Multiple sequence alignment - TraesCS4A01G425500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G425500 chr4A 100.000 2766 0 0 1 2766 697438303 697441068 0.000000e+00 5108.0
1 TraesCS4A01G425500 chr4A 92.378 984 70 1 999 1982 697432862 697433840 0.000000e+00 1397.0
2 TraesCS4A01G425500 chr4A 94.606 723 28 3 171 893 697432063 697432774 0.000000e+00 1109.0
3 TraesCS4A01G425500 chr4A 78.108 740 107 31 2042 2766 696543914 696543215 4.260000e-113 418.0
4 TraesCS4A01G425500 chr4A 86.772 189 22 1 596 781 696597439 696597251 1.000000e-49 207.0
5 TraesCS4A01G425500 chr4A 84.615 169 12 5 634 788 697499963 697500131 3.690000e-34 156.0
6 TraesCS4A01G425500 chr4A 80.519 154 12 9 758 893 697511588 697511741 4.870000e-18 102.0
7 TraesCS4A01G425500 chr4A 100.000 35 0 0 1002 1036 697439255 697439289 6.390000e-07 65.8
8 TraesCS4A01G425500 chr4A 100.000 35 0 0 953 987 697439304 697439338 6.390000e-07 65.8
9 TraesCS4A01G425500 chr4A 89.583 48 3 2 577 622 697511452 697511499 2.970000e-05 60.2
10 TraesCS4A01G425500 chr7D 87.357 1574 140 23 416 1986 30985093 30983576 0.000000e+00 1749.0
11 TraesCS4A01G425500 chr7D 87.143 1470 126 27 540 1978 31102491 31101054 0.000000e+00 1609.0
12 TraesCS4A01G425500 chr7D 85.573 1116 106 29 1680 2766 31063506 31062417 0.000000e+00 1118.0
13 TraesCS4A01G425500 chr7D 87.445 908 80 10 796 1693 31070988 31070105 0.000000e+00 1014.0
14 TraesCS4A01G425500 chr7D 87.201 836 85 9 985 1818 31099029 31098214 0.000000e+00 931.0
15 TraesCS4A01G425500 chr7D 89.708 651 53 5 1345 1986 31055824 31055179 0.000000e+00 819.0
16 TraesCS4A01G425500 chr7D 86.351 718 75 13 626 1343 31056582 31055888 0.000000e+00 761.0
17 TraesCS4A01G425500 chr7D 85.243 576 69 12 2045 2613 31100623 31100057 1.850000e-161 579.0
18 TraesCS4A01G425500 chr7D 90.210 429 37 2 2343 2766 31054594 31054166 3.110000e-154 555.0
19 TraesCS4A01G425500 chr7D 90.933 386 28 4 414 798 31092654 31092275 1.900000e-141 512.0
20 TraesCS4A01G425500 chr7D 86.087 230 17 5 414 642 31056909 31056694 1.660000e-57 233.0
21 TraesCS4A01G425500 chr7D 80.460 87 14 2 414 497 30981617 30981531 2.300000e-06 63.9
22 TraesCS4A01G425500 chr7A 88.833 994 98 6 1000 1986 31529792 31528805 0.000000e+00 1208.0
23 TraesCS4A01G425500 chr7A 88.833 994 98 6 1000 1986 31548232 31547245 0.000000e+00 1208.0
24 TraesCS4A01G425500 chr7A 88.732 994 99 6 1000 1986 31511990 31511003 0.000000e+00 1203.0
25 TraesCS4A01G425500 chr7A 91.746 315 25 1 2453 2766 31507449 31507135 1.180000e-118 436.0
26 TraesCS4A01G425500 chr7A 91.111 315 27 1 2453 2766 31525252 31524938 2.550000e-115 425.0
27 TraesCS4A01G425500 chr7A 90.794 315 28 1 2453 2766 31543692 31543378 1.180000e-113 420.0
28 TraesCS4A01G425500 chr7A 93.525 278 18 0 1669 1946 31134367 31134090 5.510000e-112 414.0
29 TraesCS4A01G425500 chr7A 77.562 361 67 13 2286 2637 31739578 31739933 3.610000e-49 206.0
30 TraesCS4A01G425500 chr5D 86.911 764 74 11 1220 1983 37207820 37208557 0.000000e+00 833.0
31 TraesCS4A01G425500 chr5D 87.143 280 25 10 2045 2321 37208679 37208950 9.620000e-80 307.0
32 TraesCS4A01G425500 chr5D 91.707 205 16 1 2380 2584 37209175 37209378 1.620000e-72 283.0
33 TraesCS4A01G425500 chr5D 87.293 181 22 1 998 1178 37207187 37207008 3.610000e-49 206.0
34 TraesCS4A01G425500 chr3A 86.785 734 66 21 1031 1764 77594953 77595655 0.000000e+00 789.0
35 TraesCS4A01G425500 chr3A 86.785 734 66 21 1031 1764 77708507 77709209 0.000000e+00 789.0
36 TraesCS4A01G425500 chr3D 85.346 737 83 17 1031 1764 66553409 66554123 0.000000e+00 739.0
37 TraesCS4A01G425500 chr3D 83.147 807 101 24 1031 1834 66561692 66562466 0.000000e+00 704.0
38 TraesCS4A01G425500 chr3D 90.263 380 34 2 38 417 138625338 138624962 6.880000e-136 494.0
39 TraesCS4A01G425500 chr3D 88.410 371 40 2 47 417 598213807 598213440 7.030000e-121 444.0
40 TraesCS4A01G425500 chr7B 92.564 390 25 3 29 415 640250178 640250566 8.650000e-155 556.0
41 TraesCS4A01G425500 chr7B 90.141 426 35 3 1 420 116816413 116815989 5.210000e-152 547.0
42 TraesCS4A01G425500 chr7B 88.180 423 35 10 1 414 31594409 31593993 8.900000e-135 490.0
43 TraesCS4A01G425500 chr4D 91.247 377 31 2 38 414 461499012 461498638 1.900000e-141 512.0
44 TraesCS4A01G425500 chr6D 89.974 389 36 2 26 414 29873366 29873751 1.480000e-137 499.0
45 TraesCS4A01G425500 chr6D 89.418 378 35 2 38 415 423193353 423192981 3.220000e-129 472.0
46 TraesCS4A01G425500 chr6D 89.572 374 30 5 38 408 8186248 8186615 1.500000e-127 466.0
47 TraesCS4A01G425500 chr6D 89.125 377 33 2 38 414 436034206 436033838 1.940000e-126 462.0
48 TraesCS4A01G425500 chr6D 94.595 111 4 1 38 148 457331520 457331412 1.320000e-38 171.0
49 TraesCS4A01G425500 chr6D 100.000 36 0 0 1 36 29873321 29873356 1.780000e-07 67.6
50 TraesCS4A01G425500 chr1D 90.314 382 32 4 38 418 30398749 30398372 1.910000e-136 496.0
51 TraesCS4A01G425500 chr2B 88.193 415 42 5 1 414 3174966 3174558 3.200000e-134 488.0
52 TraesCS4A01G425500 chrUn 73.772 1140 242 44 1304 2419 294213304 294212198 2.000000e-106 396.0
53 TraesCS4A01G425500 chrUn 73.772 1140 242 44 1304 2419 294239793 294238687 2.000000e-106 396.0
54 TraesCS4A01G425500 chrUn 73.772 1140 242 44 1304 2419 320030413 320031519 2.000000e-106 396.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G425500 chr4A 697438303 697441068 2765 False 1746.533333 5108 100.0000 1 2766 3 chr4A.!!$F3 2765
1 TraesCS4A01G425500 chr4A 697432063 697433840 1777 False 1253.000000 1397 93.4920 171 1982 2 chr4A.!!$F2 1811
2 TraesCS4A01G425500 chr4A 696543215 696543914 699 True 418.000000 418 78.1080 2042 2766 1 chr4A.!!$R1 724
3 TraesCS4A01G425500 chr7D 31062417 31063506 1089 True 1118.000000 1118 85.5730 1680 2766 1 chr7D.!!$R1 1086
4 TraesCS4A01G425500 chr7D 31098214 31102491 4277 True 1039.666667 1609 86.5290 540 2613 3 chr7D.!!$R6 2073
5 TraesCS4A01G425500 chr7D 31070105 31070988 883 True 1014.000000 1014 87.4450 796 1693 1 chr7D.!!$R2 897
6 TraesCS4A01G425500 chr7D 30981531 30985093 3562 True 906.450000 1749 83.9085 414 1986 2 chr7D.!!$R4 1572
7 TraesCS4A01G425500 chr7D 31054166 31056909 2743 True 592.000000 819 88.0890 414 2766 4 chr7D.!!$R5 2352
8 TraesCS4A01G425500 chr7A 31507135 31511990 4855 True 819.500000 1203 90.2390 1000 2766 2 chr7A.!!$R2 1766
9 TraesCS4A01G425500 chr7A 31524938 31529792 4854 True 816.500000 1208 89.9720 1000 2766 2 chr7A.!!$R3 1766
10 TraesCS4A01G425500 chr7A 31543378 31548232 4854 True 814.000000 1208 89.8135 1000 2766 2 chr7A.!!$R4 1766
11 TraesCS4A01G425500 chr5D 37207820 37209378 1558 False 474.333333 833 88.5870 1220 2584 3 chr5D.!!$F1 1364
12 TraesCS4A01G425500 chr3A 77594953 77595655 702 False 789.000000 789 86.7850 1031 1764 1 chr3A.!!$F1 733
13 TraesCS4A01G425500 chr3A 77708507 77709209 702 False 789.000000 789 86.7850 1031 1764 1 chr3A.!!$F2 733
14 TraesCS4A01G425500 chr3D 66553409 66554123 714 False 739.000000 739 85.3460 1031 1764 1 chr3D.!!$F1 733
15 TraesCS4A01G425500 chr3D 66561692 66562466 774 False 704.000000 704 83.1470 1031 1834 1 chr3D.!!$F2 803
16 TraesCS4A01G425500 chrUn 294212198 294213304 1106 True 396.000000 396 73.7720 1304 2419 1 chrUn.!!$R1 1115
17 TraesCS4A01G425500 chrUn 294238687 294239793 1106 True 396.000000 396 73.7720 1304 2419 1 chrUn.!!$R2 1115
18 TraesCS4A01G425500 chrUn 320030413 320031519 1106 False 396.000000 396 73.7720 1304 2419 1 chrUn.!!$F1 1115

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 1145 0.037303 CTCACAAGTCCATGGCTGGT 59.963 55.0 6.96 8.63 43.61 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2650 9464 0.854218 TTGGCTGGTTTGTCCCCTAA 59.146 50.0 0.0 0.0 34.77 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.494016 TTTCCTTCATTTTCTTACTAGCTAGC 57.506 34.615 20.91 6.62 0.00 3.42
26 27 6.273825 TCCTTCATTTTCTTACTAGCTAGCG 58.726 40.000 20.91 9.54 0.00 4.26
27 28 6.043411 CCTTCATTTTCTTACTAGCTAGCGT 58.957 40.000 20.91 5.75 0.00 5.07
28 29 6.019479 CCTTCATTTTCTTACTAGCTAGCGTG 60.019 42.308 20.91 10.44 0.00 5.34
29 30 5.962433 TCATTTTCTTACTAGCTAGCGTGT 58.038 37.500 20.91 14.25 0.00 4.49
30 31 6.034591 TCATTTTCTTACTAGCTAGCGTGTC 58.965 40.000 20.91 0.00 0.00 3.67
31 32 5.640189 TTTTCTTACTAGCTAGCGTGTCT 57.360 39.130 20.91 2.54 0.00 3.41
32 33 6.748333 TTTTCTTACTAGCTAGCGTGTCTA 57.252 37.500 20.91 1.51 0.00 2.59
33 34 5.987777 TTCTTACTAGCTAGCGTGTCTAG 57.012 43.478 20.91 11.56 46.01 2.43
34 35 5.021033 TCTTACTAGCTAGCGTGTCTAGT 57.979 43.478 20.91 16.03 45.22 2.57
35 36 5.049167 TCTTACTAGCTAGCGTGTCTAGTC 58.951 45.833 20.91 0.00 45.22 2.59
36 37 3.547054 ACTAGCTAGCGTGTCTAGTCT 57.453 47.619 20.91 0.00 45.22 3.24
37 38 3.199677 ACTAGCTAGCGTGTCTAGTCTG 58.800 50.000 20.91 0.00 45.22 3.51
38 39 2.116827 AGCTAGCGTGTCTAGTCTGT 57.883 50.000 9.55 0.00 45.22 3.41
39 40 3.263489 AGCTAGCGTGTCTAGTCTGTA 57.737 47.619 9.55 0.00 45.22 2.74
40 41 3.199677 AGCTAGCGTGTCTAGTCTGTAG 58.800 50.000 9.55 0.00 45.22 2.74
41 42 2.286536 GCTAGCGTGTCTAGTCTGTAGC 60.287 54.545 0.00 0.00 45.22 3.58
42 43 0.727970 AGCGTGTCTAGTCTGTAGCG 59.272 55.000 0.00 0.00 0.00 4.26
43 44 0.447011 GCGTGTCTAGTCTGTAGCGT 59.553 55.000 0.00 0.00 0.00 5.07
44 45 1.529418 GCGTGTCTAGTCTGTAGCGTC 60.529 57.143 0.00 0.00 0.00 5.19
45 46 1.266940 CGTGTCTAGTCTGTAGCGTCG 60.267 57.143 0.00 0.00 0.00 5.12
46 47 1.998315 GTGTCTAGTCTGTAGCGTCGA 59.002 52.381 0.00 0.00 0.00 4.20
47 48 1.998315 TGTCTAGTCTGTAGCGTCGAC 59.002 52.381 5.18 5.18 0.00 4.20
48 49 1.327156 GTCTAGTCTGTAGCGTCGACC 59.673 57.143 10.58 2.76 0.00 4.79
49 50 1.066645 TCTAGTCTGTAGCGTCGACCA 60.067 52.381 10.58 0.65 0.00 4.02
50 51 1.736126 CTAGTCTGTAGCGTCGACCAA 59.264 52.381 10.58 0.00 0.00 3.67
51 52 0.522180 AGTCTGTAGCGTCGACCAAG 59.478 55.000 10.58 0.00 0.00 3.61
52 53 1.071567 GTCTGTAGCGTCGACCAAGC 61.072 60.000 10.58 7.95 0.00 4.01
53 54 1.080772 CTGTAGCGTCGACCAAGCA 60.081 57.895 10.58 3.81 0.00 3.91
54 55 0.458543 CTGTAGCGTCGACCAAGCAT 60.459 55.000 10.58 1.19 0.00 3.79
55 56 0.735978 TGTAGCGTCGACCAAGCATG 60.736 55.000 10.58 0.00 0.00 4.06
69 70 4.952071 CAAGCATGGAGATAAGAGAGGA 57.048 45.455 0.00 0.00 0.00 3.71
70 71 4.630111 CAAGCATGGAGATAAGAGAGGAC 58.370 47.826 0.00 0.00 0.00 3.85
71 72 3.921104 AGCATGGAGATAAGAGAGGACA 58.079 45.455 0.00 0.00 0.00 4.02
72 73 3.640967 AGCATGGAGATAAGAGAGGACAC 59.359 47.826 0.00 0.00 0.00 3.67
73 74 3.640967 GCATGGAGATAAGAGAGGACACT 59.359 47.826 0.00 0.00 0.00 3.55
74 75 4.100808 GCATGGAGATAAGAGAGGACACTT 59.899 45.833 0.00 0.00 0.00 3.16
75 76 5.738783 GCATGGAGATAAGAGAGGACACTTC 60.739 48.000 0.00 0.00 0.00 3.01
76 77 5.199982 TGGAGATAAGAGAGGACACTTCT 57.800 43.478 0.00 0.00 0.00 2.85
77 78 5.197451 TGGAGATAAGAGAGGACACTTCTC 58.803 45.833 0.00 0.00 0.00 2.87
78 79 5.044476 TGGAGATAAGAGAGGACACTTCTCT 60.044 44.000 7.43 7.43 43.56 3.10
90 91 8.856103 AGAGGACACTTCTCTCTATTAATTAGC 58.144 37.037 0.00 0.00 36.99 3.09
91 92 8.776061 AGGACACTTCTCTCTATTAATTAGCT 57.224 34.615 0.00 0.00 0.00 3.32
92 93 9.869667 AGGACACTTCTCTCTATTAATTAGCTA 57.130 33.333 0.00 0.00 0.00 3.32
94 95 9.620660 GACACTTCTCTCTATTAATTAGCTAGC 57.379 37.037 6.62 6.62 0.00 3.42
95 96 9.362151 ACACTTCTCTCTATTAATTAGCTAGCT 57.638 33.333 23.12 23.12 0.00 3.32
142 143 4.420741 CCCCCAAAACCCCCAAAA 57.579 55.556 0.00 0.00 0.00 2.44
143 144 1.840598 CCCCCAAAACCCCCAAAAC 59.159 57.895 0.00 0.00 0.00 2.43
144 145 1.710996 CCCCCAAAACCCCCAAAACC 61.711 60.000 0.00 0.00 0.00 3.27
145 146 1.710996 CCCCAAAACCCCCAAAACCC 61.711 60.000 0.00 0.00 0.00 4.11
146 147 1.710996 CCCAAAACCCCCAAAACCCC 61.711 60.000 0.00 0.00 0.00 4.95
147 148 1.710996 CCAAAACCCCCAAAACCCCC 61.711 60.000 0.00 0.00 0.00 5.40
191 192 0.324091 CCCCAGCTCCTGAAATGCTT 60.324 55.000 0.00 0.00 34.51 3.91
193 194 2.019984 CCCAGCTCCTGAAATGCTTAC 58.980 52.381 0.00 0.00 34.51 2.34
194 195 2.618816 CCCAGCTCCTGAAATGCTTACA 60.619 50.000 0.00 0.00 34.51 2.41
195 196 3.285484 CCAGCTCCTGAAATGCTTACAT 58.715 45.455 0.00 0.00 33.47 2.29
211 212 4.464008 CTTACATGTGGATGCCTATTGGT 58.536 43.478 9.11 0.00 32.14 3.67
213 214 2.233271 CATGTGGATGCCTATTGGTCC 58.767 52.381 0.00 0.00 35.27 4.46
214 215 0.550914 TGTGGATGCCTATTGGTCCC 59.449 55.000 1.28 0.00 35.27 4.46
215 216 0.535102 GTGGATGCCTATTGGTCCCG 60.535 60.000 1.28 0.00 35.27 5.14
216 217 1.073199 GGATGCCTATTGGTCCCGG 59.927 63.158 0.00 0.00 35.27 5.73
217 218 1.705997 GGATGCCTATTGGTCCCGGT 61.706 60.000 0.00 0.00 35.27 5.28
218 219 0.182775 GATGCCTATTGGTCCCGGTT 59.817 55.000 0.00 0.00 35.27 4.44
219 220 0.106719 ATGCCTATTGGTCCCGGTTG 60.107 55.000 0.00 0.00 35.27 3.77
220 221 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
221 222 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
222 223 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
350 351 6.239120 GGCATTAGTAACGACCTATTAGTCCA 60.239 42.308 0.00 0.00 32.91 4.02
375 376 0.327259 AAGAACCGGGACTAAAGGGC 59.673 55.000 6.32 0.00 0.00 5.19
552 554 2.509336 GCGCGCAGACTACCACAT 60.509 61.111 29.10 0.00 0.00 3.21
690 823 1.908299 GTGGTTGCCCCCTTTCCAG 60.908 63.158 0.00 0.00 0.00 3.86
794 946 7.676947 AGGGCATGAAACGTATATAATACACT 58.323 34.615 0.00 0.00 0.00 3.55
826 978 2.080693 TGCACGTCAAACAACTGAACT 58.919 42.857 0.00 0.00 0.00 3.01
867 1019 6.615726 AGCAAGTCCTATTTAACCTCTCCATA 59.384 38.462 0.00 0.00 0.00 2.74
893 1045 5.721480 TCTCCCACATTCATCTGAACTAAGA 59.279 40.000 0.00 0.00 36.80 2.10
902 1062 4.637534 TCATCTGAACTAAGATTGCTTGCC 59.362 41.667 0.00 0.00 34.60 4.52
905 1065 2.483877 TGAACTAAGATTGCTTGCCACG 59.516 45.455 0.00 0.00 35.56 4.94
944 1110 5.535030 TCATTGTCGACATATACCTGCTAGT 59.465 40.000 20.80 0.00 0.00 2.57
945 1111 5.434352 TTGTCGACATATACCTGCTAGTC 57.566 43.478 20.80 0.00 0.00 2.59
946 1112 3.819337 TGTCGACATATACCTGCTAGTCC 59.181 47.826 15.76 0.00 0.00 3.85
947 1113 3.819337 GTCGACATATACCTGCTAGTCCA 59.181 47.826 11.55 0.00 0.00 4.02
948 1114 4.459685 GTCGACATATACCTGCTAGTCCAT 59.540 45.833 11.55 0.00 0.00 3.41
949 1115 4.459337 TCGACATATACCTGCTAGTCCATG 59.541 45.833 0.00 0.00 0.00 3.66
950 1116 4.380973 CGACATATACCTGCTAGTCCATGG 60.381 50.000 4.97 4.97 0.00 3.66
952 1118 2.109229 ATACCTGCTAGTCCATGGCT 57.891 50.000 6.96 10.38 36.12 4.75
953 1119 1.123077 TACCTGCTAGTCCATGGCTG 58.877 55.000 6.96 0.00 36.12 4.85
954 1120 1.147824 CCTGCTAGTCCATGGCTGG 59.852 63.158 6.96 10.81 45.66 4.85
955 1121 1.525535 CTGCTAGTCCATGGCTGGC 60.526 63.158 26.45 26.45 42.80 4.85
956 1122 2.203266 GCTAGTCCATGGCTGGCC 60.203 66.667 24.30 4.43 42.80 5.36
959 1125 1.003442 TAGTCCATGGCTGGCCTCT 59.997 57.895 6.96 6.23 42.80 3.69
960 1126 1.050988 TAGTCCATGGCTGGCCTCTC 61.051 60.000 6.96 0.00 42.80 3.20
961 1127 2.041762 TCCATGGCTGGCCTCTCT 59.958 61.111 6.96 0.00 42.80 3.10
962 1128 2.068821 TCCATGGCTGGCCTCTCTC 61.069 63.158 6.96 0.00 42.80 3.20
963 1129 2.372890 CCATGGCTGGCCTCTCTCA 61.373 63.158 13.05 0.00 35.23 3.27
964 1130 1.153208 CATGGCTGGCCTCTCTCAC 60.153 63.158 13.05 0.00 36.94 3.51
965 1131 1.614525 ATGGCTGGCCTCTCTCACA 60.615 57.895 13.05 0.00 36.94 3.58
966 1132 1.203441 ATGGCTGGCCTCTCTCACAA 61.203 55.000 13.05 0.00 36.94 3.33
967 1133 1.078567 GGCTGGCCTCTCTCACAAG 60.079 63.158 3.32 0.00 0.00 3.16
968 1134 1.676384 GCTGGCCTCTCTCACAAGT 59.324 57.895 3.32 0.00 0.00 3.16
969 1135 0.390998 GCTGGCCTCTCTCACAAGTC 60.391 60.000 3.32 0.00 0.00 3.01
970 1136 0.248843 CTGGCCTCTCTCACAAGTCC 59.751 60.000 3.32 0.00 0.00 3.85
971 1137 0.471780 TGGCCTCTCTCACAAGTCCA 60.472 55.000 3.32 0.00 0.00 4.02
972 1138 0.908198 GGCCTCTCTCACAAGTCCAT 59.092 55.000 0.00 0.00 0.00 3.41
973 1139 1.406614 GGCCTCTCTCACAAGTCCATG 60.407 57.143 0.00 0.00 0.00 3.66
974 1140 1.406614 GCCTCTCTCACAAGTCCATGG 60.407 57.143 4.97 4.97 0.00 3.66
975 1141 1.406614 CCTCTCTCACAAGTCCATGGC 60.407 57.143 6.96 2.00 0.00 4.40
976 1142 1.554160 CTCTCTCACAAGTCCATGGCT 59.446 52.381 6.96 4.72 0.00 4.75
977 1143 1.277273 TCTCTCACAAGTCCATGGCTG 59.723 52.381 6.96 6.82 0.00 4.85
978 1144 0.325933 TCTCACAAGTCCATGGCTGG 59.674 55.000 6.96 7.94 44.64 4.85
979 1145 0.037303 CTCACAAGTCCATGGCTGGT 59.963 55.000 6.96 8.63 43.61 4.00
980 1146 0.478072 TCACAAGTCCATGGCTGGTT 59.522 50.000 6.96 0.00 43.61 3.67
983 1149 1.145738 ACAAGTCCATGGCTGGTTCTT 59.854 47.619 6.96 2.00 43.61 2.52
989 1170 1.081892 CATGGCTGGTTCTTCTCACG 58.918 55.000 0.00 0.00 0.00 4.35
1026 1211 1.277273 TCTCTCACAAGTCCATGGCTG 59.723 52.381 6.96 6.82 0.00 4.85
1218 1403 1.671054 CTGGGTGCACCGAAACGAT 60.671 57.895 29.08 0.00 44.64 3.73
1242 1427 1.826054 CTTCAACACCGCCACCCAA 60.826 57.895 0.00 0.00 0.00 4.12
1258 1443 1.377229 CAAACCAACCCCCGCTCTA 59.623 57.895 0.00 0.00 0.00 2.43
1260 1445 0.702316 AAACCAACCCCCGCTCTAAT 59.298 50.000 0.00 0.00 0.00 1.73
1343 1599 1.171549 ATGCATGGCGTCACACACAA 61.172 50.000 0.00 0.00 0.00 3.33
1693 1961 3.836562 ACTACTTCAAGTTCGGGGTGTAT 59.163 43.478 0.00 0.00 0.00 2.29
1779 2047 1.077212 ACTGAGTGGATGCATGGGC 60.077 57.895 2.46 0.00 41.68 5.36
1917 2197 5.077564 TGTAGTGTGAGTCATACTTGGAGT 58.922 41.667 25.16 5.30 37.10 3.85
1944 2224 4.641989 AGCTGTGACAATGCCCTTATTAAG 59.358 41.667 0.00 0.00 0.00 1.85
1945 2225 4.640201 GCTGTGACAATGCCCTTATTAAGA 59.360 41.667 4.96 0.00 0.00 2.10
1946 2226 5.449177 GCTGTGACAATGCCCTTATTAAGAC 60.449 44.000 4.96 0.00 0.00 3.01
1947 2227 4.634004 TGTGACAATGCCCTTATTAAGACG 59.366 41.667 4.96 0.00 0.00 4.18
1948 2228 4.035208 GTGACAATGCCCTTATTAAGACGG 59.965 45.833 4.96 0.28 0.00 4.79
1983 2264 5.134202 TCTTGTGATGTGAGATACAACGT 57.866 39.130 0.00 0.00 43.77 3.99
1986 2267 4.242475 TGTGATGTGAGATACAACGTTCC 58.758 43.478 0.00 0.00 43.77 3.62
1987 2268 3.617263 GTGATGTGAGATACAACGTTCCC 59.383 47.826 0.00 0.00 43.77 3.97
1988 2269 2.357327 TGTGAGATACAACGTTCCCG 57.643 50.000 0.00 0.00 36.06 5.14
1992 2301 0.533951 AGATACAACGTTCCCGGTCC 59.466 55.000 0.00 0.00 38.78 4.46
2102 2885 3.562250 CCATACCATGGGCCGAGA 58.438 61.111 18.09 0.00 46.86 4.04
2103 2886 2.069776 CCATACCATGGGCCGAGAT 58.930 57.895 18.09 0.00 46.86 2.75
2119 2902 4.691216 GCCGAGATAATTGGGAGTTGATAC 59.309 45.833 0.00 0.00 32.21 2.24
2131 2914 0.928229 GTTGATACGTTGCCTAGCCG 59.072 55.000 0.00 0.00 0.00 5.52
2155 2940 6.440965 CGATAGAGAGGGGAATTTAAGGGTAT 59.559 42.308 0.00 0.00 39.76 2.73
2230 3015 7.247929 TCTTACTACTGATCGCGGATATATG 57.752 40.000 6.13 0.00 0.00 1.78
2236 3021 3.833442 TGATCGCGGATATATGTGTGTC 58.167 45.455 6.13 0.00 0.00 3.67
2237 3022 3.254657 TGATCGCGGATATATGTGTGTCA 59.745 43.478 6.13 0.00 0.00 3.58
2371 3237 2.628657 AGTCAGATTAGGTGCCGGTATC 59.371 50.000 1.90 0.00 0.00 2.24
2389 3352 5.571741 CGGTATCGACATATATTCGCTTGTT 59.428 40.000 0.00 0.81 39.00 2.83
2515 9194 5.715439 ATCCATCTATTGTTTCCTGGTCA 57.285 39.130 0.00 0.00 0.00 4.02
2525 9204 9.703892 CTATTGTTTCCTGGTCATCTATCTTAG 57.296 37.037 0.00 0.00 0.00 2.18
2557 9236 6.252995 ACTTAGCTCTCTATCTTAGGGATGG 58.747 44.000 0.00 0.00 34.14 3.51
2588 9267 8.734386 AGCTAGATGCAAATTGCTATATAAACC 58.266 33.333 19.34 4.90 45.31 3.27
2613 9297 6.854892 CAGACAATTTTGTAGCTTTCACTCAG 59.145 38.462 0.00 0.00 42.43 3.35
2646 9459 4.021456 TGTCATGCTAACCACCCTATATCG 60.021 45.833 0.00 0.00 0.00 2.92
2650 9464 5.362105 TGCTAACCACCCTATATCGTTTT 57.638 39.130 0.00 0.00 0.00 2.43
2668 9482 0.854218 TTTAGGGGACAAACCAGCCA 59.146 50.000 0.00 0.00 41.20 4.75
2718 10215 5.421693 ACTTTTATGGTTAGCATGATGGCAA 59.578 36.000 7.20 0.00 35.83 4.52
2737 10234 3.259123 GCAATGAAAGTCCCCATGTTCTT 59.741 43.478 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.757010 CGCTAGCTAGTAAGAAAATGAAGGAA 59.243 38.462 21.62 0.00 0.00 3.36
2 3 6.127423 ACGCTAGCTAGTAAGAAAATGAAGGA 60.127 38.462 21.62 0.00 0.00 3.36
5 6 6.395629 ACACGCTAGCTAGTAAGAAAATGAA 58.604 36.000 21.62 0.00 0.00 2.57
6 7 5.962433 ACACGCTAGCTAGTAAGAAAATGA 58.038 37.500 21.62 0.00 0.00 2.57
7 8 6.037098 AGACACGCTAGCTAGTAAGAAAATG 58.963 40.000 21.62 10.66 0.00 2.32
8 9 6.210287 AGACACGCTAGCTAGTAAGAAAAT 57.790 37.500 21.62 0.54 0.00 1.82
9 10 5.640189 AGACACGCTAGCTAGTAAGAAAA 57.360 39.130 21.62 0.00 0.00 2.29
10 11 6.360844 CTAGACACGCTAGCTAGTAAGAAA 57.639 41.667 21.62 2.68 40.15 2.52
11 12 5.987777 CTAGACACGCTAGCTAGTAAGAA 57.012 43.478 21.62 2.10 40.15 2.52
22 23 1.931841 CGCTACAGACTAGACACGCTA 59.068 52.381 0.00 0.00 0.00 4.26
23 24 0.727970 CGCTACAGACTAGACACGCT 59.272 55.000 0.00 0.00 0.00 5.07
24 25 0.447011 ACGCTACAGACTAGACACGC 59.553 55.000 0.00 0.00 0.00 5.34
25 26 1.266940 CGACGCTACAGACTAGACACG 60.267 57.143 0.00 0.00 0.00 4.49
26 27 1.998315 TCGACGCTACAGACTAGACAC 59.002 52.381 0.00 0.00 0.00 3.67
27 28 1.998315 GTCGACGCTACAGACTAGACA 59.002 52.381 0.00 0.00 32.58 3.41
28 29 1.327156 GGTCGACGCTACAGACTAGAC 59.673 57.143 9.92 0.00 35.42 2.59
29 30 1.066645 TGGTCGACGCTACAGACTAGA 60.067 52.381 9.92 0.00 35.42 2.43
30 31 1.366679 TGGTCGACGCTACAGACTAG 58.633 55.000 9.92 0.00 35.42 2.57
31 32 1.736126 CTTGGTCGACGCTACAGACTA 59.264 52.381 9.92 0.00 35.42 2.59
32 33 0.522180 CTTGGTCGACGCTACAGACT 59.478 55.000 9.92 0.00 35.42 3.24
33 34 1.071567 GCTTGGTCGACGCTACAGAC 61.072 60.000 9.92 0.00 0.00 3.51
34 35 1.211969 GCTTGGTCGACGCTACAGA 59.788 57.895 9.92 0.00 0.00 3.41
35 36 0.458543 ATGCTTGGTCGACGCTACAG 60.459 55.000 9.92 1.83 0.00 2.74
36 37 0.735978 CATGCTTGGTCGACGCTACA 60.736 55.000 9.92 5.96 0.00 2.74
37 38 1.421410 CCATGCTTGGTCGACGCTAC 61.421 60.000 9.92 0.00 38.30 3.58
38 39 1.153647 CCATGCTTGGTCGACGCTA 60.154 57.895 9.92 0.00 38.30 4.26
39 40 2.434884 CCATGCTTGGTCGACGCT 60.435 61.111 9.92 0.00 38.30 5.07
40 41 2.434185 TCCATGCTTGGTCGACGC 60.434 61.111 17.54 8.25 44.06 5.19
41 42 0.179100 ATCTCCATGCTTGGTCGACG 60.179 55.000 17.54 0.00 44.06 5.12
42 43 2.890808 TATCTCCATGCTTGGTCGAC 57.109 50.000 17.54 7.13 44.06 4.20
43 44 3.031013 TCTTATCTCCATGCTTGGTCGA 58.969 45.455 17.54 14.91 44.06 4.20
44 45 3.068732 TCTCTTATCTCCATGCTTGGTCG 59.931 47.826 17.54 10.57 44.06 4.79
45 46 4.502950 CCTCTCTTATCTCCATGCTTGGTC 60.503 50.000 17.54 0.00 44.06 4.02
46 47 3.390639 CCTCTCTTATCTCCATGCTTGGT 59.609 47.826 17.54 2.25 44.06 3.67
47 48 3.645212 TCCTCTCTTATCTCCATGCTTGG 59.355 47.826 12.41 12.41 45.15 3.61
48 49 4.100653 TGTCCTCTCTTATCTCCATGCTTG 59.899 45.833 0.00 0.00 0.00 4.01
49 50 4.100808 GTGTCCTCTCTTATCTCCATGCTT 59.899 45.833 0.00 0.00 0.00 3.91
50 51 3.640967 GTGTCCTCTCTTATCTCCATGCT 59.359 47.826 0.00 0.00 0.00 3.79
51 52 3.640967 AGTGTCCTCTCTTATCTCCATGC 59.359 47.826 0.00 0.00 0.00 4.06
52 53 5.598005 AGAAGTGTCCTCTCTTATCTCCATG 59.402 44.000 0.00 0.00 0.00 3.66
53 54 5.776358 AGAAGTGTCCTCTCTTATCTCCAT 58.224 41.667 0.00 0.00 0.00 3.41
54 55 5.044476 AGAGAAGTGTCCTCTCTTATCTCCA 60.044 44.000 0.00 0.00 39.76 3.86
55 56 5.445964 AGAGAAGTGTCCTCTCTTATCTCC 58.554 45.833 0.00 0.00 39.76 3.71
64 65 8.856103 GCTAATTAATAGAGAGAAGTGTCCTCT 58.144 37.037 0.00 0.00 43.16 3.69
65 66 8.856103 AGCTAATTAATAGAGAGAAGTGTCCTC 58.144 37.037 0.00 0.00 33.04 3.71
66 67 8.776061 AGCTAATTAATAGAGAGAAGTGTCCT 57.224 34.615 0.00 0.00 33.04 3.85
68 69 9.620660 GCTAGCTAATTAATAGAGAGAAGTGTC 57.379 37.037 7.70 0.00 33.04 3.67
69 70 9.362151 AGCTAGCTAATTAATAGAGAGAAGTGT 57.638 33.333 17.69 0.00 33.04 3.55
125 126 1.710996 GGTTTTGGGGGTTTTGGGGG 61.711 60.000 0.00 0.00 0.00 5.40
126 127 1.710996 GGGTTTTGGGGGTTTTGGGG 61.711 60.000 0.00 0.00 0.00 4.96
127 128 1.710996 GGGGTTTTGGGGGTTTTGGG 61.711 60.000 0.00 0.00 0.00 4.12
128 129 1.710996 GGGGGTTTTGGGGGTTTTGG 61.711 60.000 0.00 0.00 0.00 3.28
129 130 1.840598 GGGGGTTTTGGGGGTTTTG 59.159 57.895 0.00 0.00 0.00 2.44
130 131 4.422664 GGGGGTTTTGGGGGTTTT 57.577 55.556 0.00 0.00 0.00 2.43
161 162 2.843730 AGGAGCTGGGGTTTTTGTTTTT 59.156 40.909 0.00 0.00 0.00 1.94
162 163 2.170397 CAGGAGCTGGGGTTTTTGTTTT 59.830 45.455 0.00 0.00 0.00 2.43
163 164 1.762370 CAGGAGCTGGGGTTTTTGTTT 59.238 47.619 0.00 0.00 0.00 2.83
164 165 1.063266 TCAGGAGCTGGGGTTTTTGTT 60.063 47.619 0.00 0.00 31.51 2.83
165 166 0.555769 TCAGGAGCTGGGGTTTTTGT 59.444 50.000 0.00 0.00 31.51 2.83
166 167 1.703411 TTCAGGAGCTGGGGTTTTTG 58.297 50.000 0.00 0.00 31.51 2.44
167 168 2.470057 TTTCAGGAGCTGGGGTTTTT 57.530 45.000 0.00 0.00 31.51 1.94
168 169 2.250924 CATTTCAGGAGCTGGGGTTTT 58.749 47.619 0.00 0.00 31.51 2.43
169 170 1.928868 CATTTCAGGAGCTGGGGTTT 58.071 50.000 0.00 0.00 31.51 3.27
175 176 3.693085 ACATGTAAGCATTTCAGGAGCTG 59.307 43.478 0.00 0.00 38.86 4.24
177 178 3.181493 CCACATGTAAGCATTTCAGGAGC 60.181 47.826 0.00 0.00 31.54 4.70
191 192 3.181445 GGACCAATAGGCATCCACATGTA 60.181 47.826 0.00 0.00 39.06 2.29
193 194 2.233271 GGACCAATAGGCATCCACATG 58.767 52.381 0.00 0.00 39.06 3.21
194 195 1.145738 GGGACCAATAGGCATCCACAT 59.854 52.381 0.00 0.00 39.06 3.21
195 196 0.550914 GGGACCAATAGGCATCCACA 59.449 55.000 0.00 0.00 39.06 4.17
219 220 1.002502 GGTCCCAGTTGGTAGCACC 60.003 63.158 0.00 0.00 39.22 5.01
220 221 0.109723 TTGGTCCCAGTTGGTAGCAC 59.890 55.000 0.00 0.00 34.77 4.40
221 222 0.847373 TTTGGTCCCAGTTGGTAGCA 59.153 50.000 0.00 0.00 34.77 3.49
222 223 1.886542 CTTTTGGTCCCAGTTGGTAGC 59.113 52.381 0.00 0.00 34.77 3.58
350 351 1.640917 TAGTCCCGGTTCTTGAAGCT 58.359 50.000 0.00 0.00 0.00 3.74
375 376 0.038343 TTTCGTCCCGGTTCGTAAGG 60.038 55.000 13.60 0.00 38.47 2.69
552 554 6.007485 TGTTGGGCCAATATATTGTGACTA 57.993 37.500 23.95 11.77 36.06 2.59
683 816 4.697514 TCAGAGAACACAAGTCTGGAAAG 58.302 43.478 0.00 0.00 38.61 2.62
690 823 8.484641 TTGATATTCATCAGAGAACACAAGTC 57.515 34.615 0.00 0.00 42.11 3.01
826 978 2.668212 CTGGGTTTGGCGCTCGAA 60.668 61.111 7.64 0.29 0.00 3.71
867 1019 5.447778 AGTTCAGATGAATGTGGGAGAAT 57.552 39.130 0.00 0.00 36.33 2.40
902 1062 4.668576 ATGAGTTTGTAACTGATGCGTG 57.331 40.909 0.00 0.00 43.03 5.34
927 1087 4.380973 CCATGGACTAGCAGGTATATGTCG 60.381 50.000 5.56 0.00 0.00 4.35
946 1112 1.153208 GTGAGAGAGGCCAGCCATG 60.153 63.158 12.03 0.00 38.92 3.66
947 1113 1.203441 TTGTGAGAGAGGCCAGCCAT 61.203 55.000 12.03 0.00 38.92 4.40
948 1114 1.834856 CTTGTGAGAGAGGCCAGCCA 61.835 60.000 12.03 0.00 38.92 4.75
949 1115 1.078567 CTTGTGAGAGAGGCCAGCC 60.079 63.158 5.01 0.00 0.00 4.85
950 1116 0.390998 GACTTGTGAGAGAGGCCAGC 60.391 60.000 5.01 0.00 0.00 4.85
952 1118 2.366469 GGACTTGTGAGAGAGGCCA 58.634 57.895 5.01 0.00 40.98 5.36
953 1119 0.908198 ATGGACTTGTGAGAGAGGCC 59.092 55.000 0.00 0.00 41.72 5.19
954 1120 1.406614 CCATGGACTTGTGAGAGAGGC 60.407 57.143 5.56 0.00 0.00 4.70
955 1121 1.406614 GCCATGGACTTGTGAGAGAGG 60.407 57.143 18.40 0.00 0.00 3.69
956 1122 1.554160 AGCCATGGACTTGTGAGAGAG 59.446 52.381 18.40 0.00 0.00 3.20
959 1125 3.942351 CAGCCATGGACTTGTGAGA 57.058 52.632 18.40 0.00 0.00 3.27
970 1136 1.081892 CGTGAGAAGAACCAGCCATG 58.918 55.000 0.00 0.00 0.00 3.66
971 1137 0.687354 ACGTGAGAAGAACCAGCCAT 59.313 50.000 0.00 0.00 0.00 4.40
972 1138 1.000506 GTACGTGAGAAGAACCAGCCA 59.999 52.381 0.00 0.00 0.00 4.75
973 1139 1.272769 AGTACGTGAGAAGAACCAGCC 59.727 52.381 0.00 0.00 0.00 4.85
974 1140 2.288273 ACAGTACGTGAGAAGAACCAGC 60.288 50.000 0.00 0.00 0.00 4.85
975 1141 3.644884 ACAGTACGTGAGAAGAACCAG 57.355 47.619 0.00 0.00 0.00 4.00
976 1142 5.717078 ATTACAGTACGTGAGAAGAACCA 57.283 39.130 0.00 0.00 0.00 3.67
977 1143 7.222224 CCATTATTACAGTACGTGAGAAGAACC 59.778 40.741 0.00 0.00 0.00 3.62
978 1144 7.254017 GCCATTATTACAGTACGTGAGAAGAAC 60.254 40.741 0.00 0.00 0.00 3.01
979 1145 6.755141 GCCATTATTACAGTACGTGAGAAGAA 59.245 38.462 0.00 0.00 0.00 2.52
980 1146 6.270815 GCCATTATTACAGTACGTGAGAAGA 58.729 40.000 0.00 0.00 0.00 2.87
983 1149 4.647853 AGGCCATTATTACAGTACGTGAGA 59.352 41.667 5.01 0.00 0.00 3.27
989 1170 6.183360 TGTGAGAGAGGCCATTATTACAGTAC 60.183 42.308 5.01 0.00 0.00 2.73
1026 1211 1.026718 CCATGGCCACGAGAAGAACC 61.027 60.000 8.16 0.00 0.00 3.62
1092 1277 2.203788 ACCCTCTCGAACCCTGCA 60.204 61.111 0.00 0.00 0.00 4.41
1095 1280 1.305381 CTCCACCCTCTCGAACCCT 60.305 63.158 0.00 0.00 0.00 4.34
1218 1403 1.302993 GGCGGTGTTGAAGGGCTTA 60.303 57.895 0.00 0.00 0.00 3.09
1242 1427 0.034477 CATTAGAGCGGGGGTTGGTT 60.034 55.000 0.00 0.00 0.00 3.67
1258 1443 2.871096 TTTACCCGGAGCTTGACATT 57.129 45.000 0.73 0.00 0.00 2.71
1260 1445 2.568062 TGTATTTACCCGGAGCTTGACA 59.432 45.455 0.73 0.00 0.00 3.58
1693 1961 1.079197 CTGGTCGTGGTGCTGCATA 60.079 57.895 5.27 0.00 0.00 3.14
1779 2047 2.653890 GCAATACCAATACGCATGCTG 58.346 47.619 17.13 11.87 0.00 4.41
1889 2165 6.350528 CCAAGTATGACTCACACTACAGACAT 60.351 42.308 0.00 0.00 0.00 3.06
1894 2170 5.077564 ACTCCAAGTATGACTCACACTACA 58.922 41.667 0.00 0.00 0.00 2.74
1917 2197 1.630369 AGGGCATTGTCACAGCTAGAA 59.370 47.619 0.00 0.00 0.00 2.10
1944 2224 5.584649 TCACAAGAAATGTTCATATCCCGTC 59.415 40.000 0.00 0.00 41.46 4.79
1945 2225 5.496556 TCACAAGAAATGTTCATATCCCGT 58.503 37.500 0.00 0.00 41.46 5.28
1946 2226 6.038603 ACATCACAAGAAATGTTCATATCCCG 59.961 38.462 0.00 0.00 41.46 5.14
1947 2227 7.067372 TCACATCACAAGAAATGTTCATATCCC 59.933 37.037 0.00 0.00 41.46 3.85
1948 2228 7.988737 TCACATCACAAGAAATGTTCATATCC 58.011 34.615 0.00 0.00 41.46 2.59
1986 2267 0.908180 AGTGGTTCCCTTAGGACCGG 60.908 60.000 0.00 0.00 43.90 5.28
1987 2268 1.755380 CTAGTGGTTCCCTTAGGACCG 59.245 57.143 0.00 0.00 43.90 4.79
1988 2269 2.765135 GTCTAGTGGTTCCCTTAGGACC 59.235 54.545 0.00 0.23 43.90 4.46
1992 2301 2.500504 GGTGGTCTAGTGGTTCCCTTAG 59.499 54.545 0.00 0.00 0.00 2.18
1998 2307 2.104281 ACTTGTGGTGGTCTAGTGGTTC 59.896 50.000 0.00 0.00 0.00 3.62
2048 2831 7.389330 CGACATACTCAGACCATAGTAGAGATT 59.611 40.741 0.00 0.00 34.15 2.40
2058 2841 1.757118 CCCACGACATACTCAGACCAT 59.243 52.381 0.00 0.00 0.00 3.55
2101 2884 5.277828 GGCAACGTATCAACTCCCAATTATC 60.278 44.000 0.00 0.00 0.00 1.75
2102 2885 4.578928 GGCAACGTATCAACTCCCAATTAT 59.421 41.667 0.00 0.00 0.00 1.28
2103 2886 3.942748 GGCAACGTATCAACTCCCAATTA 59.057 43.478 0.00 0.00 0.00 1.40
2119 2902 0.952280 TCTCTATCGGCTAGGCAACG 59.048 55.000 17.45 0.00 46.39 4.10
2131 2914 7.816300 ATACCCTTAAATTCCCCTCTCTATC 57.184 40.000 0.00 0.00 0.00 2.08
2196 2981 6.362016 GCGATCAGTAGTAAGATCTTGATGTG 59.638 42.308 18.47 8.86 38.75 3.21
2209 2994 5.878669 ACACATATATCCGCGATCAGTAGTA 59.121 40.000 8.23 0.00 0.00 1.82
2237 3022 7.148018 GGATTTGGATGTCATGTCTTACAACAT 60.148 37.037 3.50 0.00 40.49 2.71
2336 3198 8.424918 ACCTAATCTGACTGTATAATTCACCTG 58.575 37.037 0.00 0.00 0.00 4.00
2588 9267 6.728200 TGAGTGAAAGCTACAAAATTGTCTG 58.272 36.000 1.37 0.00 42.35 3.51
2613 9297 6.258160 GTGGTTAGCATGACAATGTATTGAC 58.742 40.000 11.29 5.94 40.14 3.18
2646 9459 2.036733 GGCTGGTTTGTCCCCTAAAAAC 59.963 50.000 0.00 0.00 34.77 2.43
2650 9464 0.854218 TTGGCTGGTTTGTCCCCTAA 59.146 50.000 0.00 0.00 34.77 2.69
2718 10215 4.082125 GACAAGAACATGGGGACTTTCAT 58.918 43.478 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.