AutoCloner

Multiple sequence alignment - TraesCS4A01G424800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G424800	chr4A	100.000	2947	0	0	1	2947	695996718	695999664	0.000000e+00	5443.0
1	TraesCS4A01G424800	chr4A	99.001	901	9	0	1	901	319847767	319846867	0.000000e+00	1615.0
2	TraesCS4A01G424800	chr4A	100.000	63	0	0	3179	3241	695999896	695999958	2.040000e-22	117.0
3	TraesCS4A01G424800	chr7D	94.207	1519	69	9	958	2466	31956805	31955296	0.000000e+00	2300.0
4	TraesCS4A01G424800	chr7D	92.693	479	22	6	2459	2931	31955148	31954677	0.000000e+00	678.0
5	TraesCS4A01G424800	chr7D	95.238	63	3	0	3179	3241	31954451	31954389	2.060000e-17	100.0
6	TraesCS4A01G424800	chr7D	91.803	61	4	1	2787	2847	632828817	632828758	2.070000e-12	84.2
7	TraesCS4A01G424800	chr7A	99.334	901	6	0	1	901	9477506	9478406	0.000000e+00	1631.0
8	TraesCS4A01G424800	chr7A	87.630	1439	101	37	1551	2931	32032639	32031220	0.000000e+00	1600.0
9	TraesCS4A01G424800	chr7A	94.306	562	15	8	958	1519	32033183	32032639	0.000000e+00	845.0
10	TraesCS4A01G424800	chr7A	92.531	241	16	1	958	1198	32290985	32290747	8.610000e-91	344.0
11	TraesCS4A01G424800	chr3B	98.780	902	10	1	1	902	46486635	46487535	0.000000e+00	1604.0
12	TraesCS4A01G424800	chr3B	82.400	125	16	6	958	1080	564245643	564245523	1.590000e-18	104.0
13	TraesCS4A01G424800	chr5B	98.673	904	10	2	1	904	487470105	487471006	0.000000e+00	1602.0
14	TraesCS4A01G424800	chr5B	96.000	50	2	0	903	952	599691974	599691925	7.450000e-12	82.4
15	TraesCS4A01G424800	chr5B	90.000	50	5	0	903	952	580488012	580487963	7.510000e-07	65.8
16	TraesCS4A01G424800	chr6B	98.559	902	13	0	1	902	688862606	688861705	0.000000e+00	1594.0
17	TraesCS4A01G424800	chr6B	98.879	892	9	1	1	892	566797212	566798102	0.000000e+00	1591.0
18	TraesCS4A01G424800	chr1B	98.767	892	11	0	1	892	55460015	55459124	0.000000e+00	1587.0
19	TraesCS4A01G424800	chr2A	98.656	893	11	1	1	892	431005672	431004780	0.000000e+00	1581.0
20	TraesCS4A01G424800	chr2A	98.656	893	11	1	1	892	431012307	431011415	0.000000e+00	1581.0
21	TraesCS4A01G424800	chr3D	82.400	125	16	5	958	1080	432027928	432027808	1.590000e-18	104.0
22	TraesCS4A01G424800	chr2B	98.000	50	1	0	903	952	564556235	564556284	1.600000e-13	87.9
23	TraesCS4A01G424800	chr4D	86.275	51	7	0	902	952	108858456	108858406	4.520000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G424800	chr4A	695996718	695999958	3240	False	2780.0	5443	100.000	1	3241	2	chr4A.!!$F1	3240
1	TraesCS4A01G424800	chr4A	319846867	319847767	900	True	1615.0	1615	99.001	1	901	1	chr4A.!!$R1	900
2	TraesCS4A01G424800	chr7D	31954389	31956805	2416	True	1026.0	2300	94.046	958	3241	3	chr7D.!!$R2	2283
3	TraesCS4A01G424800	chr7A	9477506	9478406	900	False	1631.0	1631	99.334	1	901	1	chr7A.!!$F1	900
4	TraesCS4A01G424800	chr7A	32031220	32033183	1963	True	1222.5	1600	90.968	958	2931	2	chr7A.!!$R2	1973
5	TraesCS4A01G424800	chr3B	46486635	46487535	900	False	1604.0	1604	98.780	1	902	1	chr3B.!!$F1	901
6	TraesCS4A01G424800	chr5B	487470105	487471006	901	False	1602.0	1602	98.673	1	904	1	chr5B.!!$F1	903
7	TraesCS4A01G424800	chr6B	688861705	688862606	901	True	1594.0	1594	98.559	1	902	1	chr6B.!!$R1	901
8	TraesCS4A01G424800	chr6B	566797212	566798102	890	False	1591.0	1591	98.879	1	892	1	chr6B.!!$F1	891
9	TraesCS4A01G424800	chr1B	55459124	55460015	891	True	1587.0	1587	98.767	1	892	1	chr1B.!!$R1	891
10	TraesCS4A01G424800	chr2A	431004780	431005672	892	True	1581.0	1581	98.656	1	892	1	chr2A.!!$R1	891
11	TraesCS4A01G424800	chr2A	431011415	431012307	892	True	1581.0	1581	98.656	1	892	1	chr2A.!!$R2	891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
921	923	0.039618	TACTACCTCCGTCCGGGTTT	59.96	55.0	0.0	0.0	37.07	3.27	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2256	2268	0.945099	GGCTAAGCGTGCTTAATCCC	59.055	55.0	14.63	11.31	37.97	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
392	393	9.498176	GAAGTTAGGGTTTGAAAGTTATGAGTA	57.502	33.333	0.00	0.00	0.00	2.59
494	495	8.387813	ACATGTTAGATTTGGAGTTAGGGTTTA	58.612	33.333	0.00	0.00	0.00	2.01
669	671	0.252103	AGCAAGGGGACTCGAACCTA	60.252	55.000	7.98	0.00	42.68	3.08
880	882	0.892358	ACGACCAGAAGCACTCCGTA	60.892	55.000	0.00	0.00	0.00	4.02
911	913	9.994017	ATTAGTAGGGAAAGATATACTACCTCC	57.006	37.037	0.00	0.00	35.74	4.30
912	914	6.483405	AGTAGGGAAAGATATACTACCTCCG	58.517	44.000	0.00	0.00	35.74	4.63
913	915	5.336491	AGGGAAAGATATACTACCTCCGT	57.664	43.478	0.00	0.00	0.00	4.69
914	916	5.323581	AGGGAAAGATATACTACCTCCGTC	58.676	45.833	0.00	0.00	0.00	4.79
915	917	4.462132	GGGAAAGATATACTACCTCCGTCC	59.538	50.000	0.00	0.00	0.00	4.79
916	918	4.155644	GGAAAGATATACTACCTCCGTCCG	59.844	50.000	0.00	0.00	0.00	4.79
917	919	3.347077	AGATATACTACCTCCGTCCGG	57.653	52.381	0.00	0.00	0.00	5.14
918	920	2.026449	AGATATACTACCTCCGTCCGGG	60.026	54.545	0.00	0.00	35.59	5.73
919	921	1.140312	TATACTACCTCCGTCCGGGT	58.860	55.000	0.00	0.00	39.40	5.28
920	922	0.259938	ATACTACCTCCGTCCGGGTT	59.740	55.000	0.00	0.00	37.07	4.11
921	923	0.039618	TACTACCTCCGTCCGGGTTT	59.960	55.000	0.00	0.00	37.07	3.27
922	924	0.039618	ACTACCTCCGTCCGGGTTTA	59.960	55.000	0.00	0.00	37.07	2.01
923	925	1.185315	CTACCTCCGTCCGGGTTTAA	58.815	55.000	0.00	0.00	37.07	1.52
924	926	1.550072	CTACCTCCGTCCGGGTTTAAA	59.450	52.381	0.00	0.00	37.07	1.52
925	927	0.322648	ACCTCCGTCCGGGTTTAAAG	59.677	55.000	0.00	0.00	37.00	1.85
926	928	0.392060	CCTCCGTCCGGGTTTAAAGG	60.392	60.000	0.00	0.19	37.00	3.11
927	929	0.322648	CTCCGTCCGGGTTTAAAGGT	59.677	55.000	0.00	0.00	37.00	3.50
928	930	0.321346	TCCGTCCGGGTTTAAAGGTC	59.679	55.000	0.00	0.00	37.00	3.85
929	931	0.674581	CCGTCCGGGTTTAAAGGTCC	60.675	60.000	0.00	0.00	0.00	4.46
930	932	0.674581	CGTCCGGGTTTAAAGGTCCC	60.675	60.000	0.00	2.83	37.98	4.46
936	938	2.569059	GGGTTTAAAGGTCCCGATAGC	58.431	52.381	0.00	0.00	0.00	2.97
937	939	2.569059	GGTTTAAAGGTCCCGATAGCC	58.431	52.381	0.00	0.00	0.00	3.93
938	940	2.092807	GGTTTAAAGGTCCCGATAGCCA	60.093	50.000	0.00	0.00	0.00	4.75
939	941	2.941064	GTTTAAAGGTCCCGATAGCCAC	59.059	50.000	0.00	0.00	0.00	5.01
940	942	1.125633	TAAAGGTCCCGATAGCCACC	58.874	55.000	0.00	0.00	36.73	4.61
941	943	1.632965	AAAGGTCCCGATAGCCACCC	61.633	60.000	0.00	0.00	37.06	4.61
942	944	2.766651	GGTCCCGATAGCCACCCA	60.767	66.667	0.00	0.00	31.82	4.51
943	945	2.372074	GGTCCCGATAGCCACCCAA	61.372	63.158	0.00	0.00	31.82	4.12
944	946	1.153229	GTCCCGATAGCCACCCAAC	60.153	63.158	0.00	0.00	0.00	3.77
945	947	2.203015	CCCGATAGCCACCCAACG	60.203	66.667	0.00	0.00	0.00	4.10
946	948	2.582436	CCGATAGCCACCCAACGT	59.418	61.111	0.00	0.00	0.00	3.99
947	949	1.520787	CCGATAGCCACCCAACGTC	60.521	63.158	0.00	0.00	0.00	4.34
948	950	1.876714	CGATAGCCACCCAACGTCG	60.877	63.158	0.00	0.00	0.00	5.12
949	951	1.217244	GATAGCCACCCAACGTCGT	59.783	57.895	0.00	0.00	0.00	4.34
950	952	0.804933	GATAGCCACCCAACGTCGTC	60.805	60.000	0.00	0.00	0.00	4.20
951	953	2.234913	ATAGCCACCCAACGTCGTCC	62.235	60.000	0.00	0.00	0.00	4.79
954	956	3.980989	CACCCAACGTCGTCCCGA	61.981	66.667	0.00	0.00	0.00	5.14
955	957	2.993264	ACCCAACGTCGTCCCGAT	60.993	61.111	0.00	0.00	38.42	4.18
956	958	1.678635	ACCCAACGTCGTCCCGATA	60.679	57.895	0.00	0.00	38.42	2.92
966	968	1.522569	GTCCCGATAGTGCCTGCTT	59.477	57.895	0.00	0.00	0.00	3.91
1027	1029	1.293498	GAGTGGCTCATCACCGTGT	59.707	57.895	0.00	0.00	38.34	4.49
1028	1030	1.004560	AGTGGCTCATCACCGTGTG	60.005	57.895	0.00	0.00	38.34	3.82
1080	1082	3.675619	AAGACATACGGCACCGGGC	62.676	63.158	14.51	6.36	44.69	6.13
1237	1239	3.806591	CGGTGCTTTTCTCCGTCTA	57.193	52.632	0.00	0.00	44.39	2.59
1262	1264	5.536554	TTTGCTTCTTCGTCATTCATCTC	57.463	39.130	0.00	0.00	0.00	2.75
1338	1340	1.633774	TCCTGAGTCCTGACTGTTCC	58.366	55.000	4.19	0.00	42.66	3.62
1379	1381	5.801350	TTTCCATCGTCATGTCTTCAATC	57.199	39.130	0.00	0.00	0.00	2.67
1462	1464	2.543641	GCCTTTGACATAAAGCCATGC	58.456	47.619	0.00	0.00	0.00	4.06
1545	1547	3.632604	TGTATCGTGCACCAAAAAGGAAA	59.367	39.130	12.15	0.00	41.22	3.13
1557	1559	4.261572	CCAAAAAGGAAAATCGCAGACTCA	60.262	41.667	0.00	0.00	39.04	3.41
1583	1585	1.614317	GCCAAGTGGTTGAGCTGGTAT	60.614	52.381	0.00	0.00	35.46	2.73
1589	1591	0.677731	GGTTGAGCTGGTATGCTGCA	60.678	55.000	4.13	4.13	44.17	4.41
1618	1630	3.699538	AGTCTCCAAAAACACCACCTTTC	59.300	43.478	0.00	0.00	0.00	2.62
1629	1641	4.137543	ACACCACCTTTCTTCACTTGATC	58.862	43.478	0.00	0.00	0.00	2.92
1680	1692	0.874175	TGACGACACACGAAGGCAAG	60.874	55.000	0.00	0.00	45.77	4.01
1801	1813	3.672808	ACTGCTTCTCAATCCTGTCTTG	58.327	45.455	0.00	0.00	0.00	3.02
1896	1908	0.750850	GGCAGGCTCCGTAGTTGATA	59.249	55.000	0.00	0.00	0.00	2.15
1898	1910	2.224305	GGCAGGCTCCGTAGTTGATAAT	60.224	50.000	0.00	0.00	0.00	1.28
1901	1913	4.335594	GCAGGCTCCGTAGTTGATAATTTT	59.664	41.667	0.00	0.00	0.00	1.82
1903	1915	5.584649	CAGGCTCCGTAGTTGATAATTTTGA	59.415	40.000	0.00	0.00	0.00	2.69
1909	1921	8.343168	TCCGTAGTTGATAATTTTGATGGTTT	57.657	30.769	0.00	0.00	0.00	3.27
2206	2218	2.742372	CTGGGCGCAGTACACCAC	60.742	66.667	21.92	0.00	0.00	4.16
2207	2219	4.323477	TGGGCGCAGTACACCACC	62.323	66.667	10.83	0.00	0.00	4.61
2283	2295	2.742372	ACGCTTAGCCGTGCAAGG	60.742	61.111	15.06	15.06	40.40	3.61
2284	2296	3.499737	CGCTTAGCCGTGCAAGGG	61.500	66.667	20.72	10.75	46.87	3.95
2324	2337	6.526674	CCAATAACCTTTTGTTTATCACGCTC	59.473	38.462	0.00	0.00	38.42	5.03
2388	2401	7.620880	ACACTTCACTATGCTAGGATGTTTAA	58.379	34.615	7.05	0.00	0.00	1.52
2477	2653	5.272402	TCGATATAGACATGACCCATGGAT	58.728	41.667	15.22	0.00	45.16	3.41
2482	2679	6.708885	ATAGACATGACCCATGGATTGTAT	57.291	37.500	15.22	10.51	45.16	2.29
2627	2837	5.101628	ACAATGGTAAGCAATGCAAATACG	58.898	37.500	8.35	0.00	0.00	3.06
2775	2991	6.403878	GGTGTGACCTACAACAGTACATAAT	58.596	40.000	0.00	0.00	46.52	1.28
2781	2997	8.195436	TGACCTACAACAGTACATAATAGAAGC	58.805	37.037	0.00	0.00	0.00	3.86
2843	3059	4.456911	CAGCAGGAACAAGTTCACACATAT	59.543	41.667	14.25	0.00	41.20	1.78
2931	3149	6.428159	ACTTGTCCTGAAGTTGCATAGTTAAG	59.572	38.462	0.00	0.00	31.92	1.85
2939	3178	5.766150	AGTTGCATAGTTAAGCACAAACA	57.234	34.783	0.00	0.00	41.05	2.83

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
669	671	1.351350	GCCTGTTTACCTGGGAGACTT	59.649	52.381	0.82	0.00	32.93	3.01
904	906	1.185315	TTAAACCCGGACGGAGGTAG	58.815	55.000	13.13	0.00	34.45	3.18
905	907	1.550072	CTTTAAACCCGGACGGAGGTA	59.450	52.381	13.13	0.00	34.45	3.08
906	908	0.322648	CTTTAAACCCGGACGGAGGT	59.677	55.000	13.13	0.00	38.27	3.85
907	909	0.392060	CCTTTAAACCCGGACGGAGG	60.392	60.000	13.13	5.93	37.50	4.30
908	910	0.322648	ACCTTTAAACCCGGACGGAG	59.677	55.000	13.13	5.04	37.50	4.63
909	911	0.321346	GACCTTTAAACCCGGACGGA	59.679	55.000	13.13	0.00	37.50	4.69
910	912	0.674581	GGACCTTTAAACCCGGACGG	60.675	60.000	0.73	3.25	37.81	4.79
911	913	0.674581	GGGACCTTTAAACCCGGACG	60.675	60.000	0.73	0.00	34.03	4.79
912	914	3.254629	GGGACCTTTAAACCCGGAC	57.745	57.895	0.73	0.00	34.03	4.79
916	918	2.569059	GCTATCGGGACCTTTAAACCC	58.431	52.381	2.83	2.83	40.17	4.11
917	919	2.092807	TGGCTATCGGGACCTTTAAACC	60.093	50.000	0.00	0.00	0.00	3.27
918	920	2.941064	GTGGCTATCGGGACCTTTAAAC	59.059	50.000	0.00	0.00	0.00	2.01
919	921	2.092807	GGTGGCTATCGGGACCTTTAAA	60.093	50.000	0.00	0.00	0.00	1.52
920	922	1.487558	GGTGGCTATCGGGACCTTTAA	59.512	52.381	0.00	0.00	0.00	1.52
921	923	1.125633	GGTGGCTATCGGGACCTTTA	58.874	55.000	0.00	0.00	0.00	1.85
922	924	1.632965	GGGTGGCTATCGGGACCTTT	61.633	60.000	0.00	0.00	0.00	3.11
923	925	2.070650	GGGTGGCTATCGGGACCTT	61.071	63.158	0.00	0.00	0.00	3.50
924	926	2.446036	GGGTGGCTATCGGGACCT	60.446	66.667	0.00	0.00	0.00	3.85
925	927	2.372074	TTGGGTGGCTATCGGGACC	61.372	63.158	0.00	0.00	0.00	4.46
926	928	1.153229	GTTGGGTGGCTATCGGGAC	60.153	63.158	0.00	0.00	0.00	4.46
927	929	2.727392	CGTTGGGTGGCTATCGGGA	61.727	63.158	0.00	0.00	0.00	5.14
928	930	2.203015	CGTTGGGTGGCTATCGGG	60.203	66.667	0.00	0.00	0.00	5.14
929	931	1.520787	GACGTTGGGTGGCTATCGG	60.521	63.158	0.00	0.00	0.00	4.18
930	932	1.876714	CGACGTTGGGTGGCTATCG	60.877	63.158	0.00	0.00	0.00	2.92
931	933	0.804933	GACGACGTTGGGTGGCTATC	60.805	60.000	7.90	0.00	0.00	2.08
932	934	1.217244	GACGACGTTGGGTGGCTAT	59.783	57.895	7.90	0.00	0.00	2.97
933	935	2.652530	GACGACGTTGGGTGGCTA	59.347	61.111	7.90	0.00	0.00	3.93
934	936	4.309950	GGACGACGTTGGGTGGCT	62.310	66.667	7.90	0.00	0.00	4.75
948	950	0.530870	GAAGCAGGCACTATCGGGAC	60.531	60.000	0.00	0.00	36.02	4.46
949	951	0.687757	AGAAGCAGGCACTATCGGGA	60.688	55.000	0.00	0.00	36.02	5.14
950	952	0.249657	GAGAAGCAGGCACTATCGGG	60.250	60.000	0.00	0.00	36.02	5.14
951	953	0.596083	CGAGAAGCAGGCACTATCGG	60.596	60.000	0.00	0.00	36.02	4.18
952	954	0.596083	CCGAGAAGCAGGCACTATCG	60.596	60.000	0.00	0.00	36.02	2.92
953	955	0.249657	CCCGAGAAGCAGGCACTATC	60.250	60.000	0.00	0.00	36.02	2.08
954	956	1.690219	CCCCGAGAAGCAGGCACTAT	61.690	60.000	0.00	0.00	36.02	2.12
955	957	2.359169	CCCCGAGAAGCAGGCACTA	61.359	63.158	0.00	0.00	36.02	2.74
956	958	3.710722	CCCCGAGAAGCAGGCACT	61.711	66.667	0.00	0.00	43.88	4.40
1027	1029	2.357034	GGAACGCGGTGAAGAGCA	60.357	61.111	12.47	0.00	0.00	4.26
1028	1030	2.048127	AGGAACGCGGTGAAGAGC	60.048	61.111	12.47	0.00	0.00	4.09
1237	1239	3.141398	TGAATGACGAAGAAGCAAAGCT	58.859	40.909	0.00	0.00	42.56	3.74
1262	1264	1.139853	GCACCCTCACCTCCTATGAAG	59.860	57.143	0.00	0.00	0.00	3.02
1427	1429	1.867595	AAGGCCCCCTGATGGAAGTG	61.868	60.000	0.00	0.00	35.39	3.16
1462	1464	2.813179	GAGCCAGTATGCAACGCCG	61.813	63.158	0.00	0.00	31.97	6.46
1545	1547	2.079925	GGCTTTTCTGAGTCTGCGATT	58.920	47.619	0.00	0.00	0.00	3.34
1557	1559	1.683385	GCTCAACCACTTGGCTTTTCT	59.317	47.619	0.00	0.00	39.32	2.52
1589	1591	2.427095	GTGTTTTTGGAGACTGGCTGTT	59.573	45.455	0.00	0.00	0.00	3.16
1618	1630	5.784750	TTGTTATCGCAGATCAAGTGAAG	57.215	39.130	5.67	0.00	45.12	3.02
1629	1641	7.382218	ACAGAAAAGGAAAAATTGTTATCGCAG	59.618	33.333	0.00	0.00	0.00	5.18
1680	1692	1.093159	CAGCCTGCTCTTCATGGAAC	58.907	55.000	0.00	0.00	0.00	3.62
1859	1871	4.466828	CTGCCGTTAGTTGTTGATTTGAG	58.533	43.478	0.00	0.00	0.00	3.02
1896	1908	8.620116	AAATCGGAATCAAAACCATCAAAATT	57.380	26.923	0.00	0.00	0.00	1.82
1898	1910	9.717942	ATAAAATCGGAATCAAAACCATCAAAA	57.282	25.926	0.00	0.00	0.00	2.44
1901	1913	9.364989	GAAATAAAATCGGAATCAAAACCATCA	57.635	29.630	0.00	0.00	0.00	3.07
1903	1915	9.586435	GAGAAATAAAATCGGAATCAAAACCAT	57.414	29.630	0.00	0.00	0.00	3.55
1909	1921	8.560355	TGTCTGAGAAATAAAATCGGAATCAA	57.440	30.769	0.00	0.00	30.43	2.57
1916	1928	5.062183	TGACGCTGTCTGAGAAATAAAATCG	59.938	40.000	9.49	0.00	33.15	3.34
2206	2218	3.344137	AAGCCCATGTACTGCCCGG	62.344	63.158	0.00	0.00	0.00	5.73
2207	2219	1.819632	GAAGCCCATGTACTGCCCG	60.820	63.158	0.00	0.00	0.00	6.13
2255	2267	1.475213	GGCTAAGCGTGCTTAATCCCT	60.475	52.381	14.63	0.00	37.97	4.20
2256	2268	0.945099	GGCTAAGCGTGCTTAATCCC	59.055	55.000	14.63	11.31	37.97	3.85
2290	2302	6.270064	AACAAAAGGTTATTGGAACAACTCG	58.730	36.000	0.00	0.00	40.63	4.18
2324	2337	1.965930	TGCCTTAACAGTGCGGCAG	60.966	57.895	1.18	0.00	46.75	4.85
2373	2386	8.079211	TCTTCACTAGTTAAACATCCTAGCAT	57.921	34.615	0.00	0.00	33.09	3.79
2413	2426	9.599322	CAAACTTAGCAGTTGAAATAGTGTAAG	57.401	33.333	0.00	0.00	42.89	2.34
2455	2476	5.604758	ATCCATGGGTCATGTCTATATCG	57.395	43.478	13.02	0.00	39.94	2.92
2466	2642	6.068010	GGATAACAATACAATCCATGGGTCA	58.932	40.000	13.02	0.00	39.24	4.02
2627	2837	5.177696	CAGTCTAAAGCCGTATTTATGCCTC	59.822	44.000	0.00	0.00	0.00	4.70
2775	2991	8.004087	AGTATTGACACTTATTACCGCTTCTA	57.996	34.615	0.00	0.00	0.00	2.10
2843	3059	6.716934	TTTTAGTAAACCCATTGTTGCTGA	57.283	33.333	0.00	0.00	37.23	4.26

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.