Multiple sequence alignment - TraesCS4A01G424300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G424300 chr4A 100.000 2786 0 0 1 2786 694849564 694846779 0.000000e+00 5145
1 TraesCS4A01G424300 chr7D 94.150 2564 101 17 266 2786 32250670 32253227 0.000000e+00 3858
2 TraesCS4A01G424300 chr7D 81.508 2109 274 63 559 2589 45706525 45704455 0.000000e+00 1628
3 TraesCS4A01G424300 chr7D 74.797 738 139 29 926 1626 16709061 16709788 3.510000e-74 289
4 TraesCS4A01G424300 chr7D 88.500 200 17 4 3 201 32250466 32250660 1.290000e-58 237
5 TraesCS4A01G424300 chr7A 94.559 2426 90 12 394 2786 32413142 32415558 0.000000e+00 3711
6 TraesCS4A01G424300 chr7A 82.316 1934 261 48 293 2191 47903871 47901984 0.000000e+00 1602
7 TraesCS4A01G424300 chr7A 75.474 738 136 26 925 1626 15695571 15696299 4.480000e-83 318
8 TraesCS4A01G424300 chr7A 89.560 182 13 3 19 200 32412867 32413042 2.790000e-55 226
9 TraesCS4A01G424300 chrUn 81.855 1995 265 50 334 2282 320961658 320963601 0.000000e+00 1589
10 TraesCS4A01G424300 chr2D 75.169 1333 269 44 556 1855 85673869 85675172 3.110000e-159 571
11 TraesCS4A01G424300 chr2D 75.000 1340 260 53 556 1855 84916882 84918186 1.460000e-152 549
12 TraesCS4A01G424300 chr2A 74.379 1288 262 48 559 1806 84153877 84152618 3.230000e-134 488


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G424300 chr4A 694846779 694849564 2785 True 5145.0 5145 100.0000 1 2786 1 chr4A.!!$R1 2785
1 TraesCS4A01G424300 chr7D 32250466 32253227 2761 False 2047.5 3858 91.3250 3 2786 2 chr7D.!!$F2 2783
2 TraesCS4A01G424300 chr7D 45704455 45706525 2070 True 1628.0 1628 81.5080 559 2589 1 chr7D.!!$R1 2030
3 TraesCS4A01G424300 chr7D 16709061 16709788 727 False 289.0 289 74.7970 926 1626 1 chr7D.!!$F1 700
4 TraesCS4A01G424300 chr7A 32412867 32415558 2691 False 1968.5 3711 92.0595 19 2786 2 chr7A.!!$F2 2767
5 TraesCS4A01G424300 chr7A 47901984 47903871 1887 True 1602.0 1602 82.3160 293 2191 1 chr7A.!!$R1 1898
6 TraesCS4A01G424300 chr7A 15695571 15696299 728 False 318.0 318 75.4740 925 1626 1 chr7A.!!$F1 701
7 TraesCS4A01G424300 chrUn 320961658 320963601 1943 False 1589.0 1589 81.8550 334 2282 1 chrUn.!!$F1 1948
8 TraesCS4A01G424300 chr2D 85673869 85675172 1303 False 571.0 571 75.1690 556 1855 1 chr2D.!!$F2 1299
9 TraesCS4A01G424300 chr2D 84916882 84918186 1304 False 549.0 549 75.0000 556 1855 1 chr2D.!!$F1 1299
10 TraesCS4A01G424300 chr2A 84152618 84153877 1259 True 488.0 488 74.3790 559 1806 1 chr2A.!!$R1 1247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 925 0.460284 CATCGGCATATAGGGGACGC 60.46 60.0 0.0 0.0 34.95 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 2412 2.423538 GCAAGTTGTGTGAAACTCTGGT 59.576 45.455 4.48 0.0 39.48 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.873699 AACTATGGGCCTAGTGTTAATCTAT 57.126 36.000 4.53 0.00 32.32 1.98
56 57 7.483580 ACTATGGGCCTAGTGTTAATCTATC 57.516 40.000 4.53 0.00 30.77 2.08
57 58 7.249715 ACTATGGGCCTAGTGTTAATCTATCT 58.750 38.462 4.53 0.00 30.77 1.98
58 59 8.399529 ACTATGGGCCTAGTGTTAATCTATCTA 58.600 37.037 4.53 0.00 30.77 1.98
63 64 6.269307 GGCCTAGTGTTAATCTATCTAACCCA 59.731 42.308 0.00 0.00 0.00 4.51
100 101 1.295792 TGGTTTGTGTTCTCAGTCGC 58.704 50.000 0.00 0.00 0.00 5.19
101 102 1.295792 GGTTTGTGTTCTCAGTCGCA 58.704 50.000 0.00 0.00 0.00 5.10
110 111 2.654749 TCTCAGTCGCATAACACCTG 57.345 50.000 0.00 0.00 0.00 4.00
117 118 2.120312 TCGCATAACACCTGGGGATTA 58.880 47.619 1.10 0.00 0.00 1.75
207 209 8.991243 TGAAAAGATTGCATAAAAAGGATGAG 57.009 30.769 0.00 0.00 0.00 2.90
208 210 8.805175 TGAAAAGATTGCATAAAAAGGATGAGA 58.195 29.630 0.00 0.00 0.00 3.27
213 215 9.649167 AGATTGCATAAAAAGGATGAGAAAAAG 57.351 29.630 0.00 0.00 0.00 2.27
214 216 8.782339 ATTGCATAAAAAGGATGAGAAAAAGG 57.218 30.769 0.00 0.00 0.00 3.11
215 217 7.537596 TGCATAAAAAGGATGAGAAAAAGGA 57.462 32.000 0.00 0.00 0.00 3.36
216 218 7.378181 TGCATAAAAAGGATGAGAAAAAGGAC 58.622 34.615 0.00 0.00 0.00 3.85
217 219 7.233348 TGCATAAAAAGGATGAGAAAAAGGACT 59.767 33.333 0.00 0.00 0.00 3.85
218 220 8.090831 GCATAAAAAGGATGAGAAAAAGGACTT 58.909 33.333 0.00 0.00 0.00 3.01
221 223 8.996651 AAAAAGGATGAGAAAAAGGACTTAGA 57.003 30.769 0.00 0.00 0.00 2.10
222 224 8.628630 AAAAGGATGAGAAAAAGGACTTAGAG 57.371 34.615 0.00 0.00 0.00 2.43
223 225 5.739959 AGGATGAGAAAAAGGACTTAGAGC 58.260 41.667 0.00 0.00 0.00 4.09
224 226 5.487131 AGGATGAGAAAAAGGACTTAGAGCT 59.513 40.000 0.00 0.00 0.00 4.09
225 227 5.584251 GGATGAGAAAAAGGACTTAGAGCTG 59.416 44.000 0.00 0.00 0.00 4.24
226 228 4.319177 TGAGAAAAAGGACTTAGAGCTGC 58.681 43.478 0.00 0.00 0.00 5.25
227 229 4.202357 TGAGAAAAAGGACTTAGAGCTGCA 60.202 41.667 1.02 0.00 0.00 4.41
228 230 4.718961 AGAAAAAGGACTTAGAGCTGCAA 58.281 39.130 1.02 0.00 0.00 4.08
229 231 5.320277 AGAAAAAGGACTTAGAGCTGCAAT 58.680 37.500 1.02 0.00 0.00 3.56
230 232 6.476378 AGAAAAAGGACTTAGAGCTGCAATA 58.524 36.000 1.02 0.00 0.00 1.90
231 233 6.372937 AGAAAAAGGACTTAGAGCTGCAATAC 59.627 38.462 1.02 0.00 0.00 1.89
232 234 5.428184 AAAGGACTTAGAGCTGCAATACT 57.572 39.130 1.02 0.00 0.00 2.12
233 235 5.428184 AAGGACTTAGAGCTGCAATACTT 57.572 39.130 1.02 0.00 0.00 2.24
234 236 6.546428 AAGGACTTAGAGCTGCAATACTTA 57.454 37.500 1.02 0.00 0.00 2.24
235 237 6.155475 AGGACTTAGAGCTGCAATACTTAG 57.845 41.667 1.02 2.07 0.00 2.18
236 238 5.069781 AGGACTTAGAGCTGCAATACTTAGG 59.930 44.000 1.02 0.00 0.00 2.69
237 239 5.283457 ACTTAGAGCTGCAATACTTAGGG 57.717 43.478 1.02 0.00 0.00 3.53
238 240 2.629336 AGAGCTGCAATACTTAGGGC 57.371 50.000 1.02 0.00 0.00 5.19
239 241 1.839994 AGAGCTGCAATACTTAGGGCA 59.160 47.619 1.02 0.00 34.66 5.36
244 246 3.931907 TGCAATACTTAGGGCAGATGT 57.068 42.857 0.00 0.00 0.00 3.06
245 247 3.544684 TGCAATACTTAGGGCAGATGTG 58.455 45.455 0.00 0.00 0.00 3.21
311 317 6.700081 GTCGTCACTTGGTATGCTATAATTGA 59.300 38.462 0.00 0.00 0.00 2.57
353 365 2.689983 CAAAGTATGAATCACCCCCTGC 59.310 50.000 0.00 0.00 0.00 4.85
374 386 3.744426 GCTGCATGATTTGGAAATATGCC 59.256 43.478 0.00 0.00 42.48 4.40
518 541 4.518211 CAGTGAGATGAGCTTCTTGGTTTT 59.482 41.667 0.00 0.00 0.00 2.43
656 685 4.226761 CCGTCTAAGAAAATTTGCCACAC 58.773 43.478 0.00 0.00 0.00 3.82
660 689 5.920840 GTCTAAGAAAATTTGCCACACCTTC 59.079 40.000 0.00 0.00 0.00 3.46
671 700 1.145377 ACACCTTCGGCTCAAACGT 59.855 52.632 0.00 0.00 0.00 3.99
893 925 0.460284 CATCGGCATATAGGGGACGC 60.460 60.000 0.00 0.00 34.95 5.19
912 944 0.868406 CCGATACGTCGTACTACCCC 59.132 60.000 7.36 0.00 46.25 4.95
996 1028 1.202313 GCACTCCGACAGACTCCATAC 60.202 57.143 0.00 0.00 0.00 2.39
1023 1055 1.532868 CGCTATTTGGGCTGCTCATAC 59.467 52.381 1.56 0.00 0.00 2.39
1030 1062 0.320771 GGGCTGCTCATACGGGTATG 60.321 60.000 11.67 11.67 43.16 2.39
1031 1063 0.951040 GGCTGCTCATACGGGTATGC 60.951 60.000 12.82 4.50 41.92 3.14
1362 1397 0.957395 AGCTTGGCATGTCGGAAGTG 60.957 55.000 2.12 0.00 0.00 3.16
1667 1735 2.236395 ACGAACCTTGGATTGAGGTAGG 59.764 50.000 0.00 0.00 46.60 3.18
1772 1840 1.463674 CTCCCCAGTTTGGTGTATGC 58.536 55.000 0.00 0.00 35.17 3.14
1779 1847 3.141398 CAGTTTGGTGTATGCTGTCAGT 58.859 45.455 0.93 0.00 0.00 3.41
1807 1875 3.411446 ACCATTTCATCTTTGCTCGTCA 58.589 40.909 0.00 0.00 0.00 4.35
1838 1907 1.661341 CTAGTCTTGCACATGCCCTC 58.339 55.000 0.49 0.00 41.18 4.30
1870 1939 6.433766 GTGCTTTTATGATTTAGCTAGCCAG 58.566 40.000 12.13 0.00 34.77 4.85
1969 2064 6.899393 AATCCTGTATGCTGAACAAGAAAA 57.101 33.333 0.00 0.00 0.00 2.29
1975 2070 7.327761 CCTGTATGCTGAACAAGAAAAGATTTG 59.672 37.037 0.00 0.00 0.00 2.32
2010 2105 5.255397 TCCAACCTGGAACTTGTTGATAT 57.745 39.130 0.00 0.00 45.00 1.63
2091 2186 2.881403 GCTTTCTTGCTGGGATCCTTCA 60.881 50.000 12.58 4.40 0.00 3.02
2093 2188 3.287867 TTCTTGCTGGGATCCTTCATC 57.712 47.619 12.58 0.00 0.00 2.92
2206 2325 3.519913 ACTCTATTTGGGGGACACTCTTC 59.480 47.826 0.00 0.00 0.00 2.87
2283 2412 4.098349 ACATTGTTTTCTTTCAGCAGCAGA 59.902 37.500 0.00 0.00 0.00 4.26
2338 2479 7.812690 TTAGCCTCGTATATTTGTACTCTGA 57.187 36.000 0.00 0.00 0.00 3.27
2343 2484 7.360691 GCCTCGTATATTTGTACTCTGATCGTA 60.361 40.741 0.00 0.00 0.00 3.43
2464 2610 3.466836 TGTGGTGCTCTTGTACAGAAAG 58.533 45.455 0.00 0.00 0.00 2.62
2477 2623 5.054477 TGTACAGAAAGTCAAGGTGTTAGC 58.946 41.667 0.00 0.00 0.00 3.09
2520 2666 7.228840 CGATCCAAATGTAGCACAAATTTTTG 58.771 34.615 0.00 0.00 43.62 2.44
2570 2727 5.413833 AGGAAATGCTAATATGCTCGAATGG 59.586 40.000 0.00 0.00 0.00 3.16
2606 2763 1.068333 ACCATCAACATTCAACAGCGC 60.068 47.619 0.00 0.00 0.00 5.92
2665 2824 3.411446 TGGACCTAGTTTGAACAGCATG 58.589 45.455 0.00 0.00 46.00 4.06
2669 2828 3.010584 ACCTAGTTTGAACAGCATGGGAT 59.989 43.478 0.00 0.00 43.62 3.85
2671 2830 5.103940 ACCTAGTTTGAACAGCATGGGATAT 60.104 40.000 0.00 0.00 43.62 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.814268 GCCGCATCCGCATGTTGT 61.814 61.111 0.00 0.00 38.40 3.32
1 2 4.557605 GGCCGCATCCGCATGTTG 62.558 66.667 0.00 0.00 38.40 3.33
12 13 1.539157 TACACAATTTCATGGCCGCA 58.461 45.000 0.00 0.00 0.00 5.69
63 64 6.546772 ACAAACCATCATGCCAAAATTCTTTT 59.453 30.769 0.00 0.00 0.00 2.27
83 84 4.025229 TGTTATGCGACTGAGAACACAAAC 60.025 41.667 0.00 0.00 0.00 2.93
100 101 5.571658 GCTATCCTAATCCCCAGGTGTTATG 60.572 48.000 0.00 0.00 34.56 1.90
101 102 4.536489 GCTATCCTAATCCCCAGGTGTTAT 59.464 45.833 0.00 0.00 34.56 1.89
110 111 4.715792 GGGTAACTAGCTATCCTAATCCCC 59.284 50.000 0.00 0.00 0.00 4.81
201 203 5.584251 CAGCTCTAAGTCCTTTTTCTCATCC 59.416 44.000 0.00 0.00 0.00 3.51
204 206 4.202357 TGCAGCTCTAAGTCCTTTTTCTCA 60.202 41.667 0.00 0.00 0.00 3.27
205 207 4.319177 TGCAGCTCTAAGTCCTTTTTCTC 58.681 43.478 0.00 0.00 0.00 2.87
206 208 4.357918 TGCAGCTCTAAGTCCTTTTTCT 57.642 40.909 0.00 0.00 0.00 2.52
207 209 5.635417 ATTGCAGCTCTAAGTCCTTTTTC 57.365 39.130 0.00 0.00 0.00 2.29
208 210 6.241645 AGTATTGCAGCTCTAAGTCCTTTTT 58.758 36.000 0.00 0.00 0.00 1.94
210 212 5.428184 AGTATTGCAGCTCTAAGTCCTTT 57.572 39.130 0.00 0.00 0.00 3.11
211 213 5.428184 AAGTATTGCAGCTCTAAGTCCTT 57.572 39.130 0.00 0.00 0.00 3.36
212 214 5.069781 CCTAAGTATTGCAGCTCTAAGTCCT 59.930 44.000 0.00 0.00 0.00 3.85
213 215 5.293560 CCTAAGTATTGCAGCTCTAAGTCC 58.706 45.833 0.00 0.00 0.00 3.85
214 216 5.293560 CCCTAAGTATTGCAGCTCTAAGTC 58.706 45.833 0.00 0.00 0.00 3.01
215 217 4.443598 GCCCTAAGTATTGCAGCTCTAAGT 60.444 45.833 0.00 0.00 0.00 2.24
216 218 4.061596 GCCCTAAGTATTGCAGCTCTAAG 58.938 47.826 0.00 0.00 0.00 2.18
217 219 3.454447 TGCCCTAAGTATTGCAGCTCTAA 59.546 43.478 0.00 0.00 0.00 2.10
218 220 3.038280 TGCCCTAAGTATTGCAGCTCTA 58.962 45.455 0.00 0.00 0.00 2.43
219 221 1.839994 TGCCCTAAGTATTGCAGCTCT 59.160 47.619 0.00 0.00 0.00 4.09
220 222 2.216898 CTGCCCTAAGTATTGCAGCTC 58.783 52.381 0.00 0.00 43.96 4.09
221 223 2.338577 CTGCCCTAAGTATTGCAGCT 57.661 50.000 0.00 0.00 43.96 4.24
224 226 3.544684 CACATCTGCCCTAAGTATTGCA 58.455 45.455 0.00 0.00 0.00 4.08
225 227 2.291741 GCACATCTGCCCTAAGTATTGC 59.708 50.000 0.00 0.00 37.45 3.56
226 228 3.813443 AGCACATCTGCCCTAAGTATTG 58.187 45.455 0.00 0.00 45.53 1.90
227 229 4.510167 AAGCACATCTGCCCTAAGTATT 57.490 40.909 0.00 0.00 45.53 1.89
228 230 4.510167 AAAGCACATCTGCCCTAAGTAT 57.490 40.909 0.00 0.00 45.53 2.12
229 231 4.683400 GCTAAAGCACATCTGCCCTAAGTA 60.683 45.833 0.00 0.00 45.53 2.24
230 232 2.887151 AAAGCACATCTGCCCTAAGT 57.113 45.000 0.00 0.00 45.53 2.24
231 233 2.615912 GCTAAAGCACATCTGCCCTAAG 59.384 50.000 0.00 0.00 45.53 2.18
232 234 2.643551 GCTAAAGCACATCTGCCCTAA 58.356 47.619 0.00 0.00 45.53 2.69
233 235 2.332063 GCTAAAGCACATCTGCCCTA 57.668 50.000 0.00 0.00 45.53 3.53
234 236 3.181526 GCTAAAGCACATCTGCCCT 57.818 52.632 0.00 0.00 45.53 5.19
245 247 9.658475 AAATAAAATTTTCGGTTTTGCTAAAGC 57.342 25.926 6.72 11.98 42.50 3.51
248 250 9.922305 CACAAATAAAATTTTCGGTTTTGCTAA 57.078 25.926 6.72 0.00 31.71 3.09
249 251 9.314321 TCACAAATAAAATTTTCGGTTTTGCTA 57.686 25.926 6.72 3.92 31.71 3.49
250 252 8.202745 TCACAAATAAAATTTTCGGTTTTGCT 57.797 26.923 6.72 3.46 31.71 3.91
251 253 8.828029 TTCACAAATAAAATTTTCGGTTTTGC 57.172 26.923 6.72 0.00 31.71 3.68
272 274 6.199154 CCAAGTGACGACAGTATCATATTCAC 59.801 42.308 0.00 0.00 0.00 3.18
286 288 6.700081 TCAATTATAGCATACCAAGTGACGAC 59.300 38.462 0.00 0.00 0.00 4.34
311 317 5.957771 TGAGAGCACCAGTATCCTTAAAT 57.042 39.130 0.00 0.00 0.00 1.40
353 365 5.209818 AGGCATATTTCCAAATCATGCAG 57.790 39.130 18.15 0.00 37.26 4.41
383 395 3.016031 TGTTCATGTTCAGCACAACAGT 58.984 40.909 6.63 0.00 39.63 3.55
508 531 6.326323 AGAAATGCTAAAGGGAAAACCAAGAA 59.674 34.615 0.00 0.00 43.89 2.52
518 541 8.113462 AGTAAATGGTTAGAAATGCTAAAGGGA 58.887 33.333 0.00 0.00 40.60 4.20
608 631 0.175760 TATGACGGCCACTTCTCTGC 59.824 55.000 2.24 0.00 0.00 4.26
660 689 0.039074 AGTCTGAGACGTTTGAGCCG 60.039 55.000 6.99 0.00 37.67 5.52
912 944 3.676873 GCTGCCATTTGGTGTTGGATAAG 60.677 47.826 0.00 0.00 34.81 1.73
996 1028 1.200716 CAGCCCAAATAGCGCATATGG 59.799 52.381 11.47 12.32 34.64 2.74
1023 1055 5.455056 AACTGTAGAAGATAGCATACCCG 57.545 43.478 0.00 0.00 0.00 5.28
1030 1062 6.727824 TTGCTCAAAACTGTAGAAGATAGC 57.272 37.500 0.00 0.00 0.00 2.97
1031 1063 7.065563 AGCATTGCTCAAAACTGTAGAAGATAG 59.934 37.037 5.03 0.00 30.62 2.08
1362 1397 1.301401 TCCGCACACTACAACTGGC 60.301 57.895 0.00 0.00 0.00 4.85
1667 1735 2.617274 GGCACGAACTGACCAAGCC 61.617 63.158 0.00 0.00 0.00 4.35
1772 1840 4.129380 TGAAATGGTTCACTCACTGACAG 58.871 43.478 0.00 0.00 38.88 3.51
1779 1847 4.828939 AGCAAAGATGAAATGGTTCACTCA 59.171 37.500 0.00 0.00 46.40 3.41
1807 1875 3.084786 GCAAGACTAGGCAAAACTCCAT 58.915 45.455 0.00 0.00 0.00 3.41
1838 1907 6.749118 GCTAAATCATAAAAGCACCAGTTGAG 59.251 38.462 0.00 0.00 35.05 3.02
1870 1939 5.176958 GTGATTACATGGACGCCATACTTAC 59.823 44.000 10.44 4.99 43.15 2.34
1969 2064 4.792068 TGGAAGACAAGTCCAACAAATCT 58.208 39.130 0.00 0.00 42.29 2.40
2033 2128 5.355596 AGAGAAGATCCATAGCAAGAAACG 58.644 41.667 0.00 0.00 0.00 3.60
2047 2142 8.491331 AGCTGAAAAGTAAATGAGAGAAGATC 57.509 34.615 0.00 0.00 0.00 2.75
2150 2252 4.220821 TCTTAGGAGCATCTTTCTGAACGT 59.779 41.667 0.00 0.00 33.73 3.99
2283 2412 2.423538 GCAAGTTGTGTGAAACTCTGGT 59.576 45.455 4.48 0.00 39.48 4.00
2385 2527 5.798132 TCTTCTGCAAGCTTCTATTCTGAA 58.202 37.500 0.00 0.00 0.00 3.02
2464 2610 5.689383 TTCATCAAAGCTAACACCTTGAC 57.311 39.130 0.00 0.00 0.00 3.18
2477 2623 5.210715 GGATCGCAATAAGCTTCATCAAAG 58.789 41.667 0.00 0.00 42.61 2.77
2520 2666 8.746922 TCTTAATGAAAATGTCATGCTTCAAC 57.253 30.769 12.33 0.00 46.80 3.18
2596 2753 3.729356 TTTTTGCAGCGCTGTTGAA 57.271 42.105 35.80 24.39 0.00 2.69
2665 2824 9.936759 CTTTAGGTCTCAGATCTTTTATATCCC 57.063 37.037 0.00 0.00 0.00 3.85
2669 2828 8.204836 GGTGCTTTAGGTCTCAGATCTTTTATA 58.795 37.037 0.00 0.00 0.00 0.98
2671 2830 6.013725 TGGTGCTTTAGGTCTCAGATCTTTTA 60.014 38.462 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.