Multiple sequence alignment - TraesCS4A01G423300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G423300 chr4A 100.000 3155 0 0 1 3155 693453150 693449996 0.000000e+00 5827.0
1 TraesCS4A01G423300 chr4A 78.665 2217 334 80 1003 3155 693491542 693489401 0.000000e+00 1345.0
2 TraesCS4A01G423300 chr4A 81.844 1410 199 34 988 2369 693445295 693443915 0.000000e+00 1133.0
3 TraesCS4A01G423300 chr7D 94.681 1711 69 7 1314 3022 33098610 33096920 0.000000e+00 2636.0
4 TraesCS4A01G423300 chr7D 79.296 2217 314 83 988 3140 33105822 33103687 0.000000e+00 1417.0
5 TraesCS4A01G423300 chr7D 79.960 1512 228 43 1679 3153 33056527 33055054 0.000000e+00 1044.0
6 TraesCS4A01G423300 chr7D 93.665 663 38 2 1 662 429501941 429501282 0.000000e+00 989.0
7 TraesCS4A01G423300 chr7D 78.156 1291 222 47 1006 2273 33089070 33087817 0.000000e+00 767.0
8 TraesCS4A01G423300 chr7D 85.775 703 79 10 1872 2560 33095712 33095017 0.000000e+00 725.0
9 TraesCS4A01G423300 chr7D 87.473 463 29 12 834 1268 33099069 33098608 1.010000e-139 507.0
10 TraesCS4A01G423300 chr7D 89.516 248 24 2 1003 1250 33056766 33056521 2.360000e-81 313.0
11 TraesCS4A01G423300 chr7D 96.429 56 2 0 767 822 33099483 33099428 3.350000e-15 93.5
12 TraesCS4A01G423300 chr7A 91.323 1602 82 22 834 2406 33449805 33448232 0.000000e+00 2135.0
13 TraesCS4A01G423300 chr7A 81.466 2088 293 57 1052 3094 33374082 33372044 0.000000e+00 1626.0
14 TraesCS4A01G423300 chr7A 81.286 1384 207 32 1012 2368 33426219 33424861 0.000000e+00 1074.0
15 TraesCS4A01G423300 chr7A 82.348 1082 155 21 1016 2089 33419785 33418732 0.000000e+00 907.0
16 TraesCS4A01G423300 chr7A 78.761 1469 217 52 1714 3140 33455056 33453641 0.000000e+00 896.0
17 TraesCS4A01G423300 chr7A 93.159 497 24 5 2667 3155 33448236 33447742 0.000000e+00 721.0
18 TraesCS4A01G423300 chr7A 86.364 352 38 7 988 1338 33455411 33455069 2.970000e-100 375.0
19 TraesCS4A01G423300 chr5B 94.495 654 36 0 1 654 595492636 595491983 0.000000e+00 1009.0
20 TraesCS4A01G423300 chr5B 94.368 657 36 1 1 656 495450756 495451412 0.000000e+00 1007.0
21 TraesCS4A01G423300 chr5B 94.055 656 38 1 1 656 622816515 622815861 0.000000e+00 994.0
22 TraesCS4A01G423300 chr6B 94.216 657 33 2 1 657 605522695 605522044 0.000000e+00 998.0
23 TraesCS4A01G423300 chr6B 94.207 656 34 1 1 656 630972012 630972663 0.000000e+00 998.0
24 TraesCS4A01G423300 chr6B 93.912 657 39 1 1 656 28839339 28839995 0.000000e+00 990.0
25 TraesCS4A01G423300 chr3B 94.055 656 35 1 1 656 414467256 414466605 0.000000e+00 992.0
26 TraesCS4A01G423300 chr2B 93.534 665 39 4 1 661 491464653 491463989 0.000000e+00 987.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G423300 chr4A 693449996 693453150 3154 True 5827.000 5827 100.00000 1 3155 1 chr4A.!!$R2 3154
1 TraesCS4A01G423300 chr4A 693489401 693491542 2141 True 1345.000 1345 78.66500 1003 3155 1 chr4A.!!$R3 2152
2 TraesCS4A01G423300 chr4A 693443915 693445295 1380 True 1133.000 1133 81.84400 988 2369 1 chr4A.!!$R1 1381
3 TraesCS4A01G423300 chr7D 33103687 33105822 2135 True 1417.000 1417 79.29600 988 3140 1 chr7D.!!$R2 2152
4 TraesCS4A01G423300 chr7D 33095017 33099483 4466 True 990.375 2636 91.08950 767 3022 4 chr7D.!!$R5 2255
5 TraesCS4A01G423300 chr7D 429501282 429501941 659 True 989.000 989 93.66500 1 662 1 chr7D.!!$R3 661
6 TraesCS4A01G423300 chr7D 33087817 33089070 1253 True 767.000 767 78.15600 1006 2273 1 chr7D.!!$R1 1267
7 TraesCS4A01G423300 chr7D 33055054 33056766 1712 True 678.500 1044 84.73800 1003 3153 2 chr7D.!!$R4 2150
8 TraesCS4A01G423300 chr7A 33372044 33374082 2038 True 1626.000 1626 81.46600 1052 3094 1 chr7A.!!$R1 2042
9 TraesCS4A01G423300 chr7A 33424861 33426219 1358 True 1074.000 1074 81.28600 1012 2368 1 chr7A.!!$R3 1356
10 TraesCS4A01G423300 chr7A 33447742 33455411 7669 True 1031.750 2135 87.40175 834 3155 4 chr7A.!!$R4 2321
11 TraesCS4A01G423300 chr7A 33418732 33419785 1053 True 907.000 907 82.34800 1016 2089 1 chr7A.!!$R2 1073
12 TraesCS4A01G423300 chr5B 595491983 595492636 653 True 1009.000 1009 94.49500 1 654 1 chr5B.!!$R1 653
13 TraesCS4A01G423300 chr5B 495450756 495451412 656 False 1007.000 1007 94.36800 1 656 1 chr5B.!!$F1 655
14 TraesCS4A01G423300 chr5B 622815861 622816515 654 True 994.000 994 94.05500 1 656 1 chr5B.!!$R2 655
15 TraesCS4A01G423300 chr6B 605522044 605522695 651 True 998.000 998 94.21600 1 657 1 chr6B.!!$R1 656
16 TraesCS4A01G423300 chr6B 630972012 630972663 651 False 998.000 998 94.20700 1 656 1 chr6B.!!$F2 655
17 TraesCS4A01G423300 chr6B 28839339 28839995 656 False 990.000 990 93.91200 1 656 1 chr6B.!!$F1 655
18 TraesCS4A01G423300 chr3B 414466605 414467256 651 True 992.000 992 94.05500 1 656 1 chr3B.!!$R1 655
19 TraesCS4A01G423300 chr2B 491463989 491464653 664 True 987.000 987 93.53400 1 661 1 chr2B.!!$R1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 679 0.031010 ATCCTACACTCTCCCACCCC 60.031 60.0 0.00 0.0 0.0 4.95 F
722 734 0.105453 ACCCATCGCTCCCTCACTAT 60.105 55.0 0.00 0.0 0.0 2.12 F
904 1264 0.177141 CTTATCAAAGCCCGGTCCGA 59.823 55.0 14.39 0.0 0.0 4.55 F
955 1320 0.531974 TCCGCAAAGTCTCACACACC 60.532 55.0 0.00 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 8072 0.107312 ATCTGCACCAGGATCTGCAC 60.107 55.0 3.41 0.00 38.49 4.57 R
1854 8073 0.179702 GATCTGCACCAGGATCTGCA 59.820 55.0 7.11 7.11 41.13 4.41 R
1855 8074 0.179702 TGATCTGCACCAGGATCTGC 59.820 55.0 13.11 0.00 31.51 4.26 R
2628 11263 1.022735 GAATGTGAGCATGCTGAGGG 58.977 55.0 28.27 0.00 35.15 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 4.859304 TCATTTGAAGCACAAGAGCAAT 57.141 36.364 0.00 0.00 39.77 3.56
118 119 7.865706 ATCAACACACCATCTATTACCTTTC 57.134 36.000 0.00 0.00 0.00 2.62
239 240 5.826737 CCTACTTCGTGAAGATCTACCCTAA 59.173 44.000 16.10 0.00 40.79 2.69
430 431 7.931578 ACAAAAATATCCGTGTCTCCAATTA 57.068 32.000 0.00 0.00 0.00 1.40
449 450 2.038387 ACGTTTGCACTCTCCAAACT 57.962 45.000 13.13 1.21 45.99 2.66
451 452 2.213499 CGTTTGCACTCTCCAAACTCT 58.787 47.619 13.13 0.00 45.99 3.24
461 462 4.908481 ACTCTCCAAACTCTTCCCTTTACT 59.092 41.667 0.00 0.00 0.00 2.24
471 472 5.299531 ACTCTTCCCTTTACTTTCTTGCAAC 59.700 40.000 0.00 0.00 0.00 4.17
474 475 7.057894 TCTTCCCTTTACTTTCTTGCAACTTA 58.942 34.615 0.00 0.00 0.00 2.24
543 544 7.036996 TGAATTGTGTTAAGATTGCTTGACA 57.963 32.000 0.00 0.00 45.07 3.58
566 567 7.940850 ACATGTGCTAAGTTGTTAAAATCTGT 58.059 30.769 0.00 0.00 0.00 3.41
624 626 7.907214 ATTTGGTCAAGTAGTCTAATCACAC 57.093 36.000 0.00 0.00 0.00 3.82
625 627 6.413783 TTGGTCAAGTAGTCTAATCACACA 57.586 37.500 0.00 0.00 0.00 3.72
657 669 8.824756 TCTAGACATACTTTCAATCCTACACT 57.175 34.615 0.00 0.00 0.00 3.55
658 670 8.904834 TCTAGACATACTTTCAATCCTACACTC 58.095 37.037 0.00 0.00 0.00 3.51
659 671 7.726033 AGACATACTTTCAATCCTACACTCT 57.274 36.000 0.00 0.00 0.00 3.24
660 672 7.777095 AGACATACTTTCAATCCTACACTCTC 58.223 38.462 0.00 0.00 0.00 3.20
661 673 6.879400 ACATACTTTCAATCCTACACTCTCC 58.121 40.000 0.00 0.00 0.00 3.71
662 674 4.828072 ACTTTCAATCCTACACTCTCCC 57.172 45.455 0.00 0.00 0.00 4.30
663 675 4.168101 ACTTTCAATCCTACACTCTCCCA 58.832 43.478 0.00 0.00 0.00 4.37
664 676 4.020128 ACTTTCAATCCTACACTCTCCCAC 60.020 45.833 0.00 0.00 0.00 4.61
665 677 2.467880 TCAATCCTACACTCTCCCACC 58.532 52.381 0.00 0.00 0.00 4.61
666 678 1.486726 CAATCCTACACTCTCCCACCC 59.513 57.143 0.00 0.00 0.00 4.61
667 679 0.031010 ATCCTACACTCTCCCACCCC 60.031 60.000 0.00 0.00 0.00 4.95
668 680 1.153695 TCCTACACTCTCCCACCCCT 61.154 60.000 0.00 0.00 0.00 4.79
669 681 0.252742 CCTACACTCTCCCACCCCTT 60.253 60.000 0.00 0.00 0.00 3.95
670 682 1.196012 CTACACTCTCCCACCCCTTC 58.804 60.000 0.00 0.00 0.00 3.46
671 683 0.490017 TACACTCTCCCACCCCTTCA 59.510 55.000 0.00 0.00 0.00 3.02
672 684 1.128188 ACACTCTCCCACCCCTTCAC 61.128 60.000 0.00 0.00 0.00 3.18
673 685 1.539124 ACTCTCCCACCCCTTCACC 60.539 63.158 0.00 0.00 0.00 4.02
674 686 2.204090 TCTCCCACCCCTTCACCC 60.204 66.667 0.00 0.00 0.00 4.61
675 687 3.339093 CTCCCACCCCTTCACCCC 61.339 72.222 0.00 0.00 0.00 4.95
678 690 3.979497 CCACCCCTTCACCCCCAC 61.979 72.222 0.00 0.00 0.00 4.61
679 691 3.182263 CACCCCTTCACCCCCACA 61.182 66.667 0.00 0.00 0.00 4.17
680 692 3.182996 ACCCCTTCACCCCCACAC 61.183 66.667 0.00 0.00 0.00 3.82
681 693 2.858974 CCCCTTCACCCCCACACT 60.859 66.667 0.00 0.00 0.00 3.55
682 694 2.436109 CCCTTCACCCCCACACTG 59.564 66.667 0.00 0.00 0.00 3.66
683 695 2.153401 CCCTTCACCCCCACACTGA 61.153 63.158 0.00 0.00 0.00 3.41
684 696 1.376466 CCTTCACCCCCACACTGAG 59.624 63.158 0.00 0.00 0.00 3.35
685 697 1.302832 CTTCACCCCCACACTGAGC 60.303 63.158 0.00 0.00 0.00 4.26
686 698 3.177194 TTCACCCCCACACTGAGCG 62.177 63.158 0.00 0.00 0.00 5.03
687 699 3.941188 CACCCCCACACTGAGCGT 61.941 66.667 0.00 0.00 0.00 5.07
688 700 2.203728 ACCCCCACACTGAGCGTA 60.204 61.111 0.00 0.00 0.00 4.42
689 701 1.839747 ACCCCCACACTGAGCGTAA 60.840 57.895 0.00 0.00 0.00 3.18
690 702 1.198759 ACCCCCACACTGAGCGTAAT 61.199 55.000 0.00 0.00 0.00 1.89
691 703 0.828022 CCCCCACACTGAGCGTAATA 59.172 55.000 0.00 0.00 0.00 0.98
692 704 1.202533 CCCCCACACTGAGCGTAATAG 60.203 57.143 0.00 0.00 0.00 1.73
693 705 1.480954 CCCCACACTGAGCGTAATAGT 59.519 52.381 0.00 0.00 0.00 2.12
694 706 2.481449 CCCCACACTGAGCGTAATAGTC 60.481 54.545 0.00 0.00 0.00 2.59
695 707 2.427453 CCCACACTGAGCGTAATAGTCT 59.573 50.000 0.00 0.00 0.00 3.24
696 708 3.119101 CCCACACTGAGCGTAATAGTCTT 60.119 47.826 0.00 0.00 0.00 3.01
697 709 3.859961 CCACACTGAGCGTAATAGTCTTG 59.140 47.826 0.00 0.00 0.00 3.02
698 710 4.380550 CCACACTGAGCGTAATAGTCTTGA 60.381 45.833 0.00 0.00 0.00 3.02
699 711 4.559251 CACACTGAGCGTAATAGTCTTGAC 59.441 45.833 0.00 0.00 0.00 3.18
700 712 4.106197 CACTGAGCGTAATAGTCTTGACC 58.894 47.826 0.00 0.00 0.00 4.02
701 713 3.762288 ACTGAGCGTAATAGTCTTGACCA 59.238 43.478 0.00 0.00 0.00 4.02
702 714 4.106029 TGAGCGTAATAGTCTTGACCAC 57.894 45.455 0.00 0.00 0.00 4.16
703 715 3.508402 TGAGCGTAATAGTCTTGACCACA 59.492 43.478 0.00 0.00 0.00 4.17
704 716 3.846360 AGCGTAATAGTCTTGACCACAC 58.154 45.455 0.00 0.00 0.00 3.82
705 717 2.928116 GCGTAATAGTCTTGACCACACC 59.072 50.000 0.00 0.00 0.00 4.16
706 718 3.518590 CGTAATAGTCTTGACCACACCC 58.481 50.000 0.00 0.00 0.00 4.61
707 719 3.056393 CGTAATAGTCTTGACCACACCCA 60.056 47.826 0.00 0.00 0.00 4.51
708 720 4.382685 CGTAATAGTCTTGACCACACCCAT 60.383 45.833 0.00 0.00 0.00 4.00
709 721 3.914426 ATAGTCTTGACCACACCCATC 57.086 47.619 0.00 0.00 0.00 3.51
710 722 0.321671 AGTCTTGACCACACCCATCG 59.678 55.000 0.00 0.00 0.00 3.84
711 723 1.003839 TCTTGACCACACCCATCGC 60.004 57.895 0.00 0.00 0.00 4.58
712 724 1.003355 CTTGACCACACCCATCGCT 60.003 57.895 0.00 0.00 0.00 4.93
713 725 1.003839 TTGACCACACCCATCGCTC 60.004 57.895 0.00 0.00 0.00 5.03
714 726 2.125106 GACCACACCCATCGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
715 727 3.682292 GACCACACCCATCGCTCCC 62.682 68.421 0.00 0.00 0.00 4.30
716 728 3.402681 CCACACCCATCGCTCCCT 61.403 66.667 0.00 0.00 0.00 4.20
717 729 2.187946 CACACCCATCGCTCCCTC 59.812 66.667 0.00 0.00 0.00 4.30
718 730 2.284625 ACACCCATCGCTCCCTCA 60.285 61.111 0.00 0.00 0.00 3.86
719 731 2.187946 CACCCATCGCTCCCTCAC 59.812 66.667 0.00 0.00 0.00 3.51
720 732 2.039624 ACCCATCGCTCCCTCACT 59.960 61.111 0.00 0.00 0.00 3.41
721 733 1.043116 CACCCATCGCTCCCTCACTA 61.043 60.000 0.00 0.00 0.00 2.74
722 734 0.105453 ACCCATCGCTCCCTCACTAT 60.105 55.000 0.00 0.00 0.00 2.12
723 735 0.319728 CCCATCGCTCCCTCACTATG 59.680 60.000 0.00 0.00 0.00 2.23
724 736 1.332195 CCATCGCTCCCTCACTATGA 58.668 55.000 0.00 0.00 0.00 2.15
725 737 1.271934 CCATCGCTCCCTCACTATGAG 59.728 57.143 0.00 0.00 43.91 2.90
726 738 1.959985 CATCGCTCCCTCACTATGAGT 59.040 52.381 5.18 0.00 42.80 3.41
727 739 2.145397 TCGCTCCCTCACTATGAGTT 57.855 50.000 5.18 0.00 42.80 3.01
728 740 3.292492 TCGCTCCCTCACTATGAGTTA 57.708 47.619 5.18 0.00 42.80 2.24
729 741 3.628008 TCGCTCCCTCACTATGAGTTAA 58.372 45.455 5.18 0.00 42.80 2.01
730 742 4.021229 TCGCTCCCTCACTATGAGTTAAA 58.979 43.478 5.18 0.00 42.80 1.52
731 743 4.649674 TCGCTCCCTCACTATGAGTTAAAT 59.350 41.667 5.18 0.00 42.80 1.40
732 744 5.128827 TCGCTCCCTCACTATGAGTTAAATT 59.871 40.000 5.18 0.00 42.80 1.82
733 745 5.817816 CGCTCCCTCACTATGAGTTAAATTT 59.182 40.000 5.18 0.00 42.80 1.82
734 746 6.238211 CGCTCCCTCACTATGAGTTAAATTTG 60.238 42.308 0.00 0.00 42.80 2.32
735 747 6.599638 GCTCCCTCACTATGAGTTAAATTTGT 59.400 38.462 0.00 0.00 42.80 2.83
736 748 7.769044 GCTCCCTCACTATGAGTTAAATTTGTA 59.231 37.037 0.00 0.00 42.80 2.41
737 749 9.319143 CTCCCTCACTATGAGTTAAATTTGTAG 57.681 37.037 0.00 0.00 42.80 2.74
738 750 7.769044 TCCCTCACTATGAGTTAAATTTGTAGC 59.231 37.037 0.00 0.00 42.80 3.58
739 751 7.552687 CCCTCACTATGAGTTAAATTTGTAGCA 59.447 37.037 0.00 0.00 42.80 3.49
740 752 8.391106 CCTCACTATGAGTTAAATTTGTAGCAC 58.609 37.037 0.00 0.00 42.80 4.40
741 753 8.840833 TCACTATGAGTTAAATTTGTAGCACA 57.159 30.769 0.00 0.00 0.00 4.57
742 754 8.717821 TCACTATGAGTTAAATTTGTAGCACAC 58.282 33.333 0.00 0.00 0.00 3.82
743 755 8.503196 CACTATGAGTTAAATTTGTAGCACACA 58.497 33.333 0.00 0.00 34.51 3.72
744 756 9.231297 ACTATGAGTTAAATTTGTAGCACACAT 57.769 29.630 0.00 3.50 36.90 3.21
745 757 9.494479 CTATGAGTTAAATTTGTAGCACACATG 57.506 33.333 0.00 0.00 36.90 3.21
764 776 4.717877 CATGCCTAATGTGTAATCTGGGA 58.282 43.478 0.00 0.00 0.00 4.37
765 777 4.150897 TGCCTAATGTGTAATCTGGGAC 57.849 45.455 0.00 0.00 0.00 4.46
805 817 0.245813 AAAGGTAGTTCGGTCCGAGC 59.754 55.000 19.47 19.47 37.14 5.03
824 836 3.682372 GCTCGGGCTTCTCATTTTTAG 57.318 47.619 0.00 0.00 35.22 1.85
825 837 3.270877 GCTCGGGCTTCTCATTTTTAGA 58.729 45.455 0.00 0.00 35.22 2.10
826 838 3.689649 GCTCGGGCTTCTCATTTTTAGAA 59.310 43.478 0.00 0.00 35.22 2.10
827 839 4.336713 GCTCGGGCTTCTCATTTTTAGAAT 59.663 41.667 0.00 0.00 32.72 2.40
828 840 5.163612 GCTCGGGCTTCTCATTTTTAGAATT 60.164 40.000 0.00 0.00 32.72 2.17
829 841 6.625960 GCTCGGGCTTCTCATTTTTAGAATTT 60.626 38.462 0.00 0.00 32.72 1.82
830 842 6.852664 TCGGGCTTCTCATTTTTAGAATTTC 58.147 36.000 0.00 0.00 32.72 2.17
831 843 6.432783 TCGGGCTTCTCATTTTTAGAATTTCA 59.567 34.615 0.00 0.00 32.72 2.69
832 844 7.040062 TCGGGCTTCTCATTTTTAGAATTTCAA 60.040 33.333 0.00 0.00 32.72 2.69
875 1235 4.944962 TCATGCTTCGGTCTGTATTTTG 57.055 40.909 0.00 0.00 0.00 2.44
880 1240 3.751698 GCTTCGGTCTGTATTTTGAAGGT 59.248 43.478 2.43 0.00 34.78 3.50
881 1241 4.215613 GCTTCGGTCTGTATTTTGAAGGTT 59.784 41.667 2.43 0.00 34.78 3.50
883 1243 4.963373 TCGGTCTGTATTTTGAAGGTTCA 58.037 39.130 0.00 0.00 34.92 3.18
890 1250 9.827411 GTCTGTATTTTGAAGGTTCAACTTATC 57.173 33.333 4.61 0.00 45.99 1.75
891 1251 9.567776 TCTGTATTTTGAAGGTTCAACTTATCA 57.432 29.630 4.61 1.91 45.99 2.15
900 1260 2.817844 GTTCAACTTATCAAAGCCCGGT 59.182 45.455 0.00 0.00 36.05 5.28
904 1264 0.177141 CTTATCAAAGCCCGGTCCGA 59.823 55.000 14.39 0.00 0.00 4.55
906 1266 1.259142 TATCAAAGCCCGGTCCGACA 61.259 55.000 14.39 0.00 0.00 4.35
920 1285 0.798776 CCGACACATGCTCAGGTTTC 59.201 55.000 0.00 0.00 0.00 2.78
939 1304 0.933097 CAGCCGTCAATCTGATTCCG 59.067 55.000 0.00 6.03 32.26 4.30
941 1306 1.089481 GCCGTCAATCTGATTCCGCA 61.089 55.000 0.00 0.00 0.00 5.69
945 1310 2.416547 CGTCAATCTGATTCCGCAAAGT 59.583 45.455 0.00 0.00 0.00 2.66
946 1311 3.484229 CGTCAATCTGATTCCGCAAAGTC 60.484 47.826 0.00 0.00 0.00 3.01
950 1315 2.688507 TCTGATTCCGCAAAGTCTCAC 58.311 47.619 0.00 0.00 0.00 3.51
955 1320 0.531974 TCCGCAAAGTCTCACACACC 60.532 55.000 0.00 0.00 0.00 4.16
1074 1461 3.749064 GACCTCACGCGAGCCTCA 61.749 66.667 15.93 0.00 38.00 3.86
1257 7436 2.484889 GACTTGTCGTGCTCCTTTCTT 58.515 47.619 0.00 0.00 0.00 2.52
1747 7941 3.215151 CGCAGGATAGAGTTCTCCACTA 58.785 50.000 0.00 0.00 35.01 2.74
1759 7953 1.286849 TCTCCACTATTGACCTCCCGA 59.713 52.381 0.00 0.00 0.00 5.14
1770 7964 3.775654 CTCCCGACTCCACCTGGC 61.776 72.222 0.00 0.00 34.44 4.85
1837 8054 4.528596 GGCTTGGGATGCTTACTATCTCTA 59.471 45.833 0.00 0.00 0.00 2.43
1851 8070 5.463154 ACTATCTCTAAGCATCCTGAACCT 58.537 41.667 0.00 0.00 0.00 3.50
1852 8071 4.686191 ATCTCTAAGCATCCTGAACCTG 57.314 45.455 0.00 0.00 0.00 4.00
1853 8072 2.768527 TCTCTAAGCATCCTGAACCTGG 59.231 50.000 0.00 0.00 0.00 4.45
1854 8073 2.503356 CTCTAAGCATCCTGAACCTGGT 59.497 50.000 0.00 0.00 0.00 4.00
1855 8074 2.237143 TCTAAGCATCCTGAACCTGGTG 59.763 50.000 0.00 0.00 0.00 4.17
1856 8075 0.610232 AAGCATCCTGAACCTGGTGC 60.610 55.000 0.00 0.00 33.50 5.01
1857 8076 1.303561 GCATCCTGAACCTGGTGCA 60.304 57.895 7.43 7.43 33.52 4.57
1858 8077 1.310933 GCATCCTGAACCTGGTGCAG 61.311 60.000 25.51 25.51 38.85 4.41
1859 8078 0.325933 CATCCTGAACCTGGTGCAGA 59.674 55.000 32.36 19.74 41.52 4.26
1860 8079 1.064906 CATCCTGAACCTGGTGCAGAT 60.065 52.381 32.36 20.90 41.52 2.90
1861 8080 0.615331 TCCTGAACCTGGTGCAGATC 59.385 55.000 32.36 12.10 41.52 2.75
1910 8138 2.555199 ACAGTCTAAGGATGCGAATGC 58.445 47.619 0.00 0.00 43.20 3.56
2065 8296 3.269178 CTGAATCTCCAGACTTTCCAGC 58.731 50.000 0.00 0.00 36.29 4.85
2076 8307 2.952310 GACTTTCCAGCTTGAGTGGTTT 59.048 45.455 0.00 0.00 36.37 3.27
2100 8332 5.724328 TGTCAGACTGGTGATAAAGTCATC 58.276 41.667 1.81 0.00 44.34 2.92
2242 10843 9.494271 CTGATGCAAGTGTTAGTTATATGGTAT 57.506 33.333 0.00 0.00 0.00 2.73
2270 10871 9.817809 GTGTACATTATCATTCTCTACTTTGGA 57.182 33.333 0.00 0.00 0.00 3.53
2403 11020 5.639082 GGGCAATTCGAAATCTGTGAATTTT 59.361 36.000 0.00 0.00 39.58 1.82
2407 11024 7.009540 GCAATTCGAAATCTGTGAATTTTAGGG 59.990 37.037 0.00 0.00 39.58 3.53
2415 11032 7.775053 ATCTGTGAATTTTAGGGTAAGCAAA 57.225 32.000 0.00 0.00 0.00 3.68
2459 11076 9.166173 CTTGTGAATATGACTGTCCTCATTTTA 57.834 33.333 5.17 0.00 32.86 1.52
2470 11087 6.879458 ACTGTCCTCATTTTAAGTGTCATACC 59.121 38.462 0.00 0.00 0.00 2.73
2489 11117 8.223769 GTCATACCGAAATAGTAATCAGCATTG 58.776 37.037 0.00 0.00 0.00 2.82
2500 11128 2.785540 TCAGCATTGCAGTATGGACA 57.214 45.000 11.91 0.00 34.66 4.02
2504 11132 3.012518 AGCATTGCAGTATGGACAAGTC 58.987 45.455 11.91 0.00 34.66 3.01
2506 11134 3.191162 GCATTGCAGTATGGACAAGTCAA 59.809 43.478 3.15 0.00 34.66 3.18
2538 11170 4.634004 TGACATGTATTTGCTACTTTCCCG 59.366 41.667 0.00 0.00 0.00 5.14
2539 11171 3.377172 ACATGTATTTGCTACTTTCCCGC 59.623 43.478 0.00 0.00 0.00 6.13
2612 11247 3.974871 ACGTATTGAACCGTTTGCTTT 57.025 38.095 0.00 0.00 32.50 3.51
2613 11248 5.389725 GCTACGTATTGAACCGTTTGCTTTA 60.390 40.000 0.00 0.00 38.43 1.85
2628 11263 4.473477 TGCTTTAGCTAGTTCCTTCTCC 57.527 45.455 3.10 0.00 42.66 3.71
2629 11264 3.197983 TGCTTTAGCTAGTTCCTTCTCCC 59.802 47.826 3.10 0.00 42.66 4.30
2641 11276 0.179051 CTTCTCCCCTCAGCATGCTC 60.179 60.000 19.68 0.00 34.76 4.26
2654 11291 3.190744 CAGCATGCTCACATTCTTCTTGT 59.809 43.478 19.68 0.00 32.87 3.16
2693 11330 2.269940 AGCTACTTTGTGGTGGGATCT 58.730 47.619 0.00 0.00 0.00 2.75
2803 11452 7.990314 ACTATTTTTAATTTTGTTGGGCTGTGT 59.010 29.630 0.00 0.00 0.00 3.72
2930 11580 6.094603 GCATCATCACCAAGTTATCAAGTCTT 59.905 38.462 0.00 0.00 0.00 3.01
2941 11591 5.536161 AGTTATCAAGTCTTGTGGCATGTTT 59.464 36.000 12.30 0.00 0.00 2.83
2954 11604 2.099756 GGCATGTTTGGTGGAATAGCTC 59.900 50.000 0.00 0.00 0.00 4.09
3022 11678 6.746104 TTTGTGTTTTTATCTCACAATGCG 57.254 33.333 10.03 0.00 46.47 4.73
3055 11711 6.295719 AGAAACTTCGGGTCATACTATTGT 57.704 37.500 0.00 0.00 0.00 2.71
3090 11752 4.783764 AAATGAGACCACCCGAAAAATC 57.216 40.909 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 6.475504 AGATGGTGTGTTGATAATGAACTCA 58.524 36.000 0.00 0.00 0.00 3.41
346 347 0.391597 TGGAGACTTCAACCCACGAC 59.608 55.000 0.00 0.00 0.00 4.34
449 450 5.445964 AGTTGCAAGAAAGTAAAGGGAAGA 58.554 37.500 0.00 0.00 0.00 2.87
451 452 6.603997 TGTAAGTTGCAAGAAAGTAAAGGGAA 59.396 34.615 0.00 0.00 0.00 3.97
461 462 7.038154 AGTAAAGCATGTAAGTTGCAAGAAA 57.962 32.000 0.00 0.00 42.62 2.52
471 472 7.602517 AGTAGCAGAAAGTAAAGCATGTAAG 57.397 36.000 0.00 0.00 0.00 2.34
474 475 9.838339 ATATAAGTAGCAGAAAGTAAAGCATGT 57.162 29.630 0.00 0.00 0.00 3.21
543 544 8.165239 TGACAGATTTTAACAACTTAGCACAT 57.835 30.769 0.00 0.00 0.00 3.21
566 567 7.734942 AGCATTTTCCCAATTTTAGTTCTTGA 58.265 30.769 0.00 0.00 0.00 3.02
657 669 2.204090 GGGTGAAGGGGTGGGAGA 60.204 66.667 0.00 0.00 0.00 3.71
658 670 3.339093 GGGGTGAAGGGGTGGGAG 61.339 72.222 0.00 0.00 0.00 4.30
661 673 3.979497 GTGGGGGTGAAGGGGTGG 61.979 72.222 0.00 0.00 0.00 4.61
662 674 3.182263 TGTGGGGGTGAAGGGGTG 61.182 66.667 0.00 0.00 0.00 4.61
663 675 3.182996 GTGTGGGGGTGAAGGGGT 61.183 66.667 0.00 0.00 0.00 4.95
664 676 2.858974 AGTGTGGGGGTGAAGGGG 60.859 66.667 0.00 0.00 0.00 4.79
665 677 2.129555 CTCAGTGTGGGGGTGAAGGG 62.130 65.000 0.00 0.00 0.00 3.95
666 678 1.376466 CTCAGTGTGGGGGTGAAGG 59.624 63.158 0.00 0.00 0.00 3.46
667 679 1.302832 GCTCAGTGTGGGGGTGAAG 60.303 63.158 0.00 0.00 0.00 3.02
668 680 2.836154 GCTCAGTGTGGGGGTGAA 59.164 61.111 0.00 0.00 0.00 3.18
669 681 3.625897 CGCTCAGTGTGGGGGTGA 61.626 66.667 1.53 0.00 0.00 4.02
670 682 2.107041 TTACGCTCAGTGTGGGGGTG 62.107 60.000 13.06 0.00 44.23 4.61
671 683 1.198759 ATTACGCTCAGTGTGGGGGT 61.199 55.000 13.06 1.81 46.33 4.95
672 684 0.828022 TATTACGCTCAGTGTGGGGG 59.172 55.000 13.06 5.42 36.78 5.40
673 685 1.480954 ACTATTACGCTCAGTGTGGGG 59.519 52.381 13.06 7.56 0.00 4.96
674 686 2.427453 AGACTATTACGCTCAGTGTGGG 59.573 50.000 0.00 7.62 0.00 4.61
675 687 3.784701 AGACTATTACGCTCAGTGTGG 57.215 47.619 0.00 0.00 0.00 4.17
676 688 4.559251 GTCAAGACTATTACGCTCAGTGTG 59.441 45.833 0.00 0.00 0.00 3.82
677 689 4.380655 GGTCAAGACTATTACGCTCAGTGT 60.381 45.833 0.00 0.00 0.00 3.55
678 690 4.106197 GGTCAAGACTATTACGCTCAGTG 58.894 47.826 0.00 0.00 0.00 3.66
679 691 3.762288 TGGTCAAGACTATTACGCTCAGT 59.238 43.478 0.00 0.00 0.00 3.41
680 692 4.106197 GTGGTCAAGACTATTACGCTCAG 58.894 47.826 0.00 0.00 0.00 3.35
681 693 3.508402 TGTGGTCAAGACTATTACGCTCA 59.492 43.478 0.00 0.00 0.00 4.26
682 694 3.858238 GTGTGGTCAAGACTATTACGCTC 59.142 47.826 0.00 0.00 0.00 5.03
683 695 3.368116 GGTGTGGTCAAGACTATTACGCT 60.368 47.826 0.00 0.00 0.00 5.07
684 696 2.928116 GGTGTGGTCAAGACTATTACGC 59.072 50.000 0.00 2.41 0.00 4.42
685 697 3.056393 TGGGTGTGGTCAAGACTATTACG 60.056 47.826 0.00 0.00 0.00 3.18
686 698 4.546829 TGGGTGTGGTCAAGACTATTAC 57.453 45.455 0.00 0.00 0.00 1.89
687 699 4.142026 CGATGGGTGTGGTCAAGACTATTA 60.142 45.833 0.00 0.00 0.00 0.98
688 700 3.369471 CGATGGGTGTGGTCAAGACTATT 60.369 47.826 0.00 0.00 0.00 1.73
689 701 2.168521 CGATGGGTGTGGTCAAGACTAT 59.831 50.000 0.00 0.00 0.00 2.12
690 702 1.548719 CGATGGGTGTGGTCAAGACTA 59.451 52.381 0.00 0.00 0.00 2.59
691 703 0.321671 CGATGGGTGTGGTCAAGACT 59.678 55.000 0.00 0.00 0.00 3.24
692 704 1.298859 GCGATGGGTGTGGTCAAGAC 61.299 60.000 0.00 0.00 0.00 3.01
693 705 1.003839 GCGATGGGTGTGGTCAAGA 60.004 57.895 0.00 0.00 0.00 3.02
694 706 1.003355 AGCGATGGGTGTGGTCAAG 60.003 57.895 0.00 0.00 0.00 3.02
695 707 1.003839 GAGCGATGGGTGTGGTCAA 60.004 57.895 0.00 0.00 0.00 3.18
696 708 2.662596 GAGCGATGGGTGTGGTCA 59.337 61.111 0.00 0.00 0.00 4.02
697 709 2.125106 GGAGCGATGGGTGTGGTC 60.125 66.667 0.00 0.00 0.00 4.02
698 710 3.717294 GGGAGCGATGGGTGTGGT 61.717 66.667 0.00 0.00 0.00 4.16
699 711 3.391665 GAGGGAGCGATGGGTGTGG 62.392 68.421 0.00 0.00 0.00 4.17
700 712 2.187946 GAGGGAGCGATGGGTGTG 59.812 66.667 0.00 0.00 0.00 3.82
701 713 2.284625 TGAGGGAGCGATGGGTGT 60.285 61.111 0.00 0.00 0.00 4.16
702 714 1.043116 TAGTGAGGGAGCGATGGGTG 61.043 60.000 0.00 0.00 0.00 4.61
703 715 0.105453 ATAGTGAGGGAGCGATGGGT 60.105 55.000 0.00 0.00 0.00 4.51
704 716 0.319728 CATAGTGAGGGAGCGATGGG 59.680 60.000 0.00 0.00 0.00 4.00
705 717 1.271934 CTCATAGTGAGGGAGCGATGG 59.728 57.143 0.00 0.00 40.71 3.51
706 718 2.721274 CTCATAGTGAGGGAGCGATG 57.279 55.000 0.00 0.00 40.71 3.84
716 728 8.717821 GTGTGCTACAAATTTAACTCATAGTGA 58.282 33.333 0.00 0.00 0.00 3.41
717 729 8.503196 TGTGTGCTACAAATTTAACTCATAGTG 58.497 33.333 0.00 0.00 36.06 2.74
718 730 8.615878 TGTGTGCTACAAATTTAACTCATAGT 57.384 30.769 0.00 0.00 36.06 2.12
719 731 9.494479 CATGTGTGCTACAAATTTAACTCATAG 57.506 33.333 0.00 0.00 43.77 2.23
742 754 4.516698 GTCCCAGATTACACATTAGGCATG 59.483 45.833 0.00 0.00 39.07 4.06
743 755 4.718961 GTCCCAGATTACACATTAGGCAT 58.281 43.478 0.00 0.00 0.00 4.40
744 756 3.431626 CGTCCCAGATTACACATTAGGCA 60.432 47.826 0.00 0.00 0.00 4.75
745 757 3.131396 CGTCCCAGATTACACATTAGGC 58.869 50.000 0.00 0.00 0.00 3.93
746 758 3.494398 CCCGTCCCAGATTACACATTAGG 60.494 52.174 0.00 0.00 0.00 2.69
747 759 3.728845 CCCGTCCCAGATTACACATTAG 58.271 50.000 0.00 0.00 0.00 1.73
748 760 2.158871 GCCCGTCCCAGATTACACATTA 60.159 50.000 0.00 0.00 0.00 1.90
749 761 1.408266 GCCCGTCCCAGATTACACATT 60.408 52.381 0.00 0.00 0.00 2.71
750 762 0.180406 GCCCGTCCCAGATTACACAT 59.820 55.000 0.00 0.00 0.00 3.21
751 763 1.600107 GCCCGTCCCAGATTACACA 59.400 57.895 0.00 0.00 0.00 3.72
752 764 1.153229 GGCCCGTCCCAGATTACAC 60.153 63.158 0.00 0.00 0.00 2.90
753 765 1.306654 AGGCCCGTCCCAGATTACA 60.307 57.895 0.00 0.00 34.51 2.41
754 766 1.335132 TGAGGCCCGTCCCAGATTAC 61.335 60.000 0.00 0.00 34.51 1.89
755 767 0.399949 ATGAGGCCCGTCCCAGATTA 60.400 55.000 0.00 0.00 34.51 1.75
756 768 1.281925 AATGAGGCCCGTCCCAGATT 61.282 55.000 0.00 0.00 34.51 2.40
757 769 1.281925 AAATGAGGCCCGTCCCAGAT 61.282 55.000 0.00 0.00 34.51 2.90
758 770 1.497309 AAAATGAGGCCCGTCCCAGA 61.497 55.000 0.00 0.00 34.51 3.86
759 771 1.000896 AAAATGAGGCCCGTCCCAG 60.001 57.895 0.00 0.00 34.51 4.45
760 772 1.304052 CAAAATGAGGCCCGTCCCA 60.304 57.895 0.00 0.00 34.51 4.37
761 773 0.034863 TACAAAATGAGGCCCGTCCC 60.035 55.000 0.00 0.00 34.51 4.46
762 774 1.379527 CTACAAAATGAGGCCCGTCC 58.620 55.000 0.00 0.00 0.00 4.79
763 775 0.733150 GCTACAAAATGAGGCCCGTC 59.267 55.000 0.00 0.00 0.00 4.79
764 776 0.679960 GGCTACAAAATGAGGCCCGT 60.680 55.000 0.00 0.00 34.50 5.28
765 777 2.106844 GGCTACAAAATGAGGCCCG 58.893 57.895 0.00 0.00 34.50 6.13
805 817 6.442513 AATTCTAAAAATGAGAAGCCCGAG 57.557 37.500 0.00 0.00 36.41 4.63
845 1204 4.818546 CAGACCGAAGCATGAATTATCCTT 59.181 41.667 0.00 0.00 0.00 3.36
850 1209 7.335673 TCAAAATACAGACCGAAGCATGAATTA 59.664 33.333 0.00 0.00 0.00 1.40
857 1216 3.751175 CCTTCAAAATACAGACCGAAGCA 59.249 43.478 0.00 0.00 0.00 3.91
875 1235 4.379499 CGGGCTTTGATAAGTTGAACCTTC 60.379 45.833 0.00 0.00 33.74 3.46
880 1240 3.078837 GACCGGGCTTTGATAAGTTGAA 58.921 45.455 6.32 0.00 33.74 2.69
881 1241 2.617021 GGACCGGGCTTTGATAAGTTGA 60.617 50.000 7.57 0.00 33.74 3.18
883 1243 1.677820 CGGACCGGGCTTTGATAAGTT 60.678 52.381 7.57 0.00 33.74 2.66
890 1250 3.047877 GTGTCGGACCGGGCTTTG 61.048 66.667 15.25 0.00 0.00 2.77
891 1251 2.890766 ATGTGTCGGACCGGGCTTT 61.891 57.895 15.25 0.00 0.00 3.51
900 1260 0.396435 AAACCTGAGCATGTGTCGGA 59.604 50.000 7.42 0.00 0.00 4.55
904 1264 1.242076 GCTGAAACCTGAGCATGTGT 58.758 50.000 0.00 0.00 35.15 3.72
906 1266 0.957395 CGGCTGAAACCTGAGCATGT 60.957 55.000 0.00 0.00 36.90 3.21
920 1285 0.933097 CGGAATCAGATTGACGGCTG 59.067 55.000 0.00 0.00 0.00 4.85
939 1304 0.947244 CAGGGTGTGTGAGACTTTGC 59.053 55.000 0.00 0.00 0.00 3.68
941 1306 0.839946 AGCAGGGTGTGTGAGACTTT 59.160 50.000 0.00 0.00 0.00 2.66
945 1310 0.969149 CTACAGCAGGGTGTGTGAGA 59.031 55.000 13.90 0.00 31.46 3.27
946 1311 0.036952 CCTACAGCAGGGTGTGTGAG 60.037 60.000 13.90 3.98 41.26 3.51
1651 7842 1.526917 GGGCATAGAAGCGGTGCAT 60.527 57.895 0.00 0.00 40.53 3.96
1747 7941 1.265454 GGTGGAGTCGGGAGGTCAAT 61.265 60.000 0.00 0.00 0.00 2.57
1759 7953 2.125912 ATCAGGGCCAGGTGGAGT 59.874 61.111 6.18 0.00 37.39 3.85
1770 7964 1.019673 CCATCTTTCGCACATCAGGG 58.980 55.000 0.00 0.00 0.00 4.45
1837 8054 0.610232 GCACCAGGTTCAGGATGCTT 60.610 55.000 0.00 0.00 34.76 3.91
1851 8070 2.352422 GCACCAGGATCTGCACCA 59.648 61.111 0.00 0.00 33.31 4.17
1852 8071 1.748122 CTGCACCAGGATCTGCACC 60.748 63.158 3.41 0.00 38.49 5.01
1853 8072 0.107312 ATCTGCACCAGGATCTGCAC 60.107 55.000 3.41 0.00 38.49 4.57
1854 8073 0.179702 GATCTGCACCAGGATCTGCA 59.820 55.000 7.11 7.11 41.13 4.41
1855 8074 0.179702 TGATCTGCACCAGGATCTGC 59.820 55.000 13.11 0.00 31.51 4.26
1856 8075 2.369203 AGATGATCTGCACCAGGATCTG 59.631 50.000 13.11 0.00 31.51 2.90
1857 8076 2.633967 GAGATGATCTGCACCAGGATCT 59.366 50.000 0.00 3.48 30.73 2.75
1858 8077 2.289569 GGAGATGATCTGCACCAGGATC 60.290 54.545 9.20 6.70 34.73 3.36
1859 8078 1.698532 GGAGATGATCTGCACCAGGAT 59.301 52.381 9.20 0.00 34.73 3.24
1860 8079 1.126488 GGAGATGATCTGCACCAGGA 58.874 55.000 9.20 0.00 34.73 3.86
1861 8080 1.129917 AGGAGATGATCTGCACCAGG 58.870 55.000 16.35 0.00 37.29 4.45
2065 8296 3.313526 CCAGTCTGACAAAACCACTCAAG 59.686 47.826 10.88 0.00 0.00 3.02
2076 8307 5.545063 TGACTTTATCACCAGTCTGACAA 57.455 39.130 10.88 0.00 40.24 3.18
2100 8332 1.086696 CGGCATACAGGTCACCAAAG 58.913 55.000 0.00 0.00 0.00 2.77
2270 10871 1.344763 AGCGCTAGTTCAGGACTGTTT 59.655 47.619 8.99 0.00 39.48 2.83
2286 10888 1.305219 TAACTTGGCCACATCAGCGC 61.305 55.000 3.88 0.00 0.00 5.92
2403 11020 8.161425 AGAAACAGATACTTTTTGCTTACCCTA 58.839 33.333 0.00 0.00 0.00 3.53
2407 11024 9.548208 GATGAGAAACAGATACTTTTTGCTTAC 57.452 33.333 0.00 0.00 0.00 2.34
2415 11032 8.908786 TTCACAAGATGAGAAACAGATACTTT 57.091 30.769 0.00 0.00 38.99 2.66
2422 11039 8.388853 CAGTCATATTCACAAGATGAGAAACAG 58.611 37.037 0.00 0.00 39.55 3.16
2459 11076 7.438459 GCTGATTACTATTTCGGTATGACACTT 59.562 37.037 0.00 0.00 0.00 3.16
2470 11087 6.052840 ACTGCAATGCTGATTACTATTTCG 57.947 37.500 18.78 0.00 0.00 3.46
2489 11117 2.417933 CAGCTTGACTTGTCCATACTGC 59.582 50.000 0.00 0.00 0.00 4.40
2504 11132 5.290158 GCAAATACATGTCAAATCCAGCTTG 59.710 40.000 0.00 0.00 0.00 4.01
2506 11134 4.708421 AGCAAATACATGTCAAATCCAGCT 59.292 37.500 0.00 0.00 0.00 4.24
2584 11219 6.592166 CAAACGGTTCAATACGTAGCTAAAA 58.408 36.000 0.08 0.00 43.31 1.52
2594 11229 5.043189 AGCTAAAGCAAACGGTTCAATAC 57.957 39.130 4.54 0.00 45.16 1.89
2604 11239 5.122554 GGAGAAGGAACTAGCTAAAGCAAAC 59.877 44.000 4.54 0.00 40.93 2.93
2612 11247 2.585900 TGAGGGGAGAAGGAACTAGCTA 59.414 50.000 0.00 0.00 38.49 3.32
2613 11248 1.362932 TGAGGGGAGAAGGAACTAGCT 59.637 52.381 0.00 0.00 38.49 3.32
2628 11263 1.022735 GAATGTGAGCATGCTGAGGG 58.977 55.000 28.27 0.00 35.15 4.30
2629 11264 2.039818 AGAATGTGAGCATGCTGAGG 57.960 50.000 28.27 0.00 39.49 3.86
2641 11276 5.575606 GCAATCAATGGACAAGAAGAATGTG 59.424 40.000 0.00 0.00 0.00 3.21
2654 11291 7.338710 AGTAGCTAACTAAAGCAATCAATGGA 58.661 34.615 0.00 0.00 45.30 3.41
2803 11452 6.762702 ATTCATTTGACATGATGCACACTA 57.237 33.333 0.00 0.00 0.00 2.74
2861 11511 3.942829 GCATGCTATCTAATGCACCCTA 58.057 45.455 11.37 0.00 46.75 3.53
2930 11580 1.714541 ATTCCACCAAACATGCCACA 58.285 45.000 0.00 0.00 0.00 4.17
2954 11604 4.202101 TGGTCAACTTACTGCACAAATTGG 60.202 41.667 0.00 0.00 0.00 3.16
3022 11678 3.187842 ACCCGAAGTTTCTAATCGCAAAC 59.812 43.478 0.00 0.00 35.35 2.93
3055 11711 6.009589 TGGTCTCATTTAGCAAAATCAGGAA 58.990 36.000 0.00 0.00 32.87 3.36
3090 11752 1.341080 AAGGGTGATGGCAAAACAGG 58.659 50.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.