899 2053 3.264897 CTATGGCGTCGGTGCTGC 61.265 66.667 0.00 0.00 34.52 5.25
2060 2287 1.473434 GGCTACATCAGGTTTCTCGGG 60.473 57.143 0.00 0.00 0.00 5.14
2379 3161 2.433868 ACTACCTGCACAACTACACG 57.566 50.000 0.00 0.00 0.00 4.49
2383 3165 1.282248 CCTGCACAACTACACGGACG 61.282 60.000 0.00 0.00 0.00 4.79
2424 3206 2.039480 TCTCAAGAGCAGCAACATCCTT 59.961 45.455 0.00 0.00 0.00 3.36
2428 3210 1.627329 AGAGCAGCAACATCCTTCTCA 59.373 47.619 0.00 0.00 0.00 3.27
2469 3251 1.667830 CTCAAACTTCGGCCTCGCA 60.668 57.895 0.00 0.00 36.13 5.10
2470 3252 1.003839 TCAAACTTCGGCCTCGCAT 60.004 52.632 0.00 0.00 36.13 4.73
2790 3626 1.518572 GGTGACGGCGTTCATCGAT 60.519 57.895 16.19 0.00 42.86 3.59
2841 3677 3.058160 GTGTTGGCCATGCTCGCT 61.058 61.111 6.09 0.00 0.00 4.93
2975 3822 0.828343 ACCTACTATCCTGCTCGGGC 60.828 60.000 0.00 0.00 39.26 6.13
3022 3869 1.419381 TTACACAGAGCAGGTCACCA 58.581 50.000 0.00 0.00 0.00 4.17
3030 3877 2.815211 CAGGTCACCATCGGCGTG 60.815 66.667 6.85 4.55 0.00 5.34
3050 3914 4.566004 GTGTCCTATAGACTTGTGTTGCA 58.434 43.478 0.00 0.00 46.46 4.08
3066 3930 3.762823 TGTTGCAAGCACCATCATCAATA 59.237 39.130 0.00 0.00 0.00 1.90
3138 4014 5.219226 AGACGTCAGTATAGTCTCAAACG 57.781 43.478 19.50 0.00 40.85 3.60
3139 4015 4.934001 AGACGTCAGTATAGTCTCAAACGA 59.066 41.667 19.50 0.00 40.85 3.85
3140 4016 5.063691 AGACGTCAGTATAGTCTCAAACGAG 59.936 44.000 19.50 0.00 40.85 4.18
3168 4282 1.935199 GCAATCGGCCATGAAAAATGG 59.065 47.619 2.24 0.00 41.99 3.16
3177 4291 3.068560 CCATGAAAAATGGTGCAACTGG 58.931 45.455 2.04 0.00 36.74 4.00
3178 4292 2.237393 TGAAAAATGGTGCAACTGGC 57.763 45.000 2.04 0.00 45.13 4.85
3190 4304 1.065551 GCAACTGGCAAAAACGAGAGT 59.934 47.619 0.00 0.00 46.03 3.24
3192 4306 3.242936 GCAACTGGCAAAAACGAGAGTAA 60.243 43.478 0.00 0.00 43.97 2.24
3194 4308 6.731618 GCAACTGGCAAAAACGAGAGTAAAC 61.732 44.000 0.00 0.00 43.97 2.01
3195 4309 8.805451 GCAACTGGCAAAAACGAGAGTAAACT 62.805 42.308 0.00 0.00 43.97 2.66
3205 4319 5.012328 ACGAGAGTAAACTGAATCCATCC 57.988 43.478 0.00 0.00 46.88 3.51
3206 4320 4.466370 ACGAGAGTAAACTGAATCCATCCA 59.534 41.667 0.00 0.00 46.88 3.41
3207 4321 5.129485 ACGAGAGTAAACTGAATCCATCCAT 59.871 40.000 0.00 0.00 46.88 3.41
3208 4322 5.694006 CGAGAGTAAACTGAATCCATCCATC 59.306 44.000 0.00 0.00 0.00 3.51
3209 4323 5.934781 AGAGTAAACTGAATCCATCCATCC 58.065 41.667 0.00 0.00 0.00 3.51
3210 4324 5.429762 AGAGTAAACTGAATCCATCCATCCA 59.570 40.000 0.00 0.00 0.00 3.41
3211 4325 6.102321 AGAGTAAACTGAATCCATCCATCCAT 59.898 38.462 0.00 0.00 0.00 3.41
3212 4326 6.302269 AGTAAACTGAATCCATCCATCCATC 58.698 40.000 0.00 0.00 0.00 3.51
3213 4327 4.801521 AACTGAATCCATCCATCCATCA 57.198 40.909 0.00 0.00 0.00 3.07
3214 4328 4.801521 ACTGAATCCATCCATCCATCAA 57.198 40.909 0.00 0.00 0.00 2.57
3215 4329 5.133383 ACTGAATCCATCCATCCATCAAA 57.867 39.130 0.00 0.00 0.00 2.69
3216 4330 5.521696 ACTGAATCCATCCATCCATCAAAA 58.478 37.500 0.00 0.00 0.00 2.44
3217 4331 5.361857 ACTGAATCCATCCATCCATCAAAAC 59.638 40.000 0.00 0.00 0.00 2.43
3218 4332 4.650588 TGAATCCATCCATCCATCAAAACC 59.349 41.667 0.00 0.00 0.00 3.27
3219 4333 3.754219 TCCATCCATCCATCAAAACCA 57.246 42.857 0.00 0.00 0.00 3.67
3220 4334 4.058417 TCCATCCATCCATCAAAACCAA 57.942 40.909 0.00 0.00 0.00 3.67
3221 4335 4.423913 TCCATCCATCCATCAAAACCAAA 58.576 39.130 0.00 0.00 0.00 3.28
3222 4336 4.842948 TCCATCCATCCATCAAAACCAAAA 59.157 37.500 0.00 0.00 0.00 2.44
3223 4337 5.309020 TCCATCCATCCATCAAAACCAAAAA 59.691 36.000 0.00 0.00 0.00 1.94
3249 4363 8.438676 AAAATATGGTGCAACTCAGTATAGAC 57.561 34.615 2.04 0.00 36.74 2.59
3250 4364 3.503827 TGGTGCAACTCAGTATAGACG 57.496 47.619 2.04 0.00 36.74 4.18
3251 4365 2.823747 TGGTGCAACTCAGTATAGACGT 59.176 45.455 2.04 0.00 36.74 4.34
3252 4366 3.179830 GGTGCAACTCAGTATAGACGTG 58.820 50.000 0.00 0.00 36.74 4.49
3253 4367 3.119602 GGTGCAACTCAGTATAGACGTGA 60.120 47.826 0.00 0.00 36.74 4.35
3254 4368 4.099120 GTGCAACTCAGTATAGACGTGAG 58.901 47.826 12.49 12.49 42.91 3.51
3268 4382 3.777106 ACGTGAGTATAGTATCGGGGA 57.223 47.619 0.00 0.00 46.88 4.81
3269 4383 3.406764 ACGTGAGTATAGTATCGGGGAC 58.593 50.000 0.00 0.00 46.88 4.46
3270 4384 3.181451 ACGTGAGTATAGTATCGGGGACA 60.181 47.826 0.00 0.00 46.88 4.02
3271 4385 3.436015 CGTGAGTATAGTATCGGGGACAG 59.564 52.174 0.00 0.00 0.00 3.51
3272 4386 4.396522 GTGAGTATAGTATCGGGGACAGT 58.603 47.826 0.00 0.00 0.00 3.55
3273 4387 4.826183 GTGAGTATAGTATCGGGGACAGTT 59.174 45.833 0.00 0.00 0.00 3.16
3274 4388 5.301298 GTGAGTATAGTATCGGGGACAGTTT 59.699 44.000 0.00 0.00 0.00 2.66
3275 4389 5.895534 TGAGTATAGTATCGGGGACAGTTTT 59.104 40.000 0.00 0.00 0.00 2.43
3276 4390 6.381994 TGAGTATAGTATCGGGGACAGTTTTT 59.618 38.462 0.00 0.00 0.00 1.94
3277 4391 6.814043 AGTATAGTATCGGGGACAGTTTTTC 58.186 40.000 0.00 0.00 0.00 2.29
3278 4392 5.687166 ATAGTATCGGGGACAGTTTTTCA 57.313 39.130 0.00 0.00 0.00 2.69
3279 4393 4.569719 AGTATCGGGGACAGTTTTTCAT 57.430 40.909 0.00 0.00 0.00 2.57
3280 4394 4.261801 AGTATCGGGGACAGTTTTTCATG 58.738 43.478 0.00 0.00 0.00 3.07
3281 4395 1.243902 TCGGGGACAGTTTTTCATGC 58.756 50.000 0.00 0.00 0.00 4.06
3282 4396 0.958091 CGGGGACAGTTTTTCATGCA 59.042 50.000 0.00 0.00 0.00 3.96
3283 4397 1.339610 CGGGGACAGTTTTTCATGCAA 59.660 47.619 0.00 0.00 0.00 4.08
3298 4412 1.445582 GCAAGATGCTGCAACTGGC 60.446 57.895 21.23 21.23 42.17 4.85
3320 4434 4.335315 GCGTGAGTAAATCCATCCATCAAA 59.665 41.667 0.00 0.00 0.00 2.69
3323 4437 6.564328 GTGAGTAAATCCATCCATCAAAACC 58.436 40.000 0.00 0.00 0.00 3.27
3324 4438 5.656416 TGAGTAAATCCATCCATCAAAACCC 59.344 40.000 0.00 0.00 0.00 4.11
3325 4439 4.962362 AGTAAATCCATCCATCAAAACCCC 59.038 41.667 0.00 0.00 0.00 4.95
3381 4495 1.447643 CCGCCATGGGAGGACTAAG 59.552 63.158 15.13 0.00 45.77 2.18
3382 4496 1.447643 CGCCATGGGAGGACTAAGG 59.552 63.158 15.13 0.00 0.00 2.69
3383 4497 1.149401 GCCATGGGAGGACTAAGGC 59.851 63.158 15.13 0.00 0.00 4.35
3387 4501 0.044855 ATGGGAGGACTAAGGCTGGT 59.955 55.000 0.00 0.00 0.00 4.00
3389 4503 0.617820 GGGAGGACTAAGGCTGGTCA 60.618 60.000 18.24 0.00 34.82 4.02
3392 4506 2.630580 GGAGGACTAAGGCTGGTCATAG 59.369 54.545 18.24 6.04 34.82 2.23
3393 4507 3.301274 GAGGACTAAGGCTGGTCATAGT 58.699 50.000 18.24 8.88 34.82 2.12
3394 4508 3.034635 AGGACTAAGGCTGGTCATAGTG 58.965 50.000 18.24 0.00 34.82 2.74
3395 4509 2.103263 GGACTAAGGCTGGTCATAGTGG 59.897 54.545 18.24 0.00 34.82 4.00
3396 4510 2.103263 GACTAAGGCTGGTCATAGTGGG 59.897 54.545 13.65 0.00 33.40 4.61
3397 4511 1.417890 CTAAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
3398 4512 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
3399 4513 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
3401 4515 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
3402 4516 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
3403 4517 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3404 4518 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
3406 4520 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
3407 4521 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
3410 4524 5.892686 GTCATAGTGGGGAGTAACTTAGAGT 59.107 44.000 0.00 0.00 0.00 3.24
3411 4525 7.059156 GTCATAGTGGGGAGTAACTTAGAGTA 58.941 42.308 0.00 0.00 0.00 2.59
3413 4527 5.533333 AGTGGGGAGTAACTTAGAGTAGT 57.467 43.478 0.00 0.00 0.00 2.73
3414 4528 6.649041 AGTGGGGAGTAACTTAGAGTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
3415 4529 7.037342 AGTGGGGAGTAACTTAGAGTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
3416 4530 6.889177 AGTGGGGAGTAACTTAGAGTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
3417 4531 6.660949 GTGGGGAGTAACTTAGAGTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
3418 4532 7.341512 GTGGGGAGTAACTTAGAGTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
3419 4533 8.560039 TGGGGAGTAACTTAGAGTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
3420 4534 8.845227 GGGGAGTAACTTAGAGTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
3421 4535 9.401058 GGGAGTAACTTAGAGTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
3457 4571 8.483758 AGTTTATGTTACTACCTTCATAGTGGG 58.516 37.037 0.00 0.00 36.09 4.61
3458 4572 7.983166 TTATGTTACTACCTTCATAGTGGGT 57.017 36.000 0.00 0.00 36.09 4.51
3459 4573 9.491406 TTTATGTTACTACCTTCATAGTGGGTA 57.509 33.333 0.00 0.00 36.09 3.69
3464 4578 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
3465 4579 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
3466 4580 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
3467 4581 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
3468 4582 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
3469 4583 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
3470 4584 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
3471 4585 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
3472 4586 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
3473 4587 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
3474 4588 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
3475 4589 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
3476 4590 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
3477 4591 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
3478 4592 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
3497 4611 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
3498 4612 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
3523 4637 7.936496 TTTTGTAGACTCATTATGCATTGGA 57.064 32.000 3.54 0.00 0.00 3.53
3524 4638 7.936496 TTTGTAGACTCATTATGCATTGGAA 57.064 32.000 3.54 0.00 0.00 3.53
3525 4639 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
3526 4640 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
3527 4641 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
3528 4642 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
3529 4643 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
3530 4644 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
3531 4645 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
3532 4646 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
3533 4647 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
3534 4648 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
3535 4649 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
3536 4650 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
3537 4651 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
3538 4652 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
3539 4653 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
3540 4654 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
3541 4655 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
3542 4656 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
3543 4657 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
3572 4686 8.732746 TTATGTTACTCTATTTGCCTCTTTCC 57.267 34.615 0.00 0.00 0.00 3.13
3573 4687 6.374417 TGTTACTCTATTTGCCTCTTTCCT 57.626 37.500 0.00 0.00 0.00 3.36
3574 4688 6.407202 TGTTACTCTATTTGCCTCTTTCCTC 58.593 40.000 0.00 0.00 0.00 3.71
3575 4689 6.013725 TGTTACTCTATTTGCCTCTTTCCTCA 60.014 38.462 0.00 0.00 0.00 3.86
3576 4690 5.707066 ACTCTATTTGCCTCTTTCCTCAT 57.293 39.130 0.00 0.00 0.00 2.90
3577 4691 6.072199 ACTCTATTTGCCTCTTTCCTCATT 57.928 37.500 0.00 0.00 0.00 2.57
3578 4692 7.200434 ACTCTATTTGCCTCTTTCCTCATTA 57.800 36.000 0.00 0.00 0.00 1.90
3579 4693 7.633789 ACTCTATTTGCCTCTTTCCTCATTAA 58.366 34.615 0.00 0.00 0.00 1.40
3580 4694 7.554476 ACTCTATTTGCCTCTTTCCTCATTAAC 59.446 37.037 0.00 0.00 0.00 2.01
3581 4695 7.633789 TCTATTTGCCTCTTTCCTCATTAACT 58.366 34.615 0.00 0.00 0.00 2.24
3582 4696 8.768397 TCTATTTGCCTCTTTCCTCATTAACTA 58.232 33.333 0.00 0.00 0.00 2.24
3583 4697 7.631717 ATTTGCCTCTTTCCTCATTAACTAC 57.368 36.000 0.00 0.00 0.00 2.73
3584 4698 6.374417 TTGCCTCTTTCCTCATTAACTACT 57.626 37.500 0.00 0.00 0.00 2.57
3585 4699 6.374417 TGCCTCTTTCCTCATTAACTACTT 57.626 37.500 0.00 0.00 0.00 2.24
3586 4700 6.173339 TGCCTCTTTCCTCATTAACTACTTG 58.827 40.000 0.00 0.00 0.00 3.16
3587 4701 5.065346 GCCTCTTTCCTCATTAACTACTTGC 59.935 44.000 0.00 0.00 0.00 4.01
3588 4702 5.586643 CCTCTTTCCTCATTAACTACTTGCC 59.413 44.000 0.00 0.00 0.00 4.52
3589 4703 6.121776 TCTTTCCTCATTAACTACTTGCCA 57.878 37.500 0.00 0.00 0.00 4.92
3590 4704 5.938125 TCTTTCCTCATTAACTACTTGCCAC 59.062 40.000 0.00 0.00 0.00 5.01
3591 4705 4.901197 TCCTCATTAACTACTTGCCACA 57.099 40.909 0.00 0.00 0.00 4.17
3592 4706 5.435686 TCCTCATTAACTACTTGCCACAT 57.564 39.130 0.00 0.00 0.00 3.21
3593 4707 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
3594 4708 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
3595 4709 5.065218 CCTCATTAACTACTTGCCACATCAC 59.935 44.000 0.00 0.00 0.00 3.06
3596 4710 4.941263 TCATTAACTACTTGCCACATCACC 59.059 41.667 0.00 0.00 0.00 4.02
3597 4711 2.949177 AACTACTTGCCACATCACCA 57.051 45.000 0.00 0.00 0.00 4.17
3598 4712 3.439857 AACTACTTGCCACATCACCAT 57.560 42.857 0.00 0.00 0.00 3.55
3599 4713 3.439857 ACTACTTGCCACATCACCATT 57.560 42.857 0.00 0.00 0.00 3.16
3600 4714 3.766545 ACTACTTGCCACATCACCATTT 58.233 40.909 0.00 0.00 0.00 2.32
3601 4715 4.151883 ACTACTTGCCACATCACCATTTT 58.848 39.130 0.00 0.00 0.00 1.82
3602 4716 4.588528 ACTACTTGCCACATCACCATTTTT 59.411 37.500 0.00 0.00 0.00 1.94
3603 4717 3.731089 ACTTGCCACATCACCATTTTTG 58.269 40.909 0.00 0.00 0.00 2.44
3604 4718 2.166821 TGCCACATCACCATTTTTGC 57.833 45.000 0.00 0.00 0.00 3.68
3605 4719 1.693062 TGCCACATCACCATTTTTGCT 59.307 42.857 0.00 0.00 0.00 3.91
3606 4720 2.104451 TGCCACATCACCATTTTTGCTT 59.896 40.909 0.00 0.00 0.00 3.91
3607 4721 3.323115 TGCCACATCACCATTTTTGCTTA 59.677 39.130 0.00 0.00 0.00 3.09
3608 4722 4.020396 TGCCACATCACCATTTTTGCTTAT 60.020 37.500 0.00 0.00 0.00 1.73
3609 4723 4.330620 GCCACATCACCATTTTTGCTTATG 59.669 41.667 0.00 0.00 0.00 1.90
3610 4724 5.481105 CCACATCACCATTTTTGCTTATGT 58.519 37.500 0.00 0.00 0.00 2.29
3611 4725 5.349270 CCACATCACCATTTTTGCTTATGTG 59.651 40.000 0.00 0.00 41.50 3.21
3612 4726 5.349270 CACATCACCATTTTTGCTTATGTGG 59.651 40.000 0.00 0.00 39.34 4.17
3613 4727 3.924144 TCACCATTTTTGCTTATGTGGC 58.076 40.909 0.00 0.00 0.00 5.01
3614 4728 3.323115 TCACCATTTTTGCTTATGTGGCA 59.677 39.130 0.00 0.00 37.97 4.92
3615 4729 4.020396 TCACCATTTTTGCTTATGTGGCAT 60.020 37.500 0.00 0.00 39.54 4.40
3616 4730 4.330620 CACCATTTTTGCTTATGTGGCATC 59.669 41.667 0.00 0.00 39.54 3.91
3617 4731 4.223477 ACCATTTTTGCTTATGTGGCATCT 59.777 37.500 0.00 0.00 39.54 2.90
3618 4732 5.421693 ACCATTTTTGCTTATGTGGCATCTA 59.578 36.000 0.00 0.00 39.54 1.98
3619 4733 6.098695 ACCATTTTTGCTTATGTGGCATCTAT 59.901 34.615 0.00 0.00 39.54 1.98
3620 4734 6.422701 CCATTTTTGCTTATGTGGCATCTATG 59.577 38.462 0.00 0.00 39.54 2.23
3621 4735 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
3622 4736 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
3623 4737 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
3624 4738 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
3625 4739 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
3626 4740 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
3627 4741 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
3628 4742 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
3629 4743 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
3630 4744 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
3631 4745 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
3632 4746 6.993079 TGTGGCATCTATGTTACTACCTATG 58.007 40.000 0.00 0.00 0.00 2.23
3633 4747 6.553476 TGTGGCATCTATGTTACTACCTATGT 59.447 38.462 0.00 0.00 0.00 2.29
3634 4748 7.070696 TGTGGCATCTATGTTACTACCTATGTT 59.929 37.037 0.00 0.00 0.00 2.71
3635 4749 8.582437 GTGGCATCTATGTTACTACCTATGTTA 58.418 37.037 0.00 0.00 0.00 2.41
3636 4750 8.582437 TGGCATCTATGTTACTACCTATGTTAC 58.418 37.037 0.00 0.00 0.00 2.50
3637 4751 8.804204 GGCATCTATGTTACTACCTATGTTACT 58.196 37.037 0.00 0.00 0.00 2.24
3638 4752 9.843334 GCATCTATGTTACTACCTATGTTACTC 57.157 37.037 0.00 0.00 0.00 2.59
3640 4754 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
3641 4755 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
3642 4756 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
3643 4757 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
3644 4758 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
3645 4759 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
3646 4760 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
3647 4761 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
3648 4762 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
3649 4763 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
3650 4764 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
3651 4765 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
3652 4766 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
3657 4771 2.366916 CTCCCACTATGACCAGCCTAAG 59.633 54.545 0.00 0.00 0.00 2.18
3658 4772 1.202698 CCCACTATGACCAGCCTAAGC 60.203 57.143 0.00 0.00 40.32 3.09
3727 4841 2.290260 GGGACATCATGAGTGTTGGTCA 60.290 50.000 0.09 0.00 30.87 4.02
3730 4844 3.668447 ACATCATGAGTGTTGGTCAGAC 58.332 45.455 0.09 0.00 30.87 3.51
3733 4847 2.300152 TCATGAGTGTTGGTCAGACTCC 59.700 50.000 0.00 0.00 0.00 3.85
3836 6084 7.457024 GCTTTATAATATAAAGCGGGGGAAA 57.543 36.000 30.20 1.00 46.31 3.13
3837 6085 7.310664 GCTTTATAATATAAAGCGGGGGAAAC 58.689 38.462 30.20 11.52 46.31 2.78
3838 6086 7.176165 GCTTTATAATATAAAGCGGGGGAAACT 59.824 37.037 30.20 0.00 46.31 2.66
3839 6087 8.999905 TTTATAATATAAAGCGGGGGAAACTT 57.000 30.769 1.58 0.00 0.00 2.66
3883 6133 9.555727 TTTCTATTTTCCATATTACTTCCTCCG 57.444 33.333 0.00 0.00 0.00 4.63
3884 6134 8.258850 TCTATTTTCCATATTACTTCCTCCGT 57.741 34.615 0.00 0.00 0.00 4.69
3886 6136 7.803279 ATTTTCCATATTACTTCCTCCGTTC 57.197 36.000 0.00 0.00 0.00 3.95
3888 6138 4.553678 TCCATATTACTTCCTCCGTTCCT 58.446 43.478 0.00 0.00 0.00 3.36
3889 6139 5.708544 TCCATATTACTTCCTCCGTTCCTA 58.291 41.667 0.00 0.00 0.00 2.94
3890 6140 6.138263 TCCATATTACTTCCTCCGTTCCTAA 58.862 40.000 0.00 0.00 0.00 2.69
3891 6141 6.612456 TCCATATTACTTCCTCCGTTCCTAAA 59.388 38.462 0.00 0.00 0.00 1.85
3893 6143 8.591072 CCATATTACTTCCTCCGTTCCTAAATA 58.409 37.037 0.00 0.00 0.00 1.40
3899 6149 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3900 6150 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3901 6151 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
3902 6152 7.949434 TCCTCCGTTCCTAAATATAAGTCTTC 58.051 38.462 0.00 0.00 0.00 2.87
3903 6153 6.862090 CCTCCGTTCCTAAATATAAGTCTTCG 59.138 42.308 0.00 0.00 0.00 3.79
3904 6154 7.338800 TCCGTTCCTAAATATAAGTCTTCGT 57.661 36.000 0.00 0.00 0.00 3.85
3906 6156 8.562892 TCCGTTCCTAAATATAAGTCTTCGTAG 58.437 37.037 0.00 0.00 0.00 3.51
3907 6157 8.562892 CCGTTCCTAAATATAAGTCTTCGTAGA 58.437 37.037 0.00 0.00 0.00 2.59
3908 6158 9.596677 CGTTCCTAAATATAAGTCTTCGTAGAG 57.403 37.037 0.00 0.00 38.43 2.43
3920 6170 7.033530 AGTCTTCGTAGAGATTTCACTATGG 57.966 40.000 0.00 0.00 38.43 2.74
3922 6172 6.913673 GTCTTCGTAGAGATTTCACTATGGAC 59.086 42.308 0.00 2.91 38.43 4.02
3923 6173 6.829298 TCTTCGTAGAGATTTCACTATGGACT 59.171 38.462 4.96 0.00 38.43 3.85
3924 6174 7.991460 TCTTCGTAGAGATTTCACTATGGACTA 59.009 37.037 4.96 0.00 38.43 2.59
3925 6175 7.493743 TCGTAGAGATTTCACTATGGACTAC 57.506 40.000 0.00 0.00 30.34 2.73
3927 6177 7.720074 TCGTAGAGATTTCACTATGGACTACAT 59.280 37.037 0.00 0.00 43.68 2.29
3928 6178 9.000486 CGTAGAGATTTCACTATGGACTACATA 58.000 37.037 0.00 0.00 41.03 2.29
3931 6181 9.593565 AGAGATTTCACTATGGACTACATATGA 57.406 33.333 10.38 0.00 41.07 2.15
3934 6184 8.839310 ATTTCACTATGGACTACATATGAAGC 57.161 34.615 10.38 0.00 41.07 3.86
3935 6185 6.976934 TCACTATGGACTACATATGAAGCA 57.023 37.500 10.38 0.00 41.07 3.91
3936 6186 7.360113 TCACTATGGACTACATATGAAGCAA 57.640 36.000 10.38 0.00 41.07 3.91
3937 6187 7.791029 TCACTATGGACTACATATGAAGCAAA 58.209 34.615 10.38 0.00 41.07 3.68
3938 6188 8.264347 TCACTATGGACTACATATGAAGCAAAA 58.736 33.333 10.38 0.00 41.07 2.44
3939 6189 9.060347 CACTATGGACTACATATGAAGCAAAAT 57.940 33.333 10.38 0.00 41.07 1.82
3940 6190 9.060347 ACTATGGACTACATATGAAGCAAAATG 57.940 33.333 10.38 0.00 41.07 2.32
3941 6191 9.276590 CTATGGACTACATATGAAGCAAAATGA 57.723 33.333 10.38 0.00 41.07 2.57
3942 6192 7.558161 TGGACTACATATGAAGCAAAATGAG 57.442 36.000 10.38 0.00 0.00 2.90
3943 6193 7.112122 TGGACTACATATGAAGCAAAATGAGT 58.888 34.615 10.38 0.00 0.00 3.41
3944 6194 7.066163 TGGACTACATATGAAGCAAAATGAGTG 59.934 37.037 10.38 0.00 0.00 3.51
3946 6196 8.565896 ACTACATATGAAGCAAAATGAGTGAA 57.434 30.769 10.38 0.00 0.00 3.18
3948 6198 9.661187 CTACATATGAAGCAAAATGAGTGAATC 57.339 33.333 10.38 0.00 0.00 2.52
3949 6199 8.289939 ACATATGAAGCAAAATGAGTGAATCT 57.710 30.769 10.38 0.00 0.00 2.40
3950 6200 9.399797 ACATATGAAGCAAAATGAGTGAATCTA 57.600 29.630 10.38 0.00 0.00 1.98
3954 6204 9.624373 ATGAAGCAAAATGAGTGAATCTATACT 57.376 29.630 0.00 0.00 0.00 2.12
3955 6205 9.102757 TGAAGCAAAATGAGTGAATCTATACTC 57.897 33.333 0.00 0.00 42.77 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.329339 GGCGATTGCTTGGCGATC 59.671 61.111 4.59 9.10 43.77 3.69
29 30 1.189403 CGTAGCGAAACTCTAAGGCG 58.811 55.000 0.00 0.00 0.00 5.52
58 59 4.095483 GCAACATAGGAGACAACCATCAAG 59.905 45.833 0.00 0.00 0.00 3.02
60 61 3.008923 TGCAACATAGGAGACAACCATCA 59.991 43.478 0.00 0.00 0.00 3.07
239 242 2.270434 AGTCCCAATAAGCTCCTCCA 57.730 50.000 0.00 0.00 0.00 3.86
480 508 0.896940 AGGTAGAACGAACCGAGGCA 60.897 55.000 0.00 0.00 42.15 4.75
496 524 2.542907 CGCTGCAACAAACCGAGGT 61.543 57.895 0.00 0.00 0.00 3.85
584 612 4.711399 AGTCCCTACCTGTTTGTTTACAC 58.289 43.478 0.00 0.00 0.00 2.90
996 1040 1.750399 GACGGTGATGGCCATTGCT 60.750 57.895 21.84 0.00 37.74 3.91
1278 1356 1.302271 GTTGTTCCTGACCGGGGAC 60.302 63.158 6.32 0.00 35.47 4.46
1382 1468 1.002251 CGATGGAGAAGTAGGTCTCGC 60.002 57.143 0.00 0.00 44.30 5.03
1440 1530 2.825836 GGGTTCTGCGCCATGAGG 60.826 66.667 4.18 0.00 38.23 3.86
1621 1737 2.050350 CATGAAGCAGGGCCTGGTG 61.050 63.158 36.59 21.21 41.59 4.17
1670 1787 2.033448 GCATGGTGGTGAACGGGA 59.967 61.111 0.00 0.00 0.00 5.14
1909 2063 1.068417 TGGTCTTCGTGTTCCGGTG 59.932 57.895 0.00 0.00 37.11 4.94
1914 2068 2.069273 CATGAGGTGGTCTTCGTGTTC 58.931 52.381 0.00 0.00 33.73 3.18
2060 2287 3.733344 TTACCGATGCGCTGCTCCC 62.733 63.158 9.73 0.00 0.00 4.30
2326 2575 2.673523 GTCCAGAGCCACCTGCAT 59.326 61.111 0.00 0.00 44.83 3.96
2352 2620 1.377333 GTGCAGGTAGTTCAGCCCC 60.377 63.158 0.00 0.00 0.00 5.80
2358 3140 2.729882 CGTGTAGTTGTGCAGGTAGTTC 59.270 50.000 0.00 0.00 0.00 3.01
2379 3161 3.755628 TGCACGTAGGGAGCGTCC 61.756 66.667 0.00 0.00 40.90 4.79
2383 3165 0.320421 TTCTTGTGCACGTAGGGAGC 60.320 55.000 13.13 0.00 0.00 4.70
2424 3206 2.733218 CGGAAGCACGCGTTGAGA 60.733 61.111 10.22 0.00 0.00 3.27
2469 3251 1.874019 GTCGACAGTGATCGCGCAT 60.874 57.895 11.55 0.00 41.97 4.73
2470 3252 2.504026 GTCGACAGTGATCGCGCA 60.504 61.111 11.55 0.00 41.97 6.09
2678 3508 0.036671 CACCACCTTCCCGTAGTTCC 60.037 60.000 0.00 0.00 0.00 3.62
2683 3513 3.065306 CAGCACCACCTTCCCGTA 58.935 61.111 0.00 0.00 0.00 4.02
2747 3583 4.681978 GCAGGTCGTCCTTGGCGT 62.682 66.667 0.00 0.00 43.07 5.68
2815 3651 2.978010 GGCCAACACCACGTCCAG 60.978 66.667 0.00 0.00 0.00 3.86
2841 3677 1.659233 CACGCACCTCAATGCCAAA 59.341 52.632 0.00 0.00 42.99 3.28
2975 3822 5.445939 GCGTCACTAATGTGGACTTATTGTG 60.446 44.000 0.00 0.00 43.94 3.33
3005 3852 0.322975 GATGGTGACCTGCTCTGTGT 59.677 55.000 2.11 0.00 0.00 3.72
3006 3853 0.738762 CGATGGTGACCTGCTCTGTG 60.739 60.000 2.11 0.00 0.00 3.66
3022 3869 2.273538 AGTCTATAGGACACGCCGAT 57.726 50.000 0.00 0.00 46.72 4.18
3050 3914 9.941325 TGTTTTATTTTATTGATGATGGTGCTT 57.059 25.926 0.00 0.00 0.00 3.91
3066 3930 7.279758 CACACCAGTGGATGTTTGTTTTATTTT 59.720 33.333 18.40 0.00 42.13 1.82
3126 4002 4.736168 GCAGCATCTCTCGTTTGAGACTAT 60.736 45.833 7.45 0.00 46.25 2.12
3131 4007 1.718396 TGCAGCATCTCTCGTTTGAG 58.282 50.000 0.00 0.00 43.99 3.02
3132 4008 2.168326 TTGCAGCATCTCTCGTTTGA 57.832 45.000 0.00 0.00 0.00 2.69
3133 4009 2.536329 CGATTGCAGCATCTCTCGTTTG 60.536 50.000 0.00 0.00 0.00 2.93
3134 4010 1.662629 CGATTGCAGCATCTCTCGTTT 59.337 47.619 0.00 0.00 0.00 3.60
3135 4011 1.284657 CGATTGCAGCATCTCTCGTT 58.715 50.000 0.00 0.00 0.00 3.85
3136 4012 0.529337 CCGATTGCAGCATCTCTCGT 60.529 55.000 0.00 0.00 0.00 4.18
3137 4013 1.829349 GCCGATTGCAGCATCTCTCG 61.829 60.000 0.00 3.12 40.77 4.04
3138 4014 1.505477 GGCCGATTGCAGCATCTCTC 61.505 60.000 0.00 0.00 43.89 3.20
3139 4015 1.525535 GGCCGATTGCAGCATCTCT 60.526 57.895 0.00 0.00 43.89 3.10
3140 4016 1.170919 ATGGCCGATTGCAGCATCTC 61.171 55.000 0.00 0.00 43.89 2.75
3177 4291 5.851703 GGATTCAGTTTACTCTCGTTTTTGC 59.148 40.000 0.00 0.00 0.00 3.68
3178 4292 6.954944 TGGATTCAGTTTACTCTCGTTTTTG 58.045 36.000 0.00 0.00 0.00 2.44
3179 4293 7.094762 GGATGGATTCAGTTTACTCTCGTTTTT 60.095 37.037 0.00 0.00 0.00 1.94
3180 4294 6.371825 GGATGGATTCAGTTTACTCTCGTTTT 59.628 38.462 0.00 0.00 0.00 2.43
3184 4298 5.011090 TGGATGGATTCAGTTTACTCTCG 57.989 43.478 0.00 0.00 0.00 4.04
3187 4301 5.684704 TGGATGGATGGATTCAGTTTACTC 58.315 41.667 0.00 0.00 0.00 2.59
3190 4304 6.264771 TGATGGATGGATGGATTCAGTTTA 57.735 37.500 0.00 0.00 0.00 2.01
3192 4306 4.801521 TGATGGATGGATGGATTCAGTT 57.198 40.909 0.00 0.00 0.00 3.16
3194 4308 5.221382 GGTTTTGATGGATGGATGGATTCAG 60.221 44.000 0.00 0.00 0.00 3.02
3195 4309 4.650588 GGTTTTGATGGATGGATGGATTCA 59.349 41.667 0.00 0.00 0.00 2.57
3196 4310 4.650588 TGGTTTTGATGGATGGATGGATTC 59.349 41.667 0.00 0.00 0.00 2.52
3197 4311 4.622815 TGGTTTTGATGGATGGATGGATT 58.377 39.130 0.00 0.00 0.00 3.01
3198 4312 4.268828 TGGTTTTGATGGATGGATGGAT 57.731 40.909 0.00 0.00 0.00 3.41
3199 4313 3.754219 TGGTTTTGATGGATGGATGGA 57.246 42.857 0.00 0.00 0.00 3.41
3200 4314 4.822685 TTTGGTTTTGATGGATGGATGG 57.177 40.909 0.00 0.00 0.00 3.51
3223 4337 8.893727 GTCTATACTGAGTTGCACCATATTTTT 58.106 33.333 0.00 0.00 0.00 1.94
3224 4338 7.224753 CGTCTATACTGAGTTGCACCATATTTT 59.775 37.037 0.00 0.00 0.00 1.82
3225 4339 6.701841 CGTCTATACTGAGTTGCACCATATTT 59.298 38.462 0.00 0.00 0.00 1.40
3226 4340 6.183360 ACGTCTATACTGAGTTGCACCATATT 60.183 38.462 0.00 0.00 0.00 1.28
3227 4341 5.302059 ACGTCTATACTGAGTTGCACCATAT 59.698 40.000 0.00 0.00 0.00 1.78
3228 4342 4.643334 ACGTCTATACTGAGTTGCACCATA 59.357 41.667 0.00 0.00 0.00 2.74
3229 4343 3.447586 ACGTCTATACTGAGTTGCACCAT 59.552 43.478 0.00 0.00 0.00 3.55
3230 4344 2.823747 ACGTCTATACTGAGTTGCACCA 59.176 45.455 0.00 0.00 0.00 4.17
3231 4345 3.119602 TCACGTCTATACTGAGTTGCACC 60.120 47.826 0.00 0.00 0.00 5.01
3232 4346 4.092771 TCACGTCTATACTGAGTTGCAC 57.907 45.455 0.00 0.00 0.00 4.57
3233 4347 3.756963 ACTCACGTCTATACTGAGTTGCA 59.243 43.478 0.00 0.00 39.22 4.08
3234 4348 4.358494 ACTCACGTCTATACTGAGTTGC 57.642 45.455 0.00 0.00 39.22 4.17
3235 4349 8.367943 ACTATACTCACGTCTATACTGAGTTG 57.632 38.462 14.13 9.91 40.91 3.16
3237 4351 9.859427 GATACTATACTCACGTCTATACTGAGT 57.141 37.037 13.69 13.69 42.08 3.41
3238 4352 9.012448 CGATACTATACTCACGTCTATACTGAG 57.988 40.741 0.00 0.00 37.13 3.35
3239 4353 7.972832 CCGATACTATACTCACGTCTATACTGA 59.027 40.741 0.00 0.00 0.00 3.41
3240 4354 7.222417 CCCGATACTATACTCACGTCTATACTG 59.778 44.444 0.00 0.00 0.00 2.74
3241 4355 7.264221 CCCGATACTATACTCACGTCTATACT 58.736 42.308 0.00 0.00 0.00 2.12
3242 4356 6.478344 CCCCGATACTATACTCACGTCTATAC 59.522 46.154 0.00 0.00 0.00 1.47
3243 4357 6.381133 TCCCCGATACTATACTCACGTCTATA 59.619 42.308 0.00 0.00 0.00 1.31
3244 4358 5.188555 TCCCCGATACTATACTCACGTCTAT 59.811 44.000 0.00 0.00 0.00 1.98
3245 4359 4.528206 TCCCCGATACTATACTCACGTCTA 59.472 45.833 0.00 0.00 0.00 2.59
3246 4360 3.326006 TCCCCGATACTATACTCACGTCT 59.674 47.826 0.00 0.00 0.00 4.18
3247 4361 3.434984 GTCCCCGATACTATACTCACGTC 59.565 52.174 0.00 0.00 0.00 4.34
3248 4362 3.181451 TGTCCCCGATACTATACTCACGT 60.181 47.826 0.00 0.00 0.00 4.49
3249 4363 3.405831 TGTCCCCGATACTATACTCACG 58.594 50.000 0.00 0.00 0.00 4.35
3250 4364 4.396522 ACTGTCCCCGATACTATACTCAC 58.603 47.826 0.00 0.00 0.00 3.51
3251 4365 4.719026 ACTGTCCCCGATACTATACTCA 57.281 45.455 0.00 0.00 0.00 3.41
3252 4366 6.402456 AAAACTGTCCCCGATACTATACTC 57.598 41.667 0.00 0.00 0.00 2.59
3253 4367 6.381994 TGAAAAACTGTCCCCGATACTATACT 59.618 38.462 0.00 0.00 0.00 2.12
3254 4368 6.576185 TGAAAAACTGTCCCCGATACTATAC 58.424 40.000 0.00 0.00 0.00 1.47
3255 4369 6.795144 TGAAAAACTGTCCCCGATACTATA 57.205 37.500 0.00 0.00 0.00 1.31
3256 4370 5.687166 TGAAAAACTGTCCCCGATACTAT 57.313 39.130 0.00 0.00 0.00 2.12
3257 4371 5.424757 CATGAAAAACTGTCCCCGATACTA 58.575 41.667 0.00 0.00 0.00 1.82
3258 4372 4.261801 CATGAAAAACTGTCCCCGATACT 58.738 43.478 0.00 0.00 0.00 2.12
3259 4373 3.181500 GCATGAAAAACTGTCCCCGATAC 60.181 47.826 0.00 0.00 0.00 2.24
3260 4374 3.013921 GCATGAAAAACTGTCCCCGATA 58.986 45.455 0.00 0.00 0.00 2.92
3261 4375 1.818674 GCATGAAAAACTGTCCCCGAT 59.181 47.619 0.00 0.00 0.00 4.18
3262 4376 1.243902 GCATGAAAAACTGTCCCCGA 58.756 50.000 0.00 0.00 0.00 5.14
3263 4377 0.958091 TGCATGAAAAACTGTCCCCG 59.042 50.000 0.00 0.00 0.00 5.73
3264 4378 2.627699 TCTTGCATGAAAAACTGTCCCC 59.372 45.455 0.00 0.00 0.00 4.81
3265 4379 4.240096 CATCTTGCATGAAAAACTGTCCC 58.760 43.478 6.36 0.00 0.00 4.46
3266 4380 3.676646 GCATCTTGCATGAAAAACTGTCC 59.323 43.478 6.36 0.00 44.26 4.02
3267 4381 4.898328 GCATCTTGCATGAAAAACTGTC 57.102 40.909 6.36 0.00 44.26 3.51
3280 4394 1.445582 GCCAGTTGCAGCATCTTGC 60.446 57.895 12.45 12.45 45.46 4.01
3281 4395 1.154093 CGCCAGTTGCAGCATCTTG 60.154 57.895 2.55 1.87 41.33 3.02
3282 4396 1.601759 ACGCCAGTTGCAGCATCTT 60.602 52.632 2.55 0.00 41.33 2.40
3283 4397 2.033141 ACGCCAGTTGCAGCATCT 59.967 55.556 2.55 0.00 41.33 2.90
3298 4412 6.258160 GTTTTGATGGATGGATTTACTCACG 58.742 40.000 0.00 0.00 0.00 4.35
3334 4448 4.119442 TCTGTTAGGCATTTACTCGGTC 57.881 45.455 0.00 0.00 0.00 4.79
3336 4450 6.929049 TGATATTCTGTTAGGCATTTACTCGG 59.071 38.462 0.00 0.00 0.00 4.63
3337 4451 7.095607 GGTGATATTCTGTTAGGCATTTACTCG 60.096 40.741 0.00 0.00 0.00 4.18
3338 4452 7.173390 GGGTGATATTCTGTTAGGCATTTACTC 59.827 40.741 0.00 0.00 0.00 2.59
3381 4495 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
3382 4496 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
3383 4497 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
3387 4501 6.088541 ACTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
3389 4503 7.223472 ACTACTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
3392 4506 6.660949 TGTTACTACTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
3393 4507 6.793478 TGTTACTACTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
3394 4508 7.894753 ATGTTACTACTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
3395 4509 9.401058 TGTATGTTACTACTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
3431 4545 8.483758 CCCACTATGAAGGTAGTAACATAAACT 58.516 37.037 0.00 0.00 33.29 2.66
3432 4546 8.262933 ACCCACTATGAAGGTAGTAACATAAAC 58.737 37.037 0.00 0.00 33.29 2.01
3433 4547 8.383374 ACCCACTATGAAGGTAGTAACATAAA 57.617 34.615 0.00 0.00 33.29 1.40
3434 4548 7.983166 ACCCACTATGAAGGTAGTAACATAA 57.017 36.000 0.00 0.00 33.29 1.90
3435 4549 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
3444 4558 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
3445 4559 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
3446 4560 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
3447 4561 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
3448 4562 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
3449 4563 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
3451 4565 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
3452 4566 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
3453 4567 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
3454 4568 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
3455 4569 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
3456 4570 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
3457 4571 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
3458 4572 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
3459 4573 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
3460 4574 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
3461 4575 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
3462 4576 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
3463 4577 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
3464 4578 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
3465 4579 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
3466 4580 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
3467 4581 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
3497 4611 9.625747 TCCAATGCATAATGAGTCTACAAAATA 57.374 29.630 0.00 0.00 0.00 1.40
3498 4612 8.523915 TCCAATGCATAATGAGTCTACAAAAT 57.476 30.769 0.00 0.00 0.00 1.82
3499 4613 7.936496 TCCAATGCATAATGAGTCTACAAAA 57.064 32.000 0.00 0.00 0.00 2.44
3500 4614 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
3501 4615 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
3502 4616 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
3503 4617 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
3504 4618 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
3505 4619 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
3506 4620 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
3507 4621 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
3508 4622 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
3509 4623 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
3510 4624 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
3511 4625 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
3512 4626 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
3513 4627 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
3514 4628 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
3515 4629 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
3516 4630 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
3517 4631 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
3518 4632 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
3519 4633 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
3520 4634 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
3521 4635 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
3522 4636 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
3523 4637 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
3524 4638 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
3525 4639 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
3526 4640 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
3527 4641 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
3546 4660 9.343539 GGAAAGAGGCAAATAGAGTAACATAAT 57.656 33.333 0.00 0.00 0.00 1.28
3547 4661 8.548877 AGGAAAGAGGCAAATAGAGTAACATAA 58.451 33.333 0.00 0.00 0.00 1.90
3548 4662 8.090788 AGGAAAGAGGCAAATAGAGTAACATA 57.909 34.615 0.00 0.00 0.00 2.29
3549 4663 6.963322 AGGAAAGAGGCAAATAGAGTAACAT 58.037 36.000 0.00 0.00 0.00 2.71
3550 4664 6.013725 TGAGGAAAGAGGCAAATAGAGTAACA 60.014 38.462 0.00 0.00 0.00 2.41
3551 4665 6.407202 TGAGGAAAGAGGCAAATAGAGTAAC 58.593 40.000 0.00 0.00 0.00 2.50
3552 4666 6.620877 TGAGGAAAGAGGCAAATAGAGTAA 57.379 37.500 0.00 0.00 0.00 2.24
3553 4667 6.814954 ATGAGGAAAGAGGCAAATAGAGTA 57.185 37.500 0.00 0.00 0.00 2.59
3554 4668 5.707066 ATGAGGAAAGAGGCAAATAGAGT 57.293 39.130 0.00 0.00 0.00 3.24
3555 4669 7.772757 AGTTAATGAGGAAAGAGGCAAATAGAG 59.227 37.037 0.00 0.00 0.00 2.43
3556 4670 7.633789 AGTTAATGAGGAAAGAGGCAAATAGA 58.366 34.615 0.00 0.00 0.00 1.98
3557 4671 7.872113 AGTTAATGAGGAAAGAGGCAAATAG 57.128 36.000 0.00 0.00 0.00 1.73
3558 4672 8.548877 AGTAGTTAATGAGGAAAGAGGCAAATA 58.451 33.333 0.00 0.00 0.00 1.40
3559 4673 7.406104 AGTAGTTAATGAGGAAAGAGGCAAAT 58.594 34.615 0.00 0.00 0.00 2.32
3560 4674 6.779860 AGTAGTTAATGAGGAAAGAGGCAAA 58.220 36.000 0.00 0.00 0.00 3.68
3561 4675 6.374417 AGTAGTTAATGAGGAAAGAGGCAA 57.626 37.500 0.00 0.00 0.00 4.52
3562 4676 6.173339 CAAGTAGTTAATGAGGAAAGAGGCA 58.827 40.000 0.00 0.00 0.00 4.75
3563 4677 5.065346 GCAAGTAGTTAATGAGGAAAGAGGC 59.935 44.000 0.00 0.00 0.00 4.70
3564 4678 5.586643 GGCAAGTAGTTAATGAGGAAAGAGG 59.413 44.000 0.00 0.00 0.00 3.69
3565 4679 6.092807 GTGGCAAGTAGTTAATGAGGAAAGAG 59.907 42.308 0.00 0.00 0.00 2.85
3566 4680 5.938125 GTGGCAAGTAGTTAATGAGGAAAGA 59.062 40.000 0.00 0.00 0.00 2.52
3567 4681 5.705441 TGTGGCAAGTAGTTAATGAGGAAAG 59.295 40.000 0.00 0.00 0.00 2.62
3568 4682 5.626142 TGTGGCAAGTAGTTAATGAGGAAA 58.374 37.500 0.00 0.00 0.00 3.13
3569 4683 5.235850 TGTGGCAAGTAGTTAATGAGGAA 57.764 39.130 0.00 0.00 0.00 3.36
3570 4684 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
3571 4685 5.065218 GTGATGTGGCAAGTAGTTAATGAGG 59.935 44.000 0.00 0.00 0.00 3.86
3572 4686 5.065218 GGTGATGTGGCAAGTAGTTAATGAG 59.935 44.000 0.00 0.00 0.00 2.90
3573 4687 4.941263 GGTGATGTGGCAAGTAGTTAATGA 59.059 41.667 0.00 0.00 0.00 2.57
3574 4688 4.699735 TGGTGATGTGGCAAGTAGTTAATG 59.300 41.667 0.00 0.00 0.00 1.90
3575 4689 4.917385 TGGTGATGTGGCAAGTAGTTAAT 58.083 39.130 0.00 0.00 0.00 1.40
3576 4690 4.359434 TGGTGATGTGGCAAGTAGTTAA 57.641 40.909 0.00 0.00 0.00 2.01
3577 4691 4.568072 ATGGTGATGTGGCAAGTAGTTA 57.432 40.909 0.00 0.00 0.00 2.24
3578 4692 2.949177 TGGTGATGTGGCAAGTAGTT 57.051 45.000 0.00 0.00 0.00 2.24
3579 4693 3.439857 AATGGTGATGTGGCAAGTAGT 57.560 42.857 0.00 0.00 0.00 2.73
3580 4694 4.789012 AAAATGGTGATGTGGCAAGTAG 57.211 40.909 0.00 0.00 0.00 2.57
3581 4695 4.798924 GCAAAAATGGTGATGTGGCAAGTA 60.799 41.667 0.00 0.00 0.00 2.24
3582 4696 3.731089 CAAAAATGGTGATGTGGCAAGT 58.269 40.909 0.00 0.00 0.00 3.16
3583 4697 2.481185 GCAAAAATGGTGATGTGGCAAG 59.519 45.455 0.00 0.00 0.00 4.01
3584 4698 2.104451 AGCAAAAATGGTGATGTGGCAA 59.896 40.909 0.00 0.00 0.00 4.52
3585 4699 1.693062 AGCAAAAATGGTGATGTGGCA 59.307 42.857 0.00 0.00 0.00 4.92
3586 4700 2.460757 AGCAAAAATGGTGATGTGGC 57.539 45.000 0.00 0.00 0.00 5.01
3587 4701 5.481105 ACATAAGCAAAAATGGTGATGTGG 58.519 37.500 9.58 0.00 39.24 4.17
3588 4702 6.397831 CACATAAGCAAAAATGGTGATGTG 57.602 37.500 18.78 18.78 46.34 3.21
3589 4703 5.481105 CCACATAAGCAAAAATGGTGATGT 58.519 37.500 5.40 5.40 40.81 3.06
3590 4704 4.330620 GCCACATAAGCAAAAATGGTGATG 59.669 41.667 4.26 4.26 35.01 3.07
3591 4705 4.020396 TGCCACATAAGCAAAAATGGTGAT 60.020 37.500 0.00 0.00 37.28 3.06
3592 4706 3.323115 TGCCACATAAGCAAAAATGGTGA 59.677 39.130 0.00 0.00 37.28 4.02
3593 4707 3.661944 TGCCACATAAGCAAAAATGGTG 58.338 40.909 0.00 0.00 37.28 4.17
3594 4708 4.223477 AGATGCCACATAAGCAAAAATGGT 59.777 37.500 0.00 0.00 44.83 3.55
3595 4709 4.761975 AGATGCCACATAAGCAAAAATGG 58.238 39.130 0.00 0.00 44.83 3.16
3596 4710 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
3597 4711 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
3598 4712 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
3599 4713 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
3600 4714 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
3601 4715 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
3602 4716 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
3603 4717 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
3604 4718 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
3605 4719 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
3606 4720 8.749354 CATAGGTAGTAACATAGATGCCACATA 58.251 37.037 0.00 0.00 0.00 2.29
3607 4721 7.235606 ACATAGGTAGTAACATAGATGCCACAT 59.764 37.037 0.00 0.00 0.00 3.21
3608 4722 6.553476 ACATAGGTAGTAACATAGATGCCACA 59.447 38.462 0.00 0.00 0.00 4.17
3609 4723 6.994221 ACATAGGTAGTAACATAGATGCCAC 58.006 40.000 0.00 0.00 0.00 5.01
3610 4724 7.612065 AACATAGGTAGTAACATAGATGCCA 57.388 36.000 0.00 0.00 0.00 4.92
3611 4725 8.804204 AGTAACATAGGTAGTAACATAGATGCC 58.196 37.037 0.00 0.00 0.00 4.40
3612 4726 9.843334 GAGTAACATAGGTAGTAACATAGATGC 57.157 37.037 0.00 0.00 0.00 3.91
3614 4728 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
3615 4729 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
3616 4730 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
3617 4731 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
3618 4732 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
3619 4733 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
3620 4734 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
3621 4735 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
3622 4736 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
3623 4737 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
3624 4738 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
3625 4739 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
3626 4740 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
3627 4741 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
3628 4742 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
3629 4743 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
3630 4744 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
3631 4745 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
3632 4746 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3633 4747 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
3634 4748 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
3635 4749 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
3636 4750 2.088104 TAGGCTGGTCATAGTGGGAG 57.912 55.000 0.00 0.00 0.00 4.30
3637 4751 2.398588 CTTAGGCTGGTCATAGTGGGA 58.601 52.381 0.00 0.00 0.00 4.37
3638 4752 1.202698 GCTTAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 35.22 4.61
3639 4753 2.246719 GCTTAGGCTGGTCATAGTGG 57.753 55.000 0.00 0.00 35.22 4.00
3651 4765 2.645838 TGGATGGATTCAGCTTAGGC 57.354 50.000 0.00 0.00 39.06 3.93
3652 4766 4.362470 TGATGGATGGATTCAGCTTAGG 57.638 45.455 0.00 0.00 0.00 2.69
3727 4841 3.957497 GGTGACTACATCATGAGGAGTCT 59.043 47.826 25.27 6.35 40.28 3.24
3730 4844 2.035193 CCGGTGACTACATCATGAGGAG 59.965 54.545 15.42 8.49 40.28 3.69
3733 4847 1.539065 GGCCGGTGACTACATCATGAG 60.539 57.143 1.90 0.00 40.28 2.90
3875 6125 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
3878 6128 6.862090 CGAAGACTTATATTTAGGAACGGAGG 59.138 42.308 0.00 0.00 0.00 4.30
3881 6131 8.562892 TCTACGAAGACTTATATTTAGGAACGG 58.437 37.037 0.00 0.00 0.00 4.44
3882 6132 9.596677 CTCTACGAAGACTTATATTTAGGAACG 57.403 37.037 0.00 0.00 0.00 3.95
3894 6144 8.622157 CCATAGTGAAATCTCTACGAAGACTTA 58.378 37.037 0.00 0.00 0.00 2.24
3895 6145 7.339721 TCCATAGTGAAATCTCTACGAAGACTT 59.660 37.037 0.00 0.00 0.00 3.01
3896 6146 6.829298 TCCATAGTGAAATCTCTACGAAGACT 59.171 38.462 0.00 0.00 0.00 3.24
3897 6147 6.913673 GTCCATAGTGAAATCTCTACGAAGAC 59.086 42.308 0.00 0.00 0.00 3.01
3899 6149 7.033530 AGTCCATAGTGAAATCTCTACGAAG 57.966 40.000 0.00 0.00 0.00 3.79
3900 6150 7.555195 TGTAGTCCATAGTGAAATCTCTACGAA 59.445 37.037 0.00 0.00 0.00 3.85
3901 6151 7.052248 TGTAGTCCATAGTGAAATCTCTACGA 58.948 38.462 0.00 0.00 0.00 3.43
3902 6152 7.260558 TGTAGTCCATAGTGAAATCTCTACG 57.739 40.000 0.00 0.00 0.00 3.51
3908 6158 8.930760 GCTTCATATGTAGTCCATAGTGAAATC 58.069 37.037 10.61 0.00 39.36 2.17
3910 6160 7.791029 TGCTTCATATGTAGTCCATAGTGAAA 58.209 34.615 10.61 0.00 39.36 2.69
3911 6161 7.360113 TGCTTCATATGTAGTCCATAGTGAA 57.640 36.000 10.61 0.00 39.36 3.18
3912 6162 6.976934 TGCTTCATATGTAGTCCATAGTGA 57.023 37.500 10.61 0.00 39.36 3.41
3913 6163 8.437360 TTTTGCTTCATATGTAGTCCATAGTG 57.563 34.615 10.61 0.00 39.36 2.74
3914 6164 9.060347 CATTTTGCTTCATATGTAGTCCATAGT 57.940 33.333 10.61 0.00 39.36 2.12
3915 6165 9.276590 TCATTTTGCTTCATATGTAGTCCATAG 57.723 33.333 10.61 0.00 39.36 2.23
3916 6166 9.276590 CTCATTTTGCTTCATATGTAGTCCATA 57.723 33.333 10.61 0.00 40.27 2.74
3917 6167 7.776969 ACTCATTTTGCTTCATATGTAGTCCAT 59.223 33.333 10.61 0.00 37.58 3.41
3919 6169 7.280876 TCACTCATTTTGCTTCATATGTAGTCC 59.719 37.037 10.61 0.00 0.00 3.85
3920 6170 8.201554 TCACTCATTTTGCTTCATATGTAGTC 57.798 34.615 10.61 4.54 0.00 2.59
3922 6172 9.661187 GATTCACTCATTTTGCTTCATATGTAG 57.339 33.333 5.04 5.04 0.00 2.74
3923 6173 9.399797 AGATTCACTCATTTTGCTTCATATGTA 57.600 29.630 1.90 0.00 0.00 2.29
3924 6174 8.289939 AGATTCACTCATTTTGCTTCATATGT 57.710 30.769 1.90 0.00 0.00 2.29
3928 6178 9.624373 AGTATAGATTCACTCATTTTGCTTCAT 57.376 29.630 0.00 0.00 0.00 2.57
3930 6180 9.323985 AGAGTATAGATTCACTCATTTTGCTTC 57.676 33.333 4.70 0.00 42.99 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.