Multiple sequence alignment - TraesCS4A01G423600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G423600 chr4A 100.000 2704 0 0 1 2704 693526442 693523739 0.000000e+00 4994.0
1 TraesCS4A01G423600 chr7A 85.017 1435 118 53 608 1997 33541686 33540304 0.000000e+00 1369.0
2 TraesCS4A01G423600 chr7A 85.756 681 67 17 893 1562 33497248 33496587 0.000000e+00 693.0
3 TraesCS4A01G423600 chr7A 89.262 298 29 3 2268 2563 690517043 690516747 1.180000e-98 370.0
4 TraesCS4A01G423600 chr7A 81.029 311 36 12 1680 1986 33496493 33496202 2.710000e-55 226.0
5 TraesCS4A01G423600 chr7A 81.818 165 8 11 608 771 33497459 33497316 4.730000e-23 119.0
6 TraesCS4A01G423600 chr7D 91.556 983 53 11 1090 2053 33156724 33155753 0.000000e+00 1328.0
7 TraesCS4A01G423600 chr7D 85.329 593 62 11 2127 2702 597621365 597621949 8.340000e-165 590.0
8 TraesCS4A01G423600 chr7D 88.662 441 44 4 2268 2704 597546666 597547104 1.430000e-147 532.0
9 TraesCS4A01G423600 chr7D 88.036 443 35 6 679 1110 33157229 33156794 2.400000e-140 508.0
10 TraesCS4A01G423600 chr6A 94.063 539 31 1 1 538 45473744 45473206 0.000000e+00 817.0
11 TraesCS4A01G423600 chr5B 93.633 534 21 1 1 534 521408052 521407532 0.000000e+00 785.0
12 TraesCS4A01G423600 chr5B 89.259 540 35 6 1 535 267751387 267751908 0.000000e+00 654.0
13 TraesCS4A01G423600 chr5B 92.254 142 11 0 395 536 267738658 267738517 4.570000e-48 202.0
14 TraesCS4A01G423600 chr5B 100.000 28 0 0 2477 2504 117835700 117835673 5.000000e-03 52.8
15 TraesCS4A01G423600 chr3B 92.697 534 26 1 1 534 459430679 459431199 0.000000e+00 758.0
16 TraesCS4A01G423600 chr3B 92.199 141 11 0 395 535 459417748 459417608 1.640000e-47 200.0
17 TraesCS4A01G423600 chr3A 90.244 533 40 7 1 532 43413037 43413558 0.000000e+00 686.0
18 TraesCS4A01G423600 chr3A 90.244 533 40 7 1 532 43990472 43990993 0.000000e+00 686.0
19 TraesCS4A01G423600 chr6D 87.546 538 42 5 1 534 251625672 251626188 1.390000e-167 599.0
20 TraesCS4A01G423600 chr7B 88.176 296 30 5 2412 2702 676863125 676862830 5.540000e-92 348.0
21 TraesCS4A01G423600 chr7B 79.412 408 58 9 2130 2513 676860774 676860369 5.740000e-67 265.0
22 TraesCS4A01G423600 chr7B 79.931 289 40 10 2130 2405 676533375 676533092 2.120000e-46 196.0
23 TraesCS4A01G423600 chr5A 78.621 145 22 5 2544 2680 110660759 110660616 1.330000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G423600 chr4A 693523739 693526442 2703 True 4994.0 4994 100.000000 1 2704 1 chr4A.!!$R1 2703
1 TraesCS4A01G423600 chr7A 33540304 33541686 1382 True 1369.0 1369 85.017000 608 1997 1 chr7A.!!$R1 1389
2 TraesCS4A01G423600 chr7A 33496202 33497459 1257 True 346.0 693 82.867667 608 1986 3 chr7A.!!$R3 1378
3 TraesCS4A01G423600 chr7D 33155753 33157229 1476 True 918.0 1328 89.796000 679 2053 2 chr7D.!!$R1 1374
4 TraesCS4A01G423600 chr7D 597621365 597621949 584 False 590.0 590 85.329000 2127 2702 1 chr7D.!!$F2 575
5 TraesCS4A01G423600 chr6A 45473206 45473744 538 True 817.0 817 94.063000 1 538 1 chr6A.!!$R1 537
6 TraesCS4A01G423600 chr5B 521407532 521408052 520 True 785.0 785 93.633000 1 534 1 chr5B.!!$R3 533
7 TraesCS4A01G423600 chr5B 267751387 267751908 521 False 654.0 654 89.259000 1 535 1 chr5B.!!$F1 534
8 TraesCS4A01G423600 chr3B 459430679 459431199 520 False 758.0 758 92.697000 1 534 1 chr3B.!!$F1 533
9 TraesCS4A01G423600 chr3A 43413037 43413558 521 False 686.0 686 90.244000 1 532 1 chr3A.!!$F1 531
10 TraesCS4A01G423600 chr3A 43990472 43990993 521 False 686.0 686 90.244000 1 532 1 chr3A.!!$F2 531
11 TraesCS4A01G423600 chr6D 251625672 251626188 516 False 599.0 599 87.546000 1 534 1 chr6D.!!$F1 533
12 TraesCS4A01G423600 chr7B 676860369 676863125 2756 True 306.5 348 83.794000 2130 2702 2 chr7B.!!$R2 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 413 1.406341 CGTGTAGGGGGTTATGTGTGG 60.406 57.143 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 2322 0.03563 GAGCTGCTCTGATGTTGGGT 60.036 55.0 21.93 0.0 0.0 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
241 243 4.625781 GTCGCCGCCGCTAGGTAG 62.626 72.222 0.00 0.00 40.50 3.18
287 292 4.402793 GTCACACATACATGGGAGTCTAGT 59.597 45.833 0.00 0.00 30.89 2.57
299 304 2.485302 GGAGTCTAGTAGGAGGGTCGAC 60.485 59.091 7.13 7.13 0.00 4.20
367 372 2.703007 GACCAGAAGTCTAGGCATGGAT 59.297 50.000 17.22 4.76 42.69 3.41
408 413 1.406341 CGTGTAGGGGGTTATGTGTGG 60.406 57.143 0.00 0.00 0.00 4.17
465 470 7.491372 CACCTCTTACTAGATGCGTTGATTTTA 59.509 37.037 0.00 0.00 0.00 1.52
472 477 7.220030 ACTAGATGCGTTGATTTTAGATCCAT 58.780 34.615 0.00 0.00 0.00 3.41
473 478 8.367911 ACTAGATGCGTTGATTTTAGATCCATA 58.632 33.333 0.00 0.00 0.00 2.74
475 480 7.220030 AGATGCGTTGATTTTAGATCCATAGT 58.780 34.615 0.00 0.00 0.00 2.12
500 505 3.490526 CACGGGCAAACTTTTCAGATTTG 59.509 43.478 0.00 0.00 36.58 2.32
540 545 5.996644 TCACAGGATACGTTCCCATTTAAT 58.003 37.500 11.61 0.00 46.81 1.40
543 548 6.317642 CACAGGATACGTTCCCATTTAATGAA 59.682 38.462 6.50 0.00 46.81 2.57
544 549 6.317893 ACAGGATACGTTCCCATTTAATGAAC 59.682 38.462 6.50 3.28 46.81 3.18
548 553 4.805219 ACGTTCCCATTTAATGAACAAGC 58.195 39.130 6.50 0.00 38.59 4.01
549 554 4.522789 ACGTTCCCATTTAATGAACAAGCT 59.477 37.500 6.50 0.00 38.59 3.74
550 555 5.010617 ACGTTCCCATTTAATGAACAAGCTT 59.989 36.000 6.50 0.00 38.59 3.74
552 557 6.747280 CGTTCCCATTTAATGAACAAGCTTAG 59.253 38.462 6.50 0.00 38.59 2.18
553 558 6.773976 TCCCATTTAATGAACAAGCTTAGG 57.226 37.500 6.50 0.00 0.00 2.69
554 559 6.489603 TCCCATTTAATGAACAAGCTTAGGA 58.510 36.000 6.50 0.00 0.00 2.94
555 560 6.377146 TCCCATTTAATGAACAAGCTTAGGAC 59.623 38.462 6.50 0.00 0.00 3.85
557 562 7.309744 CCCATTTAATGAACAAGCTTAGGACAA 60.310 37.037 6.50 0.00 0.00 3.18
558 563 7.756722 CCATTTAATGAACAAGCTTAGGACAAG 59.243 37.037 6.50 0.00 0.00 3.16
560 565 7.817418 TTAATGAACAAGCTTAGGACAAGTT 57.183 32.000 0.00 0.00 0.00 2.66
561 566 6.715347 AATGAACAAGCTTAGGACAAGTTT 57.285 33.333 0.00 0.00 0.00 2.66
584 589 4.768130 TTCTAACTCTGAACGGAGTGAG 57.232 45.455 17.64 17.64 45.00 3.51
585 590 3.752665 TCTAACTCTGAACGGAGTGAGT 58.247 45.455 21.00 8.99 45.00 3.41
586 591 4.903054 TCTAACTCTGAACGGAGTGAGTA 58.097 43.478 21.00 9.52 45.00 2.59
589 594 3.220110 ACTCTGAACGGAGTGAGTAACA 58.780 45.455 14.42 0.00 45.00 2.41
590 595 3.253677 ACTCTGAACGGAGTGAGTAACAG 59.746 47.826 14.42 0.00 45.00 3.16
591 596 3.483421 TCTGAACGGAGTGAGTAACAGA 58.517 45.455 0.00 0.00 45.00 3.41
592 597 4.079970 TCTGAACGGAGTGAGTAACAGAT 58.920 43.478 0.00 0.00 45.00 2.90
595 600 6.377429 TCTGAACGGAGTGAGTAACAGATAAT 59.623 38.462 0.00 0.00 45.00 1.28
597 602 8.234136 TGAACGGAGTGAGTAACAGATAATAT 57.766 34.615 0.00 0.00 45.00 1.28
598 603 8.692710 TGAACGGAGTGAGTAACAGATAATATT 58.307 33.333 0.00 0.00 45.00 1.28
599 604 9.530633 GAACGGAGTGAGTAACAGATAATATTT 57.469 33.333 0.00 0.00 45.00 1.40
600 605 9.530633 AACGGAGTGAGTAACAGATAATATTTC 57.469 33.333 0.00 0.00 45.00 2.17
601 606 8.142551 ACGGAGTGAGTAACAGATAATATTTCC 58.857 37.037 0.00 0.00 42.51 3.13
602 607 8.361139 CGGAGTGAGTAACAGATAATATTTCCT 58.639 37.037 0.00 0.00 0.00 3.36
675 681 3.130160 TGCACACACGCACAGCAA 61.130 55.556 0.00 0.00 36.86 3.91
885 896 2.028484 TATAAAGCGCGGGCCTCG 59.972 61.111 22.01 12.39 41.24 4.63
1030 1050 1.383664 ATGGAGGAGGCTGCTGCTA 60.384 57.895 26.27 14.25 39.59 3.49
1031 1051 0.984961 ATGGAGGAGGCTGCTGCTAA 60.985 55.000 26.27 9.45 39.59 3.09
1099 1122 3.006247 GAGAAGGTTGATGAGGTGAAGC 58.994 50.000 0.00 0.00 0.00 3.86
1164 1277 1.889530 CGAAGAAGGCGGAGGAAGGT 61.890 60.000 0.00 0.00 0.00 3.50
1180 1293 1.059913 AGGTGGTGAGGTGAAGAAGG 58.940 55.000 0.00 0.00 0.00 3.46
1263 1391 0.809385 CCTACTTCGAGGTGAGCGAA 59.191 55.000 10.91 0.00 44.48 4.70
1269 1400 0.889638 TCGAGGTGAGCGAACTCTGT 60.890 55.000 2.81 0.00 43.85 3.41
1284 1415 5.518128 CGAACTCTGTCCTGATGTGATTAAG 59.482 44.000 0.00 0.00 0.00 1.85
1291 1422 3.386726 TCCTGATGTGATTAAGGTACGGG 59.613 47.826 0.00 0.00 0.00 5.28
1296 1427 3.028850 TGTGATTAAGGTACGGGAGGAG 58.971 50.000 0.00 0.00 0.00 3.69
1302 1433 0.408700 AGGTACGGGAGGAGTTCAGT 59.591 55.000 0.00 0.00 0.00 3.41
1303 1434 0.816373 GGTACGGGAGGAGTTCAGTC 59.184 60.000 0.00 0.00 0.00 3.51
1327 1458 7.589221 GTCTTTGTGTTGAGTTCTGAAATGATC 59.411 37.037 0.00 0.00 0.00 2.92
1328 1459 7.500227 TCTTTGTGTTGAGTTCTGAAATGATCT 59.500 33.333 0.00 0.00 0.00 2.75
1329 1460 7.572523 TTGTGTTGAGTTCTGAAATGATCTT 57.427 32.000 0.00 0.00 0.00 2.40
1330 1461 7.572523 TGTGTTGAGTTCTGAAATGATCTTT 57.427 32.000 0.00 0.00 0.00 2.52
1331 1462 7.642669 TGTGTTGAGTTCTGAAATGATCTTTC 58.357 34.615 0.00 9.42 0.00 2.62
1332 1463 7.500227 TGTGTTGAGTTCTGAAATGATCTTTCT 59.500 33.333 14.59 0.43 0.00 2.52
1333 1464 7.802251 GTGTTGAGTTCTGAAATGATCTTTCTG 59.198 37.037 14.59 13.98 0.00 3.02
1334 1465 7.500227 TGTTGAGTTCTGAAATGATCTTTCTGT 59.500 33.333 14.59 4.03 0.00 3.41
1335 1466 7.430992 TGAGTTCTGAAATGATCTTTCTGTG 57.569 36.000 14.59 8.23 0.00 3.66
1336 1467 6.994496 TGAGTTCTGAAATGATCTTTCTGTGT 59.006 34.615 14.59 7.11 0.00 3.72
1338 1469 6.994496 AGTTCTGAAATGATCTTTCTGTGTGA 59.006 34.615 14.59 6.54 0.00 3.58
1745 1953 3.757461 GCCCTGTCCCCTGTACATATCTA 60.757 52.174 0.00 0.00 0.00 1.98
1787 2011 2.202623 GGCACGTTCGATCGAGCT 60.203 61.111 28.44 12.85 44.16 4.09
1789 2013 2.560151 GCACGTTCGATCGAGCTCG 61.560 63.158 30.03 30.03 42.22 5.03
1806 2030 5.593010 GAGCTCGGTGTTCTGTAAATATCT 58.407 41.667 0.00 0.00 0.00 1.98
1821 2045 0.889994 TATCTACCCGTGTGCGTGTT 59.110 50.000 0.00 0.00 36.15 3.32
1824 2048 0.233848 CTACCCGTGTGCGTGTTTTC 59.766 55.000 0.00 0.00 36.15 2.29
1849 2076 1.258982 CAATAATGGCGCTCTCGTGTC 59.741 52.381 7.64 0.00 38.14 3.67
1900 2127 1.604593 GGTGAATGTGGCTGTGGCT 60.605 57.895 0.00 0.00 38.73 4.75
1907 2134 1.080298 GTGGCTGTGGCTGCAAATC 60.080 57.895 0.50 0.00 38.73 2.17
1908 2135 1.228644 TGGCTGTGGCTGCAAATCT 60.229 52.632 0.50 0.00 38.73 2.40
1909 2136 0.828762 TGGCTGTGGCTGCAAATCTT 60.829 50.000 0.50 0.00 38.73 2.40
1931 2158 1.347378 TGCAAGACTGATGCCTGTACA 59.653 47.619 0.00 0.00 43.16 2.90
1942 2170 2.786777 TGCCTGTACAACTCGTCTCTA 58.213 47.619 0.00 0.00 0.00 2.43
1984 2212 1.918800 CCCCTCTCCGGTTTCTGGT 60.919 63.158 0.00 0.00 0.00 4.00
2050 2278 2.381911 CAATCCAAGGATCTTGTGGGG 58.618 52.381 1.37 0.00 33.08 4.96
2054 2282 0.622665 CAAGGATCTTGTGGGGAGCT 59.377 55.000 0.00 0.00 0.00 4.09
2055 2283 0.915364 AAGGATCTTGTGGGGAGCTC 59.085 55.000 4.71 4.71 0.00 4.09
2056 2284 0.252881 AGGATCTTGTGGGGAGCTCA 60.253 55.000 17.19 0.00 0.00 4.26
2058 2286 1.476471 GGATCTTGTGGGGAGCTCATG 60.476 57.143 17.19 0.00 0.00 3.07
2059 2287 1.211457 GATCTTGTGGGGAGCTCATGT 59.789 52.381 17.19 0.00 0.00 3.21
2060 2288 0.615331 TCTTGTGGGGAGCTCATGTC 59.385 55.000 17.19 3.76 0.00 3.06
2061 2289 0.617413 CTTGTGGGGAGCTCATGTCT 59.383 55.000 17.19 0.00 0.00 3.41
2062 2290 1.004044 CTTGTGGGGAGCTCATGTCTT 59.996 52.381 17.19 0.00 0.00 3.01
2065 2293 0.547471 TGGGGAGCTCATGTCTTGGA 60.547 55.000 17.19 0.00 0.00 3.53
2066 2294 0.620556 GGGGAGCTCATGTCTTGGAA 59.379 55.000 17.19 0.00 0.00 3.53
2067 2295 1.407989 GGGGAGCTCATGTCTTGGAAG 60.408 57.143 17.19 0.00 0.00 3.46
2068 2296 1.556911 GGGAGCTCATGTCTTGGAAGA 59.443 52.381 17.19 0.00 0.00 2.87
2069 2297 2.419851 GGGAGCTCATGTCTTGGAAGAG 60.420 54.545 17.19 0.00 35.32 2.85
2074 2302 3.672808 CTCATGTCTTGGAAGAGCAAGT 58.327 45.455 0.00 0.00 35.32 3.16
2075 2303 4.825422 CTCATGTCTTGGAAGAGCAAGTA 58.175 43.478 0.00 0.00 35.32 2.24
2076 2304 4.825422 TCATGTCTTGGAAGAGCAAGTAG 58.175 43.478 0.00 0.00 35.32 2.57
2077 2305 4.528206 TCATGTCTTGGAAGAGCAAGTAGA 59.472 41.667 0.00 0.00 35.32 2.59
2078 2306 4.258702 TGTCTTGGAAGAGCAAGTAGAC 57.741 45.455 0.00 0.00 35.32 2.59
2079 2307 3.246619 GTCTTGGAAGAGCAAGTAGACG 58.753 50.000 0.00 0.00 35.32 4.18
2080 2308 3.057456 GTCTTGGAAGAGCAAGTAGACGA 60.057 47.826 0.00 0.00 35.32 4.20
2081 2309 3.764434 TCTTGGAAGAGCAAGTAGACGAT 59.236 43.478 0.00 0.00 0.00 3.73
2082 2310 4.220821 TCTTGGAAGAGCAAGTAGACGATT 59.779 41.667 0.00 0.00 0.00 3.34
2083 2311 4.111375 TGGAAGAGCAAGTAGACGATTC 57.889 45.455 0.00 0.00 0.00 2.52
2084 2312 3.119101 TGGAAGAGCAAGTAGACGATTCC 60.119 47.826 0.00 0.00 36.37 3.01
2085 2313 3.131400 GGAAGAGCAAGTAGACGATTCCT 59.869 47.826 0.00 0.00 33.69 3.36
2086 2314 4.382147 GGAAGAGCAAGTAGACGATTCCTT 60.382 45.833 0.00 0.00 33.69 3.36
2087 2315 5.163540 GGAAGAGCAAGTAGACGATTCCTTA 60.164 44.000 0.00 0.00 33.69 2.69
2088 2316 5.916661 AGAGCAAGTAGACGATTCCTTAA 57.083 39.130 0.00 0.00 0.00 1.85
2089 2317 6.282199 AGAGCAAGTAGACGATTCCTTAAA 57.718 37.500 0.00 0.00 0.00 1.52
2090 2318 6.698380 AGAGCAAGTAGACGATTCCTTAAAA 58.302 36.000 0.00 0.00 0.00 1.52
2091 2319 7.159372 AGAGCAAGTAGACGATTCCTTAAAAA 58.841 34.615 0.00 0.00 0.00 1.94
2092 2320 7.117956 AGAGCAAGTAGACGATTCCTTAAAAAC 59.882 37.037 0.00 0.00 0.00 2.43
2093 2321 6.708949 AGCAAGTAGACGATTCCTTAAAAACA 59.291 34.615 0.00 0.00 0.00 2.83
2094 2322 7.227910 AGCAAGTAGACGATTCCTTAAAAACAA 59.772 33.333 0.00 0.00 0.00 2.83
2096 2324 7.430992 AGTAGACGATTCCTTAAAAACAACC 57.569 36.000 0.00 0.00 0.00 3.77
2097 2325 5.700722 AGACGATTCCTTAAAAACAACCC 57.299 39.130 0.00 0.00 0.00 4.11
2099 2327 5.595133 AGACGATTCCTTAAAAACAACCCAA 59.405 36.000 0.00 0.00 0.00 4.12
2100 2328 5.593968 ACGATTCCTTAAAAACAACCCAAC 58.406 37.500 0.00 0.00 0.00 3.77
2101 2329 5.127356 ACGATTCCTTAAAAACAACCCAACA 59.873 36.000 0.00 0.00 0.00 3.33
2103 2331 6.364976 CGATTCCTTAAAAACAACCCAACATC 59.635 38.462 0.00 0.00 0.00 3.06
2104 2332 6.546428 TTCCTTAAAAACAACCCAACATCA 57.454 33.333 0.00 0.00 0.00 3.07
2107 2335 6.040391 TCCTTAAAAACAACCCAACATCAGAG 59.960 38.462 0.00 0.00 0.00 3.35
2108 2336 3.733443 AAAACAACCCAACATCAGAGC 57.267 42.857 0.00 0.00 0.00 4.09
2109 2337 2.363306 AACAACCCAACATCAGAGCA 57.637 45.000 0.00 0.00 0.00 4.26
2110 2338 1.901591 ACAACCCAACATCAGAGCAG 58.098 50.000 0.00 0.00 0.00 4.24
2112 2340 0.403271 AACCCAACATCAGAGCAGCT 59.597 50.000 0.00 0.00 0.00 4.24
2113 2341 0.035630 ACCCAACATCAGAGCAGCTC 60.036 55.000 15.25 15.25 0.00 4.09
2115 2343 1.703438 CCAACATCAGAGCAGCTCGC 61.703 60.000 16.99 0.00 42.91 5.03
2116 2344 1.017701 CAACATCAGAGCAGCTCGCA 61.018 55.000 16.99 7.76 46.13 5.10
2117 2345 0.321034 AACATCAGAGCAGCTCGCAA 60.321 50.000 16.99 6.82 46.13 4.85
2118 2346 0.321034 ACATCAGAGCAGCTCGCAAA 60.321 50.000 16.99 4.29 46.13 3.68
2120 2348 1.400846 CATCAGAGCAGCTCGCAAATT 59.599 47.619 16.99 0.00 46.13 1.82
2121 2349 1.527034 TCAGAGCAGCTCGCAAATTT 58.473 45.000 16.99 0.00 46.13 1.82
2123 2351 2.294233 TCAGAGCAGCTCGCAAATTTTT 59.706 40.909 16.99 0.00 46.13 1.94
2152 3641 2.156098 CCGCTAGGGATCAGACTACTC 58.844 57.143 8.65 0.00 38.47 2.59
2156 3645 3.761752 GCTAGGGATCAGACTACTCATCC 59.238 52.174 0.00 0.00 35.01 3.51
2171 3660 4.415596 ACTCATCCTAGCTTCCTATCAGG 58.584 47.826 0.00 0.00 36.46 3.86
2176 3665 1.001860 CTAGCTTCCTATCAGGCCAGC 59.998 57.143 5.01 1.61 40.03 4.85
2197 3686 1.508088 CAAGCCGTTGGATGGAAGC 59.492 57.895 0.00 0.00 0.00 3.86
2198 3687 0.962356 CAAGCCGTTGGATGGAAGCT 60.962 55.000 0.00 0.00 0.00 3.74
2199 3688 0.678048 AAGCCGTTGGATGGAAGCTC 60.678 55.000 0.00 0.00 0.00 4.09
2219 3708 2.100087 TCGTATAGCCGTTGAATGAGCA 59.900 45.455 0.00 0.00 0.00 4.26
2220 3709 2.472861 CGTATAGCCGTTGAATGAGCAG 59.527 50.000 0.00 0.00 0.00 4.24
2249 3738 0.168788 CGCACACGCAGAATCCAAAT 59.831 50.000 0.00 0.00 38.40 2.32
2260 3749 6.155827 CGCAGAATCCAAATTTAAAACCTGA 58.844 36.000 11.05 0.00 0.00 3.86
2262 3751 6.368791 GCAGAATCCAAATTTAAAACCTGACC 59.631 38.462 11.05 0.00 0.00 4.02
2274 3784 2.865343 ACCTGACCGAGCTAATTACG 57.135 50.000 0.00 0.00 0.00 3.18
2353 3863 5.189736 TGGACGGTAAGGAGAGTAGTAACTA 59.810 44.000 0.00 0.00 35.56 2.24
2354 3864 5.525745 GGACGGTAAGGAGAGTAGTAACTAC 59.474 48.000 0.00 0.00 35.56 2.73
2356 3866 6.476378 ACGGTAAGGAGAGTAGTAACTACAA 58.524 40.000 0.00 0.00 39.22 2.41
2446 3956 2.229792 TGCTTCCGAATGAACTGCTTT 58.770 42.857 0.00 0.00 0.00 3.51
2456 3966 5.620654 CGAATGAACTGCTTTGATGTGGATT 60.621 40.000 0.00 0.00 0.00 3.01
2509 4020 5.804944 TTCCATCAATTGGTGAACACAAT 57.195 34.783 20.50 0.00 46.52 2.71
2559 4070 8.603181 GTTTCAAAAACATCACAATACTGCTTT 58.397 29.630 0.00 0.00 0.00 3.51
2563 4074 6.389830 AAACATCACAATACTGCTTTCACA 57.610 33.333 0.00 0.00 0.00 3.58
2590 4104 3.903090 ACAAAAATCCTTGCTTCCATGGA 59.097 39.130 11.44 11.44 45.88 3.41
2603 4117 4.807304 GCTTCCATGGATGTAAGCATTTTG 59.193 41.667 24.96 0.00 45.54 2.44
2604 4118 5.625197 GCTTCCATGGATGTAAGCATTTTGT 60.625 40.000 24.96 0.00 45.54 2.83
2615 4129 8.830201 ATGTAAGCATTTTGTTTTAGCAATGA 57.170 26.923 0.00 0.00 29.54 2.57
2619 4133 6.661669 AGCATTTTGTTTTAGCAATGAAAGC 58.338 32.000 0.00 0.00 0.00 3.51
2623 4137 3.637432 TGTTTTAGCAATGAAAGCACCG 58.363 40.909 0.00 0.00 0.00 4.94
2629 4143 3.123050 AGCAATGAAAGCACCGTTTTTC 58.877 40.909 0.00 0.33 34.64 2.29
2646 4160 5.106475 CGTTTTTCGGAAACAATCCCTGATA 60.106 40.000 1.96 0.00 46.39 2.15
2647 4161 6.568844 CGTTTTTCGGAAACAATCCCTGATAA 60.569 38.462 1.96 0.00 46.39 1.75
2648 4162 5.890424 TTTCGGAAACAATCCCTGATAAC 57.110 39.130 0.00 0.00 46.39 1.89
2685 4199 5.583854 TCTCGTCTATTCTTACTGTTAGCGT 59.416 40.000 0.00 0.00 0.00 5.07
2689 4203 5.805994 GTCTATTCTTACTGTTAGCGTTGCT 59.194 40.000 0.00 0.00 43.41 3.91
2698 4212 6.737254 ACTGTTAGCGTTGCTTGTAATTAT 57.263 33.333 0.00 0.00 40.44 1.28
2702 4216 2.099098 AGCGTTGCTTGTAATTATGGGC 59.901 45.455 0.00 0.00 33.89 5.36
2703 4217 2.798145 GCGTTGCTTGTAATTATGGGCC 60.798 50.000 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
465 470 1.333177 GCCCGTGAGACTATGGATCT 58.667 55.000 0.00 0.00 0.00 2.75
472 477 2.922740 AAAGTTTGCCCGTGAGACTA 57.077 45.000 0.00 0.00 0.00 2.59
473 478 1.947456 GAAAAGTTTGCCCGTGAGACT 59.053 47.619 0.00 0.00 0.00 3.24
475 480 1.946768 CTGAAAAGTTTGCCCGTGAGA 59.053 47.619 0.00 0.00 0.00 3.27
500 505 2.100584 TGTGAAAATGAACTGGTGGTGC 59.899 45.455 0.00 0.00 0.00 5.01
540 545 6.524101 AAAAACTTGTCCTAAGCTTGTTCA 57.476 33.333 9.86 0.32 0.00 3.18
560 565 5.909477 TCACTCCGTTCAGAGTTAGAAAAA 58.091 37.500 0.00 0.00 44.83 1.94
561 566 5.068723 ACTCACTCCGTTCAGAGTTAGAAAA 59.931 40.000 9.27 0.00 44.83 2.29
564 569 3.752665 ACTCACTCCGTTCAGAGTTAGA 58.247 45.455 9.27 0.00 44.83 2.10
565 570 5.048921 TGTTACTCACTCCGTTCAGAGTTAG 60.049 44.000 0.00 2.20 44.83 2.34
566 571 4.823442 TGTTACTCACTCCGTTCAGAGTTA 59.177 41.667 0.00 0.00 44.83 2.24
567 572 3.635373 TGTTACTCACTCCGTTCAGAGTT 59.365 43.478 0.00 0.00 44.83 3.01
569 574 3.502595 TCTGTTACTCACTCCGTTCAGAG 59.497 47.826 0.00 0.00 39.91 3.35
571 576 3.917329 TCTGTTACTCACTCCGTTCAG 57.083 47.619 0.00 0.00 0.00 3.02
573 578 9.530633 AAATATTATCTGTTACTCACTCCGTTC 57.469 33.333 0.00 0.00 0.00 3.95
574 579 9.530633 GAAATATTATCTGTTACTCACTCCGTT 57.469 33.333 0.00 0.00 0.00 4.44
575 580 8.142551 GGAAATATTATCTGTTACTCACTCCGT 58.857 37.037 0.00 0.00 0.00 4.69
576 581 8.361139 AGGAAATATTATCTGTTACTCACTCCG 58.639 37.037 0.00 0.00 0.00 4.63
592 597 9.841295 GGGTGATGTAAGTGTTAGGAAATATTA 57.159 33.333 0.00 0.00 0.00 0.98
595 600 7.260387 TGGGTGATGTAAGTGTTAGGAAATA 57.740 36.000 0.00 0.00 0.00 1.40
597 602 5.570205 TGGGTGATGTAAGTGTTAGGAAA 57.430 39.130 0.00 0.00 0.00 3.13
598 603 5.625886 CGATGGGTGATGTAAGTGTTAGGAA 60.626 44.000 0.00 0.00 0.00 3.36
599 604 4.142026 CGATGGGTGATGTAAGTGTTAGGA 60.142 45.833 0.00 0.00 0.00 2.94
600 605 4.119862 CGATGGGTGATGTAAGTGTTAGG 58.880 47.826 0.00 0.00 0.00 2.69
601 606 3.555956 GCGATGGGTGATGTAAGTGTTAG 59.444 47.826 0.00 0.00 0.00 2.34
602 607 3.527533 GCGATGGGTGATGTAAGTGTTA 58.472 45.455 0.00 0.00 0.00 2.41
603 608 2.356135 GCGATGGGTGATGTAAGTGTT 58.644 47.619 0.00 0.00 0.00 3.32
604 609 1.406887 GGCGATGGGTGATGTAAGTGT 60.407 52.381 0.00 0.00 0.00 3.55
605 610 1.299541 GGCGATGGGTGATGTAAGTG 58.700 55.000 0.00 0.00 0.00 3.16
606 611 0.908910 TGGCGATGGGTGATGTAAGT 59.091 50.000 0.00 0.00 0.00 2.24
649 655 3.625232 GTGTGTGCACGATCGTGT 58.375 55.556 39.58 11.30 46.90 4.49
713 723 0.317854 GTGCTTCTGTGTTTTCCGGC 60.318 55.000 0.00 0.00 0.00 6.13
970 988 0.912006 AGAGCACCTCCCCCTCTTTC 60.912 60.000 0.00 0.00 32.27 2.62
971 989 1.162085 AGAGCACCTCCCCCTCTTT 59.838 57.895 0.00 0.00 32.27 2.52
974 992 3.791586 GCAGAGCACCTCCCCCTC 61.792 72.222 0.00 0.00 0.00 4.30
976 994 3.334054 AAGCAGAGCACCTCCCCC 61.334 66.667 0.00 0.00 0.00 5.40
1164 1277 1.371183 CGCCTTCTTCACCTCACCA 59.629 57.895 0.00 0.00 0.00 4.17
1180 1293 3.157949 CTTCTCCTCCCCCTCCGC 61.158 72.222 0.00 0.00 0.00 5.54
1263 1391 4.780021 ACCTTAATCACATCAGGACAGAGT 59.220 41.667 0.00 0.00 0.00 3.24
1269 1400 3.386726 CCCGTACCTTAATCACATCAGGA 59.613 47.826 0.00 0.00 0.00 3.86
1284 1415 0.816373 GACTGAACTCCTCCCGTACC 59.184 60.000 0.00 0.00 0.00 3.34
1291 1422 4.442706 TCAACACAAAGACTGAACTCCTC 58.557 43.478 0.00 0.00 0.00 3.71
1296 1427 5.351465 TCAGAACTCAACACAAAGACTGAAC 59.649 40.000 0.00 0.00 31.99 3.18
1302 1433 7.500227 AGATCATTTCAGAACTCAACACAAAGA 59.500 33.333 0.00 0.00 0.00 2.52
1303 1434 7.646314 AGATCATTTCAGAACTCAACACAAAG 58.354 34.615 0.00 0.00 0.00 2.77
1327 1458 5.936372 TCCTTGATCATCTTCACACAGAAAG 59.064 40.000 0.00 0.00 35.40 2.62
1328 1459 5.868454 TCCTTGATCATCTTCACACAGAAA 58.132 37.500 0.00 0.00 35.40 2.52
1329 1460 5.485620 CTCCTTGATCATCTTCACACAGAA 58.514 41.667 0.00 0.00 34.41 3.02
1330 1461 4.081254 CCTCCTTGATCATCTTCACACAGA 60.081 45.833 0.00 0.00 0.00 3.41
1331 1462 4.190001 CCTCCTTGATCATCTTCACACAG 58.810 47.826 0.00 0.00 0.00 3.66
1332 1463 3.620719 GCCTCCTTGATCATCTTCACACA 60.621 47.826 0.00 0.00 0.00 3.72
1333 1464 2.941720 GCCTCCTTGATCATCTTCACAC 59.058 50.000 0.00 0.00 0.00 3.82
1334 1465 2.419159 CGCCTCCTTGATCATCTTCACA 60.419 50.000 0.00 0.00 0.00 3.58
1335 1466 2.159043 TCGCCTCCTTGATCATCTTCAC 60.159 50.000 0.00 0.00 0.00 3.18
1336 1467 2.110578 TCGCCTCCTTGATCATCTTCA 58.889 47.619 0.00 0.00 0.00 3.02
1338 1469 2.702478 TGATCGCCTCCTTGATCATCTT 59.298 45.455 0.00 0.00 44.41 2.40
1532 1683 2.036731 TTCTTCTCCTCGGCGGGA 59.963 61.111 9.18 12.86 0.00 5.14
1769 1993 3.255379 GCTCGATCGAACGTGCCC 61.255 66.667 25.48 5.21 43.63 5.36
1787 2011 5.221106 CGGGTAGATATTTACAGAACACCGA 60.221 44.000 9.49 0.00 37.43 4.69
1789 2013 5.751990 CACGGGTAGATATTTACAGAACACC 59.248 44.000 5.83 0.00 0.00 4.16
1821 2045 2.010582 GCGCCATTATTGCCGGGAAA 62.011 55.000 14.07 0.00 0.00 3.13
1824 2048 2.906897 AGCGCCATTATTGCCGGG 60.907 61.111 2.29 0.00 0.00 5.73
1858 2085 1.227089 CTCCTTCCTCGCGTCCATG 60.227 63.158 5.77 0.00 0.00 3.66
1907 2134 1.738350 CAGGCATCAGTCTTGCAGAAG 59.262 52.381 0.00 0.00 41.95 2.85
1908 2135 1.072806 ACAGGCATCAGTCTTGCAGAA 59.927 47.619 0.00 0.00 41.95 3.02
1909 2136 0.689055 ACAGGCATCAGTCTTGCAGA 59.311 50.000 0.00 0.00 41.95 4.26
1931 2158 5.644977 TGATCACAACATAGAGACGAGTT 57.355 39.130 0.00 0.00 0.00 3.01
1942 2170 2.943690 GAGCAGAGCATGATCACAACAT 59.056 45.455 14.38 0.00 44.02 2.71
1984 2212 1.282738 GTTCCCCCTACCAATCGGAAA 59.717 52.381 0.00 0.00 34.50 3.13
2050 2278 2.278854 GCTCTTCCAAGACATGAGCTC 58.721 52.381 6.82 6.82 44.52 4.09
2054 2282 3.777106 ACTTGCTCTTCCAAGACATGA 57.223 42.857 0.00 0.00 43.79 3.07
2055 2283 4.629200 GTCTACTTGCTCTTCCAAGACATG 59.371 45.833 8.71 0.00 43.79 3.21
2056 2284 4.619394 CGTCTACTTGCTCTTCCAAGACAT 60.619 45.833 8.71 0.00 43.79 3.06
2058 2286 3.057456 TCGTCTACTTGCTCTTCCAAGAC 60.057 47.826 8.71 0.00 43.79 3.01
2059 2287 3.154710 TCGTCTACTTGCTCTTCCAAGA 58.845 45.455 8.71 0.00 43.79 3.02
2060 2288 3.577649 TCGTCTACTTGCTCTTCCAAG 57.422 47.619 0.72 0.72 45.90 3.61
2061 2289 4.495422 GAATCGTCTACTTGCTCTTCCAA 58.505 43.478 0.00 0.00 0.00 3.53
2062 2290 3.119101 GGAATCGTCTACTTGCTCTTCCA 60.119 47.826 0.00 0.00 32.90 3.53
2065 2293 4.810191 AAGGAATCGTCTACTTGCTCTT 57.190 40.909 0.00 0.00 0.00 2.85
2066 2294 5.916661 TTAAGGAATCGTCTACTTGCTCT 57.083 39.130 0.00 0.00 0.00 4.09
2067 2295 6.963049 TTTTAAGGAATCGTCTACTTGCTC 57.037 37.500 0.00 0.00 0.00 4.26
2068 2296 6.708949 TGTTTTTAAGGAATCGTCTACTTGCT 59.291 34.615 0.00 0.00 0.00 3.91
2069 2297 6.894828 TGTTTTTAAGGAATCGTCTACTTGC 58.105 36.000 0.00 0.00 0.00 4.01
2070 2298 7.801783 GGTTGTTTTTAAGGAATCGTCTACTTG 59.198 37.037 0.00 0.00 0.00 3.16
2071 2299 7.040892 GGGTTGTTTTTAAGGAATCGTCTACTT 60.041 37.037 0.00 0.00 0.00 2.24
2073 2301 6.205270 TGGGTTGTTTTTAAGGAATCGTCTAC 59.795 38.462 0.00 0.00 0.00 2.59
2074 2302 6.297582 TGGGTTGTTTTTAAGGAATCGTCTA 58.702 36.000 0.00 0.00 0.00 2.59
2075 2303 5.134661 TGGGTTGTTTTTAAGGAATCGTCT 58.865 37.500 0.00 0.00 0.00 4.18
2076 2304 5.441709 TGGGTTGTTTTTAAGGAATCGTC 57.558 39.130 0.00 0.00 0.00 4.20
2077 2305 5.127356 TGTTGGGTTGTTTTTAAGGAATCGT 59.873 36.000 0.00 0.00 0.00 3.73
2078 2306 5.593010 TGTTGGGTTGTTTTTAAGGAATCG 58.407 37.500 0.00 0.00 0.00 3.34
2079 2307 7.213678 TGATGTTGGGTTGTTTTTAAGGAATC 58.786 34.615 0.00 0.00 0.00 2.52
2080 2308 7.070571 TCTGATGTTGGGTTGTTTTTAAGGAAT 59.929 33.333 0.00 0.00 0.00 3.01
2081 2309 6.381420 TCTGATGTTGGGTTGTTTTTAAGGAA 59.619 34.615 0.00 0.00 0.00 3.36
2082 2310 5.894393 TCTGATGTTGGGTTGTTTTTAAGGA 59.106 36.000 0.00 0.00 0.00 3.36
2083 2311 6.155475 TCTGATGTTGGGTTGTTTTTAAGG 57.845 37.500 0.00 0.00 0.00 2.69
2084 2312 5.691754 GCTCTGATGTTGGGTTGTTTTTAAG 59.308 40.000 0.00 0.00 0.00 1.85
2085 2313 5.127845 TGCTCTGATGTTGGGTTGTTTTTAA 59.872 36.000 0.00 0.00 0.00 1.52
2086 2314 4.646945 TGCTCTGATGTTGGGTTGTTTTTA 59.353 37.500 0.00 0.00 0.00 1.52
2087 2315 3.450457 TGCTCTGATGTTGGGTTGTTTTT 59.550 39.130 0.00 0.00 0.00 1.94
2088 2316 3.030291 TGCTCTGATGTTGGGTTGTTTT 58.970 40.909 0.00 0.00 0.00 2.43
2089 2317 2.624838 CTGCTCTGATGTTGGGTTGTTT 59.375 45.455 0.00 0.00 0.00 2.83
2090 2318 2.233271 CTGCTCTGATGTTGGGTTGTT 58.767 47.619 0.00 0.00 0.00 2.83
2091 2319 1.901591 CTGCTCTGATGTTGGGTTGT 58.098 50.000 0.00 0.00 0.00 3.32
2092 2320 0.524862 GCTGCTCTGATGTTGGGTTG 59.475 55.000 0.00 0.00 0.00 3.77
2093 2321 0.403271 AGCTGCTCTGATGTTGGGTT 59.597 50.000 0.00 0.00 0.00 4.11
2094 2322 0.035630 GAGCTGCTCTGATGTTGGGT 60.036 55.000 21.93 0.00 0.00 4.51
2096 2324 1.703438 GCGAGCTGCTCTGATGTTGG 61.703 60.000 25.59 9.89 41.73 3.77
2097 2325 1.017701 TGCGAGCTGCTCTGATGTTG 61.018 55.000 25.59 10.58 46.63 3.33
2099 2327 0.321034 TTTGCGAGCTGCTCTGATGT 60.321 50.000 25.59 0.00 46.63 3.06
2100 2328 1.015109 ATTTGCGAGCTGCTCTGATG 58.985 50.000 25.59 12.30 46.63 3.07
2101 2329 1.747709 AATTTGCGAGCTGCTCTGAT 58.252 45.000 25.59 11.86 46.63 2.90
2103 2331 2.342910 AAAATTTGCGAGCTGCTCTG 57.657 45.000 25.59 19.41 46.63 3.35
2120 2348 4.829872 TCCCTAGCGGTTCTCATAAAAA 57.170 40.909 0.00 0.00 0.00 1.94
2121 2349 4.407621 TGATCCCTAGCGGTTCTCATAAAA 59.592 41.667 0.00 0.00 32.26 1.52
2123 2351 3.572642 TGATCCCTAGCGGTTCTCATAA 58.427 45.455 0.00 0.00 32.26 1.90
2124 2352 3.157881 CTGATCCCTAGCGGTTCTCATA 58.842 50.000 0.00 0.00 32.26 2.15
2127 2355 1.338655 GTCTGATCCCTAGCGGTTCTC 59.661 57.143 0.00 0.00 32.26 2.87
2128 2356 1.063567 AGTCTGATCCCTAGCGGTTCT 60.064 52.381 0.00 0.00 32.26 3.01
2130 2358 2.091775 AGTAGTCTGATCCCTAGCGGTT 60.092 50.000 0.00 0.00 0.00 4.44
2131 2359 1.495574 AGTAGTCTGATCCCTAGCGGT 59.504 52.381 0.00 0.00 0.00 5.68
2132 2360 2.156098 GAGTAGTCTGATCCCTAGCGG 58.844 57.143 0.00 0.00 0.00 5.52
2152 3641 2.235898 GGCCTGATAGGAAGCTAGGATG 59.764 54.545 0.00 0.00 37.67 3.51
2156 3645 1.001860 GCTGGCCTGATAGGAAGCTAG 59.998 57.143 14.77 0.00 41.02 3.42
2176 3665 1.243342 TTCCATCCAACGGCTTGCTG 61.243 55.000 0.00 0.00 0.00 4.41
2197 3686 2.726760 GCTCATTCAACGGCTATACGAG 59.273 50.000 0.00 0.00 37.61 4.18
2198 3687 2.100087 TGCTCATTCAACGGCTATACGA 59.900 45.455 0.00 0.00 37.61 3.43
2199 3688 2.469826 TGCTCATTCAACGGCTATACG 58.530 47.619 0.00 0.00 40.31 3.06
2209 3698 1.304381 GGGGCCACTGCTCATTCAA 60.304 57.895 4.39 0.00 40.96 2.69
2211 3700 1.751927 CAGGGGCCACTGCTCATTC 60.752 63.158 25.05 0.00 40.96 2.67
2212 3701 2.357836 CAGGGGCCACTGCTCATT 59.642 61.111 25.05 0.00 40.96 2.57
2241 3730 6.658188 TCGGTCAGGTTTTAAATTTGGATT 57.342 33.333 0.00 0.00 0.00 3.01
2242 3731 5.336451 GCTCGGTCAGGTTTTAAATTTGGAT 60.336 40.000 0.00 0.00 0.00 3.41
2245 3734 5.121221 AGCTCGGTCAGGTTTTAAATTTG 57.879 39.130 0.00 0.00 0.00 2.32
2249 3738 6.091169 CGTAATTAGCTCGGTCAGGTTTTAAA 59.909 38.462 0.00 0.00 33.71 1.52
2260 3749 1.098050 ACGGACGTAATTAGCTCGGT 58.902 50.000 0.00 0.00 0.00 4.69
2262 3751 5.878261 AAATAACGGACGTAATTAGCTCG 57.122 39.130 0.00 0.00 0.00 5.03
2295 3805 9.639563 TTGGCTAAATATATGGAAGACATTGAA 57.360 29.630 0.00 0.00 41.03 2.69
2329 3839 4.018960 AGTTACTACTCTCCTTACCGTCCA 60.019 45.833 0.00 0.00 0.00 4.02
2356 3866 4.335400 ACCTCGTTCAATGCCAATTTTT 57.665 36.364 0.00 0.00 0.00 1.94
2362 3872 5.449862 GCAAATTATACCTCGTTCAATGCCA 60.450 40.000 0.00 0.00 0.00 4.92
2370 3880 1.944709 GGCCGCAAATTATACCTCGTT 59.055 47.619 0.00 0.00 0.00 3.85
2374 3884 4.159244 TGTAAGGCCGCAAATTATACCT 57.841 40.909 0.00 0.00 0.00 3.08
2415 3925 8.237267 AGTTCATTCGGAAGCAAAACTAAATAG 58.763 33.333 0.00 0.00 35.82 1.73
2420 3930 4.320202 GCAGTTCATTCGGAAGCAAAACTA 60.320 41.667 0.00 0.00 35.82 2.24
2436 3946 5.534207 AAAATCCACATCAAAGCAGTTCA 57.466 34.783 0.00 0.00 0.00 3.18
2464 3975 7.903431 GGAAACATAAATTACAGCGTGTAAGAG 59.097 37.037 13.41 6.55 44.89 2.85
2537 4048 7.222417 TGTGAAAGCAGTATTGTGATGTTTTTG 59.778 33.333 0.00 0.00 29.15 2.44
2542 4053 6.389830 TTTGTGAAAGCAGTATTGTGATGT 57.610 33.333 0.00 0.00 0.00 3.06
2575 4086 3.889815 CTTACATCCATGGAAGCAAGGA 58.110 45.455 20.67 0.14 41.43 3.36
2590 4104 8.830201 TCATTGCTAAAACAAAATGCTTACAT 57.170 26.923 0.00 0.00 38.49 2.29
2593 4107 8.281893 GCTTTCATTGCTAAAACAAAATGCTTA 58.718 29.630 0.00 0.00 32.27 3.09
2603 4117 3.638484 ACGGTGCTTTCATTGCTAAAAC 58.362 40.909 0.00 0.00 0.00 2.43
2604 4118 4.314740 AACGGTGCTTTCATTGCTAAAA 57.685 36.364 0.00 0.00 0.00 1.52
2623 4137 4.577834 TCAGGGATTGTTTCCGAAAAAC 57.422 40.909 0.00 6.47 46.52 2.43
2629 4143 3.065371 GCAGTTATCAGGGATTGTTTCCG 59.935 47.826 0.00 0.00 46.52 4.30
2646 4160 5.091261 AGACGAGATTATTGGAAGCAGTT 57.909 39.130 0.00 0.00 0.00 3.16
2647 4161 4.744795 AGACGAGATTATTGGAAGCAGT 57.255 40.909 0.00 0.00 0.00 4.40
2648 4162 7.151308 AGAATAGACGAGATTATTGGAAGCAG 58.849 38.462 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.