Multiple sequence alignment - TraesCS4A01G423200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G423200 chr4A 100.000 2603 0 0 1 2603 693433780 693431178 0.000000e+00 4807.0
1 TraesCS4A01G423200 chr4A 84.854 1162 123 31 442 1594 693491537 693490420 0.000000e+00 1122.0
2 TraesCS4A01G423200 chr4A 81.848 1201 158 36 408 1601 693445303 693444156 0.000000e+00 955.0
3 TraesCS4A01G423200 chr4A 84.170 259 31 6 20 269 85250017 85249760 2.590000e-60 243.0
4 TraesCS4A01G423200 chr4A 79.651 344 49 7 1890 2225 693450058 693449728 7.250000e-56 228.0
5 TraesCS4A01G423200 chr4A 83.019 106 8 5 1909 2004 693489445 693489340 1.280000e-13 87.9
6 TraesCS4A01G423200 chr7D 83.391 1162 131 32 442 1594 33105803 33104695 0.000000e+00 1020.0
7 TraesCS4A01G423200 chr7D 77.399 1292 171 63 424 1666 33089086 33087867 0.000000e+00 656.0
8 TraesCS4A01G423200 chr7D 92.677 437 28 3 2167 2603 33094434 33094002 6.120000e-176 627.0
9 TraesCS4A01G423200 chr7D 93.237 414 16 5 1756 2167 33095015 33094612 1.330000e-167 599.0
10 TraesCS4A01G423200 chr7D 87.606 355 23 2 1323 1662 33095712 33095364 2.430000e-105 392.0
11 TraesCS4A01G423200 chr7D 83.729 295 32 7 400 694 33098900 33098622 5.520000e-67 265.0
12 TraesCS4A01G423200 chr7D 77.083 432 75 14 1176 1594 33056496 33056076 7.250000e-56 228.0
13 TraesCS4A01G423200 chr7D 94.000 50 2 1 1888 1937 33103735 33103687 9.990000e-10 75.0
14 TraesCS4A01G423200 chr7A 81.373 1165 162 31 446 1601 33426219 33425101 0.000000e+00 898.0
15 TraesCS4A01G423200 chr7A 82.104 1112 132 37 450 1552 33419785 33418732 0.000000e+00 889.0
16 TraesCS4A01G423200 chr7A 80.100 1206 152 46 400 1594 33449635 33448507 0.000000e+00 817.0
17 TraesCS4A01G423200 chr7A 79.517 1118 156 36 484 1590 33374084 33373029 0.000000e+00 728.0
18 TraesCS4A01G423200 chr7A 87.371 388 24 9 409 794 33455418 33455054 3.100000e-114 422.0
19 TraesCS4A01G423200 chr7A 83.810 420 52 10 1180 1594 33455056 33454648 4.060000e-103 385.0
20 TraesCS4A01G423200 chr7A 82.528 269 31 9 19 283 652304873 652305129 3.370000e-54 222.0
21 TraesCS4A01G423200 chr7A 94.000 50 2 1 1888 1937 33453689 33453641 9.990000e-10 75.0
22 TraesCS4A01G423200 chr5D 85.223 291 32 4 1 280 406617891 406617601 3.280000e-74 289.0
23 TraesCS4A01G423200 chr5D 84.672 274 31 7 1 270 174279504 174279238 1.990000e-66 263.0
24 TraesCS4A01G423200 chr1D 84.155 284 36 5 1 280 240119263 240118985 1.540000e-67 267.0
25 TraesCS4A01G423200 chr2A 84.307 274 33 6 1 265 533527761 533527489 2.570000e-65 259.0
26 TraesCS4A01G423200 chr2A 83.942 274 24 7 1 269 469199978 469199720 7.200000e-61 244.0
27 TraesCS4A01G423200 chr2B 84.083 289 21 9 1 266 230892595 230892881 3.320000e-64 255.0
28 TraesCS4A01G423200 chr2B 93.103 58 1 2 259 314 246120931 246120987 5.970000e-12 82.4
29 TraesCS4A01G423200 chr1B 85.490 255 24 5 34 277 330990440 330990692 1.200000e-63 254.0
30 TraesCS4A01G423200 chr6D 85.081 248 27 3 33 270 327112365 327112612 7.200000e-61 244.0
31 TraesCS4A01G423200 chr7B 88.889 72 8 0 263 334 724982995 724982924 3.570000e-14 89.8
32 TraesCS4A01G423200 chr7B 85.882 85 5 2 259 336 60081639 60081723 1.660000e-12 84.2
33 TraesCS4A01G423200 chr6B 87.671 73 9 0 264 336 716014121 716014193 4.620000e-13 86.1
34 TraesCS4A01G423200 chr4B 91.935 62 4 1 253 314 44367201 44367261 4.620000e-13 86.1
35 TraesCS4A01G423200 chr2D 89.831 59 5 1 257 314 553913212 553913270 9.990000e-10 75.0
36 TraesCS4A01G423200 chr2D 89.474 57 6 0 281 337 65637116 65637172 3.590000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G423200 chr4A 693431178 693433780 2602 True 4807.00 4807 100.000000 1 2603 1 chr4A.!!$R2 2602
1 TraesCS4A01G423200 chr4A 693444156 693445303 1147 True 955.00 955 81.848000 408 1601 1 chr4A.!!$R3 1193
2 TraesCS4A01G423200 chr4A 693489340 693491537 2197 True 604.95 1122 83.936500 442 2004 2 chr4A.!!$R5 1562
3 TraesCS4A01G423200 chr7D 33087867 33089086 1219 True 656.00 656 77.399000 424 1666 1 chr7D.!!$R2 1242
4 TraesCS4A01G423200 chr7D 33103687 33105803 2116 True 547.50 1020 88.695500 442 1937 2 chr7D.!!$R4 1495
5 TraesCS4A01G423200 chr7D 33094002 33098900 4898 True 470.75 627 89.312250 400 2603 4 chr7D.!!$R3 2203
6 TraesCS4A01G423200 chr7A 33425101 33426219 1118 True 898.00 898 81.373000 446 1601 1 chr7A.!!$R3 1155
7 TraesCS4A01G423200 chr7A 33418732 33419785 1053 True 889.00 889 82.104000 450 1552 1 chr7A.!!$R2 1102
8 TraesCS4A01G423200 chr7A 33448507 33449635 1128 True 817.00 817 80.100000 400 1594 1 chr7A.!!$R4 1194
9 TraesCS4A01G423200 chr7A 33373029 33374084 1055 True 728.00 728 79.517000 484 1590 1 chr7A.!!$R1 1106
10 TraesCS4A01G423200 chr7A 33453641 33455418 1777 True 294.00 422 88.393667 409 1937 3 chr7A.!!$R5 1528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.180406 TCGGGCCTAGATTTTGAGCC 59.820 55.0 0.84 0.0 43.09 4.70 F
694 695 0.251634 CAGACTTCTCCTGCCCCTTC 59.748 60.0 0.00 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1482 0.468648 GTATCCACCAGCTACACCCC 59.531 60.0 0.00 0.0 0.00 4.95 R
2266 5189 0.603707 CAGGAGAACCAAGCGCTGAA 60.604 55.0 12.58 0.0 38.94 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.931292 TAGTCCTGGCCATGGGAA 57.069 55.556 15.05 0.00 33.01 3.97
18 19 2.620234 TAGTCCTGGCCATGGGAAG 58.380 57.895 15.05 0.00 33.01 3.46
19 20 1.635817 TAGTCCTGGCCATGGGAAGC 61.636 60.000 15.05 4.61 33.01 3.86
32 33 2.986979 GAAGCCCGGGCCGAAAAA 60.987 61.111 41.72 0.00 43.17 1.94
33 34 2.989253 AAGCCCGGGCCGAAAAAG 60.989 61.111 41.72 10.20 43.17 2.27
40 41 3.744719 GGCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 45.16 4.79
41 42 3.744719 GCCGAAAAAGCCCGACCC 61.745 66.667 0.00 0.00 0.00 4.46
42 43 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
89 90 3.780624 GCTCGGGCCTAGATTTTGA 57.219 52.632 9.63 0.00 0.00 2.69
90 91 1.587547 GCTCGGGCCTAGATTTTGAG 58.412 55.000 9.63 2.79 0.00 3.02
91 92 1.587547 CTCGGGCCTAGATTTTGAGC 58.412 55.000 0.84 0.00 0.00 4.26
92 93 0.180406 TCGGGCCTAGATTTTGAGCC 59.820 55.000 0.84 0.00 43.09 4.70
94 95 2.707902 GGCCTAGATTTTGAGCCCG 58.292 57.895 0.00 0.00 37.66 6.13
95 96 0.180406 GGCCTAGATTTTGAGCCCGA 59.820 55.000 0.00 0.00 37.66 5.14
96 97 1.408266 GGCCTAGATTTTGAGCCCGAA 60.408 52.381 0.00 0.00 37.66 4.30
97 98 1.943340 GCCTAGATTTTGAGCCCGAAG 59.057 52.381 0.00 0.00 0.00 3.79
98 99 2.420129 GCCTAGATTTTGAGCCCGAAGA 60.420 50.000 0.00 0.00 0.00 2.87
99 100 3.198872 CCTAGATTTTGAGCCCGAAGAC 58.801 50.000 0.00 0.00 0.00 3.01
100 101 2.115343 AGATTTTGAGCCCGAAGACC 57.885 50.000 0.00 0.00 0.00 3.85
101 102 0.727398 GATTTTGAGCCCGAAGACCG 59.273 55.000 0.00 0.00 38.18 4.79
123 124 3.782443 GAGCCCGGACCCATCGTT 61.782 66.667 0.73 0.00 0.00 3.85
124 125 3.325201 GAGCCCGGACCCATCGTTT 62.325 63.158 0.73 0.00 0.00 3.60
125 126 2.360726 GCCCGGACCCATCGTTTT 60.361 61.111 0.73 0.00 0.00 2.43
126 127 1.974875 GCCCGGACCCATCGTTTTT 60.975 57.895 0.73 0.00 0.00 1.94
127 128 1.880186 CCCGGACCCATCGTTTTTG 59.120 57.895 0.73 0.00 0.00 2.44
128 129 1.211709 CCGGACCCATCGTTTTTGC 59.788 57.895 0.00 0.00 0.00 3.68
129 130 1.519751 CCGGACCCATCGTTTTTGCA 61.520 55.000 0.00 0.00 0.00 4.08
130 131 0.525761 CGGACCCATCGTTTTTGCAT 59.474 50.000 0.00 0.00 0.00 3.96
131 132 1.067915 CGGACCCATCGTTTTTGCATT 60.068 47.619 0.00 0.00 0.00 3.56
132 133 2.609244 CGGACCCATCGTTTTTGCATTT 60.609 45.455 0.00 0.00 0.00 2.32
133 134 3.398406 GGACCCATCGTTTTTGCATTTT 58.602 40.909 0.00 0.00 0.00 1.82
134 135 3.812609 GGACCCATCGTTTTTGCATTTTT 59.187 39.130 0.00 0.00 0.00 1.94
135 136 4.084066 GGACCCATCGTTTTTGCATTTTTC 60.084 41.667 0.00 0.00 0.00 2.29
136 137 4.702831 ACCCATCGTTTTTGCATTTTTCT 58.297 34.783 0.00 0.00 0.00 2.52
137 138 4.511082 ACCCATCGTTTTTGCATTTTTCTG 59.489 37.500 0.00 0.00 0.00 3.02
138 139 4.749099 CCCATCGTTTTTGCATTTTTCTGA 59.251 37.500 0.00 0.00 0.00 3.27
139 140 5.236047 CCCATCGTTTTTGCATTTTTCTGAA 59.764 36.000 0.00 0.00 0.00 3.02
140 141 6.357198 CCATCGTTTTTGCATTTTTCTGAAG 58.643 36.000 0.00 0.00 0.00 3.02
141 142 5.964887 TCGTTTTTGCATTTTTCTGAAGG 57.035 34.783 0.00 0.00 0.00 3.46
142 143 5.415221 TCGTTTTTGCATTTTTCTGAAGGT 58.585 33.333 0.00 0.00 0.00 3.50
143 144 5.518487 TCGTTTTTGCATTTTTCTGAAGGTC 59.482 36.000 0.00 0.00 0.00 3.85
144 145 5.554324 CGTTTTTGCATTTTTCTGAAGGTCG 60.554 40.000 0.00 0.00 0.00 4.79
145 146 3.641437 TTGCATTTTTCTGAAGGTCGG 57.359 42.857 0.00 0.00 0.00 4.79
146 147 1.885887 TGCATTTTTCTGAAGGTCGGG 59.114 47.619 0.00 0.00 0.00 5.14
147 148 1.402852 GCATTTTTCTGAAGGTCGGGC 60.403 52.381 0.00 0.00 0.00 6.13
148 149 1.202348 CATTTTTCTGAAGGTCGGGCC 59.798 52.381 0.00 0.00 37.58 5.80
149 150 0.887387 TTTTTCTGAAGGTCGGGCCG 60.887 55.000 22.51 22.51 43.70 6.13
150 151 2.741486 TTTTCTGAAGGTCGGGCCGG 62.741 60.000 27.98 8.04 43.70 6.13
151 152 4.689549 TCTGAAGGTCGGGCCGGA 62.690 66.667 27.98 9.29 43.70 5.14
152 153 4.148825 CTGAAGGTCGGGCCGGAG 62.149 72.222 27.98 8.69 43.70 4.63
170 171 4.068280 CCCAACGGGCTTTTACGT 57.932 55.556 0.00 0.00 46.48 3.57
171 172 1.577421 CCCAACGGGCTTTTACGTG 59.423 57.895 0.00 0.00 43.31 4.49
172 173 1.167781 CCCAACGGGCTTTTACGTGT 61.168 55.000 0.00 0.00 43.31 4.49
173 174 0.664224 CCAACGGGCTTTTACGTGTT 59.336 50.000 0.00 0.00 43.31 3.32
174 175 1.334329 CCAACGGGCTTTTACGTGTTC 60.334 52.381 0.00 0.00 43.31 3.18
175 176 0.582960 AACGGGCTTTTACGTGTTCG 59.417 50.000 0.00 0.00 43.31 3.95
176 177 1.223417 ACGGGCTTTTACGTGTTCGG 61.223 55.000 0.00 0.00 42.39 4.30
177 178 1.871077 GGGCTTTTACGTGTTCGGG 59.129 57.895 0.00 0.00 41.85 5.14
178 179 1.208358 GGCTTTTACGTGTTCGGGC 59.792 57.895 0.00 0.00 41.85 6.13
179 180 1.208358 GCTTTTACGTGTTCGGGCC 59.792 57.895 0.00 0.00 41.85 5.80
180 181 1.871077 CTTTTACGTGTTCGGGCCC 59.129 57.895 13.57 13.57 41.85 5.80
181 182 1.903783 CTTTTACGTGTTCGGGCCCG 61.904 60.000 39.13 39.13 41.85 6.13
182 183 3.880162 TTTACGTGTTCGGGCCCGG 62.880 63.158 42.36 28.31 41.85 5.73
199 200 4.500265 GCTCAGGCCCAGAAAACA 57.500 55.556 0.00 0.00 0.00 2.83
200 201 2.261215 GCTCAGGCCCAGAAAACAG 58.739 57.895 0.00 0.00 0.00 3.16
201 202 1.246737 GCTCAGGCCCAGAAAACAGG 61.247 60.000 0.00 0.00 0.00 4.00
202 203 1.228552 TCAGGCCCAGAAAACAGGC 60.229 57.895 0.00 0.00 46.37 4.85
205 206 3.373565 GCCCAGAAAACAGGCCCG 61.374 66.667 0.00 0.00 41.00 6.13
206 207 2.434331 CCCAGAAAACAGGCCCGA 59.566 61.111 0.00 0.00 0.00 5.14
207 208 1.000896 CCCAGAAAACAGGCCCGAT 60.001 57.895 0.00 0.00 0.00 4.18
208 209 1.315257 CCCAGAAAACAGGCCCGATG 61.315 60.000 0.00 0.00 0.00 3.84
209 210 1.315257 CCAGAAAACAGGCCCGATGG 61.315 60.000 0.00 0.00 0.00 3.51
241 242 4.107029 GCCCGGGCCTAAGTTTTT 57.893 55.556 36.64 0.00 34.56 1.94
255 256 2.725008 TTTTTGCGTCGGGCTTGG 59.275 55.556 0.00 0.00 44.05 3.61
256 257 3.492311 TTTTTGCGTCGGGCTTGGC 62.492 57.895 0.00 0.00 44.05 4.52
257 258 4.947147 TTTGCGTCGGGCTTGGCT 62.947 61.111 0.00 0.00 44.05 4.75
258 259 3.538785 TTTGCGTCGGGCTTGGCTA 62.539 57.895 0.00 0.00 44.05 3.93
259 260 3.950794 TTGCGTCGGGCTTGGCTAG 62.951 63.158 0.00 0.00 44.05 3.42
302 303 2.725008 TTTTTGCGTCGGGCTTGG 59.275 55.556 0.00 0.00 44.05 3.61
303 304 2.122167 TTTTTGCGTCGGGCTTGGT 61.122 52.632 0.00 0.00 44.05 3.67
304 305 1.668101 TTTTTGCGTCGGGCTTGGTT 61.668 50.000 0.00 0.00 44.05 3.67
305 306 0.818445 TTTTGCGTCGGGCTTGGTTA 60.818 50.000 0.00 0.00 44.05 2.85
306 307 1.231958 TTTGCGTCGGGCTTGGTTAG 61.232 55.000 0.00 0.00 44.05 2.34
307 308 2.818274 GCGTCGGGCTTGGTTAGG 60.818 66.667 0.00 0.00 39.11 2.69
314 315 4.733542 GCTTGGTTAGGCCCGGCA 62.734 66.667 12.58 0.00 35.06 5.69
315 316 2.275418 CTTGGTTAGGCCCGGCAT 59.725 61.111 12.58 6.81 36.04 4.40
316 317 2.044451 TTGGTTAGGCCCGGCATG 60.044 61.111 12.58 0.00 36.04 4.06
317 318 2.550699 CTTGGTTAGGCCCGGCATGA 62.551 60.000 12.58 0.00 36.04 3.07
318 319 2.203209 GGTTAGGCCCGGCATGAG 60.203 66.667 12.58 0.00 0.00 2.90
319 320 2.203209 GTTAGGCCCGGCATGAGG 60.203 66.667 12.58 0.00 0.00 3.86
320 321 2.690881 TTAGGCCCGGCATGAGGT 60.691 61.111 12.58 0.00 0.00 3.85
321 322 2.305607 TTAGGCCCGGCATGAGGTT 61.306 57.895 12.58 0.00 0.00 3.50
322 323 1.858739 TTAGGCCCGGCATGAGGTTT 61.859 55.000 12.58 0.00 0.00 3.27
323 324 2.550699 TAGGCCCGGCATGAGGTTTG 62.551 60.000 12.58 0.00 0.00 2.93
324 325 3.451894 GCCCGGCATGAGGTTTGG 61.452 66.667 3.91 0.00 0.00 3.28
325 326 3.451894 CCCGGCATGAGGTTTGGC 61.452 66.667 0.00 0.00 36.38 4.52
326 327 3.451894 CCGGCATGAGGTTTGGCC 61.452 66.667 0.00 0.00 42.98 5.36
327 328 2.676121 CGGCATGAGGTTTGGCCA 60.676 61.111 0.00 0.00 46.75 5.36
328 329 2.053865 CGGCATGAGGTTTGGCCAT 61.054 57.895 6.09 0.00 46.75 4.40
329 330 1.518774 GGCATGAGGTTTGGCCATG 59.481 57.895 6.09 0.00 45.70 3.66
330 331 1.259840 GGCATGAGGTTTGGCCATGT 61.260 55.000 6.09 0.00 45.70 3.21
331 332 1.473258 GCATGAGGTTTGGCCATGTA 58.527 50.000 6.09 0.00 39.69 2.29
332 333 2.034124 GCATGAGGTTTGGCCATGTAT 58.966 47.619 6.09 0.00 39.69 2.29
333 334 3.221771 GCATGAGGTTTGGCCATGTATA 58.778 45.455 6.09 0.00 39.69 1.47
334 335 3.254166 GCATGAGGTTTGGCCATGTATAG 59.746 47.826 6.09 0.00 39.69 1.31
335 336 2.930950 TGAGGTTTGGCCATGTATAGC 58.069 47.619 6.09 0.00 40.61 2.97
336 337 2.509548 TGAGGTTTGGCCATGTATAGCT 59.490 45.455 6.09 4.97 40.61 3.32
337 338 2.880890 GAGGTTTGGCCATGTATAGCTG 59.119 50.000 6.09 0.00 40.61 4.24
338 339 1.338020 GGTTTGGCCATGTATAGCTGC 59.662 52.381 6.09 0.00 37.17 5.25
339 340 2.301346 GTTTGGCCATGTATAGCTGCT 58.699 47.619 6.09 7.57 0.00 4.24
340 341 1.971481 TTGGCCATGTATAGCTGCTG 58.029 50.000 13.43 0.00 0.00 4.41
341 342 0.839277 TGGCCATGTATAGCTGCTGT 59.161 50.000 13.43 8.50 0.00 4.40
342 343 2.046292 TGGCCATGTATAGCTGCTGTA 58.954 47.619 13.43 7.30 0.00 2.74
343 344 2.639347 TGGCCATGTATAGCTGCTGTAT 59.361 45.455 13.43 0.76 0.00 2.29
344 345 3.005554 GGCCATGTATAGCTGCTGTATG 58.994 50.000 13.43 7.27 0.00 2.39
345 346 2.417933 GCCATGTATAGCTGCTGTATGC 59.582 50.000 13.43 8.17 43.25 3.14
346 347 3.867600 GCCATGTATAGCTGCTGTATGCT 60.868 47.826 13.43 0.00 43.37 3.79
347 348 3.683340 CCATGTATAGCTGCTGTATGCTG 59.317 47.826 13.43 8.72 43.37 4.41
348 349 4.313282 CATGTATAGCTGCTGTATGCTGT 58.687 43.478 13.43 0.00 43.37 4.40
349 350 5.473039 CATGTATAGCTGCTGTATGCTGTA 58.527 41.667 13.43 0.00 43.37 2.74
350 351 5.126396 TGTATAGCTGCTGTATGCTGTAG 57.874 43.478 13.43 1.85 43.37 2.74
351 352 2.515926 TAGCTGCTGTATGCTGTAGC 57.484 50.000 19.26 19.26 46.69 3.58
352 353 1.930100 GCTGCTGTATGCTGTAGCG 59.070 57.895 13.70 0.00 45.83 4.26
353 354 1.930100 CTGCTGTATGCTGTAGCGC 59.070 57.895 0.00 0.00 45.83 5.92
354 355 0.529337 CTGCTGTATGCTGTAGCGCT 60.529 55.000 17.26 17.26 45.83 5.92
355 356 0.528466 TGCTGTATGCTGTAGCGCTC 60.528 55.000 16.34 6.54 45.83 5.03
356 357 1.218230 GCTGTATGCTGTAGCGCTCC 61.218 60.000 16.34 1.51 45.83 4.70
357 358 0.598680 CTGTATGCTGTAGCGCTCCC 60.599 60.000 16.34 6.62 45.83 4.30
358 359 1.301009 GTATGCTGTAGCGCTCCCC 60.301 63.158 16.34 3.52 45.83 4.81
359 360 2.507854 TATGCTGTAGCGCTCCCCC 61.508 63.158 16.34 1.55 45.83 5.40
361 362 4.096003 GCTGTAGCGCTCCCCCAA 62.096 66.667 16.34 0.00 0.00 4.12
362 363 2.668632 CTGTAGCGCTCCCCCAAA 59.331 61.111 16.34 0.00 0.00 3.28
363 364 1.224592 CTGTAGCGCTCCCCCAAAT 59.775 57.895 16.34 0.00 0.00 2.32
364 365 0.815615 CTGTAGCGCTCCCCCAAATC 60.816 60.000 16.34 0.00 0.00 2.17
365 366 1.271840 TGTAGCGCTCCCCCAAATCT 61.272 55.000 16.34 0.00 0.00 2.40
366 367 0.533085 GTAGCGCTCCCCCAAATCTC 60.533 60.000 16.34 0.00 0.00 2.75
367 368 0.980754 TAGCGCTCCCCCAAATCTCA 60.981 55.000 16.34 0.00 0.00 3.27
368 369 1.152881 GCGCTCCCCCAAATCTCAT 60.153 57.895 0.00 0.00 0.00 2.90
369 370 0.753111 GCGCTCCCCCAAATCTCATT 60.753 55.000 0.00 0.00 0.00 2.57
370 371 1.312815 CGCTCCCCCAAATCTCATTC 58.687 55.000 0.00 0.00 0.00 2.67
371 372 1.133976 CGCTCCCCCAAATCTCATTCT 60.134 52.381 0.00 0.00 0.00 2.40
372 373 2.580962 GCTCCCCCAAATCTCATTCTC 58.419 52.381 0.00 0.00 0.00 2.87
373 374 2.092212 GCTCCCCCAAATCTCATTCTCA 60.092 50.000 0.00 0.00 0.00 3.27
374 375 3.436180 GCTCCCCCAAATCTCATTCTCAT 60.436 47.826 0.00 0.00 0.00 2.90
375 376 4.396522 CTCCCCCAAATCTCATTCTCATC 58.603 47.826 0.00 0.00 0.00 2.92
376 377 3.139025 TCCCCCAAATCTCATTCTCATCC 59.861 47.826 0.00 0.00 0.00 3.51
377 378 3.139770 CCCCCAAATCTCATTCTCATCCT 59.860 47.826 0.00 0.00 0.00 3.24
378 379 4.352001 CCCCCAAATCTCATTCTCATCCTA 59.648 45.833 0.00 0.00 0.00 2.94
379 380 5.514484 CCCCCAAATCTCATTCTCATCCTAG 60.514 48.000 0.00 0.00 0.00 3.02
380 381 5.072872 CCCCAAATCTCATTCTCATCCTAGT 59.927 44.000 0.00 0.00 0.00 2.57
381 382 6.410157 CCCCAAATCTCATTCTCATCCTAGTT 60.410 42.308 0.00 0.00 0.00 2.24
382 383 7.059156 CCCAAATCTCATTCTCATCCTAGTTT 58.941 38.462 0.00 0.00 0.00 2.66
383 384 8.213679 CCCAAATCTCATTCTCATCCTAGTTTA 58.786 37.037 0.00 0.00 0.00 2.01
384 385 9.270640 CCAAATCTCATTCTCATCCTAGTTTAG 57.729 37.037 0.00 0.00 0.00 1.85
418 419 4.050037 AGAAAATCTCATCCCATCCTCCA 58.950 43.478 0.00 0.00 0.00 3.86
420 421 2.811322 ATCTCATCCCATCCTCCACT 57.189 50.000 0.00 0.00 0.00 4.00
603 604 4.995594 CCTCCTGGGCATCCTTTC 57.004 61.111 0.00 0.00 0.00 2.62
608 609 3.643595 CTGGGCATCCTTTCCGGCA 62.644 63.158 0.00 0.00 0.00 5.69
610 611 2.272146 GGCATCCTTTCCGGCAGA 59.728 61.111 0.00 0.00 0.00 4.26
614 615 0.539051 CATCCTTTCCGGCAGACTCT 59.461 55.000 0.00 0.00 0.00 3.24
615 616 1.757118 CATCCTTTCCGGCAGACTCTA 59.243 52.381 0.00 0.00 0.00 2.43
644 645 3.966543 CGCCCCACCCTTCACCTT 61.967 66.667 0.00 0.00 0.00 3.50
645 646 2.035783 GCCCCACCCTTCACCTTC 59.964 66.667 0.00 0.00 0.00 3.46
646 647 2.840753 GCCCCACCCTTCACCTTCA 61.841 63.158 0.00 0.00 0.00 3.02
687 688 1.153939 CCGACGCAGACTTCTCCTG 60.154 63.158 0.00 0.00 34.88 3.86
692 693 4.143740 CAGACTTCTCCTGCCCCT 57.856 61.111 0.00 0.00 0.00 4.79
693 694 2.381445 CAGACTTCTCCTGCCCCTT 58.619 57.895 0.00 0.00 0.00 3.95
694 695 0.251634 CAGACTTCTCCTGCCCCTTC 59.748 60.000 0.00 0.00 0.00 3.46
696 697 2.245438 GACTTCTCCTGCCCCTTCGG 62.245 65.000 0.00 0.00 0.00 4.30
794 807 4.162690 GGAGGGCAGCGATCCGTT 62.163 66.667 0.00 0.00 0.00 4.44
963 976 4.821589 CTTGCTCCTCCCGGCGTC 62.822 72.222 6.01 0.00 0.00 5.19
1047 1060 1.061421 CTCGTCCTCTTCGTCTTCTCG 59.939 57.143 0.00 0.00 0.00 4.04
1083 1096 0.530870 GGCTCGCTGATCCTGTTACC 60.531 60.000 0.00 0.00 0.00 2.85
1091 1104 2.673368 CTGATCCTGTTACCTTTGACGC 59.327 50.000 0.00 0.00 0.00 5.19
1092 1105 2.301870 TGATCCTGTTACCTTTGACGCT 59.698 45.455 0.00 0.00 0.00 5.07
1107 1120 3.381136 GCTTTTGGATGCGGGGCA 61.381 61.111 0.00 0.00 44.86 5.36
1153 1172 1.136891 GCTTCTGTTGGCAGGTTTGTT 59.863 47.619 0.00 0.00 42.78 2.83
1154 1173 2.360801 GCTTCTGTTGGCAGGTTTGTTA 59.639 45.455 0.00 0.00 42.78 2.41
1155 1174 3.005791 GCTTCTGTTGGCAGGTTTGTTAT 59.994 43.478 0.00 0.00 42.78 1.89
1156 1175 4.549458 CTTCTGTTGGCAGGTTTGTTATG 58.451 43.478 0.00 0.00 42.78 1.90
1157 1176 3.826524 TCTGTTGGCAGGTTTGTTATGA 58.173 40.909 0.00 0.00 42.78 2.15
1158 1177 4.211125 TCTGTTGGCAGGTTTGTTATGAA 58.789 39.130 0.00 0.00 42.78 2.57
1159 1178 4.278170 TCTGTTGGCAGGTTTGTTATGAAG 59.722 41.667 0.00 0.00 42.78 3.02
1164 1183 4.458989 TGGCAGGTTTGTTATGAAGATGAC 59.541 41.667 0.00 0.00 0.00 3.06
1170 1189 2.809446 TGTTATGAAGATGACGCCGAG 58.191 47.619 0.00 0.00 0.00 4.63
1172 1191 3.068165 TGTTATGAAGATGACGCCGAGAT 59.932 43.478 0.00 0.00 0.00 2.75
1243 1262 2.844362 CTCCGCCTGGCCCTGATA 60.844 66.667 14.12 0.00 34.14 2.15
1304 1347 3.850122 TGGGATGCTTACTATCGATCG 57.150 47.619 9.36 9.36 0.00 3.69
1307 1350 4.082733 TGGGATGCTTACTATCGATCGAAG 60.083 45.833 23.50 20.80 0.00 3.79
1321 1370 1.210870 TCGAAGTAAACGTGGTGCAC 58.789 50.000 8.80 8.80 0.00 4.57
1325 1374 1.144969 AGTAAACGTGGTGCACATCG 58.855 50.000 24.00 24.00 33.40 3.84
1344 1393 2.686405 TCGTCTCTTGTATGCCGTACAT 59.314 45.455 0.00 0.00 42.63 2.29
1346 1395 3.486108 CGTCTCTTGTATGCCGTACATTC 59.514 47.826 0.00 0.00 42.63 2.67
1350 1399 1.830086 TGTATGCCGTACATTCGTCG 58.170 50.000 0.00 0.00 38.37 5.12
1419 1468 4.023193 CCTTTGCCGGAAAATTATCGCTAT 60.023 41.667 8.42 0.00 0.00 2.97
1420 1469 5.507315 CCTTTGCCGGAAAATTATCGCTATT 60.507 40.000 8.42 0.00 0.00 1.73
1421 1470 4.481930 TGCCGGAAAATTATCGCTATTG 57.518 40.909 5.05 0.00 0.00 1.90
1422 1471 3.234386 GCCGGAAAATTATCGCTATTGC 58.766 45.455 5.05 0.00 0.00 3.56
1423 1472 3.304391 GCCGGAAAATTATCGCTATTGCA 60.304 43.478 5.05 0.00 39.64 4.08
1424 1473 4.615912 GCCGGAAAATTATCGCTATTGCAT 60.616 41.667 5.05 0.00 39.64 3.96
1461 1510 3.725634 AGCTGGTGGATACTTACTCCTT 58.274 45.455 0.00 0.00 33.69 3.36
1468 1517 3.965347 TGGATACTTACTCCTTACTGGGC 59.035 47.826 0.00 0.00 33.69 5.36
1469 1518 3.005578 GGATACTTACTCCTTACTGGGCG 59.994 52.174 0.00 0.00 36.20 6.13
1470 1519 0.535797 ACTTACTCCTTACTGGGCGC 59.464 55.000 0.00 0.00 36.20 6.53
1486 1535 1.659794 CGCCCAGAAAACAACAGGG 59.340 57.895 0.00 0.00 42.55 4.45
1529 1578 1.377536 GATCTCCAGACTTTGCAGGC 58.622 55.000 0.00 0.00 0.00 4.85
1590 1640 0.389391 ACTTGTATGCCGATCTCCCG 59.611 55.000 0.00 0.00 0.00 5.14
1620 1685 1.168714 GAACTGGTAAGCTTGCCCTG 58.831 55.000 28.13 22.28 31.21 4.45
1630 1695 2.728007 AGCTTGCCCTGGATCTTTAAC 58.272 47.619 0.00 0.00 0.00 2.01
1632 1697 2.424956 GCTTGCCCTGGATCTTTAACTG 59.575 50.000 0.00 0.00 0.00 3.16
1636 1701 2.424956 GCCCTGGATCTTTAACTGCTTG 59.575 50.000 0.00 0.00 0.00 4.01
1639 1704 4.156739 CCCTGGATCTTTAACTGCTTGTTC 59.843 45.833 0.00 0.00 39.89 3.18
1642 1707 5.376625 TGGATCTTTAACTGCTTGTTCTGT 58.623 37.500 0.00 0.00 39.89 3.41
1643 1708 5.827797 TGGATCTTTAACTGCTTGTTCTGTT 59.172 36.000 0.00 0.00 39.89 3.16
1666 1733 5.694231 TGCATAGGACATTGCAATATGAC 57.306 39.130 18.88 8.25 45.30 3.06
1673 1755 5.481473 AGGACATTGCAATATGACTTTTGGT 59.519 36.000 12.53 1.29 0.00 3.67
1676 1759 6.332630 ACATTGCAATATGACTTTTGGTAGC 58.667 36.000 12.53 0.00 0.00 3.58
1682 1765 0.941542 TGACTTTTGGTAGCGTGCAC 59.058 50.000 6.82 6.82 0.00 4.57
1683 1766 0.237498 GACTTTTGGTAGCGTGCACC 59.763 55.000 12.15 4.10 36.54 5.01
1685 1768 0.040425 CTTTTGGTAGCGTGCACCAC 60.040 55.000 12.15 6.80 45.67 4.16
1703 1787 5.762045 CACCACCATTCTACTTTGACAAAG 58.238 41.667 23.41 23.41 44.10 2.77
1707 1791 5.301805 CACCATTCTACTTTGACAAAGGGTT 59.698 40.000 27.26 12.51 42.82 4.11
1715 1799 4.640647 ACTTTGACAAAGGGTTCTGAACTC 59.359 41.667 27.26 16.01 42.82 3.01
1716 1800 4.503714 TTGACAAAGGGTTCTGAACTCT 57.496 40.909 17.03 17.03 46.38 3.24
1717 1801 3.808728 TGACAAAGGGTTCTGAACTCTG 58.191 45.455 22.78 14.66 42.71 3.35
1718 1802 3.454447 TGACAAAGGGTTCTGAACTCTGA 59.546 43.478 22.78 3.44 42.71 3.27
1719 1803 4.103153 TGACAAAGGGTTCTGAACTCTGAT 59.897 41.667 22.78 12.59 42.71 2.90
1720 1804 4.392940 ACAAAGGGTTCTGAACTCTGATG 58.607 43.478 22.78 23.54 42.71 3.07
1721 1805 4.141390 ACAAAGGGTTCTGAACTCTGATGT 60.141 41.667 24.96 24.96 42.71 3.06
1723 1807 2.304180 AGGGTTCTGAACTCTGATGTGG 59.696 50.000 21.56 0.00 41.71 4.17
1728 1823 2.106338 TCTGAACTCTGATGTGGCCAAA 59.894 45.455 7.24 0.15 0.00 3.28
1736 1831 6.245408 ACTCTGATGTGGCCAAATTACTTTA 58.755 36.000 10.57 0.00 0.00 1.85
1742 1837 4.239304 GTGGCCAAATTACTTTAAACCCG 58.761 43.478 7.24 0.00 0.00 5.28
1760 2074 5.880054 ACCCGTTATAATGCTCATATTGC 57.120 39.130 0.00 0.00 0.00 3.56
1777 2091 3.876309 TTGCCTACTTTCCCTTCAGTT 57.124 42.857 0.00 0.00 0.00 3.16
1778 2092 4.986054 TTGCCTACTTTCCCTTCAGTTA 57.014 40.909 0.00 0.00 0.00 2.24
1779 2093 4.986054 TGCCTACTTTCCCTTCAGTTAA 57.014 40.909 0.00 0.00 0.00 2.01
1780 2094 4.906618 TGCCTACTTTCCCTTCAGTTAAG 58.093 43.478 0.00 0.00 34.73 1.85
1781 2095 3.690139 GCCTACTTTCCCTTCAGTTAAGC 59.310 47.826 0.00 0.00 33.49 3.09
1783 2097 4.938226 CCTACTTTCCCTTCAGTTAAGCTG 59.062 45.833 0.00 0.00 46.34 4.24
1784 2098 3.756117 ACTTTCCCTTCAGTTAAGCTGG 58.244 45.455 0.00 0.00 45.08 4.85
1785 2099 3.394606 ACTTTCCCTTCAGTTAAGCTGGA 59.605 43.478 0.00 0.00 45.08 3.86
1787 2101 4.657814 TTCCCTTCAGTTAAGCTGGATT 57.342 40.909 0.00 0.00 45.08 3.01
1789 2103 4.335416 TCCCTTCAGTTAAGCTGGATTTG 58.665 43.478 0.00 0.00 45.08 2.32
1790 2104 4.042809 TCCCTTCAGTTAAGCTGGATTTGA 59.957 41.667 0.00 0.00 45.08 2.69
1791 2105 4.156739 CCCTTCAGTTAAGCTGGATTTGAC 59.843 45.833 0.00 0.00 45.08 3.18
1792 2106 4.761739 CCTTCAGTTAAGCTGGATTTGACA 59.238 41.667 0.00 0.00 45.08 3.58
1794 2108 5.885230 TCAGTTAAGCTGGATTTGACATG 57.115 39.130 0.00 0.00 45.08 3.21
1797 2111 7.112122 TCAGTTAAGCTGGATTTGACATGTAT 58.888 34.615 0.00 0.00 45.08 2.29
1798 2112 7.611467 TCAGTTAAGCTGGATTTGACATGTATT 59.389 33.333 0.00 0.00 45.08 1.89
1799 2113 8.246180 CAGTTAAGCTGGATTTGACATGTATTT 58.754 33.333 0.00 0.00 41.42 1.40
1801 2115 9.076596 GTTAAGCTGGATTTGACATGTATTTTC 57.923 33.333 0.00 0.00 0.00 2.29
1803 2117 5.954150 AGCTGGATTTGACATGTATTTTCCT 59.046 36.000 0.00 0.00 0.00 3.36
1804 2118 6.096001 AGCTGGATTTGACATGTATTTTCCTC 59.904 38.462 0.00 1.15 0.00 3.71
1855 2501 4.678256 TGGTGCCATTTTAGGTGGAATAA 58.322 39.130 0.00 0.00 39.12 1.40
1879 4602 6.356556 ACTATGTCTGCTAAATTATGCCACA 58.643 36.000 0.99 4.34 0.00 4.17
1880 4603 6.828273 ACTATGTCTGCTAAATTATGCCACAA 59.172 34.615 7.86 0.00 0.00 3.33
1881 4604 6.720112 ATGTCTGCTAAATTATGCCACAAT 57.280 33.333 7.86 0.00 0.00 2.71
1882 4605 6.528537 TGTCTGCTAAATTATGCCACAATT 57.471 33.333 0.99 0.00 0.00 2.32
1883 4606 6.934056 TGTCTGCTAAATTATGCCACAATTT 58.066 32.000 0.00 0.00 38.69 1.82
1884 4607 7.385267 TGTCTGCTAAATTATGCCACAATTTT 58.615 30.769 0.00 0.00 36.99 1.82
1885 4608 7.877097 TGTCTGCTAAATTATGCCACAATTTTT 59.123 29.630 0.00 0.00 36.99 1.94
1957 4701 5.506317 GCTTGAACTTGCAACTGTAACTGAT 60.506 40.000 0.00 0.00 0.00 2.90
2039 4784 6.092670 GCATGAAAAGCTGAGACATACACTAA 59.907 38.462 0.00 0.00 0.00 2.24
2078 4823 6.101150 ACATATGTCTAGCCTAATGGGAAACA 59.899 38.462 1.41 0.00 37.23 2.83
2079 4824 5.653255 ATGTCTAGCCTAATGGGAAACAT 57.347 39.130 0.00 0.00 43.07 2.71
2080 4825 4.780815 TGTCTAGCCTAATGGGAAACATG 58.219 43.478 0.00 0.00 40.44 3.21
2081 4826 4.473196 TGTCTAGCCTAATGGGAAACATGA 59.527 41.667 0.00 0.00 40.44 3.07
2082 4827 5.059833 GTCTAGCCTAATGGGAAACATGAG 58.940 45.833 0.00 0.00 40.44 2.90
2083 4828 4.721776 TCTAGCCTAATGGGAAACATGAGT 59.278 41.667 0.00 0.00 40.44 3.41
2084 4829 5.903010 TCTAGCCTAATGGGAAACATGAGTA 59.097 40.000 0.00 0.00 40.44 2.59
2085 4830 4.781934 AGCCTAATGGGAAACATGAGTAC 58.218 43.478 0.00 0.00 40.44 2.73
2086 4831 4.227300 AGCCTAATGGGAAACATGAGTACA 59.773 41.667 0.00 0.00 40.44 2.90
2090 4835 6.260936 CCTAATGGGAAACATGAGTACATGAC 59.739 42.308 15.53 7.41 45.70 3.06
2145 4890 3.397482 GAATAGATGGCAAGACGATGCT 58.603 45.455 11.18 0.00 45.68 3.79
2155 4900 3.433615 GCAAGACGATGCTAGTTTCACTT 59.566 43.478 0.00 0.00 43.06 3.16
2158 4903 6.347402 GCAAGACGATGCTAGTTTCACTTAAA 60.347 38.462 0.00 0.00 43.06 1.52
2185 5108 2.079925 CAAGACCAAAGGCACTAGAGC 58.920 52.381 3.21 3.21 38.49 4.09
2208 5131 4.704057 CCTCTGATTTTCCTTTGGAAGAGG 59.296 45.833 13.63 13.63 43.06 3.69
2224 5147 0.251209 GAGGGAAGTGGGGTTGGAAC 60.251 60.000 0.00 0.00 0.00 3.62
2235 5158 2.975799 TTGGAACGCAACGCCCTC 60.976 61.111 0.00 0.00 0.00 4.30
2264 5187 5.233988 TCCCCAATTTCACTAAAATTTGCG 58.766 37.500 0.00 0.00 43.51 4.85
2266 5189 4.690280 CCCAATTTCACTAAAATTTGCGCT 59.310 37.500 9.73 0.00 43.51 5.92
2282 5205 1.499502 GCTTCAGCGCTTGGTTCTC 59.500 57.895 7.50 0.00 0.00 2.87
2283 5206 1.916697 GCTTCAGCGCTTGGTTCTCC 61.917 60.000 7.50 0.00 0.00 3.71
2313 5236 3.953712 ATGACGTGATACTTGGTGTCA 57.046 42.857 0.00 0.00 40.24 3.58
2332 5255 2.037902 TCACATTCTCAGTGCCCGTTTA 59.962 45.455 0.00 0.00 36.93 2.01
2389 5312 9.534565 GCATTTACAAGTCTATCACTCTGATTA 57.465 33.333 0.00 0.00 38.26 1.75
2402 5325 8.764524 ATCACTCTGATTAAATAACGATAGGC 57.235 34.615 0.00 0.00 34.72 3.93
2418 5341 5.009410 ACGATAGGCAGTAGCTTATAACGTT 59.991 40.000 5.88 5.88 42.38 3.99
2518 5441 7.230466 GGTGAATACCAAATACTAGTTGTCG 57.770 40.000 0.00 0.00 46.71 4.35
2548 5471 9.174166 CATATATGAATTCAGATTCCATGCTGA 57.826 33.333 19.92 0.27 40.79 4.26
2566 5489 4.955450 TGCTGATGTTTATGCCCAGTAATT 59.045 37.500 0.00 0.00 0.00 1.40
2571 5494 7.327214 TGATGTTTATGCCCAGTAATTTTTCC 58.673 34.615 0.00 0.00 0.00 3.13
2573 5496 4.993029 TTATGCCCAGTAATTTTTCCGG 57.007 40.909 0.00 0.00 0.00 5.14
2586 5509 0.105224 TTTCCGGTCTTGAACTGCGA 59.895 50.000 0.00 0.00 32.41 5.10
2587 5510 0.320374 TTCCGGTCTTGAACTGCGAT 59.680 50.000 0.00 0.00 32.41 4.58
2588 5511 0.320374 TCCGGTCTTGAACTGCGATT 59.680 50.000 0.00 0.00 32.41 3.34
2589 5512 1.546923 TCCGGTCTTGAACTGCGATTA 59.453 47.619 0.00 0.00 32.41 1.75
2590 5513 2.028839 TCCGGTCTTGAACTGCGATTAA 60.029 45.455 0.00 0.00 32.41 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.988839 GCTTCCCATGGCCAGGACT 61.989 63.158 21.32 0.00 0.00 3.85
2 3 2.440980 GCTTCCCATGGCCAGGAC 60.441 66.667 21.32 2.25 0.00 3.85
3 4 3.743017 GGCTTCCCATGGCCAGGA 61.743 66.667 21.32 15.01 46.84 3.86
15 16 2.986979 TTTTTCGGCCCGGGCTTC 60.987 61.111 42.70 27.33 41.60 3.86
16 17 2.989253 CTTTTTCGGCCCGGGCTT 60.989 61.111 42.70 0.00 41.60 4.35
24 25 3.744719 GGGTCGGGCTTTTTCGGC 61.745 66.667 0.00 0.00 0.00 5.54
25 26 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
26 27 3.428282 CCGGGTCGGGCTTTTTCG 61.428 66.667 0.00 0.00 44.15 3.46
71 72 1.587547 CTCAAAATCTAGGCCCGAGC 58.412 55.000 0.00 0.00 38.76 5.03
72 73 1.587547 GCTCAAAATCTAGGCCCGAG 58.412 55.000 0.00 0.00 0.00 4.63
73 74 0.180406 GGCTCAAAATCTAGGCCCGA 59.820 55.000 0.00 0.00 37.12 5.14
74 75 2.707902 GGCTCAAAATCTAGGCCCG 58.292 57.895 0.00 0.00 37.12 6.13
77 78 1.943340 CTTCGGGCTCAAAATCTAGGC 59.057 52.381 0.00 0.00 37.55 3.93
78 79 3.198872 GTCTTCGGGCTCAAAATCTAGG 58.801 50.000 0.00 0.00 0.00 3.02
79 80 3.198872 GGTCTTCGGGCTCAAAATCTAG 58.801 50.000 0.00 0.00 0.00 2.43
80 81 2.418197 CGGTCTTCGGGCTCAAAATCTA 60.418 50.000 0.00 0.00 34.75 1.98
81 82 1.676014 CGGTCTTCGGGCTCAAAATCT 60.676 52.381 0.00 0.00 34.75 2.40
82 83 0.727398 CGGTCTTCGGGCTCAAAATC 59.273 55.000 0.00 0.00 34.75 2.17
83 84 2.854522 CGGTCTTCGGGCTCAAAAT 58.145 52.632 0.00 0.00 34.75 1.82
84 85 4.371975 CGGTCTTCGGGCTCAAAA 57.628 55.556 0.00 0.00 34.75 2.44
106 107 2.814913 AAAACGATGGGTCCGGGCTC 62.815 60.000 5.77 0.30 0.00 4.70
107 108 2.420466 AAAAACGATGGGTCCGGGCT 62.420 55.000 5.77 0.00 0.00 5.19
108 109 1.974875 AAAAACGATGGGTCCGGGC 60.975 57.895 0.00 0.00 0.00 6.13
109 110 1.880186 CAAAAACGATGGGTCCGGG 59.120 57.895 0.00 0.00 0.00 5.73
110 111 1.211709 GCAAAAACGATGGGTCCGG 59.788 57.895 0.00 0.00 0.00 5.14
111 112 0.525761 ATGCAAAAACGATGGGTCCG 59.474 50.000 0.00 0.00 0.00 4.79
112 113 2.741759 AATGCAAAAACGATGGGTCC 57.258 45.000 0.00 0.00 0.00 4.46
113 114 4.749598 AGAAAAATGCAAAAACGATGGGTC 59.250 37.500 0.00 0.00 0.00 4.46
114 115 4.511082 CAGAAAAATGCAAAAACGATGGGT 59.489 37.500 0.00 0.00 0.00 4.51
115 116 4.749099 TCAGAAAAATGCAAAAACGATGGG 59.251 37.500 0.00 0.00 0.00 4.00
116 117 5.903764 TCAGAAAAATGCAAAAACGATGG 57.096 34.783 0.00 0.00 0.00 3.51
117 118 6.018832 ACCTTCAGAAAAATGCAAAAACGATG 60.019 34.615 0.00 0.00 0.00 3.84
118 119 6.048509 ACCTTCAGAAAAATGCAAAAACGAT 58.951 32.000 0.00 0.00 0.00 3.73
119 120 5.415221 ACCTTCAGAAAAATGCAAAAACGA 58.585 33.333 0.00 0.00 0.00 3.85
120 121 5.554324 CGACCTTCAGAAAAATGCAAAAACG 60.554 40.000 0.00 0.00 0.00 3.60
121 122 5.276820 CCGACCTTCAGAAAAATGCAAAAAC 60.277 40.000 0.00 0.00 0.00 2.43
122 123 4.808364 CCGACCTTCAGAAAAATGCAAAAA 59.192 37.500 0.00 0.00 0.00 1.94
123 124 4.367450 CCGACCTTCAGAAAAATGCAAAA 58.633 39.130 0.00 0.00 0.00 2.44
124 125 3.243704 CCCGACCTTCAGAAAAATGCAAA 60.244 43.478 0.00 0.00 0.00 3.68
125 126 2.295909 CCCGACCTTCAGAAAAATGCAA 59.704 45.455 0.00 0.00 0.00 4.08
126 127 1.885887 CCCGACCTTCAGAAAAATGCA 59.114 47.619 0.00 0.00 0.00 3.96
127 128 1.402852 GCCCGACCTTCAGAAAAATGC 60.403 52.381 0.00 0.00 0.00 3.56
128 129 1.202348 GGCCCGACCTTCAGAAAAATG 59.798 52.381 0.00 0.00 34.51 2.32
129 130 1.545841 GGCCCGACCTTCAGAAAAAT 58.454 50.000 0.00 0.00 34.51 1.82
130 131 0.887387 CGGCCCGACCTTCAGAAAAA 60.887 55.000 0.00 0.00 35.61 1.94
131 132 1.302192 CGGCCCGACCTTCAGAAAA 60.302 57.895 0.00 0.00 35.61 2.29
132 133 2.345991 CGGCCCGACCTTCAGAAA 59.654 61.111 0.00 0.00 35.61 2.52
133 134 3.702048 CCGGCCCGACCTTCAGAA 61.702 66.667 3.71 0.00 35.61 3.02
134 135 4.689549 TCCGGCCCGACCTTCAGA 62.690 66.667 3.71 0.00 35.61 3.27
135 136 4.148825 CTCCGGCCCGACCTTCAG 62.149 72.222 3.71 0.00 35.61 3.02
154 155 0.664224 AACACGTAAAAGCCCGTTGG 59.336 50.000 0.00 0.00 34.59 3.77
155 156 1.658094 CGAACACGTAAAAGCCCGTTG 60.658 52.381 0.00 0.00 34.59 4.10
156 157 0.582960 CGAACACGTAAAAGCCCGTT 59.417 50.000 0.00 0.00 34.59 4.44
157 158 1.223417 CCGAACACGTAAAAGCCCGT 61.223 55.000 0.00 0.00 37.90 5.28
158 159 1.494189 CCGAACACGTAAAAGCCCG 59.506 57.895 0.00 0.00 0.00 6.13
159 160 1.871077 CCCGAACACGTAAAAGCCC 59.129 57.895 0.00 0.00 0.00 5.19
160 161 1.208358 GCCCGAACACGTAAAAGCC 59.792 57.895 0.00 0.00 0.00 4.35
161 162 1.208358 GGCCCGAACACGTAAAAGC 59.792 57.895 0.00 0.00 0.00 3.51
162 163 1.871077 GGGCCCGAACACGTAAAAG 59.129 57.895 5.69 0.00 0.00 2.27
163 164 1.960250 CGGGCCCGAACACGTAAAA 60.960 57.895 41.82 0.00 42.83 1.52
164 165 2.357275 CGGGCCCGAACACGTAAA 60.357 61.111 41.82 0.00 42.83 2.01
165 166 4.376176 CCGGGCCCGAACACGTAA 62.376 66.667 45.44 0.00 42.83 3.18
182 183 1.246737 CCTGTTTTCTGGGCCTGAGC 61.247 60.000 13.14 8.58 35.62 4.26
183 184 1.246737 GCCTGTTTTCTGGGCCTGAG 61.247 60.000 13.14 0.00 39.96 3.35
184 185 1.228552 GCCTGTTTTCTGGGCCTGA 60.229 57.895 9.30 9.30 39.96 3.86
185 186 3.369921 GCCTGTTTTCTGGGCCTG 58.630 61.111 4.53 4.06 39.96 4.85
189 190 1.000896 ATCGGGCCTGTTTTCTGGG 60.001 57.895 12.43 0.00 39.00 4.45
190 191 1.315257 CCATCGGGCCTGTTTTCTGG 61.315 60.000 12.43 8.29 41.11 3.86
191 192 2.183409 CCATCGGGCCTGTTTTCTG 58.817 57.895 12.43 2.96 0.00 3.02
192 193 4.743018 CCATCGGGCCTGTTTTCT 57.257 55.556 12.43 0.00 0.00 2.52
224 225 4.107029 AAAAACTTAGGCCCGGGC 57.893 55.556 38.57 38.57 41.06 6.13
238 239 2.725008 CCAAGCCCGACGCAAAAA 59.275 55.556 0.00 0.00 41.38 1.94
239 240 3.972276 GCCAAGCCCGACGCAAAA 61.972 61.111 0.00 0.00 41.38 2.44
240 241 3.538785 TAGCCAAGCCCGACGCAAA 62.539 57.895 0.00 0.00 41.38 3.68
241 242 3.950794 CTAGCCAAGCCCGACGCAA 62.951 63.158 0.00 0.00 41.38 4.85
242 243 4.451150 CTAGCCAAGCCCGACGCA 62.451 66.667 0.00 0.00 41.38 5.24
285 286 1.668101 AACCAAGCCCGACGCAAAAA 61.668 50.000 0.00 0.00 41.38 1.94
286 287 0.818445 TAACCAAGCCCGACGCAAAA 60.818 50.000 0.00 0.00 41.38 2.44
287 288 1.227883 TAACCAAGCCCGACGCAAA 60.228 52.632 0.00 0.00 41.38 3.68
288 289 1.669760 CTAACCAAGCCCGACGCAA 60.670 57.895 0.00 0.00 41.38 4.85
289 290 2.047655 CTAACCAAGCCCGACGCA 60.048 61.111 0.00 0.00 41.38 5.24
290 291 2.818274 CCTAACCAAGCCCGACGC 60.818 66.667 0.00 0.00 37.98 5.19
291 292 2.818274 GCCTAACCAAGCCCGACG 60.818 66.667 0.00 0.00 0.00 5.12
292 293 2.437895 GGCCTAACCAAGCCCGAC 60.438 66.667 0.00 0.00 43.76 4.79
297 298 4.733542 TGCCGGGCCTAACCAAGC 62.734 66.667 17.97 0.00 42.05 4.01
298 299 2.120909 CATGCCGGGCCTAACCAAG 61.121 63.158 17.97 0.00 42.05 3.61
299 300 2.044451 CATGCCGGGCCTAACCAA 60.044 61.111 17.97 0.00 42.05 3.67
300 301 3.012119 TCATGCCGGGCCTAACCA 61.012 61.111 17.97 0.00 42.05 3.67
301 302 2.203209 CTCATGCCGGGCCTAACC 60.203 66.667 17.97 0.00 37.93 2.85
302 303 2.203209 CCTCATGCCGGGCCTAAC 60.203 66.667 17.97 0.00 0.00 2.34
303 304 1.858739 AAACCTCATGCCGGGCCTAA 61.859 55.000 17.97 0.00 0.00 2.69
304 305 2.305607 AAACCTCATGCCGGGCCTA 61.306 57.895 17.97 0.00 0.00 3.93
305 306 3.661648 AAACCTCATGCCGGGCCT 61.662 61.111 17.97 3.08 0.00 5.19
306 307 3.451894 CAAACCTCATGCCGGGCC 61.452 66.667 17.97 0.00 0.00 5.80
307 308 3.451894 CCAAACCTCATGCCGGGC 61.452 66.667 13.32 13.32 0.00 6.13
308 309 3.451894 GCCAAACCTCATGCCGGG 61.452 66.667 2.18 0.00 0.00 5.73
309 310 3.451894 GGCCAAACCTCATGCCGG 61.452 66.667 0.00 0.00 33.59 6.13
311 312 1.259840 ACATGGCCAAACCTCATGCC 61.260 55.000 10.96 0.00 41.20 4.40
312 313 1.473258 TACATGGCCAAACCTCATGC 58.527 50.000 10.96 0.00 41.20 4.06
313 314 3.254166 GCTATACATGGCCAAACCTCATG 59.746 47.826 10.96 3.60 42.65 3.07
314 315 3.139025 AGCTATACATGGCCAAACCTCAT 59.861 43.478 10.96 0.00 40.22 2.90
315 316 2.509548 AGCTATACATGGCCAAACCTCA 59.490 45.455 10.96 0.00 40.22 3.86
316 317 2.880890 CAGCTATACATGGCCAAACCTC 59.119 50.000 10.96 0.00 40.22 3.85
317 318 2.936202 CAGCTATACATGGCCAAACCT 58.064 47.619 10.96 0.00 40.22 3.50
318 319 1.338020 GCAGCTATACATGGCCAAACC 59.662 52.381 10.96 0.00 34.49 3.27
319 320 2.033801 CAGCAGCTATACATGGCCAAAC 59.966 50.000 10.96 0.00 34.49 2.93
320 321 2.300433 CAGCAGCTATACATGGCCAAA 58.700 47.619 10.96 0.00 34.49 3.28
321 322 1.212688 ACAGCAGCTATACATGGCCAA 59.787 47.619 10.96 0.00 34.49 4.52
322 323 0.839277 ACAGCAGCTATACATGGCCA 59.161 50.000 8.56 8.56 34.49 5.36
323 324 2.839486 TACAGCAGCTATACATGGCC 57.161 50.000 0.00 0.00 34.49 5.36
324 325 2.417933 GCATACAGCAGCTATACATGGC 59.582 50.000 0.00 0.00 44.79 4.40
337 338 1.218230 GGAGCGCTACAGCATACAGC 61.218 60.000 16.75 0.00 46.19 4.40
338 339 0.598680 GGGAGCGCTACAGCATACAG 60.599 60.000 23.75 0.00 42.21 2.74
339 340 1.441729 GGGAGCGCTACAGCATACA 59.558 57.895 23.75 0.00 42.21 2.29
340 341 1.301009 GGGGAGCGCTACAGCATAC 60.301 63.158 23.75 1.77 42.21 2.39
341 342 2.507854 GGGGGAGCGCTACAGCATA 61.508 63.158 23.75 0.00 42.21 3.14
342 343 3.866582 GGGGGAGCGCTACAGCAT 61.867 66.667 23.75 0.00 42.21 3.79
344 345 2.893682 ATTTGGGGGAGCGCTACAGC 62.894 60.000 23.75 4.36 37.78 4.40
345 346 0.815615 GATTTGGGGGAGCGCTACAG 60.816 60.000 23.75 0.00 0.00 2.74
346 347 1.223487 GATTTGGGGGAGCGCTACA 59.777 57.895 23.75 10.72 0.00 2.74
347 348 0.533085 GAGATTTGGGGGAGCGCTAC 60.533 60.000 12.53 12.53 0.00 3.58
348 349 0.980754 TGAGATTTGGGGGAGCGCTA 60.981 55.000 11.50 0.00 0.00 4.26
349 350 1.639635 ATGAGATTTGGGGGAGCGCT 61.640 55.000 11.27 11.27 0.00 5.92
350 351 0.753111 AATGAGATTTGGGGGAGCGC 60.753 55.000 0.00 0.00 0.00 5.92
351 352 1.133976 AGAATGAGATTTGGGGGAGCG 60.134 52.381 0.00 0.00 0.00 5.03
352 353 2.092212 TGAGAATGAGATTTGGGGGAGC 60.092 50.000 0.00 0.00 0.00 4.70
353 354 3.939740 TGAGAATGAGATTTGGGGGAG 57.060 47.619 0.00 0.00 0.00 4.30
354 355 3.139025 GGATGAGAATGAGATTTGGGGGA 59.861 47.826 0.00 0.00 0.00 4.81
355 356 3.139770 AGGATGAGAATGAGATTTGGGGG 59.860 47.826 0.00 0.00 0.00 5.40
356 357 4.450305 AGGATGAGAATGAGATTTGGGG 57.550 45.455 0.00 0.00 0.00 4.96
357 358 6.185114 ACTAGGATGAGAATGAGATTTGGG 57.815 41.667 0.00 0.00 0.00 4.12
358 359 9.270640 CTAAACTAGGATGAGAATGAGATTTGG 57.729 37.037 0.00 0.00 0.00 3.28
392 393 6.382282 GGAGGATGGGATGAGATTTTCTTTTT 59.618 38.462 0.00 0.00 0.00 1.94
393 394 5.896106 GGAGGATGGGATGAGATTTTCTTTT 59.104 40.000 0.00 0.00 0.00 2.27
394 395 5.043881 TGGAGGATGGGATGAGATTTTCTTT 60.044 40.000 0.00 0.00 0.00 2.52
395 396 4.479796 TGGAGGATGGGATGAGATTTTCTT 59.520 41.667 0.00 0.00 0.00 2.52
396 397 4.050037 TGGAGGATGGGATGAGATTTTCT 58.950 43.478 0.00 0.00 0.00 2.52
397 398 4.140536 GTGGAGGATGGGATGAGATTTTC 58.859 47.826 0.00 0.00 0.00 2.29
398 399 3.790408 AGTGGAGGATGGGATGAGATTTT 59.210 43.478 0.00 0.00 0.00 1.82
411 412 1.143813 CATTAGGGCCAGTGGAGGAT 58.856 55.000 15.20 0.00 0.00 3.24
435 436 1.573108 GAGTTCATCTGGGACTGGGA 58.427 55.000 0.00 0.00 0.00 4.37
436 437 0.543749 GGAGTTCATCTGGGACTGGG 59.456 60.000 0.00 0.00 0.00 4.45
438 439 1.209019 CCAGGAGTTCATCTGGGACTG 59.791 57.143 0.00 0.00 44.99 3.51
439 440 1.577736 CCAGGAGTTCATCTGGGACT 58.422 55.000 0.00 0.00 44.99 3.85
466 467 4.097361 GTGGGGAGGCGGAGGAAC 62.097 72.222 0.00 0.00 0.00 3.62
550 551 2.421739 CGGAATCGGCGGAGGAAT 59.578 61.111 7.21 0.00 0.00 3.01
601 602 1.684734 GGGGTAGAGTCTGCCGGAA 60.685 63.158 19.66 0.00 37.11 4.30
603 604 3.528370 CGGGGTAGAGTCTGCCGG 61.528 72.222 19.66 11.16 37.11 6.13
608 609 2.042843 CTGGGCGGGGTAGAGTCT 60.043 66.667 0.00 0.00 0.00 3.24
691 692 3.798511 GGGGAGGAAGGGCCGAAG 61.799 72.222 0.00 0.00 43.43 3.79
793 806 3.058085 TCGTAGTCGTACATGCTGTTGAA 60.058 43.478 0.00 0.00 38.33 2.69
794 807 2.485038 TCGTAGTCGTACATGCTGTTGA 59.515 45.455 0.00 0.00 38.33 3.18
828 841 0.736325 AGACGGCGAATTCCTTGACG 60.736 55.000 16.62 5.64 0.00 4.35
973 986 2.029020 TGAAGTCTCTGAATGACGGGTG 60.029 50.000 0.00 0.00 39.24 4.61
1047 1060 2.892425 CATCTTCCGGCGCAGGAC 60.892 66.667 29.49 0.00 40.56 3.85
1107 1120 4.977126 GCGTAGTAGCGGCGCGAT 62.977 66.667 27.59 18.33 41.70 4.58
1153 1172 2.623416 ACATCTCGGCGTCATCTTCATA 59.377 45.455 6.85 0.00 0.00 2.15
1154 1173 1.410517 ACATCTCGGCGTCATCTTCAT 59.589 47.619 6.85 0.00 0.00 2.57
1155 1174 0.817654 ACATCTCGGCGTCATCTTCA 59.182 50.000 6.85 0.00 0.00 3.02
1156 1175 1.590238 CAACATCTCGGCGTCATCTTC 59.410 52.381 6.85 0.00 0.00 2.87
1157 1176 1.645034 CAACATCTCGGCGTCATCTT 58.355 50.000 6.85 0.00 0.00 2.40
1158 1177 0.807667 GCAACATCTCGGCGTCATCT 60.808 55.000 6.85 0.00 0.00 2.90
1159 1178 0.807667 AGCAACATCTCGGCGTCATC 60.808 55.000 6.85 0.00 0.00 2.92
1170 1189 4.169102 TCGAGCACGAGCAACATC 57.831 55.556 7.77 0.00 43.81 3.06
1259 1299 0.906756 TCCTTCTCCTGCCTCCACAG 60.907 60.000 0.00 0.00 37.42 3.66
1304 1347 2.411031 CGATGTGCACCACGTTTACTTC 60.411 50.000 15.69 0.00 37.14 3.01
1307 1350 0.863144 ACGATGTGCACCACGTTTAC 59.137 50.000 25.00 5.09 37.14 2.01
1321 1370 2.209838 ACGGCATACAAGAGACGATG 57.790 50.000 0.00 0.00 0.00 3.84
1325 1374 3.486108 CGAATGTACGGCATACAAGAGAC 59.514 47.826 0.00 0.00 46.90 3.36
1344 1393 1.134521 CCATTCCCATCCTTCGACGAA 60.135 52.381 10.34 10.34 0.00 3.85
1346 1395 1.160329 GCCATTCCCATCCTTCGACG 61.160 60.000 0.00 0.00 0.00 5.12
1350 1399 1.037030 TTGCGCCATTCCCATCCTTC 61.037 55.000 4.18 0.00 0.00 3.46
1421 1470 1.406539 CTACACCCCTGATGCAAATGC 59.593 52.381 0.00 0.00 42.50 3.56
1422 1471 1.406539 GCTACACCCCTGATGCAAATG 59.593 52.381 0.00 0.00 0.00 2.32
1423 1472 1.285962 AGCTACACCCCTGATGCAAAT 59.714 47.619 0.00 0.00 0.00 2.32
1424 1473 0.698238 AGCTACACCCCTGATGCAAA 59.302 50.000 0.00 0.00 0.00 3.68
1433 1482 0.468648 GTATCCACCAGCTACACCCC 59.531 60.000 0.00 0.00 0.00 4.95
1468 1517 1.659794 CCCTGTTGTTTTCTGGGCG 59.340 57.895 0.00 0.00 37.28 6.13
1470 1519 1.118838 TTGCCCTGTTGTTTTCTGGG 58.881 50.000 0.00 0.00 43.80 4.45
1477 1526 4.910458 AGTCTACTATTGCCCTGTTGTT 57.090 40.909 0.00 0.00 0.00 2.83
1486 1535 8.718102 TCCAGTGAAAAATAGTCTACTATTGC 57.282 34.615 14.48 8.96 45.55 3.56
1524 1573 0.952984 GACAGAACCACTCAGCCTGC 60.953 60.000 0.00 0.00 0.00 4.85
1529 1578 2.288702 CCAGTCTGACAGAACCACTCAG 60.289 54.545 6.76 0.00 0.00 3.35
1573 1623 1.069090 GCGGGAGATCGGCATACAA 59.931 57.895 0.00 0.00 40.82 2.41
1590 1640 1.873698 TACCAGTTCAAAGTGTCGGC 58.126 50.000 0.00 0.00 0.00 5.54
1620 1685 5.948992 ACAGAACAAGCAGTTAAAGATCC 57.051 39.130 0.00 0.00 41.51 3.36
1630 1695 3.503363 TCCTATGCAAACAGAACAAGCAG 59.497 43.478 0.00 0.00 38.75 4.24
1632 1697 3.253188 TGTCCTATGCAAACAGAACAAGC 59.747 43.478 0.00 0.00 0.00 4.01
1636 1701 4.168760 GCAATGTCCTATGCAAACAGAAC 58.831 43.478 0.00 0.00 42.12 3.01
1666 1733 2.326222 TGGTGCACGCTACCAAAAG 58.674 52.632 11.45 0.00 44.79 2.27
1673 1755 0.899019 TAGAATGGTGGTGCACGCTA 59.101 50.000 11.45 4.60 34.83 4.26
1676 1759 1.808411 AAGTAGAATGGTGGTGCACG 58.192 50.000 11.45 0.00 34.83 5.34
1682 1765 4.218417 CCCTTTGTCAAAGTAGAATGGTGG 59.782 45.833 21.12 9.91 36.77 4.61
1683 1766 4.827284 ACCCTTTGTCAAAGTAGAATGGTG 59.173 41.667 21.12 5.32 36.77 4.17
1685 1768 5.770162 AGAACCCTTTGTCAAAGTAGAATGG 59.230 40.000 21.12 16.26 36.77 3.16
1703 1787 2.704572 CCACATCAGAGTTCAGAACCC 58.295 52.381 9.85 0.00 0.00 4.11
1707 1791 1.351076 TGGCCACATCAGAGTTCAGA 58.649 50.000 0.00 0.00 0.00 3.27
1715 1799 6.589907 GGTTTAAAGTAATTTGGCCACATCAG 59.410 38.462 3.88 0.00 0.00 2.90
1716 1800 6.459923 GGTTTAAAGTAATTTGGCCACATCA 58.540 36.000 3.88 0.00 0.00 3.07
1717 1801 5.872617 GGGTTTAAAGTAATTTGGCCACATC 59.127 40.000 3.88 0.00 0.00 3.06
1718 1802 5.567823 CGGGTTTAAAGTAATTTGGCCACAT 60.568 40.000 3.88 0.00 0.00 3.21
1719 1803 4.262079 CGGGTTTAAAGTAATTTGGCCACA 60.262 41.667 3.88 0.00 0.00 4.17
1720 1804 4.239304 CGGGTTTAAAGTAATTTGGCCAC 58.761 43.478 3.88 0.00 0.00 5.01
1721 1805 3.896272 ACGGGTTTAAAGTAATTTGGCCA 59.104 39.130 0.00 0.00 0.00 5.36
1723 1807 9.806203 ATTATAACGGGTTTAAAGTAATTTGGC 57.194 29.630 0.00 0.00 0.00 4.52
1728 1823 9.398538 TGAGCATTATAACGGGTTTAAAGTAAT 57.601 29.630 0.00 0.00 0.00 1.89
1736 1831 6.294508 GGCAATATGAGCATTATAACGGGTTT 60.295 38.462 3.20 0.00 0.00 3.27
1750 1845 4.092116 AGGGAAAGTAGGCAATATGAGC 57.908 45.455 0.00 0.00 0.00 4.26
1760 2074 5.167303 AGCTTAACTGAAGGGAAAGTAGG 57.833 43.478 0.00 0.00 35.49 3.18
1777 2091 7.615365 AGGAAAATACATGTCAAATCCAGCTTA 59.385 33.333 17.76 0.00 0.00 3.09
1778 2092 6.438425 AGGAAAATACATGTCAAATCCAGCTT 59.562 34.615 17.76 1.02 0.00 3.74
1779 2093 5.954150 AGGAAAATACATGTCAAATCCAGCT 59.046 36.000 17.76 0.00 0.00 4.24
1780 2094 6.127647 TGAGGAAAATACATGTCAAATCCAGC 60.128 38.462 17.76 11.87 0.00 4.85
1781 2095 7.395190 TGAGGAAAATACATGTCAAATCCAG 57.605 36.000 17.76 0.00 0.00 3.86
1783 2097 9.657419 AAAATGAGGAAAATACATGTCAAATCC 57.343 29.630 0.00 7.09 0.00 3.01
1810 2124 9.201989 ACCAGACATGATAACTTAGTGAAGATA 57.798 33.333 0.00 0.00 36.45 1.98
1814 2460 5.874810 GCACCAGACATGATAACTTAGTGAA 59.125 40.000 0.00 0.00 0.00 3.18
1819 2465 4.835284 TGGCACCAGACATGATAACTTA 57.165 40.909 0.00 0.00 0.00 2.24
1855 2501 6.356556 TGTGGCATAATTTAGCAGACATAGT 58.643 36.000 0.00 0.00 0.00 2.12
1885 4608 6.471841 CGAATATGATGATGGCGAAACAAAAA 59.528 34.615 0.00 0.00 0.00 1.94
1886 4609 5.970612 CGAATATGATGATGGCGAAACAAAA 59.029 36.000 0.00 0.00 0.00 2.44
1887 4610 5.065859 ACGAATATGATGATGGCGAAACAAA 59.934 36.000 0.00 0.00 0.00 2.83
1957 4701 2.425592 CCACGTGGGAAGACAGCA 59.574 61.111 27.57 0.00 40.01 4.41
2039 4784 7.041098 GCTAGACATATGTTTGGGAATCGAATT 60.041 37.037 10.30 0.00 0.00 2.17
2078 4823 6.946340 TCCATAACAGTTGTCATGTACTCAT 58.054 36.000 0.00 0.00 34.21 2.90
2079 4824 6.353404 TCCATAACAGTTGTCATGTACTCA 57.647 37.500 0.00 0.00 0.00 3.41
2080 4825 7.677276 GCATTCCATAACAGTTGTCATGTACTC 60.677 40.741 0.00 0.00 0.00 2.59
2081 4826 6.094048 GCATTCCATAACAGTTGTCATGTACT 59.906 38.462 0.00 0.00 0.00 2.73
2082 4827 6.128035 TGCATTCCATAACAGTTGTCATGTAC 60.128 38.462 0.00 0.00 0.00 2.90
2083 4828 5.942826 TGCATTCCATAACAGTTGTCATGTA 59.057 36.000 0.00 0.00 0.00 2.29
2084 4829 4.766373 TGCATTCCATAACAGTTGTCATGT 59.234 37.500 0.00 0.00 0.00 3.21
2085 4830 5.106038 ACTGCATTCCATAACAGTTGTCATG 60.106 40.000 0.00 0.00 40.35 3.07
2086 4831 5.012239 ACTGCATTCCATAACAGTTGTCAT 58.988 37.500 0.00 0.00 40.35 3.06
2090 4835 3.758023 TGGACTGCATTCCATAACAGTTG 59.242 43.478 21.03 0.00 43.16 3.16
2155 4900 7.787028 AGTGCCTTTGGTCTTGTTTTAATTTA 58.213 30.769 0.00 0.00 0.00 1.40
2158 4903 5.869649 AGTGCCTTTGGTCTTGTTTTAAT 57.130 34.783 0.00 0.00 0.00 1.40
2185 5108 4.704057 CCTCTTCCAAAGGAAAATCAGAGG 59.296 45.833 13.50 13.50 41.54 3.69
2208 5131 2.265904 GCGTTCCAACCCCACTTCC 61.266 63.158 0.00 0.00 0.00 3.46
2235 5158 5.637006 TTTAGTGAAATTGGGGAATCACG 57.363 39.130 0.00 0.00 45.21 4.35
2236 5159 8.720562 CAAATTTTAGTGAAATTGGGGAATCAC 58.279 33.333 6.39 0.00 44.98 3.06
2245 5168 6.875753 TGAAGCGCAAATTTTAGTGAAATTG 58.124 32.000 11.47 3.26 44.98 2.32
2264 5187 1.499502 GAGAACCAAGCGCTGAAGC 59.500 57.895 12.58 0.00 37.78 3.86
2266 5189 0.603707 CAGGAGAACCAAGCGCTGAA 60.604 55.000 12.58 0.00 38.94 3.02
2282 5205 6.078202 AGTATCACGTCATATTGAGACAGG 57.922 41.667 3.47 0.00 36.59 4.00
2283 5206 6.419116 CCAAGTATCACGTCATATTGAGACAG 59.581 42.308 3.47 0.00 36.59 3.51
2313 5236 2.851263 TAAACGGGCACTGAGAATGT 57.149 45.000 0.00 0.00 38.67 2.71
2315 5238 3.350219 ACATAAACGGGCACTGAGAAT 57.650 42.857 0.00 0.00 38.67 2.40
2332 5255 5.251764 GCAAGATAGGAGCCATCATTACAT 58.748 41.667 0.00 0.00 0.00 2.29
2389 5312 9.420551 GTTATAAGCTACTGCCTATCGTTATTT 57.579 33.333 0.00 0.00 40.80 1.40
2395 5318 5.044428 ACGTTATAAGCTACTGCCTATCG 57.956 43.478 0.00 0.00 40.80 2.92
2402 5325 6.894828 ACAACCAAAACGTTATAAGCTACTG 58.105 36.000 0.00 0.00 0.00 2.74
2548 5471 6.337356 CGGAAAAATTACTGGGCATAAACAT 58.663 36.000 0.00 0.00 0.00 2.71
2566 5489 0.941542 CGCAGTTCAAGACCGGAAAA 59.058 50.000 9.46 0.00 0.00 2.29
2571 5494 4.600012 AATTAATCGCAGTTCAAGACCG 57.400 40.909 0.00 0.00 0.00 4.79
2573 5496 7.464358 ACATGTAATTAATCGCAGTTCAAGAC 58.536 34.615 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.