AutoCloner

Multiple sequence alignment - TraesCS4A01G426600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G426600	chr4A	100.000	2264	0	0	1	2264	698023520	698021257	0.000000e+00	4181
1	TraesCS4A01G426600	chr4A	93.398	1757	93	7	1	1735	514407630	514405875	0.000000e+00	2580
2	TraesCS4A01G426600	chr2B	92.883	2248	91	20	1	2233	798600976	798603169	0.000000e+00	3201
3	TraesCS4A01G426600	chr2B	92.517	1764	100	15	1	1735	579908099	579909859	0.000000e+00	2497
4	TraesCS4A01G426600	chr2B	91.739	1719	104	9	1	1698	649657461	649655760	0.000000e+00	2353
5	TraesCS4A01G426600	chr2B	91.049	1687	86	17	568	2233	154584964	154583322	0.000000e+00	2218
6	TraesCS4A01G426600	chr2B	82.877	292	36	10	1980	2264	42195463	42195747	1.340000e-62	250
7	TraesCS4A01G426600	chr5A	92.190	2279	92	21	1	2264	591473773	591475980	0.000000e+00	3144
8	TraesCS4A01G426600	chr1B	91.882	2279	99	23	1	2264	649301273	649299066	0.000000e+00	3105
9	TraesCS4A01G426600	chr1B	91.940	1675	73	13	621	2264	550439478	550437835	0.000000e+00	2289
10	TraesCS4A01G426600	chr1B	85.200	250	13	2	2015	2264	357900300	357900075	3.760000e-58	235
11	TraesCS4A01G426600	chr7A	91.751	2279	102	26	1	2264	497719483	497717276	0.000000e+00	3088
12	TraesCS4A01G426600	chr5B	93.305	2106	79	15	1	2091	297110539	297112597	0.000000e+00	3051
13	TraesCS4A01G426600	chr5B	95.917	1739	46	7	1	1717	426532757	426534492	0.000000e+00	2795
14	TraesCS4A01G426600	chr5B	95.455	1738	55	6	1	1717	658084097	658085831	0.000000e+00	2750
15	TraesCS4A01G426600	chr5B	92.010	1552	95	6	1	1524	16010569	16012119	0.000000e+00	2152
16	TraesCS4A01G426600	chr5B	85.714	252	13	1	2013	2264	454662783	454663011	6.250000e-61	244
17	TraesCS4A01G426600	chr6A	95.444	1756	59	3	1	1735	387215226	387216981	0.000000e+00	2780
18	TraesCS4A01G426600	chr6A	89.773	1672	94	17	617	2258	466679537	466681161	0.000000e+00	2069
19	TraesCS4A01G426600	chr7D	94.343	1750	84	1	1	1735	16799697	16797948	0.000000e+00	2669
20	TraesCS4A01G426600	chr3B	92.369	1756	106	6	1	1735	40993586	40991838	0.000000e+00	2475
21	TraesCS4A01G426600	chr7B	92.666	1718	84	12	568	2264	577211902	577213598	0.000000e+00	2436
22	TraesCS4A01G426600	chr6B	91.759	1711	84	19	578	2264	114144248	114142571	0.000000e+00	2326
23	TraesCS4A01G426600	chrUn	91.436	1191	63	12	1089	2264	361056781	361055615	0.000000e+00	1598
24	TraesCS4A01G426600	chrUn	87.840	773	61	15	1343	2091	463714422	463715185	0.000000e+00	876
25	TraesCS4A01G426600	chrUn	87.037	378	25	9	1887	2264	17580370	17580723	2.710000e-109	405
26	TraesCS4A01G426600	chr1D	90.078	514	32	4	1220	1717	487707687	487707177	0.000000e+00	649
27	TraesCS4A01G426600	chr1D	89.928	417	26	3	1338	1739	490889982	490890397	7.160000e-145	523

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G426600	chr4A	698021257	698023520	2263	True	4181	4181	100.000	1	2264	1	chr4A.!!$R2	2263
1	TraesCS4A01G426600	chr4A	514405875	514407630	1755	True	2580	2580	93.398	1	1735	1	chr4A.!!$R1	1734
2	TraesCS4A01G426600	chr2B	798600976	798603169	2193	False	3201	3201	92.883	1	2233	1	chr2B.!!$F3	2232
3	TraesCS4A01G426600	chr2B	579908099	579909859	1760	False	2497	2497	92.517	1	1735	1	chr2B.!!$F2	1734
4	TraesCS4A01G426600	chr2B	649655760	649657461	1701	True	2353	2353	91.739	1	1698	1	chr2B.!!$R2	1697
5	TraesCS4A01G426600	chr2B	154583322	154584964	1642	True	2218	2218	91.049	568	2233	1	chr2B.!!$R1	1665
6	TraesCS4A01G426600	chr5A	591473773	591475980	2207	False	3144	3144	92.190	1	2264	1	chr5A.!!$F1	2263
7	TraesCS4A01G426600	chr1B	649299066	649301273	2207	True	3105	3105	91.882	1	2264	1	chr1B.!!$R3	2263
8	TraesCS4A01G426600	chr1B	550437835	550439478	1643	True	2289	2289	91.940	621	2264	1	chr1B.!!$R2	1643
9	TraesCS4A01G426600	chr7A	497717276	497719483	2207	True	3088	3088	91.751	1	2264	1	chr7A.!!$R1	2263
10	TraesCS4A01G426600	chr5B	297110539	297112597	2058	False	3051	3051	93.305	1	2091	1	chr5B.!!$F2	2090
11	TraesCS4A01G426600	chr5B	426532757	426534492	1735	False	2795	2795	95.917	1	1717	1	chr5B.!!$F3	1716
12	TraesCS4A01G426600	chr5B	658084097	658085831	1734	False	2750	2750	95.455	1	1717	1	chr5B.!!$F5	1716
13	TraesCS4A01G426600	chr5B	16010569	16012119	1550	False	2152	2152	92.010	1	1524	1	chr5B.!!$F1	1523
14	TraesCS4A01G426600	chr6A	387215226	387216981	1755	False	2780	2780	95.444	1	1735	1	chr6A.!!$F1	1734
15	TraesCS4A01G426600	chr6A	466679537	466681161	1624	False	2069	2069	89.773	617	2258	1	chr6A.!!$F2	1641
16	TraesCS4A01G426600	chr7D	16797948	16799697	1749	True	2669	2669	94.343	1	1735	1	chr7D.!!$R1	1734
17	TraesCS4A01G426600	chr3B	40991838	40993586	1748	True	2475	2475	92.369	1	1735	1	chr3B.!!$R1	1734
18	TraesCS4A01G426600	chr7B	577211902	577213598	1696	False	2436	2436	92.666	568	2264	1	chr7B.!!$F1	1696
19	TraesCS4A01G426600	chr6B	114142571	114144248	1677	True	2326	2326	91.759	578	2264	1	chr6B.!!$R1	1686
20	TraesCS4A01G426600	chrUn	361055615	361056781	1166	True	1598	1598	91.436	1089	2264	1	chrUn.!!$R1	1175
21	TraesCS4A01G426600	chrUn	463714422	463715185	763	False	876	876	87.840	1343	2091	1	chrUn.!!$F2	748
22	TraesCS4A01G426600	chr1D	487707177	487707687	510	True	649	649	90.078	1220	1717	1	chr1D.!!$R1	497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
769	1018	0.622136	TAGAGGTGGTGGTCGAGCTA	59.378	55.0	16.64	0.0	30.83	3.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2153	2618	0.034059	CCTGGCGTCTGGATATGGAC	59.966	60.0	7.22	0.0	34.32	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
97	98	4.022603	ACAATATGGTGGTGCTGCATTTA	58.977	39.130	5.27	0.00	0.00	1.40
123	124	1.120530	AACTGAAGACTCGGTGGTGT	58.879	50.000	0.00	0.00	40.49	4.16
404	405	2.057922	GGGTGATATGGATGACCTGGT	58.942	52.381	0.00	0.00	39.21	4.00
414	415	4.335485	TGGATGACCTGGTTGGATACACA	61.335	47.826	0.00	0.00	41.69	3.72
480	482	2.054799	ACTATCAACTGTGGGGTGTGT	58.945	47.619	0.00	0.00	33.62	3.72
501	503	1.534729	GTGAAGGGGGACACAATGAC	58.465	55.000	0.00	0.00	37.05	3.06
516	518	1.453155	ATGACCGGACATGCAAGAAC	58.547	50.000	18.74	0.00	0.00	3.01
748	967	1.292223	GGTCGAGCAGGCACAAGTA	59.708	57.895	10.30	0.00	0.00	2.24
765	1014	1.632409	AGTACTAGAGGTGGTGGTCGA	59.368	52.381	0.00	0.00	0.00	4.20
766	1015	2.015587	GTACTAGAGGTGGTGGTCGAG	58.984	57.143	0.00	0.00	0.00	4.04
767	1016	0.966370	ACTAGAGGTGGTGGTCGAGC	60.966	60.000	7.89	7.89	0.00	5.03
768	1017	0.681564	CTAGAGGTGGTGGTCGAGCT	60.682	60.000	16.64	0.00	33.17	4.09
769	1018	0.622136	TAGAGGTGGTGGTCGAGCTA	59.378	55.000	16.64	0.00	30.83	3.32
770	1019	0.681564	AGAGGTGGTGGTCGAGCTAG	60.682	60.000	16.64	0.00	30.83	3.42
771	1020	2.184579	GGTGGTGGTCGAGCTAGC	59.815	66.667	16.64	6.62	0.00	3.42
772	1021	2.646175	GGTGGTGGTCGAGCTAGCA	61.646	63.158	18.83	14.25	33.68	3.49
773	1022	1.446272	GTGGTGGTCGAGCTAGCAC	60.446	63.158	23.19	23.19	46.59	4.40
775	1024	4.988065	GTGGTCGAGCTAGCACAA	57.012	55.556	18.83	0.00	45.11	3.33
776	1025	3.210857	GTGGTCGAGCTAGCACAAA	57.789	52.632	18.83	0.00	45.11	2.83
777	1026	1.726853	GTGGTCGAGCTAGCACAAAT	58.273	50.000	18.83	0.00	45.11	2.32
778	1027	1.394917	GTGGTCGAGCTAGCACAAATG	59.605	52.381	18.83	0.00	45.11	2.32
799	1048	0.965866	TAGAGGTGGTGGTCGAGCAG	60.966	60.000	19.24	0.00	30.97	4.24
858	1137	3.222603	GGTTGATAATGGATCGGCCTTT	58.777	45.455	0.00	0.00	37.38	3.11
1074	1353	1.519455	GAAGACGTGGATGGAGGCG	60.519	63.158	0.00	0.00	0.00	5.52
1176	1461	1.227999	ACCGCAACAAGTCATGGACG	61.228	55.000	0.00	0.00	37.67	4.79
1341	1626	5.102783	TGGTTTATATGTAGTCCCCTCCTCT	60.103	44.000	0.00	0.00	0.00	3.69
1407	1692	2.829094	TCCAAGAGGACCAACGTCA	58.171	52.632	0.00	0.00	41.13	4.35
1529	1829	0.892063	AGAGAAGGAGGCTCGTCAAC	59.108	55.000	10.54	7.77	37.46	3.18
1561	1861	2.110578	AGAAAACTTGCAAGGGCTTGT	58.889	42.857	29.18	14.71	42.31	3.16
1638	1950	5.825593	ACTCAGTAGACAAATGGAAAGGA	57.174	39.130	0.00	0.00	0.00	3.36
1939	2263	1.656441	CGTCTGGCTTGCTTTGCTT	59.344	52.632	0.00	0.00	0.00	3.91
2060	2525	2.906388	TGCCTTGCTTTGCTCGCA	60.906	55.556	0.00	0.00	35.22	5.10
2090	2555	4.368391	CAGGCTGTCTGGTGTGTC	57.632	61.111	6.28	0.00	39.76	3.67
2091	2556	1.665916	CAGGCTGTCTGGTGTGTCG	60.666	63.158	6.28	0.00	39.76	4.35
2092	2557	3.044305	GGCTGTCTGGTGTGTCGC	61.044	66.667	0.00	0.00	0.00	5.19
2093	2558	3.406361	GCTGTCTGGTGTGTCGCG	61.406	66.667	0.00	0.00	0.00	5.87
2094	2559	3.406361	CTGTCTGGTGTGTCGCGC	61.406	66.667	0.00	0.00	0.00	6.86
2095	2560	4.214327	TGTCTGGTGTGTCGCGCA	62.214	61.111	8.75	0.00	0.00	6.09
2096	2561	3.406361	GTCTGGTGTGTCGCGCAG	61.406	66.667	8.75	1.31	0.00	5.18
2097	2562	4.662961	TCTGGTGTGTCGCGCAGG	62.663	66.667	8.75	0.00	0.00	4.85
2098	2563	4.969196	CTGGTGTGTCGCGCAGGT	62.969	66.667	8.75	0.00	0.00	4.00
2100	2565	4.961511	GGTGTGTCGCGCAGGTGA	62.962	66.667	8.75	0.00	0.00	4.02
2105	2570	4.357947	GTCGCGCAGGTGACCAGA	62.358	66.667	8.75	0.00	45.75	3.86
2106	2571	4.357947	TCGCGCAGGTGACCAGAC	62.358	66.667	8.75	0.00	0.00	3.51
2108	2573	4.664677	GCGCAGGTGACCAGACGT	62.665	66.667	3.63	0.00	0.00	4.34
2113	2578	0.179084	CAGGTGACCAGACGTGTGTT	60.179	55.000	12.16	0.00	0.00	3.32
2123	2588	2.807967	CAGACGTGTGTTTGATGGACAT	59.192	45.455	4.19	0.00	32.09	3.06
2138	2603	0.741221	GACATCCAGACGCCAAGGTC	60.741	60.000	0.00	0.00	37.19	3.85
2150	2615	1.746615	CAAGGTCCATGGCGTCTGG	60.747	63.158	6.96	0.00	34.93	3.86
2151	2616	2.224159	AAGGTCCATGGCGTCTGGT	61.224	57.895	6.96	0.00	35.19	4.00
2153	2618	2.040544	GGTCCATGGCGTCTGGTTG	61.041	63.158	6.96	0.00	35.19	3.77
2154	2619	1.302511	GTCCATGGCGTCTGGTTGT	60.303	57.895	6.96	0.00	35.19	3.32
2158	2623	0.677731	CATGGCGTCTGGTTGTCCAT	60.678	55.000	0.00	0.00	43.43	3.41
2160	2625	0.908910	TGGCGTCTGGTTGTCCATAT	59.091	50.000	0.00	0.00	43.43	1.78
2173	2638	1.121407	TCCATATCCAGACGCCAGGG	61.121	60.000	0.00	0.00	0.00	4.45
2194	2659	2.265739	CTGGCGTCTGGCTTGCTA	59.734	61.111	0.00	0.00	42.94	3.49
2217	2682	3.226242	ACGCAGGTGACCAGACAA	58.774	55.556	3.63	0.00	0.00	3.18
2220	2685	1.072159	GCAGGTGACCAGACAAGCT	59.928	57.895	3.63	0.00	0.00	3.74
2253	2718	2.981302	TGGACATCCAGACGCCAG	59.019	61.111	0.00	0.00	42.01	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
97	98	2.434702	ACCGAGTCTTCAGTTTCACCTT	59.565	45.455	0.00	0.00	0.00	3.50
123	124	0.255033	TACTAGGCCTCTCGCACTGA	59.745	55.000	9.68	0.00	40.31	3.41
404	405	7.537596	AATTGTTTCATTCCTGTGTATCCAA	57.462	32.000	0.00	0.00	0.00	3.53
414	415	4.082245	CCGCTACCAAATTGTTTCATTCCT	60.082	41.667	0.00	0.00	0.00	3.36
417	418	4.279671	TGACCGCTACCAAATTGTTTCATT	59.720	37.500	0.00	0.00	0.00	2.57
480	482	0.112218	CATTGTGTCCCCCTTCACCA	59.888	55.000	0.00	0.00	34.14	4.17
501	503	1.522668	TCTTGTTCTTGCATGTCCGG	58.477	50.000	0.00	0.00	0.00	5.14
572	574	1.293498	CCACCGTCACCTCTTCCAG	59.707	63.158	0.00	0.00	0.00	3.86
748	967	0.966370	GCTCGACCACCACCTCTAGT	60.966	60.000	0.00	0.00	0.00	2.57
768	1017	2.571653	ACCACCTCTAGCATTTGTGCTA	59.428	45.455	9.51	9.51	44.28	3.49
770	1019	1.470098	CACCACCTCTAGCATTTGTGC	59.530	52.381	0.00	0.00	0.00	4.57
771	1020	2.086869	CCACCACCTCTAGCATTTGTG	58.913	52.381	0.00	0.00	0.00	3.33
772	1021	1.705186	ACCACCACCTCTAGCATTTGT	59.295	47.619	0.00	0.00	0.00	2.83
773	1022	2.359900	GACCACCACCTCTAGCATTTG	58.640	52.381	0.00	0.00	0.00	2.32
774	1023	1.066143	CGACCACCACCTCTAGCATTT	60.066	52.381	0.00	0.00	0.00	2.32
775	1024	0.537188	CGACCACCACCTCTAGCATT	59.463	55.000	0.00	0.00	0.00	3.56
776	1025	0.324368	TCGACCACCACCTCTAGCAT	60.324	55.000	0.00	0.00	0.00	3.79
777	1026	0.965866	CTCGACCACCACCTCTAGCA	60.966	60.000	0.00	0.00	0.00	3.49
778	1027	1.810532	CTCGACCACCACCTCTAGC	59.189	63.158	0.00	0.00	0.00	3.42
779	1028	0.965866	TGCTCGACCACCACCTCTAG	60.966	60.000	0.00	0.00	0.00	2.43
780	1029	0.965866	CTGCTCGACCACCACCTCTA	60.966	60.000	0.00	0.00	0.00	2.43
781	1030	2.203640	TGCTCGACCACCACCTCT	60.204	61.111	0.00	0.00	0.00	3.69
782	1031	2.262915	CTGCTCGACCACCACCTC	59.737	66.667	0.00	0.00	0.00	3.85
783	1032	3.314331	CCTGCTCGACCACCACCT	61.314	66.667	0.00	0.00	0.00	4.00
785	1034	4.314440	TGCCTGCTCGACCACCAC	62.314	66.667	0.00	0.00	0.00	4.16
786	1035	4.314440	GTGCCTGCTCGACCACCA	62.314	66.667	0.00	0.00	0.00	4.17
787	1036	3.825160	TTGTGCCTGCTCGACCACC	62.825	63.158	0.00	0.00	0.00	4.61
788	1037	2.280797	TTGTGCCTGCTCGACCAC	60.281	61.111	0.00	0.00	0.00	4.16
789	1038	2.031012	CTTGTGCCTGCTCGACCA	59.969	61.111	0.00	0.00	0.00	4.02
790	1039	2.031163	ACTTGTGCCTGCTCGACC	59.969	61.111	0.00	0.00	0.00	4.79
799	1048	0.674895	CCACCTCTAGCACTTGTGCC	60.675	60.000	20.39	4.86	34.90	5.01
858	1137	6.194235	ACCATCTGGATTAAGCAAATAACCA	58.806	36.000	2.55	0.00	38.94	3.67
1074	1353	3.325135	TCTCCTTCTCCTTGTCCAAACTC	59.675	47.826	0.00	0.00	0.00	3.01
1176	1461	4.024302	CACACGAAAAACCTTCTACCTTCC	60.024	45.833	0.00	0.00	0.00	3.46
1407	1692	2.716217	GCTGCCTCTGTAACCAATCTT	58.284	47.619	0.00	0.00	0.00	2.40
1561	1861	1.657751	CGTCCTCCTCTCGTGCATCA	61.658	60.000	0.00	0.00	0.00	3.07
1638	1950	1.082117	GTTCATCATCGACGCCGGTT	61.082	55.000	1.90	0.00	36.24	4.44
1868	2183	3.478063	GTGTTTTTGCACACAACTTTGC	58.522	40.909	0.60	0.00	45.57	3.68
1939	2263	3.519973	CTGTCTGGTCACCTGCGCA	62.520	63.158	10.98	10.98	0.00	6.09
2045	2510	1.081641	CTGTGCGAGCAAAGCAAGG	60.082	57.895	1.94	0.00	46.97	3.61
2060	2525	1.460305	AGCCTGTCTGGTCACCTGT	60.460	57.895	0.00	0.00	38.35	4.00
2086	2551	4.961511	TGGTCACCTGCGCGACAC	62.962	66.667	12.10	0.00	33.66	3.67
2087	2552	4.662961	CTGGTCACCTGCGCGACA	62.663	66.667	12.10	6.68	33.66	4.35
2088	2553	4.357947	TCTGGTCACCTGCGCGAC	62.358	66.667	12.10	3.44	0.00	5.19
2089	2554	4.357947	GTCTGGTCACCTGCGCGA	62.358	66.667	12.10	0.00	0.00	5.87
2091	2556	4.664677	ACGTCTGGTCACCTGCGC	62.665	66.667	14.43	0.00	0.00	6.09
2092	2557	2.734723	CACGTCTGGTCACCTGCG	60.735	66.667	13.38	13.38	0.00	5.18
2093	2558	1.956170	CACACGTCTGGTCACCTGC	60.956	63.158	0.00	0.00	0.00	4.85
2094	2559	0.179084	AACACACGTCTGGTCACCTG	60.179	55.000	0.00	0.00	0.00	4.00
2095	2560	0.539986	AAACACACGTCTGGTCACCT	59.460	50.000	0.00	0.00	0.00	4.00
2096	2561	0.655733	CAAACACACGTCTGGTCACC	59.344	55.000	0.00	0.00	0.00	4.02
2097	2562	1.647346	TCAAACACACGTCTGGTCAC	58.353	50.000	0.00	0.00	0.00	3.67
2098	2563	2.209273	CATCAAACACACGTCTGGTCA	58.791	47.619	0.00	0.00	0.00	4.02
2099	2564	1.531149	CCATCAAACACACGTCTGGTC	59.469	52.381	0.00	0.00	0.00	4.02
2100	2565	1.140052	TCCATCAAACACACGTCTGGT	59.860	47.619	0.00	0.00	0.00	4.00
2101	2566	1.531149	GTCCATCAAACACACGTCTGG	59.469	52.381	0.00	0.00	0.00	3.86
2102	2567	2.209273	TGTCCATCAAACACACGTCTG	58.791	47.619	0.00	0.00	0.00	3.51
2103	2568	2.613026	TGTCCATCAAACACACGTCT	57.387	45.000	0.00	0.00	0.00	4.18
2104	2569	2.159627	GGATGTCCATCAAACACACGTC	59.840	50.000	9.34	0.00	39.54	4.34
2105	2570	2.151202	GGATGTCCATCAAACACACGT	58.849	47.619	9.34	0.00	39.54	4.49
2106	2571	2.150390	TGGATGTCCATCAAACACACG	58.850	47.619	9.34	0.00	42.01	4.49
2107	2572	3.189287	GTCTGGATGTCCATCAAACACAC	59.811	47.826	9.34	0.00	46.46	3.82
2108	2573	3.411446	GTCTGGATGTCCATCAAACACA	58.589	45.455	9.34	0.00	46.46	3.72
2113	2578	0.107703	GGCGTCTGGATGTCCATCAA	60.108	55.000	9.34	0.00	46.46	2.57
2123	2588	1.918293	ATGGACCTTGGCGTCTGGA	60.918	57.895	6.64	0.00	33.07	3.86
2138	2603	2.040544	GGACAACCAGACGCCATGG	61.041	63.158	7.63	7.63	43.87	3.66
2150	2615	1.134521	TGGCGTCTGGATATGGACAAC	60.135	52.381	0.00	0.00	33.19	3.32
2151	2616	1.138859	CTGGCGTCTGGATATGGACAA	59.861	52.381	0.00	0.00	33.19	3.18
2153	2618	0.034059	CCTGGCGTCTGGATATGGAC	59.966	60.000	7.22	0.00	34.32	4.02
2154	2619	1.121407	CCCTGGCGTCTGGATATGGA	61.121	60.000	15.35	0.00	34.32	3.41
2158	2623	1.760875	GGTCCCTGGCGTCTGGATA	60.761	63.158	15.35	0.00	34.32	2.59
2173	2638	4.021925	AAGCCAGACGCCAGGGTC	62.022	66.667	6.74	6.74	38.78	4.46
2217	2682	1.001746	CATCAGACACACCAGACAGCT	59.998	52.381	0.00	0.00	0.00	4.24
2220	2685	1.344438	GTCCATCAGACACACCAGACA	59.656	52.381	0.00	0.00	45.55	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.