Multiple sequence alignment - TraesCS4A01G427800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G427800 chr4A 100.000 2297 0 0 1 2297 698565598 698563302 0.000000e+00 4242.0
1 TraesCS4A01G427800 chr4A 80.797 276 46 5 182 455 2009643 2009913 2.310000e-50 209.0
2 TraesCS4A01G427800 chr4A 84.444 90 10 3 558 646 741062016 741062102 4.070000e-13 86.1
3 TraesCS4A01G427800 chr4A 84.444 90 10 3 558 646 741069403 741069489 4.070000e-13 86.1
4 TraesCS4A01G427800 chr4A 84.444 90 10 3 558 646 741076048 741076134 4.070000e-13 86.1
5 TraesCS4A01G427800 chr2D 94.128 1107 44 10 690 1793 644702218 644703306 0.000000e+00 1664.0
6 TraesCS4A01G427800 chr2D 93.682 1108 49 10 689 1793 635068664 635067575 0.000000e+00 1639.0
7 TraesCS4A01G427800 chrUn 93.863 1108 47 10 689 1793 45099745 45100834 0.000000e+00 1650.0
8 TraesCS4A01G427800 chrUn 93.863 1108 47 10 689 1793 261514111 261513022 0.000000e+00 1650.0
9 TraesCS4A01G427800 chrUn 93.321 1108 48 11 689 1793 186162737 186163821 0.000000e+00 1613.0
10 TraesCS4A01G427800 chrUn 92.435 542 23 6 1253 1793 365031619 365031095 0.000000e+00 758.0
11 TraesCS4A01G427800 chrUn 94.737 399 20 1 1785 2182 186163727 186164125 9.010000e-174 619.0
12 TraesCS4A01G427800 chrUn 85.542 83 9 2 565 646 289105304 289105384 1.460000e-12 84.2
13 TraesCS4A01G427800 chrUn 85.542 83 9 2 565 646 301912892 301912972 1.460000e-12 84.2
14 TraesCS4A01G427800 chr5B 93.863 1108 47 10 689 1793 130613854 130614943 0.000000e+00 1650.0
15 TraesCS4A01G427800 chr5B 93.682 1108 49 10 689 1793 130608830 130609919 0.000000e+00 1639.0
16 TraesCS4A01G427800 chr5B 93.575 965 41 9 832 1793 130536375 130537321 0.000000e+00 1419.0
17 TraesCS4A01G427800 chr7D 93.773 1108 48 9 689 1793 626649218 626650307 0.000000e+00 1644.0
18 TraesCS4A01G427800 chr2B 93.773 1108 48 10 689 1793 112868066 112869155 0.000000e+00 1644.0
19 TraesCS4A01G427800 chr3A 93.682 1108 49 9 689 1793 66031360 66030271 0.000000e+00 1639.0
20 TraesCS4A01G427800 chr3A 94.912 511 25 1 1788 2297 725775926 725775416 0.000000e+00 798.0
21 TraesCS4A01G427800 chr3A 91.749 303 23 1 155 455 710884052 710884354 9.810000e-114 420.0
22 TraesCS4A01G427800 chr3A 92.340 235 18 0 456 690 710884390 710884624 3.660000e-88 335.0
23 TraesCS4A01G427800 chr3A 81.061 264 44 4 186 447 713674518 713674259 2.990000e-49 206.0
24 TraesCS4A01G427800 chr3A 88.050 159 19 0 186 344 738299597 738299755 3.010000e-44 189.0
25 TraesCS4A01G427800 chr3A 87.821 156 19 0 1 156 710883839 710883994 1.400000e-42 183.0
26 TraesCS4A01G427800 chr3A 81.818 110 18 1 566 675 713674009 713673902 8.740000e-15 91.6
27 TraesCS4A01G427800 chr5A 93.592 1108 50 10 689 1793 238860408 238861497 0.000000e+00 1633.0
28 TraesCS4A01G427800 chr5A 95.136 514 24 1 1785 2297 238828079 238827566 0.000000e+00 809.0
29 TraesCS4A01G427800 chr5A 94.942 514 25 1 1785 2297 238861403 238861916 0.000000e+00 804.0
30 TraesCS4A01G427800 chr5A 96.847 222 7 0 2076 2297 420186902 420187123 2.790000e-99 372.0
31 TraesCS4A01G427800 chr5A 92.208 77 6 0 459 535 662371957 662371881 2.410000e-20 110.0
32 TraesCS4A01G427800 chr5A 92.105 76 6 0 459 534 438247253 438247178 8.680000e-20 108.0
33 TraesCS4A01G427800 chr5A 81.818 110 16 2 568 675 662371748 662371641 3.140000e-14 89.8
34 TraesCS4A01G427800 chr5A 80.000 105 19 1 571 675 438247041 438246939 2.450000e-10 76.8
35 TraesCS4A01G427800 chr3D 93.592 1108 50 9 689 1793 602890848 602889759 0.000000e+00 1633.0
36 TraesCS4A01G427800 chr1B 93.836 941 38 9 689 1627 583497510 583498432 0.000000e+00 1399.0
37 TraesCS4A01G427800 chr1B 81.481 270 46 3 186 454 680936710 680936444 3.840000e-53 219.0
38 TraesCS4A01G427800 chr6A 95.136 514 24 1 1785 2297 155846730 155847243 0.000000e+00 809.0
39 TraesCS4A01G427800 chr6A 94.152 513 26 4 1785 2296 375869305 375868796 0.000000e+00 778.0
40 TraesCS4A01G427800 chr6A 95.455 44 2 0 492 535 4540884 4540841 1.140000e-08 71.3
41 TraesCS4A01G427800 chr1A 94.747 514 26 1 1785 2297 334092806 334093319 0.000000e+00 798.0
42 TraesCS4A01G427800 chr2A 94.163 514 29 1 1785 2297 303290999 303290486 0.000000e+00 782.0
43 TraesCS4A01G427800 chr6B 93.774 514 31 1 1785 2297 388038801 388038288 0.000000e+00 771.0
44 TraesCS4A01G427800 chr1D 81.527 406 52 17 186 572 8061792 8061391 1.710000e-81 313.0
45 TraesCS4A01G427800 chr7B 87.660 235 29 0 456 690 703845445 703845679 8.080000e-70 274.0
46 TraesCS4A01G427800 chr7B 87.137 241 31 0 456 696 748863147 748862907 8.080000e-70 274.0
47 TraesCS4A01G427800 chr7B 81.159 276 45 5 182 455 608282488 608282218 4.970000e-52 215.0
48 TraesCS4A01G427800 chr5D 82.206 281 44 4 177 455 499509823 499509547 1.060000e-58 237.0
49 TraesCS4A01G427800 chr5D 82.857 105 16 1 571 675 499509296 499509194 2.430000e-15 93.5
50 TraesCS4A01G427800 chr4B 82.288 271 42 4 186 454 662091722 662091456 1.770000e-56 230.0
51 TraesCS4A01G427800 chr3B 81.673 251 40 4 208 455 829362165 829361918 1.080000e-48 204.0
52 TraesCS4A01G427800 chr7A 82.524 103 16 1 573 675 14789919 14790019 3.140000e-14 89.8
53 TraesCS4A01G427800 chr7A 81.905 105 17 1 571 675 209701041 209700939 1.130000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G427800 chr4A 698563302 698565598 2296 True 4242.000000 4242 100.000000 1 2297 1 chr4A.!!$R1 2296
1 TraesCS4A01G427800 chr2D 644702218 644703306 1088 False 1664.000000 1664 94.128000 690 1793 1 chr2D.!!$F1 1103
2 TraesCS4A01G427800 chr2D 635067575 635068664 1089 True 1639.000000 1639 93.682000 689 1793 1 chr2D.!!$R1 1104
3 TraesCS4A01G427800 chrUn 45099745 45100834 1089 False 1650.000000 1650 93.863000 689 1793 1 chrUn.!!$F1 1104
4 TraesCS4A01G427800 chrUn 261513022 261514111 1089 True 1650.000000 1650 93.863000 689 1793 1 chrUn.!!$R1 1104
5 TraesCS4A01G427800 chrUn 186162737 186164125 1388 False 1116.000000 1613 94.029000 689 2182 2 chrUn.!!$F4 1493
6 TraesCS4A01G427800 chrUn 365031095 365031619 524 True 758.000000 758 92.435000 1253 1793 1 chrUn.!!$R2 540
7 TraesCS4A01G427800 chr5B 130608830 130614943 6113 False 1644.500000 1650 93.772500 689 1793 2 chr5B.!!$F2 1104
8 TraesCS4A01G427800 chr5B 130536375 130537321 946 False 1419.000000 1419 93.575000 832 1793 1 chr5B.!!$F1 961
9 TraesCS4A01G427800 chr7D 626649218 626650307 1089 False 1644.000000 1644 93.773000 689 1793 1 chr7D.!!$F1 1104
10 TraesCS4A01G427800 chr2B 112868066 112869155 1089 False 1644.000000 1644 93.773000 689 1793 1 chr2B.!!$F1 1104
11 TraesCS4A01G427800 chr3A 66030271 66031360 1089 True 1639.000000 1639 93.682000 689 1793 1 chr3A.!!$R1 1104
12 TraesCS4A01G427800 chr3A 725775416 725775926 510 True 798.000000 798 94.912000 1788 2297 1 chr3A.!!$R2 509
13 TraesCS4A01G427800 chr3A 710883839 710884624 785 False 312.666667 420 90.636667 1 690 3 chr3A.!!$F2 689
14 TraesCS4A01G427800 chr5A 238860408 238861916 1508 False 1218.500000 1633 94.267000 689 2297 2 chr5A.!!$F2 1608
15 TraesCS4A01G427800 chr5A 238827566 238828079 513 True 809.000000 809 95.136000 1785 2297 1 chr5A.!!$R1 512
16 TraesCS4A01G427800 chr3D 602889759 602890848 1089 True 1633.000000 1633 93.592000 689 1793 1 chr3D.!!$R1 1104
17 TraesCS4A01G427800 chr1B 583497510 583498432 922 False 1399.000000 1399 93.836000 689 1627 1 chr1B.!!$F1 938
18 TraesCS4A01G427800 chr6A 155846730 155847243 513 False 809.000000 809 95.136000 1785 2297 1 chr6A.!!$F1 512
19 TraesCS4A01G427800 chr6A 375868796 375869305 509 True 778.000000 778 94.152000 1785 2296 1 chr6A.!!$R2 511
20 TraesCS4A01G427800 chr1A 334092806 334093319 513 False 798.000000 798 94.747000 1785 2297 1 chr1A.!!$F1 512
21 TraesCS4A01G427800 chr2A 303290486 303290999 513 True 782.000000 782 94.163000 1785 2297 1 chr2A.!!$R1 512
22 TraesCS4A01G427800 chr6B 388038288 388038801 513 True 771.000000 771 93.774000 1785 2297 1 chr6B.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 584 0.179108 GTCCTTCTTCGTGGCGCTAT 60.179 55.0 7.64 0.0 0.0 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 7051 0.241481 GATAGATCCGGTCGAGGTGC 59.759 60.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.971125 GAGCCAGATACCGCCGGC 62.971 72.222 19.07 19.07 45.23 6.13
59 60 1.901948 CAGATACCGCCGGCCTCTA 60.902 63.158 23.46 7.92 0.00 2.43
60 61 1.902432 AGATACCGCCGGCCTCTAC 60.902 63.158 23.46 10.19 0.00 2.59
80 81 2.501223 GATGTCGTTGCCGAGGTGGA 62.501 60.000 0.00 0.00 45.26 4.02
86 87 2.448582 TTGCCGAGGTGGAGTTGGT 61.449 57.895 0.00 0.00 42.00 3.67
89 90 1.542187 GCCGAGGTGGAGTTGGTACT 61.542 60.000 0.00 0.00 42.00 2.73
98 99 4.020485 GGTGGAGTTGGTACTGTGATACTT 60.020 45.833 0.00 0.00 33.84 2.24
106 107 0.673644 ACTGTGATACTTGCCGGCAC 60.674 55.000 32.95 18.61 0.00 5.01
111 112 2.252072 GATACTTGCCGGCACCCTCA 62.252 60.000 32.95 14.05 0.00 3.86
114 115 4.776322 TTGCCGGCACCCTCATCG 62.776 66.667 32.95 0.00 0.00 3.84
122 123 2.438975 ACCCTCATCGCCGTCGTA 60.439 61.111 0.00 0.00 36.96 3.43
144 145 1.614241 GGTGTAGATGGTGTCGGGCT 61.614 60.000 0.00 0.00 0.00 5.19
145 146 1.108776 GTGTAGATGGTGTCGGGCTA 58.891 55.000 0.00 0.00 0.00 3.93
152 171 0.613572 TGGTGTCGGGCTAGATGTCA 60.614 55.000 0.00 0.00 0.00 3.58
198 258 3.492102 AGAGCTAGCTTGGTGAAAACA 57.508 42.857 20.42 0.00 0.00 2.83
206 266 0.395862 TTGGTGAAAACAAGCCCCGA 60.396 50.000 0.00 0.00 0.00 5.14
293 353 2.031163 GCCTTGGTGACGTCAGCT 59.969 61.111 38.31 0.00 44.12 4.24
296 356 0.951040 CCTTGGTGACGTCAGCTTCC 60.951 60.000 38.31 26.99 44.12 3.46
324 384 1.291132 GGCTTGGTGAATACGAGCTC 58.709 55.000 2.73 2.73 37.05 4.09
366 426 4.838152 CGGTGATGAGTGGGGGCG 62.838 72.222 0.00 0.00 0.00 6.13
449 511 1.135939 CGTGCTCCGTGTCATCGTA 59.864 57.895 0.00 0.00 0.00 3.43
477 574 0.452585 CGACCTCCTCGTCCTTCTTC 59.547 60.000 0.00 0.00 37.64 2.87
486 583 1.214589 GTCCTTCTTCGTGGCGCTA 59.785 57.895 7.64 0.00 0.00 4.26
487 584 0.179108 GTCCTTCTTCGTGGCGCTAT 60.179 55.000 7.64 0.00 0.00 2.97
490 587 1.337071 CCTTCTTCGTGGCGCTATCTA 59.663 52.381 7.64 0.00 0.00 1.98
499 596 2.297597 GTGGCGCTATCTAGGTGAAGAT 59.702 50.000 7.64 0.00 39.54 2.40
510 607 0.465705 GGTGAAGATCATCTCCGGCA 59.534 55.000 0.00 0.00 0.00 5.69
535 632 0.815734 GACTTCATCTTCCGGTCCGA 59.184 55.000 14.39 0.00 0.00 4.55
536 633 1.203994 GACTTCATCTTCCGGTCCGAA 59.796 52.381 14.39 4.43 0.00 4.30
551 648 2.191513 CGAAGGCGGTCCGATCCTA 61.192 63.158 17.49 0.00 37.47 2.94
553 650 1.380785 AAGGCGGTCCGATCCTACA 60.381 57.895 17.49 0.00 37.47 2.74
569 666 3.070446 TCCTACAAACTTTGCTCTTCGGA 59.930 43.478 1.14 0.00 0.00 4.55
583 680 2.032071 CGGAAAGGTGGGCTTCGT 59.968 61.111 0.00 0.00 0.00 3.85
584 681 1.186917 TCGGAAAGGTGGGCTTCGTA 61.187 55.000 0.00 0.00 0.00 3.43
768 865 1.933021 ACCACTTAGTGATCGGTCCA 58.067 50.000 14.66 0.00 35.23 4.02
784 881 2.812011 GGTCCACTAGTTCACGCAAATT 59.188 45.455 0.00 0.00 0.00 1.82
799 896 6.092122 TCACGCAAATTCGAAGAAGTTATCAT 59.908 34.615 3.35 0.00 45.90 2.45
818 915 2.359169 GGACGAGCCACATGGAGGA 61.359 63.158 10.35 0.00 37.39 3.71
825 922 2.893489 GAGCCACATGGAGGAAAACTTT 59.107 45.455 10.35 0.00 37.39 2.66
827 924 2.893489 GCCACATGGAGGAAAACTTTCT 59.107 45.455 10.35 0.00 35.90 2.52
839 936 4.260661 GGAAAACTTTCTCGTGTGGTTCTC 60.261 45.833 2.41 0.00 37.35 2.87
850 947 2.671963 GGTTCTCGCCGGGCTTTT 60.672 61.111 18.34 0.00 0.00 2.27
863 960 3.381949 CGGGCTTTTCTTCGGTATCTAG 58.618 50.000 0.00 0.00 0.00 2.43
908 1006 2.803492 GCGCACCTCTCCTAACTATTGG 60.803 54.545 0.30 0.00 0.00 3.16
921 1019 7.811282 TCCTAACTATTGGCCATTTATTCTGA 58.189 34.615 6.09 0.00 0.00 3.27
959 1058 9.547279 AGGAGGGACAATTTTTACATATTTCTT 57.453 29.630 0.00 0.00 0.00 2.52
1008 1107 4.722194 CTGGTACCATTTCGATGTGTTTG 58.278 43.478 16.75 0.00 0.00 2.93
1011 1110 3.915437 ACCATTTCGATGTGTTTGGAC 57.085 42.857 0.00 0.00 0.00 4.02
1099 1198 7.600960 CAGTATGCTCTTAATGATCTCAGCTA 58.399 38.462 0.00 0.00 0.00 3.32
1342 6467 6.357367 AGTTGTAATTCTAGGGCAATCGATT 58.643 36.000 4.39 4.39 0.00 3.34
1347 6472 4.487714 TTCTAGGGCAATCGATTCACTT 57.512 40.909 7.92 3.18 0.00 3.16
1348 6473 4.487714 TCTAGGGCAATCGATTCACTTT 57.512 40.909 7.92 0.00 0.00 2.66
1349 6474 4.442706 TCTAGGGCAATCGATTCACTTTC 58.557 43.478 7.92 0.00 0.00 2.62
1350 6475 2.369394 AGGGCAATCGATTCACTTTCC 58.631 47.619 7.92 4.07 0.00 3.13
1351 6476 1.064060 GGGCAATCGATTCACTTTCCG 59.936 52.381 7.92 0.00 0.00 4.30
1352 6477 1.737793 GGCAATCGATTCACTTTCCGT 59.262 47.619 7.92 0.00 0.00 4.69
1353 6478 2.933906 GGCAATCGATTCACTTTCCGTA 59.066 45.455 7.92 0.00 0.00 4.02
1354 6479 3.372822 GGCAATCGATTCACTTTCCGTAA 59.627 43.478 7.92 0.00 0.00 3.18
1355 6480 4.142773 GGCAATCGATTCACTTTCCGTAAA 60.143 41.667 7.92 0.00 0.00 2.01
1356 6481 5.387279 GCAATCGATTCACTTTCCGTAAAA 58.613 37.500 7.92 0.00 0.00 1.52
1357 6482 6.027749 GCAATCGATTCACTTTCCGTAAAAT 58.972 36.000 7.92 0.00 0.00 1.82
1358 6483 6.194692 GCAATCGATTCACTTTCCGTAAAATC 59.805 38.462 7.92 0.00 0.00 2.17
1359 6484 7.464358 CAATCGATTCACTTTCCGTAAAATCT 58.536 34.615 7.92 0.00 30.51 2.40
1360 6485 6.642683 TCGATTCACTTTCCGTAAAATCTC 57.357 37.500 0.00 0.00 30.51 2.75
1361 6486 6.395629 TCGATTCACTTTCCGTAAAATCTCT 58.604 36.000 0.00 0.00 30.51 3.10
1362 6487 6.530534 TCGATTCACTTTCCGTAAAATCTCTC 59.469 38.462 0.00 0.00 30.51 3.20
1395 6520 2.223688 CCTAAGGCTGTGTCTCGATCTG 60.224 54.545 0.00 0.00 0.00 2.90
1399 6524 1.339610 GGCTGTGTCTCGATCTGCTAT 59.660 52.381 0.00 0.00 0.00 2.97
1402 6527 1.067669 TGTGTCTCGATCTGCTATGCC 59.932 52.381 0.00 0.00 0.00 4.40
1444 6569 1.064825 GGGGTCCTATGGTATGGGTG 58.935 60.000 0.00 0.00 31.94 4.61
1487 6612 2.125350 CGGAGAGTCAGCTTGGCC 60.125 66.667 0.00 0.00 0.00 5.36
1498 6623 1.815003 CAGCTTGGCCTAAAGTGAAGG 59.185 52.381 3.32 0.00 37.17 3.46
1503 6628 1.777878 TGGCCTAAAGTGAAGGTTGGA 59.222 47.619 3.32 0.00 36.43 3.53
1507 6632 2.290960 CCTAAAGTGAAGGTTGGAGGGG 60.291 54.545 0.00 0.00 0.00 4.79
1526 6651 1.891150 GGATAGAGCGAAATCCCCGTA 59.109 52.381 3.60 0.00 36.44 4.02
1527 6652 2.352519 GGATAGAGCGAAATCCCCGTAC 60.353 54.545 3.60 0.00 36.44 3.67
1589 6714 4.510571 GCCCGATACTTCAACTAAAGGAA 58.489 43.478 0.00 0.00 0.00 3.36
1592 6717 4.565564 CCGATACTTCAACTAAAGGAACGG 59.434 45.833 3.60 3.60 45.41 4.44
1667 6792 1.198759 ATCCAGTGCCCAACTACCGT 61.199 55.000 0.00 0.00 36.83 4.83
1676 6801 0.324460 CCAACTACCGTCTCCTCCCT 60.324 60.000 0.00 0.00 0.00 4.20
1698 6823 1.299541 ATTGCGTTATTGGAGCCGAG 58.700 50.000 0.00 0.00 0.00 4.63
1699 6824 1.366111 TTGCGTTATTGGAGCCGAGC 61.366 55.000 0.00 0.00 0.00 5.03
1700 6825 2.534903 GCGTTATTGGAGCCGAGCC 61.535 63.158 0.00 0.00 0.00 4.70
1701 6826 1.153449 CGTTATTGGAGCCGAGCCA 60.153 57.895 0.00 0.00 0.00 4.75
1702 6827 1.154205 CGTTATTGGAGCCGAGCCAG 61.154 60.000 0.00 0.00 36.64 4.85
1703 6828 0.815615 GTTATTGGAGCCGAGCCAGG 60.816 60.000 0.00 0.00 36.64 4.45
1704 6829 0.980754 TTATTGGAGCCGAGCCAGGA 60.981 55.000 0.00 0.00 36.64 3.86
1705 6830 0.980754 TATTGGAGCCGAGCCAGGAA 60.981 55.000 0.00 0.00 36.64 3.36
1706 6831 1.639635 ATTGGAGCCGAGCCAGGAAT 61.640 55.000 0.00 0.00 36.64 3.01
1707 6832 0.980754 TTGGAGCCGAGCCAGGAATA 60.981 55.000 0.00 0.00 36.64 1.75
1708 6833 1.369321 GGAGCCGAGCCAGGAATAG 59.631 63.158 0.00 0.00 0.00 1.73
1709 6834 1.301322 GAGCCGAGCCAGGAATAGC 60.301 63.158 0.00 0.00 0.00 2.97
1710 6835 1.753368 GAGCCGAGCCAGGAATAGCT 61.753 60.000 0.00 0.00 0.00 3.32
1711 6836 1.596477 GCCGAGCCAGGAATAGCTG 60.596 63.158 0.00 0.00 0.00 4.24
1712 6837 1.826024 CCGAGCCAGGAATAGCTGT 59.174 57.895 0.00 0.00 0.00 4.40
1713 6838 0.179000 CCGAGCCAGGAATAGCTGTT 59.821 55.000 0.00 0.00 0.00 3.16
1714 6839 1.412710 CCGAGCCAGGAATAGCTGTTA 59.587 52.381 0.00 0.00 0.00 2.41
1715 6840 2.546795 CCGAGCCAGGAATAGCTGTTAG 60.547 54.545 0.00 0.00 0.00 2.34
1716 6841 2.101582 CGAGCCAGGAATAGCTGTTAGT 59.898 50.000 0.00 0.00 0.00 2.24
1717 6842 3.462021 GAGCCAGGAATAGCTGTTAGTG 58.538 50.000 0.00 0.00 0.00 2.74
1718 6843 2.171448 AGCCAGGAATAGCTGTTAGTGG 59.829 50.000 15.40 15.40 0.00 4.00
1719 6844 2.170607 GCCAGGAATAGCTGTTAGTGGA 59.829 50.000 21.14 0.00 0.00 4.02
1720 6845 3.798202 CCAGGAATAGCTGTTAGTGGAC 58.202 50.000 14.85 0.00 0.00 4.02
1721 6846 3.197766 CCAGGAATAGCTGTTAGTGGACA 59.802 47.826 14.85 0.00 0.00 4.02
1722 6847 4.184629 CAGGAATAGCTGTTAGTGGACAC 58.815 47.826 0.00 0.00 0.00 3.67
1723 6848 3.197983 AGGAATAGCTGTTAGTGGACACC 59.802 47.826 0.00 0.00 0.00 4.16
1724 6849 3.197983 GGAATAGCTGTTAGTGGACACCT 59.802 47.826 0.00 0.00 0.00 4.00
1725 6850 4.404715 GGAATAGCTGTTAGTGGACACCTA 59.595 45.833 0.00 0.00 0.00 3.08
1726 6851 5.340439 AATAGCTGTTAGTGGACACCTAC 57.660 43.478 0.00 0.00 0.00 3.18
1727 6852 1.900486 AGCTGTTAGTGGACACCTACC 59.100 52.381 0.00 0.00 0.00 3.18
1728 6853 1.621814 GCTGTTAGTGGACACCTACCA 59.378 52.381 0.00 0.00 34.84 3.25
1736 6861 3.202829 TGGACACCTACCACTTTTCAC 57.797 47.619 0.00 0.00 32.03 3.18
1737 6862 2.158726 TGGACACCTACCACTTTTCACC 60.159 50.000 0.00 0.00 32.03 4.02
1738 6863 2.158726 GGACACCTACCACTTTTCACCA 60.159 50.000 0.00 0.00 0.00 4.17
1739 6864 3.139077 GACACCTACCACTTTTCACCAG 58.861 50.000 0.00 0.00 0.00 4.00
1740 6865 2.508300 ACACCTACCACTTTTCACCAGT 59.492 45.455 0.00 0.00 0.00 4.00
1741 6866 3.712733 ACACCTACCACTTTTCACCAGTA 59.287 43.478 0.00 0.00 0.00 2.74
1742 6867 4.164604 ACACCTACCACTTTTCACCAGTAA 59.835 41.667 0.00 0.00 0.00 2.24
1743 6868 4.755123 CACCTACCACTTTTCACCAGTAAG 59.245 45.833 0.00 0.00 0.00 2.34
1744 6869 4.657039 ACCTACCACTTTTCACCAGTAAGA 59.343 41.667 0.00 0.00 0.00 2.10
1745 6870 5.221661 ACCTACCACTTTTCACCAGTAAGAG 60.222 44.000 0.00 0.00 0.00 2.85
1746 6871 5.011738 CCTACCACTTTTCACCAGTAAGAGA 59.988 44.000 0.00 0.00 0.00 3.10
1747 6872 4.962155 ACCACTTTTCACCAGTAAGAGAG 58.038 43.478 0.00 0.00 0.00 3.20
1748 6873 3.748568 CCACTTTTCACCAGTAAGAGAGC 59.251 47.826 0.00 0.00 0.00 4.09
1749 6874 3.748568 CACTTTTCACCAGTAAGAGAGCC 59.251 47.826 0.00 0.00 0.00 4.70
1750 6875 3.244596 ACTTTTCACCAGTAAGAGAGCCC 60.245 47.826 0.00 0.00 0.00 5.19
1751 6876 1.276622 TTCACCAGTAAGAGAGCCCC 58.723 55.000 0.00 0.00 0.00 5.80
1752 6877 0.413832 TCACCAGTAAGAGAGCCCCT 59.586 55.000 0.00 0.00 0.00 4.79
1753 6878 0.827368 CACCAGTAAGAGAGCCCCTC 59.173 60.000 0.00 0.00 42.28 4.30
1767 6892 7.971183 GAGAGCCCCTCTTTAATACATTAAG 57.029 40.000 0.00 0.00 41.35 1.85
1768 6893 7.691993 AGAGCCCCTCTTTAATACATTAAGA 57.308 36.000 0.00 0.00 37.60 2.10
1769 6894 8.102484 AGAGCCCCTCTTTAATACATTAAGAA 57.898 34.615 0.00 0.00 37.60 2.52
1770 6895 8.557450 AGAGCCCCTCTTTAATACATTAAGAAA 58.443 33.333 0.00 0.00 37.60 2.52
1771 6896 9.185680 GAGCCCCTCTTTAATACATTAAGAAAA 57.814 33.333 0.00 0.00 34.13 2.29
1772 6897 9.715119 AGCCCCTCTTTAATACATTAAGAAAAT 57.285 29.630 0.00 0.00 34.13 1.82
1792 6917 0.482446 ATGTTCACAGGGCCAGGAAA 59.518 50.000 6.18 0.00 0.00 3.13
1796 6921 1.228675 CACAGGGCCAGGAAAAGCT 60.229 57.895 6.18 0.00 0.00 3.74
1834 6959 3.748568 CCACTTTTCACCAGTTAGAGAGC 59.251 47.826 0.00 0.00 0.00 4.09
1898 7024 5.579564 AAGACTCGGTCATAGGAACTTAC 57.420 43.478 6.78 0.00 35.69 2.34
1925 7051 2.611974 ATGCGCTGGTAAACGAAAAG 57.388 45.000 9.73 0.00 0.00 2.27
1943 7069 0.178987 AGCACCTCGACCGGATCTAT 60.179 55.000 9.46 0.00 0.00 1.98
1948 7074 2.085320 CCTCGACCGGATCTATCGAAT 58.915 52.381 9.46 0.00 43.71 3.34
2023 7149 3.191182 CCAAAAAGGGGAGATCCGG 57.809 57.895 0.00 0.00 36.71 5.14
2024 7150 0.395724 CCAAAAAGGGGAGATCCGGG 60.396 60.000 0.00 0.00 36.71 5.73
2037 7163 1.690219 ATCCGGGGCTTACTGCTCAG 61.690 60.000 0.00 0.00 46.01 3.35
2043 7169 1.680249 GGGCTTACTGCTCAGGGAAAG 60.680 57.143 1.66 3.82 43.01 2.62
2104 7230 5.525012 TGATCTCATTCATTTTTCGATCGCT 59.475 36.000 11.09 0.00 31.04 4.93
2155 7281 8.709386 AATGTGAGAATGTAGTTACAGATGTC 57.291 34.615 0.00 0.00 39.92 3.06
2204 7330 9.309516 CTTGTTCTTAAATCATGAATTGGATGG 57.690 33.333 6.26 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.036022 GCCATCTCCATCCTACCAGC 59.964 60.000 0.00 0.00 0.00 4.85
16 17 1.758440 GCGCCATCTCCATCCTACCA 61.758 60.000 0.00 0.00 0.00 3.25
68 69 1.122632 TACCAACTCCACCTCGGCAA 61.123 55.000 0.00 0.00 33.14 4.52
69 70 1.534476 TACCAACTCCACCTCGGCA 60.534 57.895 0.00 0.00 33.14 5.69
80 81 3.616560 CGGCAAGTATCACAGTACCAACT 60.617 47.826 0.00 0.00 35.91 3.16
86 87 0.899019 TGCCGGCAAGTATCACAGTA 59.101 50.000 30.74 0.00 0.00 2.74
89 90 1.376683 GGTGCCGGCAAGTATCACA 60.377 57.895 34.66 0.58 0.00 3.58
106 107 2.331805 CTACGACGGCGATGAGGG 59.668 66.667 22.49 0.00 41.64 4.30
111 112 1.026182 TACACCACTACGACGGCGAT 61.026 55.000 22.49 3.81 41.64 4.58
114 115 0.737219 ATCTACACCACTACGACGGC 59.263 55.000 0.00 0.00 0.00 5.68
120 121 2.159282 CCGACACCATCTACACCACTAC 60.159 54.545 0.00 0.00 0.00 2.73
122 123 0.895530 CCGACACCATCTACACCACT 59.104 55.000 0.00 0.00 0.00 4.00
144 145 2.678786 ACCTTGGCGGTGACATCTA 58.321 52.632 0.00 0.00 46.80 1.98
145 146 3.483587 ACCTTGGCGGTGACATCT 58.516 55.556 0.00 0.00 46.80 2.90
164 183 0.749649 AGCTCTATCGAGGCCAACTG 59.250 55.000 5.01 0.00 37.75 3.16
198 258 4.814294 GATGCGTCGTCGGGGCTT 62.814 66.667 3.90 3.90 37.56 4.35
221 281 4.129737 ACTCATCACCGCCCGACG 62.130 66.667 0.00 0.00 43.15 5.12
251 311 2.403987 CTAGAGGTCGACGCCACG 59.596 66.667 9.92 0.00 0.00 4.94
281 341 1.927895 CTATGGAAGCTGACGTCACC 58.072 55.000 15.76 14.93 0.00 4.02
302 362 0.108329 CTCGTATTCACCAAGCCCGT 60.108 55.000 0.00 0.00 0.00 5.28
332 392 1.615107 CCGTTCAACGAAGACGAGGC 61.615 60.000 12.68 0.00 46.05 4.70
334 394 0.776451 CACCGTTCAACGAAGACGAG 59.224 55.000 12.68 0.00 46.05 4.18
345 405 1.676968 CCCCACTCATCACCGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
366 426 4.790861 GGTCGACGACGGAAGGCC 62.791 72.222 20.92 0.00 40.21 5.19
379 441 1.153823 GTCGGTGTCATGGAGGTCG 60.154 63.158 0.00 0.00 0.00 4.79
382 444 0.391661 CCAAGTCGGTGTCATGGAGG 60.392 60.000 0.00 0.00 32.82 4.30
436 498 0.821517 AGCCAATACGATGACACGGA 59.178 50.000 0.00 0.00 37.61 4.69
449 511 3.011517 AGGAGGTCGCCAGCCAAT 61.012 61.111 9.29 0.00 0.00 3.16
471 568 2.605823 CCTAGATAGCGCCACGAAGAAG 60.606 54.545 2.29 0.00 0.00 2.85
477 574 0.384309 TTCACCTAGATAGCGCCACG 59.616 55.000 2.29 0.00 0.00 4.94
486 583 4.085733 CCGGAGATGATCTTCACCTAGAT 58.914 47.826 18.58 0.00 37.58 1.98
487 584 3.491342 CCGGAGATGATCTTCACCTAGA 58.509 50.000 18.58 0.00 0.00 2.43
490 587 0.755686 GCCGGAGATGATCTTCACCT 59.244 55.000 18.58 0.00 0.00 4.00
499 596 2.180769 CGACGTTGCCGGAGATGA 59.819 61.111 5.05 0.00 38.78 2.92
510 607 1.402456 CCGGAAGATGAAGTCGACGTT 60.402 52.381 10.46 4.92 0.00 3.99
515 612 0.525668 CGGACCGGAAGATGAAGTCG 60.526 60.000 9.46 0.00 0.00 4.18
535 632 0.974010 TTGTAGGATCGGACCGCCTT 60.974 55.000 16.94 7.09 33.28 4.35
536 633 0.974010 TTTGTAGGATCGGACCGCCT 60.974 55.000 16.13 16.13 35.82 5.52
551 648 3.066760 CCTTTCCGAAGAGCAAAGTTTGT 59.933 43.478 16.70 4.16 34.71 2.83
553 650 3.066760 CACCTTTCCGAAGAGCAAAGTTT 59.933 43.478 0.00 0.00 34.71 2.66
569 666 0.988832 TGGATACGAAGCCCACCTTT 59.011 50.000 0.00 0.00 42.51 3.11
583 680 1.478916 TCGGCGACTTCAACATGGATA 59.521 47.619 4.99 0.00 0.00 2.59
584 681 0.249120 TCGGCGACTTCAACATGGAT 59.751 50.000 4.99 0.00 0.00 3.41
680 777 1.897423 CCACTATCCCACAGCGTCA 59.103 57.895 0.00 0.00 0.00 4.35
682 779 2.584608 GCCACTATCCCACAGCGT 59.415 61.111 0.00 0.00 0.00 5.07
768 865 4.304110 TCTTCGAATTTGCGTGAACTAGT 58.696 39.130 0.00 0.00 0.00 2.57
784 881 4.733815 GCTCGTCCATGATAACTTCTTCGA 60.734 45.833 0.00 0.00 0.00 3.71
799 896 2.659063 CCTCCATGTGGCTCGTCCA 61.659 63.158 0.00 0.00 44.18 4.02
814 911 3.203716 ACCACACGAGAAAGTTTTCCTC 58.796 45.455 0.00 0.00 37.92 3.71
818 915 3.308866 CGAGAACCACACGAGAAAGTTTT 59.691 43.478 0.00 0.00 34.75 2.43
825 922 2.649034 GGCGAGAACCACACGAGA 59.351 61.111 0.00 0.00 34.75 4.04
827 924 4.351938 CCGGCGAGAACCACACGA 62.352 66.667 9.30 0.00 34.75 4.35
839 936 3.799755 CCGAAGAAAAGCCCGGCG 61.800 66.667 3.05 0.00 35.29 6.46
850 947 6.602406 AGAAGCAAGTTACTAGATACCGAAGA 59.398 38.462 0.00 0.00 0.00 2.87
863 960 1.127582 CAGCGAGCAGAAGCAAGTTAC 59.872 52.381 0.00 0.00 45.49 2.50
959 1058 9.991906 CCGTACTTAATAATAGAAGGATTTGGA 57.008 33.333 0.00 0.00 0.00 3.53
1017 1116 5.829924 AGAAGCATCAAACCTCTCTTTTTCA 59.170 36.000 0.00 0.00 0.00 2.69
1093 1192 7.350744 ACATGGCAATTAAATCATTAGCTGA 57.649 32.000 0.00 0.00 38.53 4.26
1342 6467 6.164176 GGAAGAGAGATTTTACGGAAAGTGA 58.836 40.000 0.00 0.00 0.00 3.41
1347 6472 3.841845 TGGGGAAGAGAGATTTTACGGAA 59.158 43.478 0.00 0.00 0.00 4.30
1348 6473 3.446968 TGGGGAAGAGAGATTTTACGGA 58.553 45.455 0.00 0.00 0.00 4.69
1349 6474 3.906720 TGGGGAAGAGAGATTTTACGG 57.093 47.619 0.00 0.00 0.00 4.02
1350 6475 4.991687 GCTATGGGGAAGAGAGATTTTACG 59.008 45.833 0.00 0.00 0.00 3.18
1351 6476 5.309638 GGCTATGGGGAAGAGAGATTTTAC 58.690 45.833 0.00 0.00 0.00 2.01
1352 6477 4.351111 GGGCTATGGGGAAGAGAGATTTTA 59.649 45.833 0.00 0.00 0.00 1.52
1353 6478 3.139211 GGGCTATGGGGAAGAGAGATTTT 59.861 47.826 0.00 0.00 0.00 1.82
1354 6479 2.713708 GGGCTATGGGGAAGAGAGATTT 59.286 50.000 0.00 0.00 0.00 2.17
1355 6480 2.089696 AGGGCTATGGGGAAGAGAGATT 60.090 50.000 0.00 0.00 0.00 2.40
1356 6481 1.511747 AGGGCTATGGGGAAGAGAGAT 59.488 52.381 0.00 0.00 0.00 2.75
1357 6482 0.944999 AGGGCTATGGGGAAGAGAGA 59.055 55.000 0.00 0.00 0.00 3.10
1358 6483 2.704190 TAGGGCTATGGGGAAGAGAG 57.296 55.000 0.00 0.00 0.00 3.20
1359 6484 2.427889 CCTTAGGGCTATGGGGAAGAGA 60.428 54.545 0.00 0.00 0.00 3.10
1360 6485 1.981495 CCTTAGGGCTATGGGGAAGAG 59.019 57.143 0.00 0.00 0.00 2.85
1361 6486 2.118403 CCTTAGGGCTATGGGGAAGA 57.882 55.000 0.00 0.00 0.00 2.87
1395 6520 4.563184 CGTATCTTATCTTTCGGGCATAGC 59.437 45.833 0.00 0.00 0.00 2.97
1399 6524 3.380479 CCGTATCTTATCTTTCGGGCA 57.620 47.619 0.00 0.00 35.25 5.36
1402 6527 4.613167 CGTCTCCCGTATCTTATCTTTCGG 60.613 50.000 0.00 0.00 38.05 4.30
1479 6604 1.425448 ACCTTCACTTTAGGCCAAGCT 59.575 47.619 5.01 0.00 36.17 3.74
1482 6607 2.175931 TCCAACCTTCACTTTAGGCCAA 59.824 45.455 5.01 0.00 36.17 4.52
1487 6612 2.642807 TCCCCTCCAACCTTCACTTTAG 59.357 50.000 0.00 0.00 0.00 1.85
1498 6623 1.120530 TTCGCTCTATCCCCTCCAAC 58.879 55.000 0.00 0.00 0.00 3.77
1507 6632 2.667724 CGTACGGGGATTTCGCTCTATC 60.668 54.545 7.57 0.00 0.00 2.08
1527 6652 5.848138 GGTTACACCTTCGGAATACCCCG 62.848 56.522 0.00 0.00 42.22 5.73
1589 6714 2.203294 GGTGAACCAACAGGCCGT 60.203 61.111 0.00 0.00 35.64 5.68
1667 6792 0.984230 AACGCAATTCAGGGAGGAGA 59.016 50.000 0.00 0.00 0.00 3.71
1676 6801 1.400142 CGGCTCCAATAACGCAATTCA 59.600 47.619 0.00 0.00 0.00 2.57
1698 6823 2.170607 TCCACTAACAGCTATTCCTGGC 59.829 50.000 0.00 0.00 37.16 4.85
1699 6824 3.197766 TGTCCACTAACAGCTATTCCTGG 59.802 47.826 0.00 0.00 37.16 4.45
1700 6825 4.184629 GTGTCCACTAACAGCTATTCCTG 58.815 47.826 0.00 0.00 38.78 3.86
1701 6826 3.197983 GGTGTCCACTAACAGCTATTCCT 59.802 47.826 0.00 0.00 42.82 3.36
1702 6827 3.532542 GGTGTCCACTAACAGCTATTCC 58.467 50.000 0.00 0.00 42.82 3.01
1708 6833 1.621814 TGGTAGGTGTCCACTAACAGC 59.378 52.381 0.00 0.00 45.68 4.40
1716 6841 2.158726 GGTGAAAAGTGGTAGGTGTCCA 60.159 50.000 0.00 0.00 0.00 4.02
1717 6842 2.158726 TGGTGAAAAGTGGTAGGTGTCC 60.159 50.000 0.00 0.00 0.00 4.02
1718 6843 3.139077 CTGGTGAAAAGTGGTAGGTGTC 58.861 50.000 0.00 0.00 0.00 3.67
1719 6844 2.508300 ACTGGTGAAAAGTGGTAGGTGT 59.492 45.455 0.00 0.00 0.00 4.16
1720 6845 3.208747 ACTGGTGAAAAGTGGTAGGTG 57.791 47.619 0.00 0.00 0.00 4.00
1721 6846 4.657039 TCTTACTGGTGAAAAGTGGTAGGT 59.343 41.667 0.00 0.00 0.00 3.08
1722 6847 5.011738 TCTCTTACTGGTGAAAAGTGGTAGG 59.988 44.000 0.00 0.00 0.00 3.18
1723 6848 6.097915 TCTCTTACTGGTGAAAAGTGGTAG 57.902 41.667 0.00 0.00 0.00 3.18
1724 6849 5.510861 GCTCTCTTACTGGTGAAAAGTGGTA 60.511 44.000 0.00 0.00 0.00 3.25
1725 6850 4.743955 GCTCTCTTACTGGTGAAAAGTGGT 60.744 45.833 0.00 0.00 0.00 4.16
1726 6851 3.748568 GCTCTCTTACTGGTGAAAAGTGG 59.251 47.826 0.00 0.00 0.00 4.00
1727 6852 3.748568 GGCTCTCTTACTGGTGAAAAGTG 59.251 47.826 0.00 0.00 0.00 3.16
1728 6853 3.244596 GGGCTCTCTTACTGGTGAAAAGT 60.245 47.826 0.00 0.00 0.00 2.66
1729 6854 3.339141 GGGCTCTCTTACTGGTGAAAAG 58.661 50.000 0.00 0.00 0.00 2.27
1730 6855 2.039879 GGGGCTCTCTTACTGGTGAAAA 59.960 50.000 0.00 0.00 0.00 2.29
1731 6856 1.628846 GGGGCTCTCTTACTGGTGAAA 59.371 52.381 0.00 0.00 0.00 2.69
1732 6857 1.203313 AGGGGCTCTCTTACTGGTGAA 60.203 52.381 0.00 0.00 0.00 3.18
1733 6858 0.413832 AGGGGCTCTCTTACTGGTGA 59.586 55.000 0.00 0.00 0.00 4.02
1734 6859 0.827368 GAGGGGCTCTCTTACTGGTG 59.173 60.000 7.26 0.00 39.38 4.17
1735 6860 3.308626 GAGGGGCTCTCTTACTGGT 57.691 57.895 7.26 0.00 39.38 4.00
1743 6868 7.736893 TCTTAATGTATTAAAGAGGGGCTCTC 58.263 38.462 6.17 6.17 40.28 3.20
1744 6869 7.691993 TCTTAATGTATTAAAGAGGGGCTCT 57.308 36.000 0.00 0.00 43.37 4.09
1745 6870 8.747538 TTTCTTAATGTATTAAAGAGGGGCTC 57.252 34.615 0.00 0.00 32.39 4.70
1746 6871 9.715119 ATTTTCTTAATGTATTAAAGAGGGGCT 57.285 29.630 0.00 0.00 32.39 5.19
1759 6884 8.682710 GCCCTGTGAACATATTTTCTTAATGTA 58.317 33.333 3.41 0.00 33.59 2.29
1760 6885 7.363793 GGCCCTGTGAACATATTTTCTTAATGT 60.364 37.037 0.00 0.00 35.40 2.71
1761 6886 6.980397 GGCCCTGTGAACATATTTTCTTAATG 59.020 38.462 0.00 0.00 0.00 1.90
1762 6887 6.667414 TGGCCCTGTGAACATATTTTCTTAAT 59.333 34.615 0.00 0.00 0.00 1.40
1763 6888 6.013379 TGGCCCTGTGAACATATTTTCTTAA 58.987 36.000 0.00 0.00 0.00 1.85
1764 6889 5.575157 TGGCCCTGTGAACATATTTTCTTA 58.425 37.500 0.00 0.00 0.00 2.10
1765 6890 4.415596 TGGCCCTGTGAACATATTTTCTT 58.584 39.130 0.00 0.00 0.00 2.52
1766 6891 4.019174 CTGGCCCTGTGAACATATTTTCT 58.981 43.478 0.00 0.00 0.00 2.52
1767 6892 3.131046 CCTGGCCCTGTGAACATATTTTC 59.869 47.826 0.00 0.00 0.00 2.29
1768 6893 3.099141 CCTGGCCCTGTGAACATATTTT 58.901 45.455 0.00 0.00 0.00 1.82
1769 6894 2.311542 TCCTGGCCCTGTGAACATATTT 59.688 45.455 0.00 0.00 0.00 1.40
1770 6895 1.922447 TCCTGGCCCTGTGAACATATT 59.078 47.619 0.00 0.00 0.00 1.28
1771 6896 1.595311 TCCTGGCCCTGTGAACATAT 58.405 50.000 0.00 0.00 0.00 1.78
1772 6897 1.367346 TTCCTGGCCCTGTGAACATA 58.633 50.000 0.00 0.00 0.00 2.29
1773 6898 0.482446 TTTCCTGGCCCTGTGAACAT 59.518 50.000 0.00 0.00 0.00 2.71
1774 6899 0.260230 TTTTCCTGGCCCTGTGAACA 59.740 50.000 0.00 0.00 0.00 3.18
1775 6900 0.961753 CTTTTCCTGGCCCTGTGAAC 59.038 55.000 0.00 0.00 0.00 3.18
1776 6901 0.827507 GCTTTTCCTGGCCCTGTGAA 60.828 55.000 0.00 0.00 0.00 3.18
1777 6902 1.228552 GCTTTTCCTGGCCCTGTGA 60.229 57.895 0.00 0.00 0.00 3.58
1778 6903 1.228675 AGCTTTTCCTGGCCCTGTG 60.229 57.895 0.00 0.00 0.00 3.66
1779 6904 1.228675 CAGCTTTTCCTGGCCCTGT 60.229 57.895 0.00 0.00 0.00 4.00
1780 6905 0.829182 AACAGCTTTTCCTGGCCCTG 60.829 55.000 0.00 0.00 37.16 4.45
1781 6906 0.777446 TAACAGCTTTTCCTGGCCCT 59.223 50.000 0.00 0.00 37.16 5.19
1782 6907 1.177401 CTAACAGCTTTTCCTGGCCC 58.823 55.000 0.00 0.00 37.16 5.80
1783 6908 1.541588 CACTAACAGCTTTTCCTGGCC 59.458 52.381 0.00 0.00 37.16 5.36
1925 7051 0.241481 GATAGATCCGGTCGAGGTGC 59.759 60.000 0.00 0.00 0.00 5.01
1943 7069 1.449601 GGCGGCCTTCTTCATTCGA 60.450 57.895 12.87 0.00 0.00 3.71
2037 7163 3.127425 CCATAAGGTCGGATCTTTCCC 57.873 52.381 9.10 0.00 39.01 3.97
2162 7288 6.049955 AGAACAAGGGAACGAGATATTGAA 57.950 37.500 0.00 0.00 0.00 2.69
2177 7303 9.309516 CATCCAATTCATGATTTAAGAACAAGG 57.690 33.333 0.00 0.00 0.00 3.61
2204 7330 4.661993 TCATACTTGATGAAACGCACAC 57.338 40.909 0.00 0.00 41.80 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.