Multiple sequence alignment - TraesCS4A01G423100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G423100 chr4A 100.000 2995 0 0 1 2995 693357494 693354500 0.000000e+00 5531.0
1 TraesCS4A01G423100 chr4A 94.595 185 10 0 2762 2946 693354684 693354500 1.550000e-73 287.0
2 TraesCS4A01G423100 chr4A 94.595 185 10 0 2811 2995 693354733 693354549 1.550000e-73 287.0
3 TraesCS4A01G423100 chr4A 89.720 214 14 5 1403 1609 693356029 693355817 2.020000e-67 267.0
4 TraesCS4A01G423100 chr4A 100.000 51 0 0 3359 3409 693354136 693354086 1.010000e-15 95.3
5 TraesCS4A01G423100 chr4A 98.039 51 1 0 3359 3409 693354609 693354559 4.690000e-14 89.8
6 TraesCS4A01G423100 chr4A 98.039 51 1 0 3359 3409 693354658 693354608 4.690000e-14 89.8
7 TraesCS4A01G423100 chr4A 94.118 51 3 0 3359 3409 693354707 693354657 1.010000e-10 78.7
8 TraesCS4A01G423100 chr7D 93.428 2115 77 15 626 2703 154001435 154003524 0.000000e+00 3079.0
9 TraesCS4A01G423100 chr7D 87.589 1257 84 38 628 1867 574241588 574240387 0.000000e+00 1391.0
10 TraesCS4A01G423100 chr7D 86.738 1214 109 24 1827 2990 508796116 508797327 0.000000e+00 1303.0
11 TraesCS4A01G423100 chr7D 93.088 897 42 1 1827 2703 135864021 135864917 0.000000e+00 1295.0
12 TraesCS4A01G423100 chr7D 87.177 1084 98 21 1927 2970 41465923 41464841 0.000000e+00 1194.0
13 TraesCS4A01G423100 chr7D 89.556 450 42 4 182 629 182599418 182599864 1.780000e-157 566.0
14 TraesCS4A01G423100 chr7D 89.087 449 44 5 185 629 630612483 630612930 1.380000e-153 553.0
15 TraesCS4A01G423100 chr7D 89.347 291 29 2 2702 2990 154003615 154003905 6.950000e-97 364.0
16 TraesCS4A01G423100 chr7D 90.164 183 18 0 2811 2993 154003677 154003859 4.400000e-59 239.0
17 TraesCS4A01G423100 chr3D 92.864 2102 85 25 632 2703 468666174 468664108 0.000000e+00 2990.0
18 TraesCS4A01G423100 chr3D 94.081 1909 68 20 628 2528 16121893 16120022 0.000000e+00 2857.0
19 TraesCS4A01G423100 chr3D 87.108 2102 141 62 629 2691 356978263 356976253 0.000000e+00 2261.0
20 TraesCS4A01G423100 chr3D 94.711 1021 26 6 1703 2703 578322983 578321971 0.000000e+00 1561.0
21 TraesCS4A01G423100 chr3D 86.328 1258 84 44 628 1867 182084693 182085880 0.000000e+00 1290.0
22 TraesCS4A01G423100 chr3D 92.259 478 27 3 1150 1627 578353346 578352879 0.000000e+00 669.0
23 TraesCS4A01G423100 chr3D 88.764 445 44 3 185 629 590665734 590665296 1.080000e-149 540.0
24 TraesCS4A01G423100 chr3D 90.244 287 20 6 2705 2990 468663978 468663699 5.370000e-98 368.0
25 TraesCS4A01G423100 chr3D 88.316 291 24 8 2702 2990 578321866 578321584 1.170000e-89 340.0
26 TraesCS4A01G423100 chr3D 88.785 214 24 0 2762 2975 468663878 468663665 2.610000e-66 263.0
27 TraesCS4A01G423100 chr3D 87.892 223 26 1 2766 2988 578321758 578321537 9.380000e-66 261.0
28 TraesCS4A01G423100 chr3D 92.357 157 12 0 2834 2990 468663904 468663748 1.230000e-54 224.0
29 TraesCS4A01G423100 chr3D 94.118 51 3 0 3359 3409 468663803 468663753 1.010000e-10 78.7
30 TraesCS4A01G423100 chr3D 94.118 51 3 0 3359 3409 468663901 468663851 1.010000e-10 78.7
31 TraesCS4A01G423100 chr3D 94.118 51 3 0 3359 3409 578321687 578321637 1.010000e-10 78.7
32 TraesCS4A01G423100 chr1D 87.280 2099 132 53 629 2691 346200511 346198512 0.000000e+00 2272.0
33 TraesCS4A01G423100 chr1D 87.684 1153 99 22 1827 2939 481960561 481959412 0.000000e+00 1303.0
34 TraesCS4A01G423100 chr1D 88.767 454 43 7 180 629 334053177 334053626 1.790000e-152 549.0
35 TraesCS4A01G423100 chr5D 94.561 956 32 1 1768 2703 284885981 284886936 0.000000e+00 1459.0
36 TraesCS4A01G423100 chr5D 93.886 965 39 1 1759 2703 489756318 489757282 0.000000e+00 1437.0
37 TraesCS4A01G423100 chr5D 93.534 897 38 1 1827 2703 525156593 525157489 0.000000e+00 1317.0
38 TraesCS4A01G423100 chr5D 93.311 897 40 1 1827 2703 474543579 474544475 0.000000e+00 1306.0
39 TraesCS4A01G423100 chr5D 86.226 1256 87 41 629 1867 78754566 78755752 0.000000e+00 1282.0
40 TraesCS4A01G423100 chr5D 89.680 281 18 3 1499 1769 284885658 284885937 7.000000e-92 348.0
41 TraesCS4A01G423100 chr6B 90.508 1064 78 5 629 1679 149424094 149425147 0.000000e+00 1384.0
42 TraesCS4A01G423100 chr6B 89.609 972 68 14 1762 2703 609120360 609121328 0.000000e+00 1205.0
43 TraesCS4A01G423100 chr6B 78.618 304 39 17 2702 2990 149426196 149426488 9.720000e-41 178.0
44 TraesCS4A01G423100 chr6D 92.418 976 43 12 1757 2703 100211335 100210362 0.000000e+00 1363.0
45 TraesCS4A01G423100 chr6D 88.911 1001 74 13 629 1609 100212464 100211481 0.000000e+00 1199.0
46 TraesCS4A01G423100 chr6D 91.480 446 37 1 185 629 345291444 345291889 2.250000e-171 612.0
47 TraesCS4A01G423100 chr6D 89.462 446 44 2 185 629 417885566 417885123 8.260000e-156 560.0
48 TraesCS4A01G423100 chr6D 88.692 451 43 7 182 629 90927628 90927183 8.320000e-151 544.0
49 TraesCS4A01G423100 chr6D 88.565 446 49 2 185 629 300325991 300325547 1.080000e-149 540.0
50 TraesCS4A01G423100 chr6D 92.284 324 15 2 1471 1785 100211688 100211366 5.190000e-123 451.0
51 TraesCS4A01G423100 chr2B 89.204 1093 80 18 629 1693 54453880 54452798 0.000000e+00 1330.0
52 TraesCS4A01G423100 chr2B 92.823 209 15 0 1471 1679 54453091 54452883 1.540000e-78 303.0
53 TraesCS4A01G423100 chr2B 80.531 226 25 15 2702 2911 54451806 54451584 4.550000e-34 156.0
54 TraesCS4A01G423100 chr3B 86.851 1232 70 26 1526 2703 392293187 392291994 0.000000e+00 1293.0
55 TraesCS4A01G423100 chr3B 76.190 273 43 15 2702 2957 53028270 53028537 1.280000e-24 124.0
56 TraesCS4A01G423100 chr3B 86.813 91 10 2 2702 2790 52629660 52629570 2.160000e-17 100.0
57 TraesCS4A01G423100 chr5B 85.568 1074 79 28 629 1673 696513344 696512318 0.000000e+00 1055.0
58 TraesCS4A01G423100 chr5B 94.222 225 11 2 1403 1626 696512518 696512295 3.260000e-90 342.0
59 TraesCS4A01G423100 chr5B 80.451 266 48 4 2702 2966 696511216 696510954 2.070000e-47 200.0
60 TraesCS4A01G423100 chr1B 85.849 954 77 33 629 1564 61450805 61449892 0.000000e+00 961.0
61 TraesCS4A01G423100 chr1B 86.813 91 10 2 2702 2790 673445248 673445158 2.160000e-17 100.0
62 TraesCS4A01G423100 chr5A 88.105 723 72 11 628 1342 9494744 9494028 0.000000e+00 846.0
63 TraesCS4A01G423100 chr6A 88.033 727 68 16 627 1342 369654868 369655586 0.000000e+00 843.0
64 TraesCS4A01G423100 chr4B 85.027 748 84 17 629 1365 667481564 667482294 0.000000e+00 736.0
65 TraesCS4A01G423100 chr7A 83.188 690 89 17 706 1381 396053738 396053062 1.050000e-169 606.0
66 TraesCS4A01G423100 chr3A 89.087 449 46 2 182 629 60455503 60455949 3.840000e-154 555.0
67 TraesCS4A01G423100 chr3A 89.324 281 19 3 1499 1769 670758824 670758545 3.260000e-90 342.0
68 TraesCS4A01G423100 chr2A 93.956 182 3 1 4 185 4751868 4751695 5.610000e-68 268.0
69 TraesCS4A01G423100 chrUn 75.824 273 44 15 2702 2957 211279397 211279664 5.980000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G423100 chr4A 693354086 693357494 3408 True 840.700000 5531 96.138250 1 3409 8 chr4A.!!$R1 3408
1 TraesCS4A01G423100 chr7D 574240387 574241588 1201 True 1391.000000 1391 87.589000 628 1867 1 chr7D.!!$R2 1239
2 TraesCS4A01G423100 chr7D 508796116 508797327 1211 False 1303.000000 1303 86.738000 1827 2990 1 chr7D.!!$F3 1163
3 TraesCS4A01G423100 chr7D 135864021 135864917 896 False 1295.000000 1295 93.088000 1827 2703 1 chr7D.!!$F1 876
4 TraesCS4A01G423100 chr7D 154001435 154003905 2470 False 1227.333333 3079 90.979667 626 2993 3 chr7D.!!$F5 2367
5 TraesCS4A01G423100 chr7D 41464841 41465923 1082 True 1194.000000 1194 87.177000 1927 2970 1 chr7D.!!$R1 1043
6 TraesCS4A01G423100 chr3D 16120022 16121893 1871 True 2857.000000 2857 94.081000 628 2528 1 chr3D.!!$R1 1900
7 TraesCS4A01G423100 chr3D 356976253 356978263 2010 True 2261.000000 2261 87.108000 629 2691 1 chr3D.!!$R2 2062
8 TraesCS4A01G423100 chr3D 182084693 182085880 1187 False 1290.000000 1290 86.328000 628 1867 1 chr3D.!!$F1 1239
9 TraesCS4A01G423100 chr3D 468663665 468666174 2509 True 667.066667 2990 92.081000 632 3409 6 chr3D.!!$R5 2777
10 TraesCS4A01G423100 chr3D 578321537 578322983 1446 True 560.175000 1561 91.259250 1703 3409 4 chr3D.!!$R6 1706
11 TraesCS4A01G423100 chr1D 346198512 346200511 1999 True 2272.000000 2272 87.280000 629 2691 1 chr1D.!!$R1 2062
12 TraesCS4A01G423100 chr1D 481959412 481960561 1149 True 1303.000000 1303 87.684000 1827 2939 1 chr1D.!!$R2 1112
13 TraesCS4A01G423100 chr5D 489756318 489757282 964 False 1437.000000 1437 93.886000 1759 2703 1 chr5D.!!$F3 944
14 TraesCS4A01G423100 chr5D 525156593 525157489 896 False 1317.000000 1317 93.534000 1827 2703 1 chr5D.!!$F4 876
15 TraesCS4A01G423100 chr5D 474543579 474544475 896 False 1306.000000 1306 93.311000 1827 2703 1 chr5D.!!$F2 876
16 TraesCS4A01G423100 chr5D 78754566 78755752 1186 False 1282.000000 1282 86.226000 629 1867 1 chr5D.!!$F1 1238
17 TraesCS4A01G423100 chr5D 284885658 284886936 1278 False 903.500000 1459 92.120500 1499 2703 2 chr5D.!!$F5 1204
18 TraesCS4A01G423100 chr6B 609120360 609121328 968 False 1205.000000 1205 89.609000 1762 2703 1 chr6B.!!$F1 941
19 TraesCS4A01G423100 chr6B 149424094 149426488 2394 False 781.000000 1384 84.563000 629 2990 2 chr6B.!!$F2 2361
20 TraesCS4A01G423100 chr6D 100210362 100212464 2102 True 1004.333333 1363 91.204333 629 2703 3 chr6D.!!$R4 2074
21 TraesCS4A01G423100 chr2B 54451584 54453880 2296 True 596.333333 1330 87.519333 629 2911 3 chr2B.!!$R1 2282
22 TraesCS4A01G423100 chr3B 392291994 392293187 1193 True 1293.000000 1293 86.851000 1526 2703 1 chr3B.!!$R2 1177
23 TraesCS4A01G423100 chr5B 696510954 696513344 2390 True 532.333333 1055 86.747000 629 2966 3 chr5B.!!$R1 2337
24 TraesCS4A01G423100 chr1B 61449892 61450805 913 True 961.000000 961 85.849000 629 1564 1 chr1B.!!$R1 935
25 TraesCS4A01G423100 chr5A 9494028 9494744 716 True 846.000000 846 88.105000 628 1342 1 chr5A.!!$R1 714
26 TraesCS4A01G423100 chr6A 369654868 369655586 718 False 843.000000 843 88.033000 627 1342 1 chr6A.!!$F1 715
27 TraesCS4A01G423100 chr4B 667481564 667482294 730 False 736.000000 736 85.027000 629 1365 1 chr4B.!!$F1 736
28 TraesCS4A01G423100 chr7A 396053062 396053738 676 True 606.000000 606 83.188000 706 1381 1 chr7A.!!$R1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 554 0.036732 TGCTCTTTGTCGGCCATTCT 59.963 50.0 2.24 0.0 0.00 2.40 F
568 569 0.044855 ATTCTAGGCCCACCACTCCT 59.955 55.0 0.00 0.0 39.06 3.69 F
572 573 0.253160 TAGGCCCACCACTCCTCAAT 60.253 55.0 0.00 0.0 39.06 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 2778 1.064832 GCCAGCTTCTCCATCTCCTTT 60.065 52.381 0.00 0.0 0.00 3.11 R
2383 2873 2.900546 TCCCTCTCTTCCTTGAAGTCAC 59.099 50.000 3.95 0.0 40.24 3.67 R
2755 3408 3.236047 TCAGTGCTTTAGGTGGTGAGTA 58.764 45.455 0.00 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.415087 GCATCCCTGTGGCCTCCT 61.415 66.667 3.32 0.00 0.00 3.69
18 19 2.988839 GCATCCCTGTGGCCTCCTT 61.989 63.158 3.32 0.00 0.00 3.36
19 20 1.077212 CATCCCTGTGGCCTCCTTG 60.077 63.158 3.32 0.00 0.00 3.61
20 21 1.229951 ATCCCTGTGGCCTCCTTGA 60.230 57.895 3.32 0.00 0.00 3.02
21 22 0.625683 ATCCCTGTGGCCTCCTTGAT 60.626 55.000 3.32 0.00 0.00 2.57
22 23 1.077212 CCCTGTGGCCTCCTTGATG 60.077 63.158 3.32 0.00 0.00 3.07
23 24 1.687612 CCTGTGGCCTCCTTGATGT 59.312 57.895 3.32 0.00 0.00 3.06
24 25 0.038744 CCTGTGGCCTCCTTGATGTT 59.961 55.000 3.32 0.00 0.00 2.71
25 26 1.171308 CTGTGGCCTCCTTGATGTTG 58.829 55.000 3.32 0.00 0.00 3.33
26 27 0.478072 TGTGGCCTCCTTGATGTTGT 59.522 50.000 3.32 0.00 0.00 3.32
27 28 1.133513 TGTGGCCTCCTTGATGTTGTT 60.134 47.619 3.32 0.00 0.00 2.83
28 29 1.963515 GTGGCCTCCTTGATGTTGTTT 59.036 47.619 3.32 0.00 0.00 2.83
29 30 1.962807 TGGCCTCCTTGATGTTGTTTG 59.037 47.619 3.32 0.00 0.00 2.93
30 31 1.337167 GGCCTCCTTGATGTTGTTTGC 60.337 52.381 0.00 0.00 0.00 3.68
31 32 1.615392 GCCTCCTTGATGTTGTTTGCT 59.385 47.619 0.00 0.00 0.00 3.91
32 33 2.036346 GCCTCCTTGATGTTGTTTGCTT 59.964 45.455 0.00 0.00 0.00 3.91
33 34 3.645884 CCTCCTTGATGTTGTTTGCTTG 58.354 45.455 0.00 0.00 0.00 4.01
34 35 3.553508 CCTCCTTGATGTTGTTTGCTTGG 60.554 47.826 0.00 0.00 0.00 3.61
35 36 2.137523 CCTTGATGTTGTTTGCTTGGC 58.862 47.619 0.00 0.00 0.00 4.52
36 37 2.137523 CTTGATGTTGTTTGCTTGGCC 58.862 47.619 0.00 0.00 0.00 5.36
37 38 1.412079 TGATGTTGTTTGCTTGGCCT 58.588 45.000 3.32 0.00 0.00 5.19
38 39 1.068895 TGATGTTGTTTGCTTGGCCTG 59.931 47.619 3.32 0.00 0.00 4.85
39 40 1.069049 GATGTTGTTTGCTTGGCCTGT 59.931 47.619 3.32 0.00 0.00 4.00
40 41 0.901124 TGTTGTTTGCTTGGCCTGTT 59.099 45.000 3.32 0.00 0.00 3.16
41 42 1.134848 TGTTGTTTGCTTGGCCTGTTC 60.135 47.619 3.32 0.00 0.00 3.18
42 43 1.134848 GTTGTTTGCTTGGCCTGTTCA 60.135 47.619 3.32 0.00 0.00 3.18
43 44 1.412079 TGTTTGCTTGGCCTGTTCAT 58.588 45.000 3.32 0.00 0.00 2.57
44 45 2.591923 TGTTTGCTTGGCCTGTTCATA 58.408 42.857 3.32 0.00 0.00 2.15
45 46 2.557924 TGTTTGCTTGGCCTGTTCATAG 59.442 45.455 3.32 0.00 0.00 2.23
46 47 2.558359 GTTTGCTTGGCCTGTTCATAGT 59.442 45.455 3.32 0.00 0.00 2.12
47 48 1.825090 TGCTTGGCCTGTTCATAGTG 58.175 50.000 3.32 0.00 0.00 2.74
48 49 1.098050 GCTTGGCCTGTTCATAGTGG 58.902 55.000 3.32 0.00 0.00 4.00
49 50 1.098050 CTTGGCCTGTTCATAGTGGC 58.902 55.000 3.32 0.00 44.22 5.01
51 52 3.813596 GCCTGTTCATAGTGGCCG 58.186 61.111 0.00 0.00 39.49 6.13
52 53 2.472909 GCCTGTTCATAGTGGCCGC 61.473 63.158 8.71 8.71 39.49 6.53
53 54 1.078497 CCTGTTCATAGTGGCCGCA 60.078 57.895 20.59 4.87 0.00 5.69
54 55 1.091771 CCTGTTCATAGTGGCCGCAG 61.092 60.000 20.59 8.11 0.00 5.18
55 56 1.709147 CTGTTCATAGTGGCCGCAGC 61.709 60.000 20.59 0.00 38.76 5.25
56 57 2.511373 TTCATAGTGGCCGCAGCG 60.511 61.111 20.59 8.18 41.24 5.18
69 70 4.393155 CAGCGGCTGCAGGTGGTA 62.393 66.667 21.93 0.00 46.23 3.25
70 71 4.394712 AGCGGCTGCAGGTGGTAC 62.395 66.667 21.93 0.00 46.23 3.34
71 72 4.697756 GCGGCTGCAGGTGGTACA 62.698 66.667 17.12 0.00 42.15 2.90
72 73 2.031919 CGGCTGCAGGTGGTACAA 59.968 61.111 17.12 0.00 44.16 2.41
73 74 1.377202 CGGCTGCAGGTGGTACAAT 60.377 57.895 17.12 0.00 44.16 2.71
74 75 1.647545 CGGCTGCAGGTGGTACAATG 61.648 60.000 17.12 0.00 44.16 2.82
75 76 0.322456 GGCTGCAGGTGGTACAATGA 60.322 55.000 17.12 0.00 44.16 2.57
76 77 0.804989 GCTGCAGGTGGTACAATGAC 59.195 55.000 17.12 0.00 44.16 3.06
77 78 1.881925 GCTGCAGGTGGTACAATGACA 60.882 52.381 17.12 0.00 44.16 3.58
78 79 1.806542 CTGCAGGTGGTACAATGACAC 59.193 52.381 5.57 0.00 44.16 3.67
79 80 1.141858 TGCAGGTGGTACAATGACACA 59.858 47.619 0.00 0.00 44.16 3.72
80 81 2.224744 TGCAGGTGGTACAATGACACAT 60.225 45.455 0.00 0.89 44.16 3.21
81 82 2.819608 GCAGGTGGTACAATGACACATT 59.180 45.455 0.00 0.00 44.16 2.71
82 83 3.366273 GCAGGTGGTACAATGACACATTG 60.366 47.826 18.75 18.75 44.16 2.82
83 84 4.071423 CAGGTGGTACAATGACACATTGA 58.929 43.478 24.67 10.43 44.16 2.57
84 85 4.072131 AGGTGGTACAATGACACATTGAC 58.928 43.478 24.67 18.22 44.16 3.18
85 86 4.072131 GGTGGTACAATGACACATTGACT 58.928 43.478 24.67 10.69 44.16 3.41
86 87 4.154195 GGTGGTACAATGACACATTGACTC 59.846 45.833 24.67 15.84 44.16 3.36
87 88 3.993736 TGGTACAATGACACATTGACTCG 59.006 43.478 24.67 4.84 31.92 4.18
88 89 4.242475 GGTACAATGACACATTGACTCGA 58.758 43.478 24.67 7.28 33.51 4.04
89 90 4.327357 GGTACAATGACACATTGACTCGAG 59.673 45.833 24.67 11.84 33.51 4.04
90 91 3.329386 ACAATGACACATTGACTCGAGG 58.671 45.455 24.67 0.17 33.51 4.63
91 92 3.244215 ACAATGACACATTGACTCGAGGT 60.244 43.478 24.67 2.33 33.51 3.85
92 93 2.438868 TGACACATTGACTCGAGGTG 57.561 50.000 18.41 16.24 35.88 4.00
93 94 1.960689 TGACACATTGACTCGAGGTGA 59.039 47.619 20.91 6.13 33.78 4.02
94 95 2.562738 TGACACATTGACTCGAGGTGAT 59.437 45.455 20.91 8.01 33.78 3.06
95 96 2.926200 GACACATTGACTCGAGGTGATG 59.074 50.000 20.91 19.00 33.78 3.07
96 97 2.274437 CACATTGACTCGAGGTGATGG 58.726 52.381 18.41 4.12 32.02 3.51
97 98 1.293924 CATTGACTCGAGGTGATGGC 58.706 55.000 18.41 0.00 0.00 4.40
98 99 0.179100 ATTGACTCGAGGTGATGGCG 60.179 55.000 18.41 0.00 0.00 5.69
99 100 1.532604 TTGACTCGAGGTGATGGCGT 61.533 55.000 18.41 0.00 0.00 5.68
100 101 1.226717 GACTCGAGGTGATGGCGTC 60.227 63.158 18.41 0.00 0.00 5.19
101 102 1.934220 GACTCGAGGTGATGGCGTCA 61.934 60.000 18.41 5.03 0.00 4.35
102 103 1.323271 ACTCGAGGTGATGGCGTCAT 61.323 55.000 18.41 0.00 39.48 3.06
103 104 0.873312 CTCGAGGTGATGGCGTCATG 60.873 60.000 7.54 4.00 39.48 3.07
104 105 1.884464 CGAGGTGATGGCGTCATGG 60.884 63.158 7.54 0.00 39.48 3.66
105 106 1.524621 GAGGTGATGGCGTCATGGG 60.525 63.158 7.54 0.00 39.48 4.00
106 107 3.211963 GGTGATGGCGTCATGGGC 61.212 66.667 7.54 0.00 39.48 5.36
108 109 2.124612 TGATGGCGTCATGGGCAG 60.125 61.111 7.54 0.00 46.24 4.85
109 110 2.903855 GATGGCGTCATGGGCAGG 60.904 66.667 7.54 0.00 46.24 4.85
110 111 4.511246 ATGGCGTCATGGGCAGGG 62.511 66.667 0.00 0.00 46.24 4.45
112 113 4.424711 GGCGTCATGGGCAGGGAA 62.425 66.667 11.01 0.00 0.00 3.97
113 114 2.361104 GCGTCATGGGCAGGGAAA 60.361 61.111 5.01 0.00 0.00 3.13
114 115 1.976474 GCGTCATGGGCAGGGAAAA 60.976 57.895 5.01 0.00 0.00 2.29
115 116 1.937546 GCGTCATGGGCAGGGAAAAG 61.938 60.000 5.01 0.00 0.00 2.27
116 117 1.315257 CGTCATGGGCAGGGAAAAGG 61.315 60.000 0.00 0.00 0.00 3.11
117 118 1.305213 TCATGGGCAGGGAAAAGGC 60.305 57.895 0.00 0.00 0.00 4.35
118 119 2.362889 ATGGGCAGGGAAAAGGCG 60.363 61.111 0.00 0.00 0.00 5.52
119 120 2.917897 ATGGGCAGGGAAAAGGCGA 61.918 57.895 0.00 0.00 0.00 5.54
120 121 2.043953 GGGCAGGGAAAAGGCGAT 60.044 61.111 0.00 0.00 0.00 4.58
121 122 2.418083 GGGCAGGGAAAAGGCGATG 61.418 63.158 0.00 0.00 0.00 3.84
122 123 2.491621 GCAGGGAAAAGGCGATGC 59.508 61.111 0.00 0.00 0.00 3.91
123 124 2.793946 CAGGGAAAAGGCGATGCG 59.206 61.111 0.00 0.00 0.00 4.73
124 125 2.438434 AGGGAAAAGGCGATGCGG 60.438 61.111 0.00 0.00 0.00 5.69
125 126 2.750237 GGGAAAAGGCGATGCGGT 60.750 61.111 0.00 0.00 0.00 5.68
126 127 2.340328 GGGAAAAGGCGATGCGGTT 61.340 57.895 0.00 0.00 0.00 4.44
127 128 1.027792 GGGAAAAGGCGATGCGGTTA 61.028 55.000 0.00 0.00 0.00 2.85
128 129 0.377203 GGAAAAGGCGATGCGGTTAG 59.623 55.000 0.00 0.00 0.00 2.34
129 130 0.377203 GAAAAGGCGATGCGGTTAGG 59.623 55.000 0.00 0.00 0.00 2.69
130 131 1.654023 AAAAGGCGATGCGGTTAGGC 61.654 55.000 0.00 0.00 0.00 3.93
131 132 4.891727 AGGCGATGCGGTTAGGCG 62.892 66.667 0.00 0.00 35.06 5.52
132 133 4.884257 GGCGATGCGGTTAGGCGA 62.884 66.667 0.00 0.00 35.06 5.54
133 134 3.330853 GCGATGCGGTTAGGCGAG 61.331 66.667 0.00 0.00 35.06 5.03
134 135 2.658593 CGATGCGGTTAGGCGAGG 60.659 66.667 0.00 0.00 35.06 4.63
135 136 2.967615 GATGCGGTTAGGCGAGGC 60.968 66.667 0.00 0.00 35.06 4.70
136 137 4.891727 ATGCGGTTAGGCGAGGCG 62.892 66.667 0.00 0.00 35.06 5.52
138 139 4.587189 GCGGTTAGGCGAGGCGAT 62.587 66.667 0.00 0.00 0.00 4.58
139 140 2.658593 CGGTTAGGCGAGGCGATG 60.659 66.667 0.00 0.00 0.00 3.84
140 141 2.280186 GGTTAGGCGAGGCGATGG 60.280 66.667 0.00 0.00 0.00 3.51
141 142 2.967615 GTTAGGCGAGGCGATGGC 60.968 66.667 0.00 0.00 38.90 4.40
142 143 4.585526 TTAGGCGAGGCGATGGCG 62.586 66.667 0.00 0.00 41.24 5.69
160 161 3.209812 TCGTGAGGCGATCGAGGG 61.210 66.667 21.57 0.92 45.68 4.30
161 162 3.209812 CGTGAGGCGATCGAGGGA 61.210 66.667 21.57 0.00 44.77 4.20
162 163 2.556459 CGTGAGGCGATCGAGGGAT 61.556 63.158 21.57 0.00 44.77 3.85
163 164 1.742768 GTGAGGCGATCGAGGGATT 59.257 57.895 21.57 0.00 31.51 3.01
164 165 0.959553 GTGAGGCGATCGAGGGATTA 59.040 55.000 21.57 0.00 31.51 1.75
165 166 1.068194 GTGAGGCGATCGAGGGATTAG 60.068 57.143 21.57 0.00 31.51 1.73
166 167 1.249407 GAGGCGATCGAGGGATTAGT 58.751 55.000 21.57 0.00 31.51 2.24
167 168 1.614413 GAGGCGATCGAGGGATTAGTT 59.386 52.381 21.57 0.00 31.51 2.24
168 169 2.818432 GAGGCGATCGAGGGATTAGTTA 59.182 50.000 21.57 0.00 31.51 2.24
169 170 3.432378 AGGCGATCGAGGGATTAGTTAT 58.568 45.455 21.57 0.00 31.51 1.89
170 171 4.597004 AGGCGATCGAGGGATTAGTTATA 58.403 43.478 21.57 0.00 31.51 0.98
171 172 5.014858 AGGCGATCGAGGGATTAGTTATAA 58.985 41.667 21.57 0.00 31.51 0.98
172 173 5.100943 GGCGATCGAGGGATTAGTTATAAC 58.899 45.833 21.57 7.57 31.51 1.89
173 174 5.336213 GGCGATCGAGGGATTAGTTATAACA 60.336 44.000 21.57 0.00 31.51 2.41
174 175 5.800941 GCGATCGAGGGATTAGTTATAACAG 59.199 44.000 21.57 0.00 31.51 3.16
175 176 6.349115 GCGATCGAGGGATTAGTTATAACAGA 60.349 42.308 21.57 5.95 31.51 3.41
176 177 7.591165 CGATCGAGGGATTAGTTATAACAGAA 58.409 38.462 17.65 11.14 31.51 3.02
177 178 7.751348 CGATCGAGGGATTAGTTATAACAGAAG 59.249 40.741 17.65 0.04 31.51 2.85
178 179 7.286215 TCGAGGGATTAGTTATAACAGAAGG 57.714 40.000 17.65 0.00 0.00 3.46
179 180 5.927115 CGAGGGATTAGTTATAACAGAAGGC 59.073 44.000 17.65 7.56 0.00 4.35
180 181 6.462487 CGAGGGATTAGTTATAACAGAAGGCA 60.462 42.308 17.65 0.00 0.00 4.75
181 182 7.208064 AGGGATTAGTTATAACAGAAGGCAA 57.792 36.000 17.65 1.10 0.00 4.52
182 183 7.816411 AGGGATTAGTTATAACAGAAGGCAAT 58.184 34.615 17.65 5.30 0.00 3.56
183 184 7.939588 AGGGATTAGTTATAACAGAAGGCAATC 59.060 37.037 17.65 12.10 0.00 2.67
184 185 7.719633 GGGATTAGTTATAACAGAAGGCAATCA 59.280 37.037 17.65 0.00 0.00 2.57
185 186 8.778358 GGATTAGTTATAACAGAAGGCAATCAG 58.222 37.037 17.65 0.00 0.00 2.90
186 187 9.547753 GATTAGTTATAACAGAAGGCAATCAGA 57.452 33.333 17.65 0.00 0.00 3.27
188 189 9.547753 TTAGTTATAACAGAAGGCAATCAGATC 57.452 33.333 17.65 0.00 0.00 2.75
189 190 7.568349 AGTTATAACAGAAGGCAATCAGATCA 58.432 34.615 17.65 0.00 0.00 2.92
190 191 8.216423 AGTTATAACAGAAGGCAATCAGATCAT 58.784 33.333 17.65 0.00 0.00 2.45
191 192 8.502387 GTTATAACAGAAGGCAATCAGATCATC 58.498 37.037 10.81 0.00 0.00 2.92
192 193 4.774660 ACAGAAGGCAATCAGATCATCT 57.225 40.909 0.00 0.00 0.00 2.90
193 194 4.706035 ACAGAAGGCAATCAGATCATCTC 58.294 43.478 0.00 0.00 0.00 2.75
194 195 4.066490 CAGAAGGCAATCAGATCATCTCC 58.934 47.826 0.00 0.00 0.00 3.71
195 196 3.715315 AGAAGGCAATCAGATCATCTCCA 59.285 43.478 0.00 0.00 0.00 3.86
196 197 4.165565 AGAAGGCAATCAGATCATCTCCAA 59.834 41.667 0.00 0.00 0.00 3.53
197 198 4.726035 AGGCAATCAGATCATCTCCAAT 57.274 40.909 0.00 0.00 0.00 3.16
198 199 5.837770 AGGCAATCAGATCATCTCCAATA 57.162 39.130 0.00 0.00 0.00 1.90
199 200 5.806818 AGGCAATCAGATCATCTCCAATAG 58.193 41.667 0.00 0.00 0.00 1.73
200 201 4.395542 GGCAATCAGATCATCTCCAATAGC 59.604 45.833 0.00 0.00 0.00 2.97
201 202 4.395542 GCAATCAGATCATCTCCAATAGCC 59.604 45.833 0.00 0.00 0.00 3.93
202 203 3.949842 TCAGATCATCTCCAATAGCCG 57.050 47.619 0.00 0.00 0.00 5.52
203 204 2.028658 TCAGATCATCTCCAATAGCCGC 60.029 50.000 0.00 0.00 0.00 6.53
204 205 1.277557 AGATCATCTCCAATAGCCGCC 59.722 52.381 0.00 0.00 0.00 6.13
205 206 0.326264 ATCATCTCCAATAGCCGCCC 59.674 55.000 0.00 0.00 0.00 6.13
206 207 1.053835 TCATCTCCAATAGCCGCCCA 61.054 55.000 0.00 0.00 0.00 5.36
207 208 0.179020 CATCTCCAATAGCCGCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
208 209 0.179018 ATCTCCAATAGCCGCCCAAC 60.179 55.000 0.00 0.00 0.00 3.77
209 210 2.124901 TCCAATAGCCGCCCAACG 60.125 61.111 0.00 0.00 43.15 4.10
210 211 3.887868 CCAATAGCCGCCCAACGC 61.888 66.667 0.00 0.00 41.76 4.84
229 230 2.912542 GCTGCGCGCTAAAAACTAC 58.087 52.632 33.29 6.85 35.14 2.73
230 231 0.442699 GCTGCGCGCTAAAAACTACT 59.557 50.000 33.29 0.00 35.14 2.57
231 232 1.136057 GCTGCGCGCTAAAAACTACTT 60.136 47.619 33.29 0.00 35.14 2.24
232 233 2.664698 GCTGCGCGCTAAAAACTACTTT 60.665 45.455 33.29 0.00 35.14 2.66
233 234 2.902484 CTGCGCGCTAAAAACTACTTTG 59.098 45.455 33.29 0.00 0.00 2.77
234 235 1.642360 GCGCGCTAAAAACTACTTTGC 59.358 47.619 26.67 0.00 0.00 3.68
235 236 2.239201 CGCGCTAAAAACTACTTTGCC 58.761 47.619 5.56 0.00 0.00 4.52
236 237 2.239201 GCGCTAAAAACTACTTTGCCG 58.761 47.619 0.00 0.00 0.00 5.69
237 238 2.239201 CGCTAAAAACTACTTTGCCGC 58.761 47.619 0.00 0.00 0.00 6.53
238 239 2.239201 GCTAAAAACTACTTTGCCGCG 58.761 47.619 0.00 0.00 0.00 6.46
239 240 2.239201 CTAAAAACTACTTTGCCGCGC 58.761 47.619 0.00 0.00 0.00 6.86
240 241 0.659123 AAAAACTACTTTGCCGCGCG 60.659 50.000 25.67 25.67 0.00 6.86
241 242 3.588891 AAACTACTTTGCCGCGCGC 62.589 57.895 27.36 23.91 38.31 6.86
255 256 2.746277 GCGCCCATCGTCTGGTTT 60.746 61.111 0.00 0.00 44.30 3.27
256 257 3.039202 GCGCCCATCGTCTGGTTTG 62.039 63.158 0.00 0.00 44.30 2.93
257 258 1.375396 CGCCCATCGTCTGGTTTGA 60.375 57.895 6.14 0.00 44.30 2.69
258 259 1.635663 CGCCCATCGTCTGGTTTGAC 61.636 60.000 6.14 0.00 44.30 3.18
264 265 4.072088 GTCTGGTTTGACGCGGCG 62.072 66.667 22.36 22.36 0.00 6.46
265 266 4.287781 TCTGGTTTGACGCGGCGA 62.288 61.111 30.94 3.40 0.00 5.54
266 267 3.777925 CTGGTTTGACGCGGCGAG 61.778 66.667 30.94 11.17 0.00 5.03
314 315 4.341240 GCAGCGCGCATACGTAGC 62.341 66.667 35.10 19.72 42.83 3.58
316 317 2.353607 AGCGCGCATACGTAGCTC 60.354 61.111 35.10 0.00 46.76 4.09
317 318 2.353607 GCGCGCATACGTAGCTCT 60.354 61.111 29.10 0.00 42.83 4.09
318 319 1.082300 GCGCGCATACGTAGCTCTA 60.082 57.895 29.10 0.00 42.83 2.43
319 320 1.060726 GCGCGCATACGTAGCTCTAG 61.061 60.000 29.10 0.00 42.83 2.43
320 321 1.060726 CGCGCATACGTAGCTCTAGC 61.061 60.000 8.75 0.00 42.83 3.42
321 322 0.040336 GCGCATACGTAGCTCTAGCA 60.040 55.000 0.30 0.00 42.33 3.49
322 323 1.599667 GCGCATACGTAGCTCTAGCAA 60.600 52.381 0.30 0.00 42.33 3.91
323 324 2.727777 CGCATACGTAGCTCTAGCAAA 58.272 47.619 0.08 0.00 37.84 3.68
324 325 2.721603 CGCATACGTAGCTCTAGCAAAG 59.278 50.000 0.08 0.00 37.84 2.77
325 326 2.473235 GCATACGTAGCTCTAGCAAAGC 59.527 50.000 0.08 0.00 45.16 3.51
326 327 2.470196 TACGTAGCTCTAGCAAAGCG 57.530 50.000 4.54 5.52 44.59 4.68
327 328 0.802607 ACGTAGCTCTAGCAAAGCGC 60.803 55.000 0.00 0.00 44.59 5.92
328 329 0.802222 CGTAGCTCTAGCAAAGCGCA 60.802 55.000 11.47 0.00 46.13 6.09
329 330 1.359848 GTAGCTCTAGCAAAGCGCAA 58.640 50.000 11.47 0.00 46.13 4.85
330 331 1.732259 GTAGCTCTAGCAAAGCGCAAA 59.268 47.619 11.47 0.00 46.13 3.68
331 332 1.238439 AGCTCTAGCAAAGCGCAAAA 58.762 45.000 11.47 0.00 46.13 2.44
332 333 1.608590 AGCTCTAGCAAAGCGCAAAAA 59.391 42.857 11.47 0.00 46.13 1.94
333 334 2.229784 AGCTCTAGCAAAGCGCAAAAAT 59.770 40.909 11.47 0.00 46.13 1.82
334 335 3.440173 AGCTCTAGCAAAGCGCAAAAATA 59.560 39.130 11.47 0.00 46.13 1.40
335 336 3.543889 GCTCTAGCAAAGCGCAAAAATAC 59.456 43.478 11.47 0.00 46.13 1.89
336 337 4.722194 CTCTAGCAAAGCGCAAAAATACA 58.278 39.130 11.47 0.00 46.13 2.29
337 338 4.722194 TCTAGCAAAGCGCAAAAATACAG 58.278 39.130 11.47 0.00 46.13 2.74
338 339 2.061028 AGCAAAGCGCAAAAATACAGC 58.939 42.857 11.47 0.00 46.13 4.40
342 343 2.979036 CGCAAAAATACAGCGCGC 59.021 55.556 26.66 26.66 45.14 6.86
343 344 2.823894 CGCAAAAATACAGCGCGCG 61.824 57.895 28.44 28.44 45.14 6.86
344 345 2.979036 CAAAAATACAGCGCGCGC 59.021 55.556 45.10 45.10 42.33 6.86
366 367 5.890110 CGACTCTCGCATAAACAACATAT 57.110 39.130 0.00 0.00 31.14 1.78
367 368 5.660391 CGACTCTCGCATAAACAACATATG 58.340 41.667 0.00 0.00 34.55 1.78
383 384 7.795859 ACAACATATGCATTTTAAACACAAGC 58.204 30.769 3.54 0.00 0.00 4.01
384 385 7.440556 ACAACATATGCATTTTAAACACAAGCA 59.559 29.630 3.54 0.00 34.78 3.91
385 386 7.959689 ACATATGCATTTTAAACACAAGCAA 57.040 28.000 3.54 0.00 33.91 3.91
386 387 8.375608 ACATATGCATTTTAAACACAAGCAAA 57.624 26.923 3.54 0.00 33.91 3.68
387 388 8.834465 ACATATGCATTTTAAACACAAGCAAAA 58.166 25.926 3.54 0.00 33.91 2.44
388 389 9.661187 CATATGCATTTTAAACACAAGCAAAAA 57.339 25.926 3.54 0.00 33.91 1.94
389 390 9.881529 ATATGCATTTTAAACACAAGCAAAAAG 57.118 25.926 3.54 0.00 33.91 2.27
390 391 7.369803 TGCATTTTAAACACAAGCAAAAAGA 57.630 28.000 0.00 0.00 0.00 2.52
391 392 7.983307 TGCATTTTAAACACAAGCAAAAAGAT 58.017 26.923 0.00 0.00 0.00 2.40
392 393 8.121708 TGCATTTTAAACACAAGCAAAAAGATC 58.878 29.630 0.00 0.00 0.00 2.75
393 394 8.121708 GCATTTTAAACACAAGCAAAAAGATCA 58.878 29.630 0.00 0.00 0.00 2.92
394 395 9.985318 CATTTTAAACACAAGCAAAAAGATCAA 57.015 25.926 0.00 0.00 0.00 2.57
396 397 9.818796 TTTTAAACACAAGCAAAAAGATCAAAC 57.181 25.926 0.00 0.00 0.00 2.93
397 398 8.539770 TTAAACACAAGCAAAAAGATCAAACA 57.460 26.923 0.00 0.00 0.00 2.83
398 399 6.407475 AACACAAGCAAAAAGATCAAACAC 57.593 33.333 0.00 0.00 0.00 3.32
399 400 5.477510 ACACAAGCAAAAAGATCAAACACA 58.522 33.333 0.00 0.00 0.00 3.72
400 401 5.931146 ACACAAGCAAAAAGATCAAACACAA 59.069 32.000 0.00 0.00 0.00 3.33
401 402 6.426328 ACACAAGCAAAAAGATCAAACACAAA 59.574 30.769 0.00 0.00 0.00 2.83
402 403 6.737750 CACAAGCAAAAAGATCAAACACAAAC 59.262 34.615 0.00 0.00 0.00 2.93
403 404 6.426328 ACAAGCAAAAAGATCAAACACAAACA 59.574 30.769 0.00 0.00 0.00 2.83
404 405 7.041508 ACAAGCAAAAAGATCAAACACAAACAA 60.042 29.630 0.00 0.00 0.00 2.83
405 406 7.432350 AGCAAAAAGATCAAACACAAACAAA 57.568 28.000 0.00 0.00 0.00 2.83
406 407 7.869800 AGCAAAAAGATCAAACACAAACAAAA 58.130 26.923 0.00 0.00 0.00 2.44
407 408 8.513774 AGCAAAAAGATCAAACACAAACAAAAT 58.486 25.926 0.00 0.00 0.00 1.82
408 409 9.766277 GCAAAAAGATCAAACACAAACAAAATA 57.234 25.926 0.00 0.00 0.00 1.40
516 517 9.248291 ACAACAAATAGTTCAACAATCAACATC 57.752 29.630 0.00 0.00 38.74 3.06
517 518 9.247126 CAACAAATAGTTCAACAATCAACATCA 57.753 29.630 0.00 0.00 38.74 3.07
518 519 9.814899 AACAAATAGTTCAACAATCAACATCAA 57.185 25.926 0.00 0.00 34.74 2.57
519 520 9.814899 ACAAATAGTTCAACAATCAACATCAAA 57.185 25.926 0.00 0.00 0.00 2.69
521 522 8.506140 AATAGTTCAACAATCAACATCAAACG 57.494 30.769 0.00 0.00 0.00 3.60
522 523 4.739716 AGTTCAACAATCAACATCAAACGC 59.260 37.500 0.00 0.00 0.00 4.84
523 524 4.298744 TCAACAATCAACATCAAACGCA 57.701 36.364 0.00 0.00 0.00 5.24
524 525 4.041049 TCAACAATCAACATCAAACGCAC 58.959 39.130 0.00 0.00 0.00 5.34
525 526 3.706802 ACAATCAACATCAAACGCACA 57.293 38.095 0.00 0.00 0.00 4.57
526 527 4.039151 ACAATCAACATCAAACGCACAA 57.961 36.364 0.00 0.00 0.00 3.33
527 528 4.428209 ACAATCAACATCAAACGCACAAA 58.572 34.783 0.00 0.00 0.00 2.83
528 529 5.049167 ACAATCAACATCAAACGCACAAAT 58.951 33.333 0.00 0.00 0.00 2.32
529 530 5.175491 ACAATCAACATCAAACGCACAAATC 59.825 36.000 0.00 0.00 0.00 2.17
530 531 4.298744 TCAACATCAAACGCACAAATCA 57.701 36.364 0.00 0.00 0.00 2.57
531 532 4.041049 TCAACATCAAACGCACAAATCAC 58.959 39.130 0.00 0.00 0.00 3.06
532 533 2.649516 ACATCAAACGCACAAATCACG 58.350 42.857 0.00 0.00 0.00 4.35
533 534 2.289274 ACATCAAACGCACAAATCACGA 59.711 40.909 0.00 0.00 0.00 4.35
534 535 3.058293 ACATCAAACGCACAAATCACGAT 60.058 39.130 0.00 0.00 0.00 3.73
535 536 2.914861 TCAAACGCACAAATCACGATG 58.085 42.857 0.00 0.00 0.00 3.84
536 537 1.383080 CAAACGCACAAATCACGATGC 59.617 47.619 0.00 0.00 34.66 3.91
537 538 0.874390 AACGCACAAATCACGATGCT 59.126 45.000 0.00 0.00 35.88 3.79
538 539 0.443869 ACGCACAAATCACGATGCTC 59.556 50.000 0.00 0.00 35.88 4.26
539 540 0.723414 CGCACAAATCACGATGCTCT 59.277 50.000 0.00 0.00 35.88 4.09
540 541 1.129251 CGCACAAATCACGATGCTCTT 59.871 47.619 0.00 0.00 35.88 2.85
541 542 2.413239 CGCACAAATCACGATGCTCTTT 60.413 45.455 0.00 0.00 35.88 2.52
542 543 2.912967 GCACAAATCACGATGCTCTTTG 59.087 45.455 0.00 0.00 35.16 2.77
543 544 3.610114 GCACAAATCACGATGCTCTTTGT 60.610 43.478 0.00 0.00 39.81 2.83
544 545 4.153986 CACAAATCACGATGCTCTTTGTC 58.846 43.478 0.00 0.00 37.80 3.18
545 546 3.120546 ACAAATCACGATGCTCTTTGTCG 60.121 43.478 0.00 0.00 35.70 4.35
546 547 1.645034 ATCACGATGCTCTTTGTCGG 58.355 50.000 0.00 0.00 39.53 4.79
547 548 1.014044 TCACGATGCTCTTTGTCGGC 61.014 55.000 0.00 0.00 39.53 5.54
548 549 1.741770 ACGATGCTCTTTGTCGGCC 60.742 57.895 0.00 0.00 39.53 6.13
549 550 1.741401 CGATGCTCTTTGTCGGCCA 60.741 57.895 2.24 0.00 0.00 5.36
550 551 1.091771 CGATGCTCTTTGTCGGCCAT 61.092 55.000 2.24 0.00 0.00 4.40
551 552 1.098050 GATGCTCTTTGTCGGCCATT 58.902 50.000 2.24 0.00 0.00 3.16
552 553 1.064654 GATGCTCTTTGTCGGCCATTC 59.935 52.381 2.24 0.00 0.00 2.67
553 554 0.036732 TGCTCTTTGTCGGCCATTCT 59.963 50.000 2.24 0.00 0.00 2.40
554 555 1.277842 TGCTCTTTGTCGGCCATTCTA 59.722 47.619 2.24 0.00 0.00 2.10
555 556 1.936547 GCTCTTTGTCGGCCATTCTAG 59.063 52.381 2.24 0.00 0.00 2.43
556 557 2.555199 CTCTTTGTCGGCCATTCTAGG 58.445 52.381 2.24 0.00 0.00 3.02
564 565 4.986467 CCATTCTAGGCCCACCAC 57.014 61.111 0.00 0.00 39.06 4.16
565 566 2.311287 CCATTCTAGGCCCACCACT 58.689 57.895 0.00 0.00 39.06 4.00
566 567 0.181350 CCATTCTAGGCCCACCACTC 59.819 60.000 0.00 0.00 39.06 3.51
567 568 0.181350 CATTCTAGGCCCACCACTCC 59.819 60.000 0.00 0.00 39.06 3.85
568 569 0.044855 ATTCTAGGCCCACCACTCCT 59.955 55.000 0.00 0.00 39.06 3.69
569 570 0.617820 TTCTAGGCCCACCACTCCTC 60.618 60.000 0.00 0.00 39.06 3.71
570 571 1.306141 CTAGGCCCACCACTCCTCA 60.306 63.158 0.00 0.00 39.06 3.86
571 572 0.909610 CTAGGCCCACCACTCCTCAA 60.910 60.000 0.00 0.00 39.06 3.02
572 573 0.253160 TAGGCCCACCACTCCTCAAT 60.253 55.000 0.00 0.00 39.06 2.57
573 574 1.379044 GGCCCACCACTCCTCAATG 60.379 63.158 0.00 0.00 35.26 2.82
574 575 1.685224 GCCCACCACTCCTCAATGA 59.315 57.895 0.00 0.00 0.00 2.57
575 576 0.678048 GCCCACCACTCCTCAATGAC 60.678 60.000 0.00 0.00 0.00 3.06
576 577 0.692476 CCCACCACTCCTCAATGACA 59.308 55.000 0.00 0.00 0.00 3.58
577 578 1.283029 CCCACCACTCCTCAATGACAT 59.717 52.381 0.00 0.00 0.00 3.06
578 579 2.636830 CCACCACTCCTCAATGACATC 58.363 52.381 0.00 0.00 0.00 3.06
579 580 2.636830 CACCACTCCTCAATGACATCC 58.363 52.381 0.00 0.00 0.00 3.51
580 581 2.238144 CACCACTCCTCAATGACATCCT 59.762 50.000 0.00 0.00 0.00 3.24
581 582 2.915604 ACCACTCCTCAATGACATCCTT 59.084 45.455 0.00 0.00 0.00 3.36
582 583 3.054802 ACCACTCCTCAATGACATCCTTC 60.055 47.826 0.00 0.00 0.00 3.46
583 584 3.199508 CCACTCCTCAATGACATCCTTCT 59.800 47.826 0.00 0.00 0.00 2.85
584 585 4.190001 CACTCCTCAATGACATCCTTCTG 58.810 47.826 0.00 0.00 0.00 3.02
585 586 4.081254 CACTCCTCAATGACATCCTTCTGA 60.081 45.833 0.00 0.00 0.00 3.27
586 587 4.533707 ACTCCTCAATGACATCCTTCTGAA 59.466 41.667 0.00 0.00 0.00 3.02
587 588 5.095145 TCCTCAATGACATCCTTCTGAAG 57.905 43.478 10.46 10.46 0.00 3.02
588 589 4.779489 TCCTCAATGACATCCTTCTGAAGA 59.221 41.667 18.68 5.61 0.00 2.87
589 590 4.874966 CCTCAATGACATCCTTCTGAAGAC 59.125 45.833 18.68 5.54 0.00 3.01
590 591 4.836825 TCAATGACATCCTTCTGAAGACC 58.163 43.478 18.68 3.83 0.00 3.85
591 592 4.286808 TCAATGACATCCTTCTGAAGACCA 59.713 41.667 18.68 8.76 0.00 4.02
592 593 5.045359 TCAATGACATCCTTCTGAAGACCAT 60.045 40.000 18.68 10.39 0.00 3.55
593 594 4.478206 TGACATCCTTCTGAAGACCATC 57.522 45.455 18.68 10.80 0.00 3.51
594 595 3.840078 TGACATCCTTCTGAAGACCATCA 59.160 43.478 18.68 12.96 0.00 3.07
595 596 4.472470 TGACATCCTTCTGAAGACCATCAT 59.528 41.667 18.68 0.00 0.00 2.45
596 597 4.778579 ACATCCTTCTGAAGACCATCATG 58.221 43.478 18.68 11.60 0.00 3.07
597 598 3.272574 TCCTTCTGAAGACCATCATGC 57.727 47.619 18.68 0.00 0.00 4.06
598 599 1.938577 CCTTCTGAAGACCATCATGCG 59.061 52.381 18.68 0.00 0.00 4.73
599 600 1.329906 CTTCTGAAGACCATCATGCGC 59.670 52.381 12.01 0.00 0.00 6.09
600 601 0.462581 TCTGAAGACCATCATGCGCC 60.463 55.000 4.18 0.00 0.00 6.53
601 602 1.769098 CTGAAGACCATCATGCGCCG 61.769 60.000 4.18 0.00 0.00 6.46
602 603 3.173390 GAAGACCATCATGCGCCGC 62.173 63.158 4.18 0.00 0.00 6.53
620 621 3.409856 GGGACGTCGAATGGCATG 58.590 61.111 9.92 0.00 0.00 4.06
621 622 1.153449 GGGACGTCGAATGGCATGA 60.153 57.895 9.92 0.00 0.00 3.07
622 623 0.532862 GGGACGTCGAATGGCATGAT 60.533 55.000 9.92 0.00 0.00 2.45
623 624 1.270094 GGGACGTCGAATGGCATGATA 60.270 52.381 9.92 0.00 0.00 2.15
624 625 2.061773 GGACGTCGAATGGCATGATAG 58.938 52.381 9.92 0.00 0.00 2.08
625 626 2.061773 GACGTCGAATGGCATGATAGG 58.938 52.381 0.00 0.00 0.00 2.57
626 627 1.686587 ACGTCGAATGGCATGATAGGA 59.313 47.619 0.00 0.00 0.00 2.94
717 723 2.877786 CCCAAAAATCCACCACTTTTGC 59.122 45.455 0.00 0.00 38.26 3.68
930 970 0.683973 CACTCCACTCCACTCTGCTT 59.316 55.000 0.00 0.00 0.00 3.91
1004 1065 0.882484 TCGCCGTTGTTGAAGATGCA 60.882 50.000 0.00 0.00 0.00 3.96
1119 1217 2.835027 AGGGTTCAAGTGTTCTTCGAC 58.165 47.619 0.00 0.00 0.00 4.20
1144 1243 4.072131 GAGACAATGGTTTGGAGCAGTTA 58.928 43.478 0.00 0.00 37.15 2.24
1180 1279 5.560724 AGGTTCATTACTGTGCTACAATGT 58.439 37.500 0.00 0.00 31.72 2.71
1190 1289 2.218759 GTGCTACAATGTAGGCGAATCG 59.781 50.000 20.56 0.00 0.00 3.34
1281 1383 2.028748 GGCCCCATGCATGAAATATGTC 60.029 50.000 28.31 7.04 43.89 3.06
1285 1401 3.302555 CCATGCATGAAATATGTCGCAC 58.697 45.455 28.31 0.00 31.22 5.34
1358 1493 4.713321 GGTCAGTGTTATCCAACTAGGGTA 59.287 45.833 0.00 0.00 38.24 3.69
1407 1552 4.401022 AGTCTGCAGATGTTTGGAATTGA 58.599 39.130 21.47 0.00 0.00 2.57
1512 1719 4.022935 TGAAACATGATTTGGACTGTCTGC 60.023 41.667 7.85 0.00 0.00 4.26
1518 1725 1.527034 TTTGGACTGTCTGCAGATGC 58.473 50.000 21.47 10.14 45.28 3.91
1580 1937 7.044181 ACATGATTTGTACTGTCTGTAGATGG 58.956 38.462 0.00 0.00 36.57 3.51
1698 2078 5.073144 TGAGGGGATTATCACTATTTGGACC 59.927 44.000 0.00 0.00 0.00 4.46
1757 2137 6.347321 GGTTCAGTTGACCAAAACTTGTTTTG 60.347 38.462 24.07 24.07 38.34 2.44
2101 2590 2.158608 AGTTGGAGAAGGTGAACAAGGG 60.159 50.000 0.00 0.00 0.00 3.95
2195 2685 2.847327 ACAACAGGGTCATGAGTGAG 57.153 50.000 0.00 0.00 34.36 3.51
2383 2873 0.842467 AACACCAGGAAGGAGAGGGG 60.842 60.000 0.00 0.00 41.22 4.79
2738 3390 9.558396 AAATTGTTGATCACATAAACCACAAAT 57.442 25.926 8.85 0.00 34.43 2.32
2770 3423 5.109903 GCATAGTGTACTCACCACCTAAAG 58.890 45.833 0.00 0.00 44.83 1.85
2772 3425 2.969950 AGTGTACTCACCACCTAAAGCA 59.030 45.455 0.00 0.00 44.83 3.91
2773 3426 3.064931 GTGTACTCACCACCTAAAGCAC 58.935 50.000 0.00 0.00 38.51 4.40
2775 3428 2.550830 ACTCACCACCTAAAGCACTG 57.449 50.000 0.00 0.00 0.00 3.66
2819 3472 3.188895 GCTCGACAAAGCCAACTAAAG 57.811 47.619 0.00 0.00 36.22 1.85
2824 3477 3.632189 GACAAAGCCAACTAAAGCACTG 58.368 45.455 0.00 0.00 0.00 3.66
2868 3534 3.188895 GCTCGACAAAGCCAACTAAAG 57.811 47.619 0.00 0.00 36.22 1.85
2873 3587 3.632189 GACAAAGCCAACTAAAGCACTG 58.368 45.455 0.00 0.00 0.00 3.66
2924 3697 4.020543 ACAAAGCCAACTAAACCACTCAA 58.979 39.130 0.00 0.00 0.00 3.02
2939 3712 7.563724 AACCACTCAATTAGTCTTTAGGGTA 57.436 36.000 0.00 0.00 35.76 3.69
2941 3714 6.958192 ACCACTCAATTAGTCTTTAGGGTAGA 59.042 38.462 0.00 0.00 35.76 2.59
2943 3716 8.145122 CCACTCAATTAGTCTTTAGGGTAGATC 58.855 40.741 0.00 0.00 35.76 2.75
2966 3739 3.188895 GCTCGACAAAGCCAACTAAAG 57.811 47.619 0.00 0.00 36.22 1.85
2971 3744 3.632189 GACAAAGCCAACTAAAGCACTG 58.368 45.455 0.00 0.00 0.00 3.66
2985 3758 9.998106 AACTAAAGCACTGAATTAGTCTTTAGA 57.002 29.630 25.08 7.55 45.48 2.10
2993 3766 7.433719 CACTGAATTAGTCTTTAGAGTGGATCG 59.566 40.741 0.00 0.00 37.60 3.69
2994 3767 6.806751 TGAATTAGTCTTTAGAGTGGATCGG 58.193 40.000 0.00 0.00 0.00 4.18
3395 4168 3.548014 CGACAAAGCCAACTAAACCACTG 60.548 47.826 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.077212 CAAGGAGGCCACAGGGATG 60.077 63.158 5.01 0.00 35.59 3.51
4 5 1.077212 CATCAAGGAGGCCACAGGG 60.077 63.158 5.01 0.00 37.18 4.45
5 6 0.038744 AACATCAAGGAGGCCACAGG 59.961 55.000 5.01 0.00 0.00 4.00
9 10 1.962807 CAAACAACATCAAGGAGGCCA 59.037 47.619 5.01 0.00 0.00 5.36
10 11 1.337167 GCAAACAACATCAAGGAGGCC 60.337 52.381 0.00 0.00 0.00 5.19
11 12 1.615392 AGCAAACAACATCAAGGAGGC 59.385 47.619 0.00 0.00 0.00 4.70
12 13 3.553508 CCAAGCAAACAACATCAAGGAGG 60.554 47.826 0.00 0.00 0.00 4.30
13 14 3.645884 CCAAGCAAACAACATCAAGGAG 58.354 45.455 0.00 0.00 0.00 3.69
14 15 2.224018 GCCAAGCAAACAACATCAAGGA 60.224 45.455 0.00 0.00 0.00 3.36
15 16 2.137523 GCCAAGCAAACAACATCAAGG 58.862 47.619 0.00 0.00 0.00 3.61
16 17 2.137523 GGCCAAGCAAACAACATCAAG 58.862 47.619 0.00 0.00 0.00 3.02
17 18 1.761784 AGGCCAAGCAAACAACATCAA 59.238 42.857 5.01 0.00 0.00 2.57
18 19 1.068895 CAGGCCAAGCAAACAACATCA 59.931 47.619 5.01 0.00 0.00 3.07
19 20 1.069049 ACAGGCCAAGCAAACAACATC 59.931 47.619 5.01 0.00 0.00 3.06
20 21 1.122227 ACAGGCCAAGCAAACAACAT 58.878 45.000 5.01 0.00 0.00 2.71
21 22 0.901124 AACAGGCCAAGCAAACAACA 59.099 45.000 5.01 0.00 0.00 3.33
22 23 1.134848 TGAACAGGCCAAGCAAACAAC 60.135 47.619 5.01 0.00 0.00 3.32
23 24 1.189752 TGAACAGGCCAAGCAAACAA 58.810 45.000 5.01 0.00 0.00 2.83
24 25 1.412079 ATGAACAGGCCAAGCAAACA 58.588 45.000 5.01 0.00 0.00 2.83
25 26 2.558359 ACTATGAACAGGCCAAGCAAAC 59.442 45.455 5.01 0.00 0.00 2.93
26 27 2.557924 CACTATGAACAGGCCAAGCAAA 59.442 45.455 5.01 0.00 0.00 3.68
27 28 2.161855 CACTATGAACAGGCCAAGCAA 58.838 47.619 5.01 0.00 0.00 3.91
28 29 1.614051 CCACTATGAACAGGCCAAGCA 60.614 52.381 5.01 0.00 0.00 3.91
29 30 1.098050 CCACTATGAACAGGCCAAGC 58.902 55.000 5.01 0.00 0.00 4.01
30 31 1.098050 GCCACTATGAACAGGCCAAG 58.902 55.000 5.01 0.00 41.25 3.61
31 32 3.264574 GCCACTATGAACAGGCCAA 57.735 52.632 5.01 0.00 41.25 4.52
34 35 2.472909 GCGGCCACTATGAACAGGC 61.473 63.158 2.24 0.00 46.28 4.85
35 36 1.078497 TGCGGCCACTATGAACAGG 60.078 57.895 2.24 0.00 0.00 4.00
36 37 1.709147 GCTGCGGCCACTATGAACAG 61.709 60.000 6.12 0.00 0.00 3.16
37 38 1.745115 GCTGCGGCCACTATGAACA 60.745 57.895 6.12 0.00 0.00 3.18
38 39 2.813179 CGCTGCGGCCACTATGAAC 61.813 63.158 15.40 0.00 34.44 3.18
39 40 2.511373 CGCTGCGGCCACTATGAA 60.511 61.111 15.40 0.00 34.44 2.57
40 41 4.529219 CCGCTGCGGCCACTATGA 62.529 66.667 29.58 0.00 41.17 2.15
52 53 4.393155 TACCACCTGCAGCCGCTG 62.393 66.667 16.47 16.47 39.64 5.18
53 54 4.394712 GTACCACCTGCAGCCGCT 62.395 66.667 8.66 0.00 39.64 5.52
54 55 4.697756 TGTACCACCTGCAGCCGC 62.698 66.667 8.66 0.00 39.24 6.53
55 56 1.377202 ATTGTACCACCTGCAGCCG 60.377 57.895 8.66 0.24 0.00 5.52
56 57 0.322456 TCATTGTACCACCTGCAGCC 60.322 55.000 8.66 0.00 0.00 4.85
57 58 0.804989 GTCATTGTACCACCTGCAGC 59.195 55.000 8.66 0.00 0.00 5.25
58 59 1.806542 GTGTCATTGTACCACCTGCAG 59.193 52.381 6.78 6.78 0.00 4.41
59 60 1.141858 TGTGTCATTGTACCACCTGCA 59.858 47.619 0.00 0.00 0.00 4.41
60 61 1.890876 TGTGTCATTGTACCACCTGC 58.109 50.000 0.00 0.00 0.00 4.85
61 62 4.071423 TCAATGTGTCATTGTACCACCTG 58.929 43.478 17.93 0.00 0.00 4.00
62 63 4.072131 GTCAATGTGTCATTGTACCACCT 58.928 43.478 17.93 0.00 0.00 4.00
63 64 4.072131 AGTCAATGTGTCATTGTACCACC 58.928 43.478 17.93 5.33 0.00 4.61
64 65 4.143115 CGAGTCAATGTGTCATTGTACCAC 60.143 45.833 17.93 11.12 0.00 4.16
65 66 3.993736 CGAGTCAATGTGTCATTGTACCA 59.006 43.478 17.93 1.38 0.00 3.25
66 67 4.242475 TCGAGTCAATGTGTCATTGTACC 58.758 43.478 17.93 10.10 0.00 3.34
67 68 4.327357 CCTCGAGTCAATGTGTCATTGTAC 59.673 45.833 12.31 14.86 0.00 2.90
68 69 4.021456 ACCTCGAGTCAATGTGTCATTGTA 60.021 41.667 12.31 6.49 0.00 2.41
69 70 3.244215 ACCTCGAGTCAATGTGTCATTGT 60.244 43.478 12.31 4.44 0.00 2.71
70 71 3.124128 CACCTCGAGTCAATGTGTCATTG 59.876 47.826 12.31 14.05 0.00 2.82
71 72 3.006859 TCACCTCGAGTCAATGTGTCATT 59.993 43.478 12.31 0.00 0.00 2.57
72 73 2.562738 TCACCTCGAGTCAATGTGTCAT 59.437 45.455 12.31 0.00 0.00 3.06
73 74 1.960689 TCACCTCGAGTCAATGTGTCA 59.039 47.619 12.31 0.00 0.00 3.58
74 75 2.724977 TCACCTCGAGTCAATGTGTC 57.275 50.000 12.31 0.00 0.00 3.67
75 76 2.354103 CCATCACCTCGAGTCAATGTGT 60.354 50.000 12.31 0.00 0.00 3.72
76 77 2.274437 CCATCACCTCGAGTCAATGTG 58.726 52.381 12.31 11.69 0.00 3.21
77 78 1.406069 GCCATCACCTCGAGTCAATGT 60.406 52.381 12.31 0.00 0.00 2.71
78 79 1.293924 GCCATCACCTCGAGTCAATG 58.706 55.000 12.31 10.81 0.00 2.82
79 80 0.179100 CGCCATCACCTCGAGTCAAT 60.179 55.000 12.31 0.00 0.00 2.57
80 81 1.215382 CGCCATCACCTCGAGTCAA 59.785 57.895 12.31 0.00 0.00 3.18
81 82 1.934220 GACGCCATCACCTCGAGTCA 61.934 60.000 12.31 0.00 0.00 3.41
82 83 1.226717 GACGCCATCACCTCGAGTC 60.227 63.158 12.31 0.00 0.00 3.36
83 84 1.323271 ATGACGCCATCACCTCGAGT 61.323 55.000 12.31 0.00 41.24 4.18
84 85 0.873312 CATGACGCCATCACCTCGAG 60.873 60.000 5.13 5.13 41.24 4.04
85 86 1.141665 CATGACGCCATCACCTCGA 59.858 57.895 0.00 0.00 41.24 4.04
86 87 1.884464 CCATGACGCCATCACCTCG 60.884 63.158 0.00 0.00 41.24 4.63
87 88 1.524621 CCCATGACGCCATCACCTC 60.525 63.158 0.00 0.00 41.24 3.85
88 89 2.591753 CCCATGACGCCATCACCT 59.408 61.111 0.00 0.00 41.24 4.00
89 90 3.211963 GCCCATGACGCCATCACC 61.212 66.667 0.00 0.00 41.24 4.02
90 91 2.438254 TGCCCATGACGCCATCAC 60.438 61.111 0.00 0.00 41.24 3.06
91 92 2.124612 CTGCCCATGACGCCATCA 60.125 61.111 0.00 0.00 43.13 3.07
92 93 2.903855 CCTGCCCATGACGCCATC 60.904 66.667 0.00 0.00 0.00 3.51
93 94 4.511246 CCCTGCCCATGACGCCAT 62.511 66.667 0.00 0.00 0.00 4.40
95 96 3.936772 TTTCCCTGCCCATGACGCC 62.937 63.158 0.00 0.00 0.00 5.68
96 97 1.937546 CTTTTCCCTGCCCATGACGC 61.938 60.000 0.00 0.00 0.00 5.19
97 98 1.315257 CCTTTTCCCTGCCCATGACG 61.315 60.000 0.00 0.00 0.00 4.35
98 99 1.607801 GCCTTTTCCCTGCCCATGAC 61.608 60.000 0.00 0.00 0.00 3.06
99 100 1.305213 GCCTTTTCCCTGCCCATGA 60.305 57.895 0.00 0.00 0.00 3.07
100 101 2.713967 CGCCTTTTCCCTGCCCATG 61.714 63.158 0.00 0.00 0.00 3.66
101 102 2.228841 ATCGCCTTTTCCCTGCCCAT 62.229 55.000 0.00 0.00 0.00 4.00
102 103 2.917897 ATCGCCTTTTCCCTGCCCA 61.918 57.895 0.00 0.00 0.00 5.36
103 104 2.043953 ATCGCCTTTTCCCTGCCC 60.044 61.111 0.00 0.00 0.00 5.36
104 105 3.068729 GCATCGCCTTTTCCCTGCC 62.069 63.158 0.00 0.00 0.00 4.85
105 106 2.491621 GCATCGCCTTTTCCCTGC 59.508 61.111 0.00 0.00 0.00 4.85
106 107 2.764314 CCGCATCGCCTTTTCCCTG 61.764 63.158 0.00 0.00 0.00 4.45
107 108 2.438434 CCGCATCGCCTTTTCCCT 60.438 61.111 0.00 0.00 0.00 4.20
108 109 1.027792 TAACCGCATCGCCTTTTCCC 61.028 55.000 0.00 0.00 0.00 3.97
109 110 0.377203 CTAACCGCATCGCCTTTTCC 59.623 55.000 0.00 0.00 0.00 3.13
110 111 0.377203 CCTAACCGCATCGCCTTTTC 59.623 55.000 0.00 0.00 0.00 2.29
111 112 1.654023 GCCTAACCGCATCGCCTTTT 61.654 55.000 0.00 0.00 0.00 2.27
112 113 2.112815 GCCTAACCGCATCGCCTTT 61.113 57.895 0.00 0.00 0.00 3.11
113 114 2.513897 GCCTAACCGCATCGCCTT 60.514 61.111 0.00 0.00 0.00 4.35
114 115 4.891727 CGCCTAACCGCATCGCCT 62.892 66.667 0.00 0.00 0.00 5.52
115 116 4.884257 TCGCCTAACCGCATCGCC 62.884 66.667 0.00 0.00 0.00 5.54
116 117 3.330853 CTCGCCTAACCGCATCGC 61.331 66.667 0.00 0.00 0.00 4.58
117 118 2.658593 CCTCGCCTAACCGCATCG 60.659 66.667 0.00 0.00 0.00 3.84
118 119 2.967615 GCCTCGCCTAACCGCATC 60.968 66.667 0.00 0.00 0.00 3.91
119 120 4.891727 CGCCTCGCCTAACCGCAT 62.892 66.667 0.00 0.00 0.00 4.73
121 122 4.587189 ATCGCCTCGCCTAACCGC 62.587 66.667 0.00 0.00 0.00 5.68
122 123 2.658593 CATCGCCTCGCCTAACCG 60.659 66.667 0.00 0.00 0.00 4.44
123 124 2.280186 CCATCGCCTCGCCTAACC 60.280 66.667 0.00 0.00 0.00 2.85
124 125 2.967615 GCCATCGCCTCGCCTAAC 60.968 66.667 0.00 0.00 0.00 2.34
125 126 4.585526 CGCCATCGCCTCGCCTAA 62.586 66.667 0.00 0.00 0.00 2.69
144 145 2.076622 AATCCCTCGATCGCCTCACG 62.077 60.000 11.09 0.00 45.62 4.35
145 146 0.959553 TAATCCCTCGATCGCCTCAC 59.040 55.000 11.09 0.00 0.00 3.51
146 147 1.248486 CTAATCCCTCGATCGCCTCA 58.752 55.000 11.09 0.00 0.00 3.86
147 148 1.249407 ACTAATCCCTCGATCGCCTC 58.751 55.000 11.09 0.00 0.00 4.70
148 149 1.705873 AACTAATCCCTCGATCGCCT 58.294 50.000 11.09 0.00 0.00 5.52
149 150 3.870633 ATAACTAATCCCTCGATCGCC 57.129 47.619 11.09 0.00 0.00 5.54
150 151 5.706916 TGTTATAACTAATCCCTCGATCGC 58.293 41.667 16.33 0.00 0.00 4.58
151 152 7.142306 TCTGTTATAACTAATCCCTCGATCG 57.858 40.000 16.33 9.36 0.00 3.69
152 153 8.030106 CCTTCTGTTATAACTAATCCCTCGATC 58.970 40.741 16.33 0.00 0.00 3.69
153 154 7.525692 GCCTTCTGTTATAACTAATCCCTCGAT 60.526 40.741 16.33 0.00 0.00 3.59
154 155 6.239232 GCCTTCTGTTATAACTAATCCCTCGA 60.239 42.308 16.33 0.00 0.00 4.04
155 156 5.927115 GCCTTCTGTTATAACTAATCCCTCG 59.073 44.000 16.33 0.00 0.00 4.63
156 157 6.827727 TGCCTTCTGTTATAACTAATCCCTC 58.172 40.000 16.33 1.07 0.00 4.30
157 158 6.824958 TGCCTTCTGTTATAACTAATCCCT 57.175 37.500 16.33 0.00 0.00 4.20
158 159 7.719633 TGATTGCCTTCTGTTATAACTAATCCC 59.280 37.037 16.33 2.84 0.00 3.85
159 160 8.677148 TGATTGCCTTCTGTTATAACTAATCC 57.323 34.615 16.33 6.00 0.00 3.01
160 161 9.547753 TCTGATTGCCTTCTGTTATAACTAATC 57.452 33.333 16.33 13.04 0.00 1.75
162 163 9.547753 GATCTGATTGCCTTCTGTTATAACTAA 57.452 33.333 16.33 9.74 0.00 2.24
163 164 8.704668 TGATCTGATTGCCTTCTGTTATAACTA 58.295 33.333 16.33 2.49 0.00 2.24
164 165 7.568349 TGATCTGATTGCCTTCTGTTATAACT 58.432 34.615 16.33 0.00 0.00 2.24
165 166 7.792374 TGATCTGATTGCCTTCTGTTATAAC 57.208 36.000 8.75 8.75 0.00 1.89
166 167 8.435187 AGATGATCTGATTGCCTTCTGTTATAA 58.565 33.333 0.00 0.00 0.00 0.98
167 168 7.971201 AGATGATCTGATTGCCTTCTGTTATA 58.029 34.615 0.00 0.00 0.00 0.98
168 169 6.839454 AGATGATCTGATTGCCTTCTGTTAT 58.161 36.000 0.00 0.00 0.00 1.89
169 170 6.244552 AGATGATCTGATTGCCTTCTGTTA 57.755 37.500 0.00 0.00 0.00 2.41
170 171 5.113446 AGATGATCTGATTGCCTTCTGTT 57.887 39.130 0.00 0.00 0.00 3.16
171 172 4.444591 GGAGATGATCTGATTGCCTTCTGT 60.445 45.833 0.00 0.00 0.00 3.41
172 173 4.066490 GGAGATGATCTGATTGCCTTCTG 58.934 47.826 0.00 0.00 0.00 3.02
173 174 3.715315 TGGAGATGATCTGATTGCCTTCT 59.285 43.478 0.00 0.00 0.00 2.85
174 175 4.082665 TGGAGATGATCTGATTGCCTTC 57.917 45.455 0.00 0.00 0.00 3.46
175 176 4.515028 TTGGAGATGATCTGATTGCCTT 57.485 40.909 0.00 0.00 0.00 4.35
176 177 4.726035 ATTGGAGATGATCTGATTGCCT 57.274 40.909 0.00 0.00 0.00 4.75
177 178 4.395542 GCTATTGGAGATGATCTGATTGCC 59.604 45.833 0.00 0.00 0.00 4.52
178 179 4.395542 GGCTATTGGAGATGATCTGATTGC 59.604 45.833 0.00 4.13 0.00 3.56
179 180 4.630505 CGGCTATTGGAGATGATCTGATTG 59.369 45.833 0.00 0.00 0.00 2.67
180 181 4.829968 CGGCTATTGGAGATGATCTGATT 58.170 43.478 0.00 0.00 0.00 2.57
181 182 3.369261 GCGGCTATTGGAGATGATCTGAT 60.369 47.826 0.00 0.00 0.00 2.90
182 183 2.028658 GCGGCTATTGGAGATGATCTGA 60.029 50.000 0.00 0.00 0.00 3.27
183 184 2.344950 GCGGCTATTGGAGATGATCTG 58.655 52.381 0.00 0.00 0.00 2.90
184 185 1.277557 GGCGGCTATTGGAGATGATCT 59.722 52.381 0.00 0.00 0.00 2.75
185 186 1.677217 GGGCGGCTATTGGAGATGATC 60.677 57.143 9.56 0.00 0.00 2.92
186 187 0.326264 GGGCGGCTATTGGAGATGAT 59.674 55.000 9.56 0.00 0.00 2.45
187 188 1.053835 TGGGCGGCTATTGGAGATGA 61.054 55.000 9.56 0.00 0.00 2.92
188 189 0.179020 TTGGGCGGCTATTGGAGATG 60.179 55.000 9.56 0.00 0.00 2.90
189 190 0.179018 GTTGGGCGGCTATTGGAGAT 60.179 55.000 9.56 0.00 0.00 2.75
190 191 1.223487 GTTGGGCGGCTATTGGAGA 59.777 57.895 9.56 0.00 0.00 3.71
191 192 2.180204 CGTTGGGCGGCTATTGGAG 61.180 63.158 9.56 0.00 36.85 3.86
192 193 2.124901 CGTTGGGCGGCTATTGGA 60.125 61.111 9.56 0.00 36.85 3.53
193 194 3.887868 GCGTTGGGCGGCTATTGG 61.888 66.667 9.56 0.00 41.69 3.16
212 213 2.875080 AAGTAGTTTTTAGCGCGCAG 57.125 45.000 35.10 0.72 0.00 5.18
213 214 2.911120 CAAAGTAGTTTTTAGCGCGCA 58.089 42.857 35.10 16.82 0.00 6.09
214 215 1.642360 GCAAAGTAGTTTTTAGCGCGC 59.358 47.619 26.66 26.66 0.00 6.86
215 216 2.239201 GGCAAAGTAGTTTTTAGCGCG 58.761 47.619 0.00 0.00 0.00 6.86
216 217 2.239201 CGGCAAAGTAGTTTTTAGCGC 58.761 47.619 0.00 0.00 0.00 5.92
217 218 2.239201 GCGGCAAAGTAGTTTTTAGCG 58.761 47.619 0.00 0.00 0.00 4.26
218 219 2.239201 CGCGGCAAAGTAGTTTTTAGC 58.761 47.619 0.00 0.00 0.00 3.09
219 220 2.239201 GCGCGGCAAAGTAGTTTTTAG 58.761 47.619 8.83 0.00 0.00 1.85
220 221 1.398705 CGCGCGGCAAAGTAGTTTTTA 60.399 47.619 24.84 0.00 0.00 1.52
221 222 0.659123 CGCGCGGCAAAGTAGTTTTT 60.659 50.000 24.84 0.00 0.00 1.94
222 223 1.082366 CGCGCGGCAAAGTAGTTTT 60.082 52.632 24.84 0.00 0.00 2.43
223 224 2.554272 CGCGCGGCAAAGTAGTTT 59.446 55.556 24.84 0.00 0.00 2.66
224 225 4.084888 GCGCGCGGCAAAGTAGTT 62.085 61.111 33.06 0.00 42.87 2.24
247 248 4.072088 CGCCGCGTCAAACCAGAC 62.072 66.667 4.92 0.00 35.19 3.51
248 249 4.287781 TCGCCGCGTCAAACCAGA 62.288 61.111 13.39 0.00 0.00 3.86
249 250 3.777925 CTCGCCGCGTCAAACCAG 61.778 66.667 13.39 0.00 0.00 4.00
252 253 4.430423 CTGCTCGCCGCGTCAAAC 62.430 66.667 13.39 0.00 43.27 2.93
283 284 3.271014 CTGCATTTCAGCACGGCT 58.729 55.556 0.00 0.00 40.11 5.52
297 298 4.341240 GCTACGTATGCGCGCTGC 62.341 66.667 33.29 19.94 46.70 5.25
298 299 2.639926 GAGCTACGTATGCGCGCTG 61.640 63.158 33.29 20.67 44.30 5.18
299 300 1.504647 TAGAGCTACGTATGCGCGCT 61.505 55.000 33.29 19.73 45.98 5.92
300 301 1.060726 CTAGAGCTACGTATGCGCGC 61.061 60.000 27.26 27.26 42.83 6.86
301 302 1.060726 GCTAGAGCTACGTATGCGCG 61.061 60.000 0.00 0.00 38.83 6.86
302 303 0.040336 TGCTAGAGCTACGTATGCGC 60.040 55.000 0.00 0.00 41.15 6.09
303 304 2.401017 TTGCTAGAGCTACGTATGCG 57.599 50.000 0.19 0.19 42.66 4.73
304 305 2.473235 GCTTTGCTAGAGCTACGTATGC 59.527 50.000 2.72 2.19 42.66 3.14
305 306 2.721603 CGCTTTGCTAGAGCTACGTATG 59.278 50.000 2.72 0.00 42.66 2.39
306 307 2.859032 GCGCTTTGCTAGAGCTACGTAT 60.859 50.000 0.00 0.00 45.15 3.06
307 308 1.533338 GCGCTTTGCTAGAGCTACGTA 60.533 52.381 0.00 0.00 45.15 3.57
308 309 0.802607 GCGCTTTGCTAGAGCTACGT 60.803 55.000 0.00 0.00 45.15 3.57
309 310 1.920762 GCGCTTTGCTAGAGCTACG 59.079 57.895 0.00 2.89 45.15 3.51
314 315 4.722194 TGTATTTTTGCGCTTTGCTAGAG 58.278 39.130 9.73 0.00 46.63 2.43
315 316 4.722194 CTGTATTTTTGCGCTTTGCTAGA 58.278 39.130 9.73 0.00 46.63 2.43
316 317 3.301642 GCTGTATTTTTGCGCTTTGCTAG 59.698 43.478 9.73 0.00 46.63 3.42
317 318 3.241701 GCTGTATTTTTGCGCTTTGCTA 58.758 40.909 9.73 0.00 46.63 3.49
318 319 2.061028 GCTGTATTTTTGCGCTTTGCT 58.939 42.857 9.73 0.00 46.63 3.91
319 320 1.201693 CGCTGTATTTTTGCGCTTTGC 60.202 47.619 9.73 0.00 43.08 3.68
320 321 2.749477 CGCTGTATTTTTGCGCTTTG 57.251 45.000 9.73 0.00 43.08 2.77
326 327 2.979036 CGCGCGCTGTATTTTTGC 59.021 55.556 30.48 0.00 0.00 3.68
327 328 2.823894 CGCGCGCGCTGTATTTTTG 61.824 57.895 45.97 27.04 39.32 2.44
328 329 2.573167 CGCGCGCGCTGTATTTTT 60.573 55.556 45.97 0.00 39.32 1.94
329 330 3.483665 TCGCGCGCGCTGTATTTT 61.484 55.556 45.97 0.00 39.59 1.82
330 331 4.204891 GTCGCGCGCGCTGTATTT 62.205 61.111 45.97 0.00 39.59 1.40
344 345 5.660391 CATATGTTGTTTATGCGAGAGTCG 58.340 41.667 0.00 0.00 43.89 4.18
345 346 5.435557 GCATATGTTGTTTATGCGAGAGTC 58.564 41.667 4.29 0.00 41.64 3.36
346 347 5.409643 GCATATGTTGTTTATGCGAGAGT 57.590 39.130 4.29 0.00 41.64 3.24
357 358 8.281893 GCTTGTGTTTAAAATGCATATGTTGTT 58.718 29.630 0.00 0.00 0.00 2.83
358 359 7.440556 TGCTTGTGTTTAAAATGCATATGTTGT 59.559 29.630 0.00 0.00 0.00 3.32
359 360 7.794880 TGCTTGTGTTTAAAATGCATATGTTG 58.205 30.769 0.00 0.00 0.00 3.33
360 361 7.959689 TGCTTGTGTTTAAAATGCATATGTT 57.040 28.000 0.00 0.00 0.00 2.71
361 362 7.959689 TTGCTTGTGTTTAAAATGCATATGT 57.040 28.000 0.00 0.00 0.00 2.29
362 363 9.661187 TTTTTGCTTGTGTTTAAAATGCATATG 57.339 25.926 0.00 0.00 0.00 1.78
363 364 9.881529 CTTTTTGCTTGTGTTTAAAATGCATAT 57.118 25.926 0.00 0.00 0.00 1.78
364 365 9.102757 TCTTTTTGCTTGTGTTTAAAATGCATA 57.897 25.926 0.00 0.00 0.00 3.14
365 366 7.983307 TCTTTTTGCTTGTGTTTAAAATGCAT 58.017 26.923 0.00 0.00 0.00 3.96
366 367 7.369803 TCTTTTTGCTTGTGTTTAAAATGCA 57.630 28.000 0.00 0.00 0.00 3.96
367 368 8.121708 TGATCTTTTTGCTTGTGTTTAAAATGC 58.878 29.630 0.00 0.00 0.00 3.56
368 369 9.985318 TTGATCTTTTTGCTTGTGTTTAAAATG 57.015 25.926 0.00 0.00 0.00 2.32
370 371 9.818796 GTTTGATCTTTTTGCTTGTGTTTAAAA 57.181 25.926 0.00 0.00 0.00 1.52
371 372 8.993121 TGTTTGATCTTTTTGCTTGTGTTTAAA 58.007 25.926 0.00 0.00 0.00 1.52
372 373 8.439286 GTGTTTGATCTTTTTGCTTGTGTTTAA 58.561 29.630 0.00 0.00 0.00 1.52
373 374 7.600375 TGTGTTTGATCTTTTTGCTTGTGTTTA 59.400 29.630 0.00 0.00 0.00 2.01
374 375 6.426328 TGTGTTTGATCTTTTTGCTTGTGTTT 59.574 30.769 0.00 0.00 0.00 2.83
375 376 5.931146 TGTGTTTGATCTTTTTGCTTGTGTT 59.069 32.000 0.00 0.00 0.00 3.32
376 377 5.477510 TGTGTTTGATCTTTTTGCTTGTGT 58.522 33.333 0.00 0.00 0.00 3.72
377 378 6.406093 TTGTGTTTGATCTTTTTGCTTGTG 57.594 33.333 0.00 0.00 0.00 3.33
378 379 6.426328 TGTTTGTGTTTGATCTTTTTGCTTGT 59.574 30.769 0.00 0.00 0.00 3.16
379 380 6.829703 TGTTTGTGTTTGATCTTTTTGCTTG 58.170 32.000 0.00 0.00 0.00 4.01
380 381 7.432350 TTGTTTGTGTTTGATCTTTTTGCTT 57.568 28.000 0.00 0.00 0.00 3.91
381 382 7.432350 TTTGTTTGTGTTTGATCTTTTTGCT 57.568 28.000 0.00 0.00 0.00 3.91
382 383 8.672214 ATTTTGTTTGTGTTTGATCTTTTTGC 57.328 26.923 0.00 0.00 0.00 3.68
490 491 9.248291 GATGTTGATTGTTGAACTATTTGTTGT 57.752 29.630 0.00 0.00 39.30 3.32
491 492 9.247126 TGATGTTGATTGTTGAACTATTTGTTG 57.753 29.630 0.00 0.00 39.30 3.33
492 493 9.814899 TTGATGTTGATTGTTGAACTATTTGTT 57.185 25.926 0.00 0.00 42.38 2.83
493 494 9.814899 TTTGATGTTGATTGTTGAACTATTTGT 57.185 25.926 0.00 0.00 0.00 2.83
495 496 8.967218 CGTTTGATGTTGATTGTTGAACTATTT 58.033 29.630 0.00 0.00 0.00 1.40
496 497 7.114811 GCGTTTGATGTTGATTGTTGAACTATT 59.885 33.333 0.00 0.00 0.00 1.73
497 498 6.582295 GCGTTTGATGTTGATTGTTGAACTAT 59.418 34.615 0.00 0.00 0.00 2.12
498 499 5.912396 GCGTTTGATGTTGATTGTTGAACTA 59.088 36.000 0.00 0.00 0.00 2.24
499 500 4.739716 GCGTTTGATGTTGATTGTTGAACT 59.260 37.500 0.00 0.00 0.00 3.01
500 501 4.502282 TGCGTTTGATGTTGATTGTTGAAC 59.498 37.500 0.00 0.00 0.00 3.18
501 502 4.502282 GTGCGTTTGATGTTGATTGTTGAA 59.498 37.500 0.00 0.00 0.00 2.69
502 503 4.041049 GTGCGTTTGATGTTGATTGTTGA 58.959 39.130 0.00 0.00 0.00 3.18
503 504 3.795639 TGTGCGTTTGATGTTGATTGTTG 59.204 39.130 0.00 0.00 0.00 3.33
504 505 4.039151 TGTGCGTTTGATGTTGATTGTT 57.961 36.364 0.00 0.00 0.00 2.83
505 506 3.706802 TGTGCGTTTGATGTTGATTGT 57.293 38.095 0.00 0.00 0.00 2.71
506 507 5.175308 TGATTTGTGCGTTTGATGTTGATTG 59.825 36.000 0.00 0.00 0.00 2.67
507 508 5.175491 GTGATTTGTGCGTTTGATGTTGATT 59.825 36.000 0.00 0.00 0.00 2.57
508 509 4.681025 GTGATTTGTGCGTTTGATGTTGAT 59.319 37.500 0.00 0.00 0.00 2.57
509 510 4.041049 GTGATTTGTGCGTTTGATGTTGA 58.959 39.130 0.00 0.00 0.00 3.18
510 511 3.121729 CGTGATTTGTGCGTTTGATGTTG 60.122 43.478 0.00 0.00 0.00 3.33
511 512 3.042189 CGTGATTTGTGCGTTTGATGTT 58.958 40.909 0.00 0.00 0.00 2.71
512 513 2.289274 TCGTGATTTGTGCGTTTGATGT 59.711 40.909 0.00 0.00 0.00 3.06
513 514 2.914861 TCGTGATTTGTGCGTTTGATG 58.085 42.857 0.00 0.00 0.00 3.07
514 515 3.491356 CATCGTGATTTGTGCGTTTGAT 58.509 40.909 0.00 0.00 0.00 2.57
515 516 2.914861 CATCGTGATTTGTGCGTTTGA 58.085 42.857 0.00 0.00 0.00 2.69
516 517 1.383080 GCATCGTGATTTGTGCGTTTG 59.617 47.619 0.00 0.00 0.00 2.93
517 518 1.266718 AGCATCGTGATTTGTGCGTTT 59.733 42.857 0.00 0.00 42.18 3.60
518 519 0.874390 AGCATCGTGATTTGTGCGTT 59.126 45.000 0.00 0.00 42.18 4.84
519 520 0.443869 GAGCATCGTGATTTGTGCGT 59.556 50.000 0.00 0.00 42.18 5.24
520 521 0.723414 AGAGCATCGTGATTTGTGCG 59.277 50.000 0.00 0.00 42.67 5.34
521 522 2.907910 AAGAGCATCGTGATTTGTGC 57.092 45.000 0.00 0.00 42.67 4.57
522 523 4.151258 ACAAAGAGCATCGTGATTTGTG 57.849 40.909 1.17 1.53 41.25 3.33
523 524 3.120546 CGACAAAGAGCATCGTGATTTGT 60.121 43.478 1.56 1.56 44.39 2.83
524 525 3.410850 CGACAAAGAGCATCGTGATTTG 58.589 45.455 0.00 0.00 42.67 2.32
525 526 2.416547 CCGACAAAGAGCATCGTGATTT 59.583 45.455 0.00 0.00 42.67 2.17
526 527 2.002586 CCGACAAAGAGCATCGTGATT 58.997 47.619 0.00 0.00 42.67 2.57
527 528 1.645034 CCGACAAAGAGCATCGTGAT 58.355 50.000 0.00 0.00 42.67 3.06
528 529 1.014044 GCCGACAAAGAGCATCGTGA 61.014 55.000 0.00 0.00 42.67 4.35
529 530 1.421485 GCCGACAAAGAGCATCGTG 59.579 57.895 0.00 0.00 42.67 4.35
530 531 1.741770 GGCCGACAAAGAGCATCGT 60.742 57.895 0.00 0.00 42.67 3.73
531 532 1.091771 ATGGCCGACAAAGAGCATCG 61.092 55.000 0.00 0.00 42.67 3.84
532 533 1.064654 GAATGGCCGACAAAGAGCATC 59.935 52.381 0.00 0.00 0.00 3.91
533 534 1.098050 GAATGGCCGACAAAGAGCAT 58.902 50.000 0.00 0.00 0.00 3.79
534 535 0.036732 AGAATGGCCGACAAAGAGCA 59.963 50.000 0.00 0.00 0.00 4.26
535 536 1.936547 CTAGAATGGCCGACAAAGAGC 59.063 52.381 0.00 0.00 0.00 4.09
536 537 2.555199 CCTAGAATGGCCGACAAAGAG 58.445 52.381 0.00 0.00 0.00 2.85
537 538 1.406887 GCCTAGAATGGCCGACAAAGA 60.407 52.381 0.00 0.00 46.82 2.52
538 539 1.017387 GCCTAGAATGGCCGACAAAG 58.983 55.000 0.00 0.00 46.82 2.77
539 540 3.168773 GCCTAGAATGGCCGACAAA 57.831 52.632 0.00 0.00 46.82 2.83
540 541 4.954933 GCCTAGAATGGCCGACAA 57.045 55.556 0.00 0.00 46.82 3.18
547 548 0.181350 GAGTGGTGGGCCTAGAATGG 59.819 60.000 4.53 0.00 35.27 3.16
548 549 0.181350 GGAGTGGTGGGCCTAGAATG 59.819 60.000 4.53 0.00 35.27 2.67
549 550 0.044855 AGGAGTGGTGGGCCTAGAAT 59.955 55.000 4.53 0.00 35.27 2.40
550 551 0.617820 GAGGAGTGGTGGGCCTAGAA 60.618 60.000 4.53 0.00 35.27 2.10
551 552 1.001760 GAGGAGTGGTGGGCCTAGA 59.998 63.158 4.53 0.00 35.27 2.43
552 553 0.909610 TTGAGGAGTGGTGGGCCTAG 60.910 60.000 4.53 0.00 35.27 3.02
553 554 0.253160 ATTGAGGAGTGGTGGGCCTA 60.253 55.000 4.53 0.00 35.27 3.93
554 555 1.542375 ATTGAGGAGTGGTGGGCCT 60.542 57.895 4.53 0.00 35.27 5.19
555 556 1.379044 CATTGAGGAGTGGTGGGCC 60.379 63.158 0.00 0.00 0.00 5.80
556 557 0.678048 GTCATTGAGGAGTGGTGGGC 60.678 60.000 0.00 0.00 0.00 5.36
557 558 0.692476 TGTCATTGAGGAGTGGTGGG 59.308 55.000 0.00 0.00 0.00 4.61
558 559 2.636830 GATGTCATTGAGGAGTGGTGG 58.363 52.381 0.00 0.00 0.00 4.61
559 560 2.238144 AGGATGTCATTGAGGAGTGGTG 59.762 50.000 0.00 0.00 0.00 4.17
560 561 2.555664 AGGATGTCATTGAGGAGTGGT 58.444 47.619 0.00 0.00 0.00 4.16
561 562 3.199508 AGAAGGATGTCATTGAGGAGTGG 59.800 47.826 0.00 0.00 0.00 4.00
562 563 4.081254 TCAGAAGGATGTCATTGAGGAGTG 60.081 45.833 0.00 0.00 0.00 3.51
563 564 4.099633 TCAGAAGGATGTCATTGAGGAGT 58.900 43.478 0.00 0.00 0.00 3.85
564 565 4.750021 TCAGAAGGATGTCATTGAGGAG 57.250 45.455 0.00 0.00 0.00 3.69
565 566 4.779489 TCTTCAGAAGGATGTCATTGAGGA 59.221 41.667 10.42 0.00 0.00 3.71
566 567 4.874966 GTCTTCAGAAGGATGTCATTGAGG 59.125 45.833 10.42 0.00 0.00 3.86
567 568 4.874966 GGTCTTCAGAAGGATGTCATTGAG 59.125 45.833 10.42 0.00 0.00 3.02
568 569 4.286808 TGGTCTTCAGAAGGATGTCATTGA 59.713 41.667 10.42 0.00 0.00 2.57
569 570 4.582869 TGGTCTTCAGAAGGATGTCATTG 58.417 43.478 10.42 0.00 0.00 2.82
570 571 4.916041 TGGTCTTCAGAAGGATGTCATT 57.084 40.909 10.42 0.00 0.00 2.57
571 572 4.472470 TGATGGTCTTCAGAAGGATGTCAT 59.528 41.667 10.42 7.18 0.00 3.06
572 573 3.840078 TGATGGTCTTCAGAAGGATGTCA 59.160 43.478 10.42 7.53 0.00 3.58
573 574 4.478206 TGATGGTCTTCAGAAGGATGTC 57.522 45.455 10.42 5.25 0.00 3.06
574 575 4.778579 CATGATGGTCTTCAGAAGGATGT 58.221 43.478 10.42 0.00 0.00 3.06
575 576 3.564644 GCATGATGGTCTTCAGAAGGATG 59.435 47.826 10.42 5.04 0.00 3.51
576 577 3.743584 CGCATGATGGTCTTCAGAAGGAT 60.744 47.826 10.42 0.65 0.00 3.24
577 578 2.419159 CGCATGATGGTCTTCAGAAGGA 60.419 50.000 10.42 0.00 0.00 3.36
578 579 1.938577 CGCATGATGGTCTTCAGAAGG 59.061 52.381 10.42 0.00 0.00 3.46
579 580 1.329906 GCGCATGATGGTCTTCAGAAG 59.670 52.381 0.30 3.45 0.00 2.85
580 581 1.372582 GCGCATGATGGTCTTCAGAA 58.627 50.000 0.30 0.00 0.00 3.02
581 582 0.462581 GGCGCATGATGGTCTTCAGA 60.463 55.000 10.83 0.00 0.00 3.27
582 583 1.769098 CGGCGCATGATGGTCTTCAG 61.769 60.000 10.83 0.00 0.00 3.02
583 584 1.815003 CGGCGCATGATGGTCTTCA 60.815 57.895 10.83 0.00 0.00 3.02
584 585 3.017323 CGGCGCATGATGGTCTTC 58.983 61.111 10.83 0.00 0.00 2.87
585 586 3.204827 GCGGCGCATGATGGTCTT 61.205 61.111 29.21 0.00 0.00 3.01
602 603 2.202878 ATGCCATTCGACGTCCCG 60.203 61.111 10.58 0.00 0.00 5.14
603 604 0.532862 ATCATGCCATTCGACGTCCC 60.533 55.000 10.58 0.00 0.00 4.46
604 605 2.061773 CTATCATGCCATTCGACGTCC 58.938 52.381 10.58 0.00 0.00 4.79
605 606 2.061773 CCTATCATGCCATTCGACGTC 58.938 52.381 5.18 5.18 0.00 4.34
606 607 1.686587 TCCTATCATGCCATTCGACGT 59.313 47.619 0.00 0.00 0.00 4.34
607 608 2.332104 CTCCTATCATGCCATTCGACG 58.668 52.381 0.00 0.00 0.00 5.12
608 609 2.300152 TCCTCCTATCATGCCATTCGAC 59.700 50.000 0.00 0.00 0.00 4.20
609 610 2.564504 CTCCTCCTATCATGCCATTCGA 59.435 50.000 0.00 0.00 0.00 3.71
610 611 2.301296 ACTCCTCCTATCATGCCATTCG 59.699 50.000 0.00 0.00 0.00 3.34
611 612 3.326006 TCACTCCTCCTATCATGCCATTC 59.674 47.826 0.00 0.00 0.00 2.67
612 613 3.321039 TCACTCCTCCTATCATGCCATT 58.679 45.455 0.00 0.00 0.00 3.16
613 614 2.981921 TCACTCCTCCTATCATGCCAT 58.018 47.619 0.00 0.00 0.00 4.40
614 615 2.477104 TCACTCCTCCTATCATGCCA 57.523 50.000 0.00 0.00 0.00 4.92
615 616 4.070716 CAATTCACTCCTCCTATCATGCC 58.929 47.826 0.00 0.00 0.00 4.40
616 617 3.501445 GCAATTCACTCCTCCTATCATGC 59.499 47.826 0.00 0.00 0.00 4.06
617 618 4.711399 TGCAATTCACTCCTCCTATCATG 58.289 43.478 0.00 0.00 0.00 3.07
618 619 5.378230 TTGCAATTCACTCCTCCTATCAT 57.622 39.130 0.00 0.00 0.00 2.45
619 620 4.842531 TTGCAATTCACTCCTCCTATCA 57.157 40.909 0.00 0.00 0.00 2.15
620 621 6.515272 TTTTTGCAATTCACTCCTCCTATC 57.485 37.500 0.00 0.00 0.00 2.08
930 970 2.863346 CGGTGACAACAGGGGACGA 61.863 63.158 0.00 0.00 0.00 4.20
1119 1217 2.886523 TGCTCCAAACCATTGTCTCAAG 59.113 45.455 0.00 0.00 34.60 3.02
1144 1243 6.708054 CAGTAATGAACCTCAGAACAAAGAGT 59.292 38.462 0.00 0.00 0.00 3.24
1180 1279 2.185867 GGTGCCACGATTCGCCTA 59.814 61.111 5.86 0.00 0.00 3.93
1190 1289 2.620251 TGCATCTATAGTGGTGCCAC 57.380 50.000 13.13 13.13 46.50 5.01
1251 1353 3.766691 CATGGGGCCAAGTGCAGC 61.767 66.667 4.39 0.00 43.89 5.25
1281 1383 1.264288 GTGTCCTTTCCTTCAAGTGCG 59.736 52.381 0.00 0.00 0.00 5.34
1285 1401 2.106511 TCCCAGTGTCCTTTCCTTCAAG 59.893 50.000 0.00 0.00 0.00 3.02
1358 1493 3.393278 ACCACTAACTACCACCAACACAT 59.607 43.478 0.00 0.00 0.00 3.21
1512 1719 8.188799 ACTGACATAATTTGATTCTTGCATCTG 58.811 33.333 0.00 0.00 0.00 2.90
1544 1884 9.897744 ACAGTACAAATCATGTTTCATTAACTG 57.102 29.630 0.00 0.00 43.63 3.16
1548 1888 9.283768 ACAGACAGTACAAATCATGTTTCATTA 57.716 29.630 0.00 0.00 43.63 1.90
1549 1889 8.169977 ACAGACAGTACAAATCATGTTTCATT 57.830 30.769 0.00 0.00 43.63 2.57
1550 1890 7.750229 ACAGACAGTACAAATCATGTTTCAT 57.250 32.000 0.00 0.00 43.63 2.57
1551 1891 8.147704 TCTACAGACAGTACAAATCATGTTTCA 58.852 33.333 0.00 0.00 43.63 2.69
1552 1892 8.534333 TCTACAGACAGTACAAATCATGTTTC 57.466 34.615 0.00 0.00 43.63 2.78
1553 1893 8.939929 CATCTACAGACAGTACAAATCATGTTT 58.060 33.333 0.00 0.00 43.63 2.83
1554 1894 7.550551 CCATCTACAGACAGTACAAATCATGTT 59.449 37.037 0.00 0.00 43.63 2.71
1555 1895 7.044181 CCATCTACAGACAGTACAAATCATGT 58.956 38.462 0.00 0.00 46.36 3.21
1556 1896 7.267857 TCCATCTACAGACAGTACAAATCATG 58.732 38.462 0.00 0.00 0.00 3.07
1557 1897 7.423844 TCCATCTACAGACAGTACAAATCAT 57.576 36.000 0.00 0.00 0.00 2.45
1558 1898 6.850752 TCCATCTACAGACAGTACAAATCA 57.149 37.500 0.00 0.00 0.00 2.57
1559 1899 6.256757 GCTTCCATCTACAGACAGTACAAATC 59.743 42.308 0.00 0.00 0.00 2.17
1560 1900 6.109359 GCTTCCATCTACAGACAGTACAAAT 58.891 40.000 0.00 0.00 0.00 2.32
1561 1901 5.011635 TGCTTCCATCTACAGACAGTACAAA 59.988 40.000 0.00 0.00 0.00 2.83
1562 1902 4.526650 TGCTTCCATCTACAGACAGTACAA 59.473 41.667 0.00 0.00 0.00 2.41
1563 1903 4.086457 TGCTTCCATCTACAGACAGTACA 58.914 43.478 0.00 0.00 0.00 2.90
1564 1904 4.720649 TGCTTCCATCTACAGACAGTAC 57.279 45.455 0.00 0.00 0.00 2.73
1565 1905 4.956075 TGATGCTTCCATCTACAGACAGTA 59.044 41.667 5.41 0.00 46.43 2.74
1566 1906 3.771479 TGATGCTTCCATCTACAGACAGT 59.229 43.478 5.41 0.00 46.43 3.55
1567 1907 4.397481 TGATGCTTCCATCTACAGACAG 57.603 45.455 5.41 0.00 46.43 3.51
1698 2078 7.033791 ACTACATTAGTTCATTCAGTACCACG 58.966 38.462 0.00 0.00 34.86 4.94
1757 2137 8.386606 TGCAAAATCACTGTTAAAAACATGTTC 58.613 29.630 12.39 0.00 41.26 3.18
2101 2590 2.241176 TGATCCCCAAGTGTATCCAACC 59.759 50.000 0.00 0.00 0.00 3.77
2195 2685 2.483491 CTGCTTCTGCTTGAACTCTTCC 59.517 50.000 0.00 0.00 40.48 3.46
2288 2778 1.064832 GCCAGCTTCTCCATCTCCTTT 60.065 52.381 0.00 0.00 0.00 3.11
2383 2873 2.900546 TCCCTCTCTTCCTTGAAGTCAC 59.099 50.000 3.95 0.00 40.24 3.67
2755 3408 3.236047 TCAGTGCTTTAGGTGGTGAGTA 58.764 45.455 0.00 0.00 0.00 2.59
2772 3425 5.836024 TCCACCCTAAACACTAAATCAGT 57.164 39.130 0.00 0.00 38.32 3.41
2773 3426 5.523916 CGATCCACCCTAAACACTAAATCAG 59.476 44.000 0.00 0.00 0.00 2.90
2775 3428 4.814771 CCGATCCACCCTAAACACTAAATC 59.185 45.833 0.00 0.00 0.00 2.17
2824 3477 4.814771 CCGATCCACCCTAAACACTAAATC 59.185 45.833 0.00 0.00 0.00 2.17
2832 3498 0.179054 GAGCCCGATCCACCCTAAAC 60.179 60.000 0.00 0.00 0.00 2.01
2868 3534 4.636206 CCACCCTAAAGACTAATTCAGTGC 59.364 45.833 0.00 0.00 37.72 4.40
2873 3587 5.298347 CCGATCCACCCTAAAGACTAATTC 58.702 45.833 0.00 0.00 0.00 2.17
2924 3697 4.527427 GCCCGATCTACCCTAAAGACTAAT 59.473 45.833 0.00 0.00 0.00 1.73
2966 3739 6.398918 TCCACTCTAAAGACTAATTCAGTGC 58.601 40.000 0.00 0.00 37.72 4.40
3358 4131 4.458829 TCGAGCCCGATCCACCCT 62.459 66.667 0.00 0.00 40.30 4.34
3370 4143 2.350484 GGTTTAGTTGGCTTTGTCGAGC 60.350 50.000 0.00 0.00 41.96 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.