Multiple sequence alignment - TraesCS4A01G423000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G423000 chr4A 100.000 2610 0 0 1 2610 693278815 693281424 0.000000e+00 4820.0
1 TraesCS4A01G423000 chr4A 88.312 77 5 3 9 81 220032037 220032113 3.580000e-14 89.8
2 TraesCS4A01G423000 chr4A 80.612 98 16 3 215 310 42777569 42777473 3.600000e-09 73.1
3 TraesCS4A01G423000 chr4A 84.375 64 10 0 404 467 63120681 63120744 2.170000e-06 63.9
4 TraesCS4A01G423000 chr7A 89.500 800 52 16 823 1610 33368250 33369029 0.000000e+00 983.0
5 TraesCS4A01G423000 chr7A 90.871 241 16 3 70 310 33365670 33365904 4.190000e-83 318.0
6 TraesCS4A01G423000 chr7A 88.889 243 27 0 2190 2432 33369897 33370139 1.520000e-77 300.0
7 TraesCS4A01G423000 chr7A 91.620 179 15 0 2430 2608 33370202 33370380 5.580000e-62 248.0
8 TraesCS4A01G423000 chr7A 84.713 157 15 5 686 834 33366118 33366273 5.820000e-32 148.0
9 TraesCS4A01G423000 chr7A 85.470 117 11 3 1833 1949 33369334 33369444 1.640000e-22 117.0
10 TraesCS4A01G423000 chr7D 91.111 630 37 11 1124 1735 33052167 33052795 0.000000e+00 835.0
11 TraesCS4A01G423000 chr7D 83.916 286 30 10 2325 2610 33053501 33053770 2.580000e-65 259.0
12 TraesCS4A01G423000 chr7D 82.787 244 17 10 827 1052 33051901 33052137 7.370000e-46 195.0
13 TraesCS4A01G423000 chr7D 92.105 76 4 2 9 82 330808199 330808124 3.550000e-19 106.0
14 TraesCS4A01G423000 chr1B 91.538 130 11 0 2481 2610 614293468 614293339 2.060000e-41 180.0
15 TraesCS4A01G423000 chr1B 93.939 66 3 1 9 73 497661612 497661677 5.940000e-17 99.0
16 TraesCS4A01G423000 chr1B 100.000 30 0 0 401 430 580214852 580214823 3.630000e-04 56.5
17 TraesCS4A01G423000 chr6D 94.203 69 3 1 9 76 178658885 178658953 1.280000e-18 104.0
18 TraesCS4A01G423000 chr6D 92.727 55 2 2 216 268 249959300 249959354 7.740000e-11 78.7
19 TraesCS4A01G423000 chr2B 94.203 69 3 1 9 76 796526588 796526520 1.280000e-18 104.0
20 TraesCS4A01G423000 chr5D 91.549 71 4 2 9 77 404190276 404190346 2.140000e-16 97.1
21 TraesCS4A01G423000 chr7B 92.424 66 4 1 9 73 1809535 1809600 2.770000e-15 93.5
22 TraesCS4A01G423000 chr2D 92.424 66 4 1 9 73 627553804 627553869 2.770000e-15 93.5
23 TraesCS4A01G423000 chr5B 90.141 71 6 1 9 78 306771173 306771103 9.950000e-15 91.6
24 TraesCS4A01G423000 chr3A 74.634 205 46 5 216 416 385525553 385525755 4.630000e-13 86.1
25 TraesCS4A01G423000 chr3A 85.526 76 8 2 222 295 589200434 589200360 2.790000e-10 76.8
26 TraesCS4A01G423000 chr6B 94.545 55 1 2 216 268 337859095 337859149 1.660000e-12 84.2
27 TraesCS4A01G423000 chr6A 94.545 55 1 2 216 268 346592028 346591974 1.660000e-12 84.2
28 TraesCS4A01G423000 chr3D 83.133 83 10 3 219 298 447575044 447574963 3.600000e-09 73.1
29 TraesCS4A01G423000 chr4D 79.592 98 17 3 215 310 421340073 421340169 1.680000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G423000 chr4A 693278815 693281424 2609 False 4820.000000 4820 100.0000 1 2610 1 chr4A.!!$F3 2609
1 TraesCS4A01G423000 chr7A 33365670 33370380 4710 False 352.333333 983 88.5105 70 2608 6 chr7A.!!$F1 2538
2 TraesCS4A01G423000 chr7D 33051901 33053770 1869 False 429.666667 835 85.9380 827 2610 3 chr7D.!!$F1 1783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 697 0.178964 TAAAAGCTGCAAGGCCTGGT 60.179 50.0 5.69 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 4453 0.179059 TCAGTCACAAGCCAGCGAAA 60.179 50.0 0.0 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.958506 GGAGAGAGTATAAGAGTGTTTAGAACA 58.041 37.037 0.00 0.00 39.52 3.18
47 48 9.672673 AGAACACTACTTTGTGATATAAATGCT 57.327 29.630 1.47 0.00 40.12 3.79
48 49 9.922305 GAACACTACTTTGTGATATAAATGCTC 57.078 33.333 1.47 0.00 40.12 4.26
49 50 9.672673 AACACTACTTTGTGATATAAATGCTCT 57.327 29.630 1.47 0.00 40.12 4.09
50 51 9.672673 ACACTACTTTGTGATATAAATGCTCTT 57.327 29.630 1.47 0.00 40.12 2.85
134 135 7.284074 TGTTTCTTGTAGACTAATGTTCCCAA 58.716 34.615 0.00 0.00 0.00 4.12
179 180 2.076863 ACTGAAAATCGTGTAGGCTGC 58.923 47.619 0.00 0.00 0.00 5.25
187 188 0.246635 CGTGTAGGCTGCAGTAACCT 59.753 55.000 16.64 15.56 37.61 3.50
189 190 2.094390 CGTGTAGGCTGCAGTAACCTAA 60.094 50.000 16.64 6.21 37.79 2.69
191 192 4.120589 GTGTAGGCTGCAGTAACCTAATC 58.879 47.826 16.64 9.86 37.79 1.75
256 257 8.593945 AAATAATTGAAGTTCTAGGATTGCCA 57.406 30.769 4.17 0.00 36.29 4.92
258 259 6.521151 AATTGAAGTTCTAGGATTGCCAAG 57.479 37.500 4.17 0.00 36.29 3.61
259 260 4.640771 TGAAGTTCTAGGATTGCCAAGT 57.359 40.909 4.17 0.00 36.29 3.16
260 261 4.579869 TGAAGTTCTAGGATTGCCAAGTC 58.420 43.478 4.17 0.00 36.29 3.01
261 262 4.041567 TGAAGTTCTAGGATTGCCAAGTCA 59.958 41.667 4.17 0.00 36.29 3.41
263 264 4.985538 AGTTCTAGGATTGCCAAGTCAAA 58.014 39.130 0.00 0.00 36.29 2.69
264 265 4.762251 AGTTCTAGGATTGCCAAGTCAAAC 59.238 41.667 0.00 0.00 36.29 2.93
265 266 4.640771 TCTAGGATTGCCAAGTCAAACT 57.359 40.909 0.00 0.00 36.29 2.66
266 267 4.985538 TCTAGGATTGCCAAGTCAAACTT 58.014 39.130 0.00 0.00 39.39 2.66
267 268 5.385198 TCTAGGATTGCCAAGTCAAACTTT 58.615 37.500 0.00 0.00 36.03 2.66
268 269 6.539173 TCTAGGATTGCCAAGTCAAACTTTA 58.461 36.000 0.00 0.00 36.03 1.85
269 270 7.001674 TCTAGGATTGCCAAGTCAAACTTTAA 58.998 34.615 0.00 0.00 36.03 1.52
288 289 8.221965 ACTTTAAAAAGTTTGACCCAGTCTAG 57.778 34.615 2.24 0.00 46.52 2.43
290 291 5.382664 AAAAAGTTTGACCCAGTCTAGGA 57.617 39.130 0.00 0.00 33.15 2.94
358 465 9.809096 TGAAAATATATTTCGCAGGCAATTTAA 57.191 25.926 11.08 0.00 0.00 1.52
376 483 4.696479 TTAATGGTGCAAATTGGGTGTT 57.304 36.364 6.21 0.00 0.00 3.32
377 484 2.547299 ATGGTGCAAATTGGGTGTTG 57.453 45.000 0.00 0.00 0.00 3.33
384 491 3.389925 CAAATTGGGTGTTGCAGATGT 57.610 42.857 0.00 0.00 0.00 3.06
386 493 4.128643 CAAATTGGGTGTTGCAGATGTTT 58.871 39.130 0.00 0.00 0.00 2.83
387 494 5.295950 CAAATTGGGTGTTGCAGATGTTTA 58.704 37.500 0.00 0.00 0.00 2.01
388 495 5.743636 AATTGGGTGTTGCAGATGTTTAT 57.256 34.783 0.00 0.00 0.00 1.40
389 496 6.849085 AATTGGGTGTTGCAGATGTTTATA 57.151 33.333 0.00 0.00 0.00 0.98
390 497 7.422465 AATTGGGTGTTGCAGATGTTTATAT 57.578 32.000 0.00 0.00 0.00 0.86
391 498 8.532186 AATTGGGTGTTGCAGATGTTTATATA 57.468 30.769 0.00 0.00 0.00 0.86
392 499 8.710749 ATTGGGTGTTGCAGATGTTTATATAT 57.289 30.769 0.00 0.00 0.00 0.86
393 500 8.532186 TTGGGTGTTGCAGATGTTTATATATT 57.468 30.769 0.00 0.00 0.00 1.28
394 501 7.939782 TGGGTGTTGCAGATGTTTATATATTG 58.060 34.615 0.00 0.00 0.00 1.90
395 502 7.559533 TGGGTGTTGCAGATGTTTATATATTGT 59.440 33.333 0.00 0.00 0.00 2.71
396 503 8.413229 GGGTGTTGCAGATGTTTATATATTGTT 58.587 33.333 0.00 0.00 0.00 2.83
397 504 9.236691 GGTGTTGCAGATGTTTATATATTGTTG 57.763 33.333 0.00 0.00 0.00 3.33
398 505 9.787532 GTGTTGCAGATGTTTATATATTGTTGT 57.212 29.630 0.00 0.00 0.00 3.32
442 549 8.762481 AATAAAGTTTGACCTAGGACAAAACT 57.238 30.769 31.80 27.23 40.19 2.66
443 550 9.856162 AATAAAGTTTGACCTAGGACAAAACTA 57.144 29.630 31.80 23.79 40.19 2.24
444 551 7.803279 AAAGTTTGACCTAGGACAAAACTAG 57.197 36.000 31.80 0.00 40.19 2.57
445 552 6.742559 AGTTTGACCTAGGACAAAACTAGA 57.257 37.500 31.80 13.64 40.19 2.43
446 553 6.760291 AGTTTGACCTAGGACAAAACTAGAG 58.240 40.000 31.80 0.00 40.19 2.43
447 554 4.803098 TGACCTAGGACAAAACTAGAGC 57.197 45.455 17.98 0.00 40.22 4.09
448 555 4.417437 TGACCTAGGACAAAACTAGAGCT 58.583 43.478 17.98 0.00 40.22 4.09
449 556 4.838986 TGACCTAGGACAAAACTAGAGCTT 59.161 41.667 17.98 0.00 40.22 3.74
450 557 5.047235 TGACCTAGGACAAAACTAGAGCTTC 60.047 44.000 17.98 0.00 40.22 3.86
451 558 4.838986 ACCTAGGACAAAACTAGAGCTTCA 59.161 41.667 17.98 0.00 40.22 3.02
452 559 5.307196 ACCTAGGACAAAACTAGAGCTTCAA 59.693 40.000 17.98 0.00 40.22 2.69
453 560 6.013293 ACCTAGGACAAAACTAGAGCTTCAAT 60.013 38.462 17.98 0.00 40.22 2.57
454 561 6.881602 CCTAGGACAAAACTAGAGCTTCAATT 59.118 38.462 1.05 0.00 40.22 2.32
455 562 8.041323 CCTAGGACAAAACTAGAGCTTCAATTA 58.959 37.037 1.05 0.00 40.22 1.40
456 563 9.606631 CTAGGACAAAACTAGAGCTTCAATTAT 57.393 33.333 0.00 0.00 40.22 1.28
457 564 8.870075 AGGACAAAACTAGAGCTTCAATTATT 57.130 30.769 0.00 0.00 0.00 1.40
458 565 9.301897 AGGACAAAACTAGAGCTTCAATTATTT 57.698 29.630 0.00 0.00 0.00 1.40
459 566 9.914131 GGACAAAACTAGAGCTTCAATTATTTT 57.086 29.630 0.00 0.00 0.00 1.82
465 572 9.612620 AACTAGAGCTTCAATTATTTTGAAACG 57.387 29.630 0.00 0.00 37.89 3.60
466 573 8.237267 ACTAGAGCTTCAATTATTTTGAAACGG 58.763 33.333 0.00 0.00 37.89 4.44
467 574 7.214467 AGAGCTTCAATTATTTTGAAACGGA 57.786 32.000 2.77 0.00 37.89 4.69
468 575 7.308435 AGAGCTTCAATTATTTTGAAACGGAG 58.692 34.615 2.77 0.00 37.89 4.63
469 576 6.389906 AGCTTCAATTATTTTGAAACGGAGG 58.610 36.000 2.77 0.00 37.89 4.30
470 577 5.576774 GCTTCAATTATTTTGAAACGGAGGG 59.423 40.000 2.77 0.00 37.89 4.30
471 578 6.571537 GCTTCAATTATTTTGAAACGGAGGGA 60.572 38.462 2.77 0.00 37.89 4.20
472 579 6.902771 TCAATTATTTTGAAACGGAGGGAA 57.097 33.333 0.00 0.00 0.00 3.97
473 580 6.683715 TCAATTATTTTGAAACGGAGGGAAC 58.316 36.000 0.00 0.00 0.00 3.62
474 581 6.265649 TCAATTATTTTGAAACGGAGGGAACA 59.734 34.615 0.00 0.00 0.00 3.18
475 582 6.658188 ATTATTTTGAAACGGAGGGAACAA 57.342 33.333 0.00 0.00 0.00 2.83
476 583 6.658188 TTATTTTGAAACGGAGGGAACAAT 57.342 33.333 0.00 0.00 0.00 2.71
477 584 5.545063 ATTTTGAAACGGAGGGAACAATT 57.455 34.783 0.00 0.00 0.00 2.32
478 585 5.346181 TTTTGAAACGGAGGGAACAATTT 57.654 34.783 0.00 0.00 0.00 1.82
479 586 5.346181 TTTGAAACGGAGGGAACAATTTT 57.654 34.783 0.00 0.00 0.00 1.82
480 587 5.346181 TTGAAACGGAGGGAACAATTTTT 57.654 34.783 0.00 0.00 0.00 1.94
481 588 6.466885 TTGAAACGGAGGGAACAATTTTTA 57.533 33.333 0.00 0.00 0.00 1.52
482 589 6.658188 TGAAACGGAGGGAACAATTTTTAT 57.342 33.333 0.00 0.00 0.00 1.40
483 590 7.056844 TGAAACGGAGGGAACAATTTTTATT 57.943 32.000 0.00 0.00 0.00 1.40
484 591 7.149307 TGAAACGGAGGGAACAATTTTTATTC 58.851 34.615 0.00 0.00 0.00 1.75
485 592 6.911250 AACGGAGGGAACAATTTTTATTCT 57.089 33.333 0.00 0.00 0.00 2.40
486 593 6.267496 ACGGAGGGAACAATTTTTATTCTG 57.733 37.500 0.00 0.00 0.00 3.02
487 594 6.007703 ACGGAGGGAACAATTTTTATTCTGA 58.992 36.000 0.00 0.00 0.00 3.27
488 595 6.663523 ACGGAGGGAACAATTTTTATTCTGAT 59.336 34.615 0.00 0.00 0.00 2.90
489 596 7.832187 ACGGAGGGAACAATTTTTATTCTGATA 59.168 33.333 0.00 0.00 0.00 2.15
490 597 8.129211 CGGAGGGAACAATTTTTATTCTGATAC 58.871 37.037 0.00 0.00 0.00 2.24
491 598 9.190317 GGAGGGAACAATTTTTATTCTGATACT 57.810 33.333 0.00 0.00 0.00 2.12
494 601 9.087424 GGGAACAATTTTTATTCTGATACTTGC 57.913 33.333 0.00 0.00 0.00 4.01
495 602 9.860898 GGAACAATTTTTATTCTGATACTTGCT 57.139 29.630 0.00 0.00 0.00 3.91
506 613 8.885494 ATTCTGATACTTGCTTCTATTCAGTC 57.115 34.615 0.00 0.00 0.00 3.51
507 614 7.410120 TCTGATACTTGCTTCTATTCAGTCA 57.590 36.000 0.00 0.00 0.00 3.41
508 615 8.016301 TCTGATACTTGCTTCTATTCAGTCAT 57.984 34.615 0.00 0.00 0.00 3.06
509 616 8.481314 TCTGATACTTGCTTCTATTCAGTCATT 58.519 33.333 0.00 0.00 0.00 2.57
510 617 9.107177 CTGATACTTGCTTCTATTCAGTCATTT 57.893 33.333 0.00 0.00 0.00 2.32
511 618 9.453572 TGATACTTGCTTCTATTCAGTCATTTT 57.546 29.630 0.00 0.00 0.00 1.82
512 619 9.713740 GATACTTGCTTCTATTCAGTCATTTTG 57.286 33.333 0.00 0.00 0.00 2.44
513 620 7.516198 ACTTGCTTCTATTCAGTCATTTTGT 57.484 32.000 0.00 0.00 0.00 2.83
514 621 7.945134 ACTTGCTTCTATTCAGTCATTTTGTT 58.055 30.769 0.00 0.00 0.00 2.83
515 622 8.078596 ACTTGCTTCTATTCAGTCATTTTGTTC 58.921 33.333 0.00 0.00 0.00 3.18
516 623 6.602179 TGCTTCTATTCAGTCATTTTGTTCG 58.398 36.000 0.00 0.00 0.00 3.95
517 624 6.024049 GCTTCTATTCAGTCATTTTGTTCGG 58.976 40.000 0.00 0.00 0.00 4.30
518 625 5.545658 TCTATTCAGTCATTTTGTTCGGC 57.454 39.130 0.00 0.00 0.00 5.54
519 626 5.245531 TCTATTCAGTCATTTTGTTCGGCT 58.754 37.500 0.00 0.00 0.00 5.52
520 627 4.853924 ATTCAGTCATTTTGTTCGGCTT 57.146 36.364 0.00 0.00 0.00 4.35
521 628 5.957842 ATTCAGTCATTTTGTTCGGCTTA 57.042 34.783 0.00 0.00 0.00 3.09
522 629 5.957842 TTCAGTCATTTTGTTCGGCTTAT 57.042 34.783 0.00 0.00 0.00 1.73
523 630 7.624360 ATTCAGTCATTTTGTTCGGCTTATA 57.376 32.000 0.00 0.00 0.00 0.98
524 631 6.417191 TCAGTCATTTTGTTCGGCTTATAC 57.583 37.500 0.00 0.00 0.00 1.47
525 632 5.935206 TCAGTCATTTTGTTCGGCTTATACA 59.065 36.000 0.00 0.00 0.00 2.29
526 633 6.428465 TCAGTCATTTTGTTCGGCTTATACAA 59.572 34.615 0.00 0.00 0.00 2.41
527 634 7.120579 TCAGTCATTTTGTTCGGCTTATACAAT 59.879 33.333 0.00 0.00 32.39 2.71
528 635 7.429340 CAGTCATTTTGTTCGGCTTATACAATC 59.571 37.037 0.00 0.00 32.39 2.67
529 636 7.336931 AGTCATTTTGTTCGGCTTATACAATCT 59.663 33.333 0.00 0.00 32.39 2.40
530 637 7.968405 GTCATTTTGTTCGGCTTATACAATCTT 59.032 33.333 0.00 0.00 32.39 2.40
531 638 8.519526 TCATTTTGTTCGGCTTATACAATCTTT 58.480 29.630 0.00 0.00 32.39 2.52
532 639 9.139174 CATTTTGTTCGGCTTATACAATCTTTT 57.861 29.630 0.00 0.00 32.39 2.27
533 640 9.705290 ATTTTGTTCGGCTTATACAATCTTTTT 57.295 25.926 0.00 0.00 32.39 1.94
565 672 6.623223 GTACAGTAAGTACGGTGTGATTTC 57.377 41.667 4.74 0.00 43.27 2.17
566 673 5.464030 ACAGTAAGTACGGTGTGATTTCT 57.536 39.130 0.00 0.00 33.44 2.52
567 674 5.850614 ACAGTAAGTACGGTGTGATTTCTT 58.149 37.500 0.00 0.00 33.44 2.52
568 675 5.694910 ACAGTAAGTACGGTGTGATTTCTTG 59.305 40.000 0.00 0.00 33.44 3.02
569 676 5.924254 CAGTAAGTACGGTGTGATTTCTTGA 59.076 40.000 0.00 0.00 0.00 3.02
570 677 6.422701 CAGTAAGTACGGTGTGATTTCTTGAA 59.577 38.462 0.00 0.00 0.00 2.69
571 678 7.117812 CAGTAAGTACGGTGTGATTTCTTGAAT 59.882 37.037 0.00 0.00 0.00 2.57
572 679 8.308931 AGTAAGTACGGTGTGATTTCTTGAATA 58.691 33.333 0.00 0.00 0.00 1.75
573 680 7.972832 AAGTACGGTGTGATTTCTTGAATAA 57.027 32.000 0.00 0.00 0.00 1.40
574 681 7.972832 AGTACGGTGTGATTTCTTGAATAAA 57.027 32.000 0.00 0.00 0.00 1.40
575 682 8.385898 AGTACGGTGTGATTTCTTGAATAAAA 57.614 30.769 0.00 0.00 0.00 1.52
576 683 8.504005 AGTACGGTGTGATTTCTTGAATAAAAG 58.496 33.333 0.00 0.00 0.00 2.27
577 684 6.149633 ACGGTGTGATTTCTTGAATAAAAGC 58.850 36.000 0.00 0.00 0.00 3.51
578 685 6.016276 ACGGTGTGATTTCTTGAATAAAAGCT 60.016 34.615 0.00 0.00 0.00 3.74
579 686 6.306356 CGGTGTGATTTCTTGAATAAAAGCTG 59.694 38.462 0.00 0.00 0.00 4.24
580 687 6.089954 GGTGTGATTTCTTGAATAAAAGCTGC 59.910 38.462 0.00 0.00 0.00 5.25
581 688 6.642131 GTGTGATTTCTTGAATAAAAGCTGCA 59.358 34.615 1.02 0.00 0.00 4.41
582 689 7.169645 GTGTGATTTCTTGAATAAAAGCTGCAA 59.830 33.333 1.02 0.00 0.00 4.08
583 690 7.383029 TGTGATTTCTTGAATAAAAGCTGCAAG 59.617 33.333 1.02 0.00 37.79 4.01
584 691 6.869913 TGATTTCTTGAATAAAAGCTGCAAGG 59.130 34.615 1.02 0.00 37.23 3.61
585 692 4.178545 TCTTGAATAAAAGCTGCAAGGC 57.821 40.909 1.02 0.00 37.23 4.35
586 693 3.056607 TCTTGAATAAAAGCTGCAAGGCC 60.057 43.478 1.02 0.00 37.23 5.19
587 694 2.528564 TGAATAAAAGCTGCAAGGCCT 58.471 42.857 0.00 0.00 0.00 5.19
588 695 2.231964 TGAATAAAAGCTGCAAGGCCTG 59.768 45.455 5.69 1.10 0.00 4.85
589 696 1.188863 ATAAAAGCTGCAAGGCCTGG 58.811 50.000 5.69 3.35 0.00 4.45
590 697 0.178964 TAAAAGCTGCAAGGCCTGGT 60.179 50.000 5.69 0.00 0.00 4.00
591 698 1.050421 AAAAGCTGCAAGGCCTGGTT 61.050 50.000 5.69 1.94 0.00 3.67
592 699 1.466851 AAAGCTGCAAGGCCTGGTTC 61.467 55.000 5.69 0.00 0.00 3.62
593 700 3.376918 GCTGCAAGGCCTGGTTCC 61.377 66.667 5.69 0.00 0.00 3.62
594 701 2.115910 CTGCAAGGCCTGGTTCCA 59.884 61.111 5.69 0.00 0.00 3.53
595 702 1.975407 CTGCAAGGCCTGGTTCCAG 60.975 63.158 5.69 11.52 0.00 3.86
596 703 2.416107 CTGCAAGGCCTGGTTCCAGA 62.416 60.000 19.12 0.00 36.24 3.86
597 704 1.000396 GCAAGGCCTGGTTCCAGAT 60.000 57.895 19.12 3.38 36.24 2.90
598 705 0.613012 GCAAGGCCTGGTTCCAGATT 60.613 55.000 19.12 8.74 36.24 2.40
599 706 1.928868 CAAGGCCTGGTTCCAGATTT 58.071 50.000 19.12 8.13 36.24 2.17
600 707 2.250924 CAAGGCCTGGTTCCAGATTTT 58.749 47.619 19.12 7.83 36.24 1.82
601 708 2.222227 AGGCCTGGTTCCAGATTTTC 57.778 50.000 19.12 5.03 36.24 2.29
602 709 0.811281 GGCCTGGTTCCAGATTTTCG 59.189 55.000 19.12 3.72 36.24 3.46
603 710 1.534729 GCCTGGTTCCAGATTTTCGT 58.465 50.000 19.12 0.00 36.24 3.85
604 711 1.886542 GCCTGGTTCCAGATTTTCGTT 59.113 47.619 19.12 0.00 36.24 3.85
605 712 3.078837 GCCTGGTTCCAGATTTTCGTTA 58.921 45.455 19.12 0.00 36.24 3.18
606 713 3.119955 GCCTGGTTCCAGATTTTCGTTAC 60.120 47.826 19.12 0.00 36.24 2.50
607 714 4.324267 CCTGGTTCCAGATTTTCGTTACT 58.676 43.478 19.12 0.00 36.24 2.24
608 715 4.392138 CCTGGTTCCAGATTTTCGTTACTC 59.608 45.833 19.12 0.00 36.24 2.59
609 716 3.991773 TGGTTCCAGATTTTCGTTACTCG 59.008 43.478 0.00 0.00 41.41 4.18
610 717 3.370061 GGTTCCAGATTTTCGTTACTCGG 59.630 47.826 0.00 0.00 40.32 4.63
611 718 3.947910 TCCAGATTTTCGTTACTCGGT 57.052 42.857 0.00 0.00 40.32 4.69
612 719 3.581755 TCCAGATTTTCGTTACTCGGTG 58.418 45.455 0.00 0.00 40.32 4.94
613 720 3.006110 TCCAGATTTTCGTTACTCGGTGT 59.994 43.478 0.00 0.00 40.32 4.16
614 721 3.744426 CCAGATTTTCGTTACTCGGTGTT 59.256 43.478 0.00 0.00 40.32 3.32
615 722 4.925054 CCAGATTTTCGTTACTCGGTGTTA 59.075 41.667 0.00 0.00 40.32 2.41
616 723 5.164022 CCAGATTTTCGTTACTCGGTGTTAC 60.164 44.000 0.00 0.00 40.32 2.50
617 724 4.925646 AGATTTTCGTTACTCGGTGTTACC 59.074 41.667 0.00 0.00 40.32 2.85
618 725 4.320608 TTTTCGTTACTCGGTGTTACCT 57.679 40.909 0.00 0.00 40.32 3.08
619 726 4.320608 TTTCGTTACTCGGTGTTACCTT 57.679 40.909 0.00 0.00 40.32 3.50
620 727 3.287312 TCGTTACTCGGTGTTACCTTG 57.713 47.619 0.00 0.00 40.32 3.61
621 728 2.030007 TCGTTACTCGGTGTTACCTTGG 60.030 50.000 0.00 0.00 40.32 3.61
622 729 2.030007 CGTTACTCGGTGTTACCTTGGA 60.030 50.000 0.00 0.00 35.66 3.53
623 730 3.582780 GTTACTCGGTGTTACCTTGGAG 58.417 50.000 0.00 0.00 35.66 3.86
624 731 1.713297 ACTCGGTGTTACCTTGGAGT 58.287 50.000 0.00 0.00 35.66 3.85
625 732 1.343465 ACTCGGTGTTACCTTGGAGTG 59.657 52.381 6.33 0.00 35.88 3.51
626 733 1.343465 CTCGGTGTTACCTTGGAGTGT 59.657 52.381 0.00 0.00 35.66 3.55
627 734 2.559668 CTCGGTGTTACCTTGGAGTGTA 59.440 50.000 0.00 0.00 35.66 2.90
628 735 3.167485 TCGGTGTTACCTTGGAGTGTAT 58.833 45.455 0.00 0.00 35.66 2.29
629 736 3.194116 TCGGTGTTACCTTGGAGTGTATC 59.806 47.826 0.00 0.00 35.66 2.24
630 737 3.056393 CGGTGTTACCTTGGAGTGTATCA 60.056 47.826 0.00 0.00 35.66 2.15
631 738 4.382685 CGGTGTTACCTTGGAGTGTATCAT 60.383 45.833 0.00 0.00 35.66 2.45
632 739 4.876107 GGTGTTACCTTGGAGTGTATCATG 59.124 45.833 0.00 0.00 34.73 3.07
633 740 5.338056 GGTGTTACCTTGGAGTGTATCATGA 60.338 44.000 0.00 0.00 34.73 3.07
634 741 5.581085 GTGTTACCTTGGAGTGTATCATGAC 59.419 44.000 0.00 0.00 0.00 3.06
635 742 5.483937 TGTTACCTTGGAGTGTATCATGACT 59.516 40.000 0.00 0.00 0.00 3.41
636 743 6.013725 TGTTACCTTGGAGTGTATCATGACTT 60.014 38.462 0.00 0.00 0.00 3.01
637 744 7.179516 TGTTACCTTGGAGTGTATCATGACTTA 59.820 37.037 0.00 0.00 0.00 2.24
638 745 6.620877 ACCTTGGAGTGTATCATGACTTAA 57.379 37.500 0.00 0.00 0.00 1.85
659 766 9.238368 ACTTAATAACTATACAAAAGGCAGCAA 57.762 29.630 0.00 0.00 0.00 3.91
672 779 2.036346 AGGCAGCAATTCCAACTCAAAC 59.964 45.455 0.00 0.00 0.00 2.93
679 786 5.360714 AGCAATTCCAACTCAAACAAGAAGA 59.639 36.000 0.00 0.00 0.00 2.87
680 787 6.042143 GCAATTCCAACTCAAACAAGAAGAA 58.958 36.000 0.00 0.00 0.00 2.52
681 788 6.199719 GCAATTCCAACTCAAACAAGAAGAAG 59.800 38.462 0.00 0.00 0.00 2.85
682 789 7.483307 CAATTCCAACTCAAACAAGAAGAAGA 58.517 34.615 0.00 0.00 0.00 2.87
683 790 7.645058 ATTCCAACTCAAACAAGAAGAAGAA 57.355 32.000 0.00 0.00 0.00 2.52
684 791 6.683974 TCCAACTCAAACAAGAAGAAGAAG 57.316 37.500 0.00 0.00 0.00 2.85
685 792 6.414732 TCCAACTCAAACAAGAAGAAGAAGA 58.585 36.000 0.00 0.00 0.00 2.87
686 793 6.884295 TCCAACTCAAACAAGAAGAAGAAGAA 59.116 34.615 0.00 0.00 0.00 2.52
687 794 7.066284 TCCAACTCAAACAAGAAGAAGAAGAAG 59.934 37.037 0.00 0.00 0.00 2.85
688 795 7.066284 CCAACTCAAACAAGAAGAAGAAGAAGA 59.934 37.037 0.00 0.00 0.00 2.87
689 796 8.454106 CAACTCAAACAAGAAGAAGAAGAAGAA 58.546 33.333 0.00 0.00 0.00 2.52
690 797 8.207521 ACTCAAACAAGAAGAAGAAGAAGAAG 57.792 34.615 0.00 0.00 0.00 2.85
691 798 8.043710 ACTCAAACAAGAAGAAGAAGAAGAAGA 58.956 33.333 0.00 0.00 0.00 2.87
692 799 8.792830 TCAAACAAGAAGAAGAAGAAGAAGAA 57.207 30.769 0.00 0.00 0.00 2.52
693 800 8.887717 TCAAACAAGAAGAAGAAGAAGAAGAAG 58.112 33.333 0.00 0.00 0.00 2.85
696 803 9.625747 AACAAGAAGAAGAAGAAGAAGAAGAAT 57.374 29.630 0.00 0.00 0.00 2.40
704 811 9.824534 GAAGAAGAAGAAGAAGAATAAGCAAAG 57.175 33.333 0.00 0.00 0.00 2.77
722 829 6.430451 AGCAAAGTCTAATCTTGTTTGTTCG 58.570 36.000 0.00 0.00 31.96 3.95
730 837 9.445786 GTCTAATCTTGTTTGTTCGAATTTTGA 57.554 29.630 0.00 0.00 0.00 2.69
762 869 3.559171 CGAATTCTGTTCCCAGGAAAGGA 60.559 47.826 0.00 0.00 39.31 3.36
779 894 5.932883 GGAAAGGAACTACATTCTCGACTTT 59.067 40.000 0.00 0.00 38.49 2.66
791 906 8.252964 ACATTCTCGACTTTATTTGAGGTAAC 57.747 34.615 0.00 0.00 0.00 2.50
792 907 6.939551 TTCTCGACTTTATTTGAGGTAACG 57.060 37.500 0.00 0.00 46.39 3.18
817 932 9.914923 CGAAAATATCTTGTCGAATTTGATACA 57.085 29.630 0.00 0.00 43.48 2.29
825 940 6.627395 TGTCGAATTTGATACAACCAAAGT 57.373 33.333 0.00 0.00 37.00 2.66
1011 3137 1.715585 CGACGCCATGGTAAGCAAG 59.284 57.895 14.67 0.00 0.00 4.01
1012 3138 0.739462 CGACGCCATGGTAAGCAAGA 60.739 55.000 14.67 0.00 0.00 3.02
1027 3153 0.332632 CAAGAAAGCCCCAGATCCCA 59.667 55.000 0.00 0.00 0.00 4.37
1034 3166 2.286425 CCCAGATCCCACCCACCT 60.286 66.667 0.00 0.00 0.00 4.00
1036 3168 2.735772 CCAGATCCCACCCACCTCG 61.736 68.421 0.00 0.00 0.00 4.63
1055 3187 1.038681 GTCCCCTCTCGTCCTCTTCC 61.039 65.000 0.00 0.00 0.00 3.46
1060 3192 0.551879 CTCTCGTCCTCTTCCCCCTA 59.448 60.000 0.00 0.00 0.00 3.53
1061 3193 0.258194 TCTCGTCCTCTTCCCCCTAC 59.742 60.000 0.00 0.00 0.00 3.18
1062 3194 0.756070 CTCGTCCTCTTCCCCCTACC 60.756 65.000 0.00 0.00 0.00 3.18
1063 3195 1.761271 CGTCCTCTTCCCCCTACCC 60.761 68.421 0.00 0.00 0.00 3.69
1064 3196 1.384222 GTCCTCTTCCCCCTACCCC 60.384 68.421 0.00 0.00 0.00 4.95
1065 3197 1.869946 TCCTCTTCCCCCTACCCCA 60.870 63.158 0.00 0.00 0.00 4.96
1066 3198 1.384643 CCTCTTCCCCCTACCCCAG 60.385 68.421 0.00 0.00 0.00 4.45
1067 3199 2.042261 TCTTCCCCCTACCCCAGC 59.958 66.667 0.00 0.00 0.00 4.85
1068 3200 3.480133 CTTCCCCCTACCCCAGCG 61.480 72.222 0.00 0.00 0.00 5.18
1069 3201 4.342086 TTCCCCCTACCCCAGCGT 62.342 66.667 0.00 0.00 0.00 5.07
1070 3202 3.876255 TTCCCCCTACCCCAGCGTT 62.876 63.158 0.00 0.00 0.00 4.84
1071 3203 3.793888 CCCCCTACCCCAGCGTTC 61.794 72.222 0.00 0.00 0.00 3.95
1072 3204 3.793888 CCCCTACCCCAGCGTTCC 61.794 72.222 0.00 0.00 0.00 3.62
1079 3211 4.367023 CCCAGCGTTCCGACCGAA 62.367 66.667 0.00 0.00 0.00 4.30
1097 3229 3.063588 CCGAAGCTCTAATTTCGTTTCCC 59.936 47.826 2.86 0.00 43.33 3.97
1099 3231 4.262617 GAAGCTCTAATTTCGTTTCCCCT 58.737 43.478 0.00 0.00 0.00 4.79
1103 3235 3.187112 TCTAATTTCGTTTCCCCTCCCT 58.813 45.455 0.00 0.00 0.00 4.20
1109 3241 1.331399 CGTTTCCCCTCCCTCTCTCC 61.331 65.000 0.00 0.00 0.00 3.71
1110 3242 0.983905 GTTTCCCCTCCCTCTCTCCC 60.984 65.000 0.00 0.00 0.00 4.30
1111 3243 2.196304 TTTCCCCTCCCTCTCTCCCC 62.196 65.000 0.00 0.00 0.00 4.81
1112 3244 4.179599 CCCCTCCCTCTCTCCCCC 62.180 77.778 0.00 0.00 0.00 5.40
1174 3306 0.698818 GGGACATCAAGGTGGAGGTT 59.301 55.000 0.00 0.00 31.00 3.50
1175 3307 1.075536 GGGACATCAAGGTGGAGGTTT 59.924 52.381 0.00 0.00 31.00 3.27
1176 3308 2.490902 GGGACATCAAGGTGGAGGTTTT 60.491 50.000 0.00 0.00 31.00 2.43
1210 3342 2.048503 CGGACGGCGGAGAACTTT 60.049 61.111 13.24 0.00 0.00 2.66
1211 3343 1.666872 CGGACGGCGGAGAACTTTT 60.667 57.895 13.24 0.00 0.00 2.27
1213 3345 1.799544 GGACGGCGGAGAACTTTTTA 58.200 50.000 13.24 0.00 0.00 1.52
1219 3351 1.468914 GCGGAGAACTTTTTAGCCCTG 59.531 52.381 0.00 0.00 0.00 4.45
1619 3751 4.957164 CCGGGTAGGCCTTTCTTC 57.043 61.111 12.58 0.00 34.45 2.87
1620 3752 2.297937 CCGGGTAGGCCTTTCTTCT 58.702 57.895 12.58 0.00 34.45 2.85
1621 3753 0.178301 CCGGGTAGGCCTTTCTTCTC 59.822 60.000 12.58 0.00 34.45 2.87
1624 3756 1.487142 GGGTAGGCCTTTCTTCTCTCC 59.513 57.143 12.58 0.00 34.45 3.71
1628 3760 1.203364 AGGCCTTTCTTCTCTCCTGGA 60.203 52.381 0.00 0.00 0.00 3.86
1636 3768 1.630126 TTCTCTCCTGGATGGCTGGC 61.630 60.000 0.00 0.00 35.26 4.85
1637 3769 3.092511 TCTCCTGGATGGCTGGCC 61.093 66.667 4.43 4.43 35.26 5.36
1638 3770 3.095163 CTCCTGGATGGCTGGCCT 61.095 66.667 13.05 0.00 36.94 5.19
1639 3771 3.414193 TCCTGGATGGCTGGCCTG 61.414 66.667 13.05 4.26 36.94 4.85
1640 3772 4.517934 CCTGGATGGCTGGCCTGG 62.518 72.222 12.06 1.66 37.01 4.45
1673 3816 3.244044 CCTCTGCTGCTAATCTAGGAACC 60.244 52.174 0.00 0.00 0.00 3.62
1678 3821 3.718815 CTGCTAATCTAGGAACCGGAAC 58.281 50.000 9.46 0.32 0.00 3.62
1680 3823 2.433239 GCTAATCTAGGAACCGGAACCA 59.567 50.000 9.46 1.40 0.00 3.67
1682 3825 4.624604 GCTAATCTAGGAACCGGAACCAAA 60.625 45.833 9.46 2.66 0.00 3.28
1686 3829 4.076394 TCTAGGAACCGGAACCAAATTTG 58.924 43.478 9.46 11.40 0.00 2.32
1703 3854 7.944061 CCAAATTTGGCTCTGTAATATCATCA 58.056 34.615 23.81 0.00 42.21 3.07
1708 3859 5.714047 TGGCTCTGTAATATCATCATCGTC 58.286 41.667 0.00 0.00 0.00 4.20
1729 3880 5.359009 CGTCTGGTTACCTGAATTCTACCTA 59.641 44.000 12.50 0.00 33.44 3.08
1730 3881 6.571605 GTCTGGTTACCTGAATTCTACCTAC 58.428 44.000 12.50 0.16 33.44 3.18
1731 3882 5.659971 TCTGGTTACCTGAATTCTACCTACC 59.340 44.000 8.55 9.30 0.00 3.18
1732 3883 5.596763 TGGTTACCTGAATTCTACCTACCT 58.403 41.667 7.05 0.00 0.00 3.08
1733 3884 5.424252 TGGTTACCTGAATTCTACCTACCTG 59.576 44.000 7.05 0.00 0.00 4.00
1734 3885 5.358090 GTTACCTGAATTCTACCTACCTGC 58.642 45.833 7.05 0.00 0.00 4.85
1735 3886 2.772515 ACCTGAATTCTACCTACCTGCC 59.227 50.000 7.05 0.00 0.00 4.85
1736 3887 3.041946 CCTGAATTCTACCTACCTGCCT 58.958 50.000 7.05 0.00 0.00 4.75
1737 3888 4.223953 CCTGAATTCTACCTACCTGCCTA 58.776 47.826 7.05 0.00 0.00 3.93
1740 3891 2.466547 TTCTACCTACCTGCCTACCC 57.533 55.000 0.00 0.00 0.00 3.69
1758 3909 0.524816 CCGCAAGAACATGATGCTGC 60.525 55.000 0.00 2.08 37.92 5.25
1760 3911 1.667212 CGCAAGAACATGATGCTGCTA 59.333 47.619 0.00 0.00 37.92 3.49
1761 3912 2.286242 CGCAAGAACATGATGCTGCTAG 60.286 50.000 0.00 0.00 37.92 3.42
1774 3934 3.096852 TGCTGCTAGTATACTGGTGTGT 58.903 45.455 15.90 0.00 0.00 3.72
1778 3938 5.720202 CTGCTAGTATACTGGTGTGTTGAA 58.280 41.667 15.90 0.00 0.00 2.69
1784 3944 6.946340 AGTATACTGGTGTGTTGAATGATGA 58.054 36.000 4.10 0.00 0.00 2.92
1793 3953 6.405065 GGTGTGTTGAATGATGATACTGCAAT 60.405 38.462 0.00 0.00 0.00 3.56
1794 3954 6.471198 GTGTGTTGAATGATGATACTGCAATG 59.529 38.462 0.00 0.00 0.00 2.82
1795 3955 5.457799 GTGTTGAATGATGATACTGCAATGC 59.542 40.000 0.00 0.00 0.00 3.56
1796 3956 5.125739 TGTTGAATGATGATACTGCAATGCA 59.874 36.000 7.99 7.99 36.92 3.96
1797 3957 5.838531 TGAATGATGATACTGCAATGCAA 57.161 34.783 9.92 0.00 38.41 4.08
1798 3958 5.827666 TGAATGATGATACTGCAATGCAAG 58.172 37.500 9.92 6.26 38.41 4.01
1799 3959 3.703286 TGATGATACTGCAATGCAAGC 57.297 42.857 9.92 7.49 38.41 4.01
1800 3960 2.032426 TGATGATACTGCAATGCAAGCG 59.968 45.455 9.92 0.00 38.41 4.68
1810 3970 2.155539 GCAATGCAAGCGTTTGGTTAAG 59.844 45.455 14.11 0.00 34.79 1.85
1813 3973 2.017782 TGCAAGCGTTTGGTTAAGTGA 58.982 42.857 14.11 0.00 34.79 3.41
1814 3974 2.423892 TGCAAGCGTTTGGTTAAGTGAA 59.576 40.909 14.11 0.00 34.79 3.18
1815 3975 3.067461 TGCAAGCGTTTGGTTAAGTGAAT 59.933 39.130 14.11 0.00 34.79 2.57
1817 3977 5.216648 GCAAGCGTTTGGTTAAGTGAATTA 58.783 37.500 14.11 0.00 34.79 1.40
1818 3978 5.688176 GCAAGCGTTTGGTTAAGTGAATTAA 59.312 36.000 14.11 0.00 34.79 1.40
1819 3979 6.129194 GCAAGCGTTTGGTTAAGTGAATTAAG 60.129 38.462 14.11 0.00 33.12 1.85
1825 3985 4.016113 GGTTAAGTGAATTAAGCTGCGG 57.984 45.455 7.26 0.00 44.73 5.69
1826 3986 3.181500 GGTTAAGTGAATTAAGCTGCGGG 60.181 47.826 7.26 0.00 44.73 6.13
1827 3987 2.489938 AAGTGAATTAAGCTGCGGGA 57.510 45.000 0.00 0.00 0.00 5.14
1828 3988 2.029838 AGTGAATTAAGCTGCGGGAG 57.970 50.000 0.00 0.00 0.00 4.30
1829 3989 1.017387 GTGAATTAAGCTGCGGGAGG 58.983 55.000 0.00 0.00 0.00 4.30
1830 3990 0.908910 TGAATTAAGCTGCGGGAGGA 59.091 50.000 0.00 0.00 0.00 3.71
1831 3991 1.490490 TGAATTAAGCTGCGGGAGGAT 59.510 47.619 0.00 0.00 0.00 3.24
1866 4100 8.087750 TGAATTTAGTTGCCTGAATTTTACCTG 58.912 33.333 0.00 0.00 37.11 4.00
1872 4106 2.170166 CCTGAATTTTACCTGCCTGCA 58.830 47.619 0.00 0.00 0.00 4.41
1873 4107 2.562298 CCTGAATTTTACCTGCCTGCAA 59.438 45.455 0.00 0.00 0.00 4.08
1874 4108 3.367703 CCTGAATTTTACCTGCCTGCAAG 60.368 47.826 0.00 0.00 0.00 4.01
1877 4111 3.942130 ATTTTACCTGCCTGCAAGAAC 57.058 42.857 0.00 0.00 34.07 3.01
1885 4119 2.030371 TGCCTGCAAGAACAACATGAA 58.970 42.857 0.00 0.00 34.07 2.57
1887 4121 2.796593 GCCTGCAAGAACAACATGAAAC 59.203 45.455 0.00 0.00 34.07 2.78
1896 4130 5.437060 AGAACAACATGAAACTGTACTGGT 58.563 37.500 0.00 0.00 0.00 4.00
1901 4135 8.547967 ACAACATGAAACTGTACTGGTTATAG 57.452 34.615 2.68 0.00 0.00 1.31
1923 4438 4.872691 AGTGACTGATTATACTGCTGCAAC 59.127 41.667 3.02 0.00 0.00 4.17
1933 4448 1.550072 ACTGCTGCAACTGTTTGGTTT 59.450 42.857 3.02 0.00 32.81 3.27
1934 4449 1.928503 CTGCTGCAACTGTTTGGTTTG 59.071 47.619 3.02 0.00 32.81 2.93
1935 4450 1.289276 GCTGCAACTGTTTGGTTTGG 58.711 50.000 0.00 0.00 32.81 3.28
1938 4453 1.620819 TGCAACTGTTTGGTTTGGTGT 59.379 42.857 0.00 0.00 32.81 4.16
1941 4456 3.124466 GCAACTGTTTGGTTTGGTGTTTC 59.876 43.478 0.00 0.00 32.81 2.78
1954 4470 0.317020 GTGTTTCGCTGGCTTGTGAC 60.317 55.000 0.00 0.00 0.00 3.67
1957 4473 0.179059 TTTCGCTGGCTTGTGACTGA 60.179 50.000 0.00 0.00 0.00 3.41
1960 4476 0.445436 CGCTGGCTTGTGACTGATTC 59.555 55.000 0.00 0.00 0.00 2.52
1971 4492 3.274288 GTGACTGATTCTTCATCCACCC 58.726 50.000 0.00 0.00 32.43 4.61
1995 4516 2.538737 CGAACACACACGATTTTGCTGT 60.539 45.455 0.00 0.00 0.00 4.40
2020 4541 7.646922 GTCATCAGCTCCAAAATTTACATGATC 59.353 37.037 0.00 0.00 0.00 2.92
2029 4550 9.098355 TCCAAAATTTACATGATCTAACTCTCG 57.902 33.333 0.00 0.00 0.00 4.04
2046 4622 4.116961 CTCTCGGAGTGTTTGTGTTTGTA 58.883 43.478 4.69 0.00 0.00 2.41
2063 4639 6.147328 GTGTTTGTAACCTGTTCTGATCTACC 59.853 42.308 0.00 0.00 0.00 3.18
2071 4647 1.100510 TTCTGATCTACCCCGTCGTG 58.899 55.000 0.00 0.00 0.00 4.35
2178 4789 1.472082 CCATTGTTGGTGCGATTGCTA 59.528 47.619 6.47 0.00 38.30 3.49
2181 4792 1.890876 TGTTGGTGCGATTGCTAGTT 58.109 45.000 6.47 0.00 43.34 2.24
2184 4795 1.890876 TGGTGCGATTGCTAGTTTGT 58.109 45.000 6.47 0.00 43.34 2.83
2185 4796 2.226330 TGGTGCGATTGCTAGTTTGTT 58.774 42.857 6.47 0.00 43.34 2.83
2187 4798 2.979813 GGTGCGATTGCTAGTTTGTTTG 59.020 45.455 6.47 0.00 43.34 2.93
2189 4800 3.664025 GTGCGATTGCTAGTTTGTTTGTC 59.336 43.478 6.47 0.00 43.34 3.18
2190 4801 3.313803 TGCGATTGCTAGTTTGTTTGTCA 59.686 39.130 6.47 0.00 43.34 3.58
2191 4802 3.908382 GCGATTGCTAGTTTGTTTGTCAG 59.092 43.478 0.00 0.00 38.39 3.51
2192 4803 4.319477 GCGATTGCTAGTTTGTTTGTCAGA 60.319 41.667 0.00 0.00 38.39 3.27
2264 4891 1.068352 AATACTGGGAGGGGATGGCC 61.068 60.000 0.00 0.00 0.00 5.36
2274 4901 0.468771 GGGGATGGCCTGGATTCAAG 60.469 60.000 3.32 0.00 0.00 3.02
2286 4913 2.749076 TGGATTCAAGCATCAGGTTTCG 59.251 45.455 0.00 0.00 32.07 3.46
2292 4919 3.994392 TCAAGCATCAGGTTTCGAGTAAC 59.006 43.478 0.00 0.00 32.07 2.50
2313 4940 3.118408 ACAGCGATCTAATTAAGCACCCA 60.118 43.478 0.00 0.00 0.00 4.51
2314 4941 3.876914 CAGCGATCTAATTAAGCACCCAA 59.123 43.478 0.00 0.00 0.00 4.12
2321 4948 6.757897 TCTAATTAAGCACCCAATCACTTG 57.242 37.500 0.00 0.00 0.00 3.16
2322 4949 3.874392 ATTAAGCACCCAATCACTTGC 57.126 42.857 0.00 0.00 35.08 4.01
2336 4963 3.873910 TCACTTGCAACTAATAGAGGGC 58.126 45.455 0.00 0.00 0.00 5.19
2354 4981 6.188407 AGAGGGCCTCTTTAAATAAGAAACC 58.812 40.000 30.46 0.00 37.60 3.27
2358 4985 7.184022 AGGGCCTCTTTAAATAAGAAACCTCTA 59.816 37.037 0.00 0.00 0.00 2.43
2395 5022 7.492344 GGCCCAATTGTTTTACAGATAATCTTG 59.508 37.037 4.43 0.00 0.00 3.02
2446 5150 5.278660 GGATGTGACTTGCAGATTTCTTTGT 60.279 40.000 0.00 0.00 29.35 2.83
2467 5171 2.425312 TCATCTCAGAAGGCTCTCGTTC 59.575 50.000 0.00 0.00 37.36 3.95
2471 5175 0.667487 CAGAAGGCTCTCGTTCGCAA 60.667 55.000 0.00 0.00 40.82 4.85
2480 5184 3.280775 CTCTCGTTCGCAAGTTTTTCAC 58.719 45.455 0.00 0.00 39.48 3.18
2533 5237 1.202687 TGTTGCTCACCAGGTTCTGAG 60.203 52.381 0.00 0.00 37.55 3.35
2586 5290 4.641989 CCAATTTAGCTCATAGGCACACTT 59.358 41.667 0.00 0.00 34.17 3.16
2587 5291 5.449588 CCAATTTAGCTCATAGGCACACTTG 60.450 44.000 0.00 0.00 34.17 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.958506 TGTTCTAAACACTCTTATACTCTCTCC 58.041 37.037 0.00 0.00 36.25 3.71
21 22 9.672673 AGCATTTATATCACAAAGTAGTGTTCT 57.327 29.630 0.00 0.00 40.37 3.01
22 23 9.922305 GAGCATTTATATCACAAAGTAGTGTTC 57.078 33.333 0.00 0.00 40.37 3.18
23 24 9.672673 AGAGCATTTATATCACAAAGTAGTGTT 57.327 29.630 0.00 0.00 40.37 3.32
24 25 9.672673 AAGAGCATTTATATCACAAAGTAGTGT 57.327 29.630 0.00 0.00 40.37 3.55
63 64 8.487028 CCTAGTGAACAAATAAATACTCCCTCT 58.513 37.037 0.00 0.00 0.00 3.69
64 65 7.226918 GCCTAGTGAACAAATAAATACTCCCTC 59.773 40.741 0.00 0.00 0.00 4.30
65 66 7.054751 GCCTAGTGAACAAATAAATACTCCCT 58.945 38.462 0.00 0.00 0.00 4.20
66 67 6.826741 TGCCTAGTGAACAAATAAATACTCCC 59.173 38.462 0.00 0.00 0.00 4.30
67 68 7.553044 ACTGCCTAGTGAACAAATAAATACTCC 59.447 37.037 0.00 0.00 35.34 3.85
68 69 8.494016 ACTGCCTAGTGAACAAATAAATACTC 57.506 34.615 0.00 0.00 35.34 2.59
117 118 5.416271 TCCTGTTGGGAACATTAGTCTAC 57.584 43.478 0.00 0.00 41.91 2.59
134 135 3.777106 TTCATCACTGAGCTTTCCTGT 57.223 42.857 0.00 0.00 31.68 4.00
162 163 2.076863 ACTGCAGCCTACACGATTTTC 58.923 47.619 15.27 0.00 0.00 2.29
166 167 1.134788 GGTTACTGCAGCCTACACGAT 60.135 52.381 15.27 0.00 0.00 3.73
263 264 7.284716 CCTAGACTGGGTCAAACTTTTTAAAGT 59.715 37.037 2.10 2.10 41.90 2.66
264 265 7.501225 TCCTAGACTGGGTCAAACTTTTTAAAG 59.499 37.037 4.57 0.80 37.24 1.85
265 266 7.348033 TCCTAGACTGGGTCAAACTTTTTAAA 58.652 34.615 4.57 0.00 34.60 1.52
266 267 6.902408 TCCTAGACTGGGTCAAACTTTTTAA 58.098 36.000 4.57 0.00 34.60 1.52
267 268 6.503560 TCCTAGACTGGGTCAAACTTTTTA 57.496 37.500 4.57 0.00 34.60 1.52
268 269 5.382664 TCCTAGACTGGGTCAAACTTTTT 57.617 39.130 4.57 0.00 34.60 1.94
269 270 5.382664 TTCCTAGACTGGGTCAAACTTTT 57.617 39.130 4.57 0.00 34.60 2.27
345 452 1.280066 GCACCATTAAATTGCCTGCG 58.720 50.000 0.00 0.00 0.00 5.18
347 454 5.392165 CCAATTTGCACCATTAAATTGCCTG 60.392 40.000 11.95 0.00 45.79 4.85
358 465 1.542987 GCAACACCCAATTTGCACCAT 60.543 47.619 1.51 0.00 46.13 3.55
416 523 9.856162 AGTTTTGTCCTAGGTCAAACTTTATTA 57.144 29.630 27.16 12.79 34.15 0.98
417 524 8.762481 AGTTTTGTCCTAGGTCAAACTTTATT 57.238 30.769 27.16 11.70 34.15 1.40
418 525 9.503399 CTAGTTTTGTCCTAGGTCAAACTTTAT 57.497 33.333 27.16 16.17 34.15 1.40
419 526 8.707449 TCTAGTTTTGTCCTAGGTCAAACTTTA 58.293 33.333 27.16 19.10 34.15 1.85
420 527 7.571025 TCTAGTTTTGTCCTAGGTCAAACTTT 58.429 34.615 27.16 19.03 34.15 2.66
421 528 7.133133 TCTAGTTTTGTCCTAGGTCAAACTT 57.867 36.000 27.16 20.90 34.15 2.66
422 529 6.741801 GCTCTAGTTTTGTCCTAGGTCAAACT 60.742 42.308 27.16 26.20 34.15 2.66
423 530 5.408909 GCTCTAGTTTTGTCCTAGGTCAAAC 59.591 44.000 27.16 22.18 34.15 2.93
424 531 5.307196 AGCTCTAGTTTTGTCCTAGGTCAAA 59.693 40.000 24.62 24.62 34.06 2.69
425 532 4.838986 AGCTCTAGTTTTGTCCTAGGTCAA 59.161 41.667 16.29 16.29 34.06 3.18
426 533 4.417437 AGCTCTAGTTTTGTCCTAGGTCA 58.583 43.478 9.08 6.65 34.06 4.02
427 534 5.047235 TGAAGCTCTAGTTTTGTCCTAGGTC 60.047 44.000 9.08 3.43 34.06 3.85
428 535 4.838986 TGAAGCTCTAGTTTTGTCCTAGGT 59.161 41.667 9.08 0.00 34.06 3.08
429 536 5.407407 TGAAGCTCTAGTTTTGTCCTAGG 57.593 43.478 0.82 0.82 34.06 3.02
430 537 7.913674 AATTGAAGCTCTAGTTTTGTCCTAG 57.086 36.000 0.00 0.00 34.47 3.02
431 538 9.959721 AATAATTGAAGCTCTAGTTTTGTCCTA 57.040 29.630 0.00 0.00 0.00 2.94
432 539 8.870075 AATAATTGAAGCTCTAGTTTTGTCCT 57.130 30.769 0.00 0.00 0.00 3.85
433 540 9.914131 AAAATAATTGAAGCTCTAGTTTTGTCC 57.086 29.630 0.00 0.00 0.00 4.02
439 546 9.612620 CGTTTCAAAATAATTGAAGCTCTAGTT 57.387 29.630 13.35 0.00 39.30 2.24
440 547 8.237267 CCGTTTCAAAATAATTGAAGCTCTAGT 58.763 33.333 13.35 0.00 39.30 2.57
441 548 8.450964 TCCGTTTCAAAATAATTGAAGCTCTAG 58.549 33.333 13.35 0.00 39.30 2.43
442 549 8.330466 TCCGTTTCAAAATAATTGAAGCTCTA 57.670 30.769 13.35 0.40 39.30 2.43
443 550 7.214467 TCCGTTTCAAAATAATTGAAGCTCT 57.786 32.000 13.35 0.00 39.30 4.09
444 551 6.528072 CCTCCGTTTCAAAATAATTGAAGCTC 59.472 38.462 13.35 5.19 39.30 4.09
445 552 6.389906 CCTCCGTTTCAAAATAATTGAAGCT 58.610 36.000 13.35 0.00 39.30 3.74
446 553 5.576774 CCCTCCGTTTCAAAATAATTGAAGC 59.423 40.000 7.45 7.45 39.30 3.86
447 554 6.919721 TCCCTCCGTTTCAAAATAATTGAAG 58.080 36.000 4.09 0.00 39.30 3.02
448 555 6.902771 TCCCTCCGTTTCAAAATAATTGAA 57.097 33.333 0.00 0.00 36.71 2.69
449 556 6.265649 TGTTCCCTCCGTTTCAAAATAATTGA 59.734 34.615 0.00 0.00 0.00 2.57
450 557 6.451393 TGTTCCCTCCGTTTCAAAATAATTG 58.549 36.000 0.00 0.00 0.00 2.32
451 558 6.658188 TGTTCCCTCCGTTTCAAAATAATT 57.342 33.333 0.00 0.00 0.00 1.40
452 559 6.658188 TTGTTCCCTCCGTTTCAAAATAAT 57.342 33.333 0.00 0.00 0.00 1.28
453 560 6.658188 ATTGTTCCCTCCGTTTCAAAATAA 57.342 33.333 0.00 0.00 0.00 1.40
454 561 6.658188 AATTGTTCCCTCCGTTTCAAAATA 57.342 33.333 0.00 0.00 0.00 1.40
455 562 5.545063 AATTGTTCCCTCCGTTTCAAAAT 57.455 34.783 0.00 0.00 0.00 1.82
456 563 5.346181 AAATTGTTCCCTCCGTTTCAAAA 57.654 34.783 0.00 0.00 0.00 2.44
457 564 5.346181 AAAATTGTTCCCTCCGTTTCAAA 57.654 34.783 0.00 0.00 0.00 2.69
458 565 5.346181 AAAAATTGTTCCCTCCGTTTCAA 57.654 34.783 0.00 0.00 0.00 2.69
459 566 6.658188 ATAAAAATTGTTCCCTCCGTTTCA 57.342 33.333 0.00 0.00 0.00 2.69
460 567 7.328493 CAGAATAAAAATTGTTCCCTCCGTTTC 59.672 37.037 0.00 0.00 31.92 2.78
461 568 7.014808 TCAGAATAAAAATTGTTCCCTCCGTTT 59.985 33.333 0.00 0.00 31.92 3.60
462 569 6.492087 TCAGAATAAAAATTGTTCCCTCCGTT 59.508 34.615 0.00 0.00 31.92 4.44
463 570 6.007703 TCAGAATAAAAATTGTTCCCTCCGT 58.992 36.000 0.00 0.00 31.92 4.69
464 571 6.509418 TCAGAATAAAAATTGTTCCCTCCG 57.491 37.500 0.00 0.00 31.92 4.63
465 572 9.190317 AGTATCAGAATAAAAATTGTTCCCTCC 57.810 33.333 0.00 0.00 31.92 4.30
468 575 9.087424 GCAAGTATCAGAATAAAAATTGTTCCC 57.913 33.333 0.00 0.00 31.92 3.97
469 576 9.860898 AGCAAGTATCAGAATAAAAATTGTTCC 57.139 29.630 0.00 0.00 31.92 3.62
480 587 9.973450 GACTGAATAGAAGCAAGTATCAGAATA 57.027 33.333 6.86 0.00 0.00 1.75
481 588 8.481314 TGACTGAATAGAAGCAAGTATCAGAAT 58.519 33.333 6.86 0.00 0.00 2.40
482 589 7.840931 TGACTGAATAGAAGCAAGTATCAGAA 58.159 34.615 6.86 0.00 0.00 3.02
483 590 7.410120 TGACTGAATAGAAGCAAGTATCAGA 57.590 36.000 6.86 0.00 0.00 3.27
484 591 8.659925 AATGACTGAATAGAAGCAAGTATCAG 57.340 34.615 0.00 0.00 0.00 2.90
485 592 9.453572 AAAATGACTGAATAGAAGCAAGTATCA 57.546 29.630 0.00 0.00 0.00 2.15
486 593 9.713740 CAAAATGACTGAATAGAAGCAAGTATC 57.286 33.333 0.00 0.00 0.00 2.24
487 594 9.236006 ACAAAATGACTGAATAGAAGCAAGTAT 57.764 29.630 0.00 0.00 0.00 2.12
488 595 8.621532 ACAAAATGACTGAATAGAAGCAAGTA 57.378 30.769 0.00 0.00 0.00 2.24
489 596 7.516198 ACAAAATGACTGAATAGAAGCAAGT 57.484 32.000 0.00 0.00 0.00 3.16
490 597 7.269937 CGAACAAAATGACTGAATAGAAGCAAG 59.730 37.037 0.00 0.00 0.00 4.01
491 598 7.077605 CGAACAAAATGACTGAATAGAAGCAA 58.922 34.615 0.00 0.00 0.00 3.91
492 599 6.348458 CCGAACAAAATGACTGAATAGAAGCA 60.348 38.462 0.00 0.00 0.00 3.91
493 600 6.024049 CCGAACAAAATGACTGAATAGAAGC 58.976 40.000 0.00 0.00 0.00 3.86
494 601 6.024049 GCCGAACAAAATGACTGAATAGAAG 58.976 40.000 0.00 0.00 0.00 2.85
495 602 5.705441 AGCCGAACAAAATGACTGAATAGAA 59.295 36.000 0.00 0.00 0.00 2.10
496 603 5.245531 AGCCGAACAAAATGACTGAATAGA 58.754 37.500 0.00 0.00 0.00 1.98
497 604 5.551760 AGCCGAACAAAATGACTGAATAG 57.448 39.130 0.00 0.00 0.00 1.73
498 605 5.957842 AAGCCGAACAAAATGACTGAATA 57.042 34.783 0.00 0.00 0.00 1.75
499 606 4.853924 AAGCCGAACAAAATGACTGAAT 57.146 36.364 0.00 0.00 0.00 2.57
500 607 5.957842 ATAAGCCGAACAAAATGACTGAA 57.042 34.783 0.00 0.00 0.00 3.02
501 608 5.935206 TGTATAAGCCGAACAAAATGACTGA 59.065 36.000 0.00 0.00 0.00 3.41
502 609 6.176975 TGTATAAGCCGAACAAAATGACTG 57.823 37.500 0.00 0.00 0.00 3.51
503 610 6.811253 TTGTATAAGCCGAACAAAATGACT 57.189 33.333 0.00 0.00 30.54 3.41
504 611 7.472543 AGATTGTATAAGCCGAACAAAATGAC 58.527 34.615 0.00 0.00 36.75 3.06
505 612 7.624360 AGATTGTATAAGCCGAACAAAATGA 57.376 32.000 0.00 0.00 36.75 2.57
506 613 8.687824 AAAGATTGTATAAGCCGAACAAAATG 57.312 30.769 0.00 0.00 36.75 2.32
507 614 9.705290 AAAAAGATTGTATAAGCCGAACAAAAT 57.295 25.926 0.00 0.00 36.75 1.82
532 639 5.523188 CCGTACTTACTGTACCACACAAAAA 59.477 40.000 0.00 0.00 46.49 1.94
533 640 5.049167 CCGTACTTACTGTACCACACAAAA 58.951 41.667 0.00 0.00 46.49 2.44
534 641 4.099266 ACCGTACTTACTGTACCACACAAA 59.901 41.667 0.00 0.00 46.49 2.83
535 642 3.636300 ACCGTACTTACTGTACCACACAA 59.364 43.478 0.00 0.00 46.49 3.33
536 643 3.004629 CACCGTACTTACTGTACCACACA 59.995 47.826 0.00 0.00 46.49 3.72
537 644 3.004734 ACACCGTACTTACTGTACCACAC 59.995 47.826 0.00 0.00 46.49 3.82
538 645 3.004629 CACACCGTACTTACTGTACCACA 59.995 47.826 0.00 0.00 46.49 4.17
539 646 3.253188 TCACACCGTACTTACTGTACCAC 59.747 47.826 0.00 0.00 46.49 4.16
540 647 3.485394 TCACACCGTACTTACTGTACCA 58.515 45.455 0.00 0.00 46.49 3.25
541 648 4.708726 ATCACACCGTACTTACTGTACC 57.291 45.455 0.00 0.00 46.49 3.34
542 649 6.385033 AGAAATCACACCGTACTTACTGTAC 58.615 40.000 0.00 0.00 45.93 2.90
543 650 6.579666 AGAAATCACACCGTACTTACTGTA 57.420 37.500 0.00 0.00 0.00 2.74
544 651 5.464030 AGAAATCACACCGTACTTACTGT 57.536 39.130 0.00 0.00 0.00 3.55
545 652 5.924254 TCAAGAAATCACACCGTACTTACTG 59.076 40.000 0.00 0.00 0.00 2.74
546 653 6.092955 TCAAGAAATCACACCGTACTTACT 57.907 37.500 0.00 0.00 0.00 2.24
547 654 6.774354 TTCAAGAAATCACACCGTACTTAC 57.226 37.500 0.00 0.00 0.00 2.34
548 655 9.491675 TTTATTCAAGAAATCACACCGTACTTA 57.508 29.630 0.00 0.00 0.00 2.24
549 656 7.972832 TTATTCAAGAAATCACACCGTACTT 57.027 32.000 0.00 0.00 0.00 2.24
550 657 7.972832 TTTATTCAAGAAATCACACCGTACT 57.027 32.000 0.00 0.00 0.00 2.73
551 658 7.270579 GCTTTTATTCAAGAAATCACACCGTAC 59.729 37.037 0.00 0.00 0.00 3.67
552 659 7.174253 AGCTTTTATTCAAGAAATCACACCGTA 59.826 33.333 0.00 0.00 0.00 4.02
553 660 6.016276 AGCTTTTATTCAAGAAATCACACCGT 60.016 34.615 0.00 0.00 0.00 4.83
554 661 6.306356 CAGCTTTTATTCAAGAAATCACACCG 59.694 38.462 0.00 0.00 0.00 4.94
555 662 6.089954 GCAGCTTTTATTCAAGAAATCACACC 59.910 38.462 0.00 0.00 0.00 4.16
556 663 6.642131 TGCAGCTTTTATTCAAGAAATCACAC 59.358 34.615 0.00 0.00 0.00 3.82
557 664 6.747125 TGCAGCTTTTATTCAAGAAATCACA 58.253 32.000 0.00 0.00 0.00 3.58
558 665 7.148689 CCTTGCAGCTTTTATTCAAGAAATCAC 60.149 37.037 0.00 0.00 37.03 3.06
559 666 6.869913 CCTTGCAGCTTTTATTCAAGAAATCA 59.130 34.615 0.00 0.00 37.03 2.57
560 667 6.183360 GCCTTGCAGCTTTTATTCAAGAAATC 60.183 38.462 0.00 0.00 37.03 2.17
561 668 5.640783 GCCTTGCAGCTTTTATTCAAGAAAT 59.359 36.000 0.00 0.00 37.03 2.17
562 669 4.990426 GCCTTGCAGCTTTTATTCAAGAAA 59.010 37.500 0.00 0.00 37.03 2.52
563 670 4.559153 GCCTTGCAGCTTTTATTCAAGAA 58.441 39.130 0.00 0.00 37.03 2.52
564 671 3.056607 GGCCTTGCAGCTTTTATTCAAGA 60.057 43.478 0.00 0.00 37.03 3.02
565 672 3.056322 AGGCCTTGCAGCTTTTATTCAAG 60.056 43.478 0.00 0.00 35.26 3.02
566 673 2.899256 AGGCCTTGCAGCTTTTATTCAA 59.101 40.909 0.00 0.00 0.00 2.69
567 674 2.231964 CAGGCCTTGCAGCTTTTATTCA 59.768 45.455 0.00 0.00 0.00 2.57
568 675 2.417787 CCAGGCCTTGCAGCTTTTATTC 60.418 50.000 0.00 0.00 0.00 1.75
569 676 1.551883 CCAGGCCTTGCAGCTTTTATT 59.448 47.619 0.00 0.00 0.00 1.40
570 677 1.188863 CCAGGCCTTGCAGCTTTTAT 58.811 50.000 0.00 0.00 0.00 1.40
571 678 0.178964 ACCAGGCCTTGCAGCTTTTA 60.179 50.000 0.00 0.00 0.00 1.52
572 679 1.050421 AACCAGGCCTTGCAGCTTTT 61.050 50.000 0.00 0.00 0.00 2.27
573 680 1.458209 AACCAGGCCTTGCAGCTTT 60.458 52.632 0.00 0.00 0.00 3.51
574 681 1.905354 GAACCAGGCCTTGCAGCTT 60.905 57.895 0.00 0.00 0.00 3.74
575 682 2.282745 GAACCAGGCCTTGCAGCT 60.283 61.111 0.00 0.00 0.00 4.24
576 683 3.376918 GGAACCAGGCCTTGCAGC 61.377 66.667 0.00 0.00 0.00 5.25
577 684 1.975407 CTGGAACCAGGCCTTGCAG 60.975 63.158 0.00 6.23 40.17 4.41
578 685 1.792757 ATCTGGAACCAGGCCTTGCA 61.793 55.000 18.99 0.00 43.75 4.08
579 686 0.613012 AATCTGGAACCAGGCCTTGC 60.613 55.000 18.99 0.00 43.75 4.01
580 687 1.928868 AAATCTGGAACCAGGCCTTG 58.071 50.000 18.99 0.68 43.75 3.61
581 688 2.529632 GAAAATCTGGAACCAGGCCTT 58.470 47.619 18.99 10.38 43.75 4.35
582 689 1.614317 CGAAAATCTGGAACCAGGCCT 60.614 52.381 18.99 0.00 43.75 5.19
583 690 0.811281 CGAAAATCTGGAACCAGGCC 59.189 55.000 18.99 0.00 43.75 5.19
584 691 1.534729 ACGAAAATCTGGAACCAGGC 58.465 50.000 18.99 5.20 43.75 4.85
585 692 4.324267 AGTAACGAAAATCTGGAACCAGG 58.676 43.478 18.99 6.10 43.75 4.45
586 693 4.091509 CGAGTAACGAAAATCTGGAACCAG 59.908 45.833 14.01 14.01 45.77 4.00
587 694 3.991773 CGAGTAACGAAAATCTGGAACCA 59.008 43.478 0.00 0.00 45.77 3.67
588 695 3.370061 CCGAGTAACGAAAATCTGGAACC 59.630 47.826 0.00 0.00 45.77 3.62
589 696 3.992427 ACCGAGTAACGAAAATCTGGAAC 59.008 43.478 0.00 0.00 45.77 3.62
590 697 3.991773 CACCGAGTAACGAAAATCTGGAA 59.008 43.478 0.00 0.00 45.77 3.53
591 698 3.006110 ACACCGAGTAACGAAAATCTGGA 59.994 43.478 0.00 0.00 45.77 3.86
592 699 3.323243 ACACCGAGTAACGAAAATCTGG 58.677 45.455 0.00 0.00 45.77 3.86
593 700 4.985044 AACACCGAGTAACGAAAATCTG 57.015 40.909 0.00 0.00 45.77 2.90
594 701 4.925646 GGTAACACCGAGTAACGAAAATCT 59.074 41.667 0.00 0.00 45.77 2.40
595 702 4.925646 AGGTAACACCGAGTAACGAAAATC 59.074 41.667 0.00 0.00 44.90 2.17
596 703 4.886579 AGGTAACACCGAGTAACGAAAAT 58.113 39.130 0.00 0.00 44.90 1.82
597 704 4.320608 AGGTAACACCGAGTAACGAAAA 57.679 40.909 0.00 0.00 44.90 2.29
598 705 4.050553 CAAGGTAACACCGAGTAACGAAA 58.949 43.478 0.00 0.00 44.90 3.46
599 706 3.552684 CCAAGGTAACACCGAGTAACGAA 60.553 47.826 0.00 0.00 44.90 3.85
600 707 2.030007 CCAAGGTAACACCGAGTAACGA 60.030 50.000 0.00 0.00 44.90 3.85
601 708 2.030007 TCCAAGGTAACACCGAGTAACG 60.030 50.000 0.00 0.00 44.90 3.18
602 709 3.006217 ACTCCAAGGTAACACCGAGTAAC 59.994 47.826 3.45 0.00 44.90 2.50
603 710 3.006110 CACTCCAAGGTAACACCGAGTAA 59.994 47.826 4.67 0.00 44.90 2.24
604 711 2.559668 CACTCCAAGGTAACACCGAGTA 59.440 50.000 4.67 0.00 44.90 2.59
605 712 1.343465 CACTCCAAGGTAACACCGAGT 59.657 52.381 0.00 0.24 44.90 4.18
606 713 1.343465 ACACTCCAAGGTAACACCGAG 59.657 52.381 0.00 0.00 44.90 4.63
607 714 1.416243 ACACTCCAAGGTAACACCGA 58.584 50.000 0.00 0.00 44.90 4.69
608 715 3.056393 TGATACACTCCAAGGTAACACCG 60.056 47.826 0.00 0.00 44.90 4.94
609 716 4.546829 TGATACACTCCAAGGTAACACC 57.453 45.455 0.00 0.00 38.99 4.16
610 717 5.581085 GTCATGATACACTCCAAGGTAACAC 59.419 44.000 0.00 0.00 41.41 3.32
611 718 5.483937 AGTCATGATACACTCCAAGGTAACA 59.516 40.000 0.00 0.00 41.41 2.41
612 719 5.978814 AGTCATGATACACTCCAAGGTAAC 58.021 41.667 0.00 0.00 0.00 2.50
613 720 6.620877 AAGTCATGATACACTCCAAGGTAA 57.379 37.500 0.00 0.00 0.00 2.85
614 721 7.727578 TTAAGTCATGATACACTCCAAGGTA 57.272 36.000 0.00 0.00 0.00 3.08
615 722 6.620877 TTAAGTCATGATACACTCCAAGGT 57.379 37.500 0.00 0.00 0.00 3.50
616 723 9.046296 GTTATTAAGTCATGATACACTCCAAGG 57.954 37.037 0.00 0.00 0.00 3.61
617 724 9.823647 AGTTATTAAGTCATGATACACTCCAAG 57.176 33.333 0.00 0.00 0.00 3.61
631 738 8.889717 GCTGCCTTTTGTATAGTTATTAAGTCA 58.110 33.333 0.00 0.00 0.00 3.41
632 739 8.889717 TGCTGCCTTTTGTATAGTTATTAAGTC 58.110 33.333 0.00 0.00 0.00 3.01
633 740 8.801882 TGCTGCCTTTTGTATAGTTATTAAGT 57.198 30.769 0.00 0.00 0.00 2.24
637 744 8.197439 GGAATTGCTGCCTTTTGTATAGTTATT 58.803 33.333 0.00 0.00 0.00 1.40
638 745 7.341769 TGGAATTGCTGCCTTTTGTATAGTTAT 59.658 33.333 0.00 0.00 0.00 1.89
645 752 3.640967 AGTTGGAATTGCTGCCTTTTGTA 59.359 39.130 0.00 0.00 0.00 2.41
659 766 7.557719 TCTTCTTCTTCTTGTTTGAGTTGGAAT 59.442 33.333 0.00 0.00 0.00 3.01
679 786 9.348476 ACTTTGCTTATTCTTCTTCTTCTTCTT 57.652 29.630 0.00 0.00 0.00 2.52
680 787 8.916628 ACTTTGCTTATTCTTCTTCTTCTTCT 57.083 30.769 0.00 0.00 0.00 2.85
681 788 8.998377 AGACTTTGCTTATTCTTCTTCTTCTTC 58.002 33.333 0.00 0.00 0.00 2.87
682 789 8.916628 AGACTTTGCTTATTCTTCTTCTTCTT 57.083 30.769 0.00 0.00 0.00 2.52
689 796 9.732130 ACAAGATTAGACTTTGCTTATTCTTCT 57.268 29.630 0.00 0.00 0.00 2.85
693 800 9.899226 ACAAACAAGATTAGACTTTGCTTATTC 57.101 29.630 0.00 0.00 0.00 1.75
696 803 8.067784 CGAACAAACAAGATTAGACTTTGCTTA 58.932 33.333 0.00 0.00 0.00 3.09
704 811 9.445786 TCAAAATTCGAACAAACAAGATTAGAC 57.554 29.630 0.00 0.00 0.00 2.59
722 829 9.455847 CAGAATTCGAATATTCCCTCAAAATTC 57.544 33.333 11.83 13.25 35.56 2.17
730 837 5.377478 GGGAACAGAATTCGAATATTCCCT 58.623 41.667 31.53 13.68 46.92 4.20
762 869 8.095169 ACCTCAAATAAAGTCGAGAATGTAGTT 58.905 33.333 0.00 0.00 0.00 2.24
766 881 7.063074 CGTTACCTCAAATAAAGTCGAGAATGT 59.937 37.037 0.00 0.00 0.00 2.71
767 882 7.274904 TCGTTACCTCAAATAAAGTCGAGAATG 59.725 37.037 0.00 0.00 0.00 2.67
770 885 6.258230 TCGTTACCTCAAATAAAGTCGAGA 57.742 37.500 0.00 0.00 0.00 4.04
791 906 9.914923 TGTATCAAATTCGACAAGATATTTTCG 57.085 29.630 2.29 2.29 0.00 3.46
800 915 7.138736 ACTTTGGTTGTATCAAATTCGACAAG 58.861 34.615 0.00 0.00 34.19 3.16
803 918 9.620660 AATTACTTTGGTTGTATCAAATTCGAC 57.379 29.630 0.00 0.00 34.19 4.20
817 932 4.767928 TGGCGGTATCAAATTACTTTGGTT 59.232 37.500 5.79 0.00 41.74 3.67
818 933 4.337145 TGGCGGTATCAAATTACTTTGGT 58.663 39.130 5.79 1.42 41.74 3.67
825 940 6.723298 ATTTGGATTGGCGGTATCAAATTA 57.277 33.333 0.00 0.00 0.00 1.40
924 3033 2.685380 AAGCGGAGAGGAGTGGGG 60.685 66.667 0.00 0.00 0.00 4.96
927 3036 0.967887 TCTGGAAGCGGAGAGGAGTG 60.968 60.000 0.00 0.00 0.00 3.51
928 3037 0.968393 GTCTGGAAGCGGAGAGGAGT 60.968 60.000 0.00 0.00 0.00 3.85
929 3038 0.682855 AGTCTGGAAGCGGAGAGGAG 60.683 60.000 0.00 0.00 0.00 3.69
930 3039 0.681564 GAGTCTGGAAGCGGAGAGGA 60.682 60.000 0.00 0.00 0.00 3.71
931 3040 1.671901 GGAGTCTGGAAGCGGAGAGG 61.672 65.000 0.00 0.00 0.00 3.69
932 3041 0.682855 AGGAGTCTGGAAGCGGAGAG 60.683 60.000 0.00 0.00 0.00 3.20
933 3042 0.681564 GAGGAGTCTGGAAGCGGAGA 60.682 60.000 0.00 0.00 0.00 3.71
934 3043 0.682855 AGAGGAGTCTGGAAGCGGAG 60.683 60.000 0.00 0.00 0.00 4.63
935 3044 0.251832 AAGAGGAGTCTGGAAGCGGA 60.252 55.000 0.00 0.00 31.37 5.54
936 3045 0.174617 GAAGAGGAGTCTGGAAGCGG 59.825 60.000 0.00 0.00 31.37 5.52
990 3116 2.202690 CTTACCATGGCGTCGCGA 60.203 61.111 13.04 3.71 0.00 5.87
995 3121 1.812571 CTTTCTTGCTTACCATGGCGT 59.187 47.619 13.04 0.00 0.00 5.68
1011 3137 1.076705 GGTGGGATCTGGGGCTTTC 60.077 63.158 0.00 0.00 0.00 2.62
1012 3138 2.626467 GGGTGGGATCTGGGGCTTT 61.626 63.158 0.00 0.00 0.00 3.51
1027 3153 3.602030 AGAGGGGACGAGGTGGGT 61.602 66.667 0.00 0.00 0.00 4.51
1034 3166 1.849975 AAGAGGACGAGAGGGGACGA 61.850 60.000 0.00 0.00 0.00 4.20
1036 3168 1.038681 GGAAGAGGACGAGAGGGGAC 61.039 65.000 0.00 0.00 0.00 4.46
1055 3187 3.793888 GGAACGCTGGGGTAGGGG 61.794 72.222 0.00 0.00 43.23 4.79
1068 3200 2.580966 ATTAGAGCTTCGGTCGGAAC 57.419 50.000 0.00 0.00 35.00 3.62
1069 3201 3.518590 GAAATTAGAGCTTCGGTCGGAA 58.481 45.455 0.00 0.00 35.00 4.30
1070 3202 2.479049 CGAAATTAGAGCTTCGGTCGGA 60.479 50.000 0.00 0.00 40.52 4.55
1071 3203 1.852895 CGAAATTAGAGCTTCGGTCGG 59.147 52.381 0.00 0.00 40.52 4.79
1072 3204 2.527100 ACGAAATTAGAGCTTCGGTCG 58.473 47.619 8.02 6.15 46.71 4.79
1079 3211 3.370633 GGAGGGGAAACGAAATTAGAGCT 60.371 47.826 0.00 0.00 0.00 4.09
1113 3245 4.596585 ACTGCGGGTTTGGGGGTG 62.597 66.667 0.00 0.00 0.00 4.61
1114 3246 4.280019 GACTGCGGGTTTGGGGGT 62.280 66.667 0.00 0.00 0.00 4.95
1174 3306 2.281484 GGCACCTGGTCGCAGAAA 60.281 61.111 18.44 0.00 39.69 2.52
1175 3307 4.680237 CGGCACCTGGTCGCAGAA 62.680 66.667 18.44 0.00 38.05 3.02
1210 3342 2.434185 CTCGCGCACAGGGCTAAA 60.434 61.111 8.75 0.00 41.67 1.85
1219 3351 4.547905 TAGTAGCCGCTCGCGCAC 62.548 66.667 8.75 3.58 44.76 5.34
1225 3357 2.327244 CCGTCGTAGTAGCCGCTC 59.673 66.667 0.00 0.00 0.00 5.03
1321 3453 2.044946 AACTTGCCGCCCCAGATC 60.045 61.111 0.00 0.00 0.00 2.75
1387 3519 2.438434 CCGGAGTTGGCCATGGAC 60.438 66.667 18.40 15.32 0.00 4.02
1613 3745 2.238144 CAGCCATCCAGGAGAGAAGAAA 59.762 50.000 0.00 0.00 41.22 2.52
1614 3746 1.836166 CAGCCATCCAGGAGAGAAGAA 59.164 52.381 0.00 0.00 41.22 2.52
1616 3748 0.469070 CCAGCCATCCAGGAGAGAAG 59.531 60.000 0.00 0.00 41.22 2.85
1617 3749 1.630126 GCCAGCCATCCAGGAGAGAA 61.630 60.000 0.00 0.00 41.22 2.87
1619 3751 2.509916 GCCAGCCATCCAGGAGAG 59.490 66.667 0.00 0.00 41.22 3.20
1620 3752 3.092511 GGCCAGCCATCCAGGAGA 61.093 66.667 3.12 0.00 41.22 3.71
1621 3753 3.095163 AGGCCAGCCATCCAGGAG 61.095 66.667 12.03 0.00 41.22 3.69
1645 3777 2.621517 ATTAGCAGCAGAGGCCAGGC 62.622 60.000 5.01 1.26 42.56 4.85
1647 3787 0.469070 AGATTAGCAGCAGAGGCCAG 59.531 55.000 5.01 0.00 42.56 4.85
1652 3792 3.551863 CGGTTCCTAGATTAGCAGCAGAG 60.552 52.174 0.00 0.00 0.00 3.35
1654 3794 2.546795 CCGGTTCCTAGATTAGCAGCAG 60.547 54.545 0.00 0.00 0.00 4.24
1657 3797 3.492829 GGTTCCGGTTCCTAGATTAGCAG 60.493 52.174 0.00 0.00 0.00 4.24
1680 3823 8.509690 CGATGATGATATTACAGAGCCAAATTT 58.490 33.333 0.00 0.00 0.00 1.82
1682 3825 7.164122 ACGATGATGATATTACAGAGCCAAAT 58.836 34.615 0.00 0.00 0.00 2.32
1686 3829 5.804473 CAGACGATGATGATATTACAGAGCC 59.196 44.000 0.00 0.00 0.00 4.70
1687 3830 5.804473 CCAGACGATGATGATATTACAGAGC 59.196 44.000 0.00 0.00 0.00 4.09
1703 3854 5.163437 GGTAGAATTCAGGTAACCAGACGAT 60.163 44.000 8.44 0.00 37.17 3.73
1708 3859 5.661759 AGGTAGGTAGAATTCAGGTAACCAG 59.338 44.000 8.44 0.00 37.17 4.00
1729 3880 2.221299 TTCTTGCGGGTAGGCAGGT 61.221 57.895 0.00 0.00 44.94 4.00
1730 3881 1.745489 GTTCTTGCGGGTAGGCAGG 60.745 63.158 0.00 0.00 44.94 4.85
1731 3882 0.392998 ATGTTCTTGCGGGTAGGCAG 60.393 55.000 0.00 0.00 44.94 4.85
1732 3883 0.676466 CATGTTCTTGCGGGTAGGCA 60.676 55.000 0.00 0.00 42.12 4.75
1733 3884 0.392461 TCATGTTCTTGCGGGTAGGC 60.392 55.000 0.00 0.00 0.00 3.93
1734 3885 1.942657 CATCATGTTCTTGCGGGTAGG 59.057 52.381 0.00 0.00 0.00 3.18
1735 3886 1.331756 GCATCATGTTCTTGCGGGTAG 59.668 52.381 0.00 0.00 0.00 3.18
1736 3887 1.065491 AGCATCATGTTCTTGCGGGTA 60.065 47.619 0.00 0.00 41.22 3.69
1737 3888 0.322816 AGCATCATGTTCTTGCGGGT 60.323 50.000 0.00 0.00 41.22 5.28
1740 3891 0.450583 AGCAGCATCATGTTCTTGCG 59.549 50.000 0.00 0.00 41.22 4.85
1758 3909 8.197439 TCATCATTCAACACACCAGTATACTAG 58.803 37.037 4.74 0.08 0.00 2.57
1760 3911 6.946340 TCATCATTCAACACACCAGTATACT 58.054 36.000 0.00 0.00 0.00 2.12
1761 3912 7.792374 ATCATCATTCAACACACCAGTATAC 57.208 36.000 0.00 0.00 0.00 1.47
1774 3934 5.838531 TGCATTGCAGTATCATCATTCAA 57.161 34.783 7.38 0.00 33.32 2.69
1778 3938 3.304458 CGCTTGCATTGCAGTATCATCAT 60.304 43.478 11.76 0.00 40.61 2.45
1784 3944 2.598589 CAAACGCTTGCATTGCAGTAT 58.401 42.857 11.76 0.00 40.61 2.12
1793 3953 2.017782 TCACTTAACCAAACGCTTGCA 58.982 42.857 0.00 0.00 0.00 4.08
1794 3954 2.766970 TCACTTAACCAAACGCTTGC 57.233 45.000 0.00 0.00 0.00 4.01
1795 3955 6.129194 GCTTAATTCACTTAACCAAACGCTTG 60.129 38.462 0.00 0.00 0.00 4.01
1796 3956 5.918576 GCTTAATTCACTTAACCAAACGCTT 59.081 36.000 0.00 0.00 0.00 4.68
1797 3957 5.240844 AGCTTAATTCACTTAACCAAACGCT 59.759 36.000 0.00 0.00 0.00 5.07
1798 3958 5.342259 CAGCTTAATTCACTTAACCAAACGC 59.658 40.000 0.00 0.00 0.00 4.84
1799 3959 5.342259 GCAGCTTAATTCACTTAACCAAACG 59.658 40.000 0.00 0.00 0.00 3.60
1800 3960 5.342259 CGCAGCTTAATTCACTTAACCAAAC 59.658 40.000 0.00 0.00 0.00 2.93
1810 3970 1.017387 CCTCCCGCAGCTTAATTCAC 58.983 55.000 0.00 0.00 0.00 3.18
1813 3973 2.689983 CAAATCCTCCCGCAGCTTAATT 59.310 45.455 0.00 0.00 0.00 1.40
1814 3974 2.301346 CAAATCCTCCCGCAGCTTAAT 58.699 47.619 0.00 0.00 0.00 1.40
1815 3975 1.004277 ACAAATCCTCCCGCAGCTTAA 59.996 47.619 0.00 0.00 0.00 1.85
1817 3977 0.678048 GACAAATCCTCCCGCAGCTT 60.678 55.000 0.00 0.00 0.00 3.74
1818 3978 1.078143 GACAAATCCTCCCGCAGCT 60.078 57.895 0.00 0.00 0.00 4.24
1819 3979 1.377202 TGACAAATCCTCCCGCAGC 60.377 57.895 0.00 0.00 0.00 5.25
1820 3980 1.026718 GGTGACAAATCCTCCCGCAG 61.027 60.000 0.00 0.00 0.00 5.18
1824 3984 2.879103 TTCAGGTGACAAATCCTCCC 57.121 50.000 0.00 0.00 30.91 4.30
1825 3985 5.946377 ACTAAATTCAGGTGACAAATCCTCC 59.054 40.000 0.00 0.00 30.91 4.30
1826 3986 7.308435 CAACTAAATTCAGGTGACAAATCCTC 58.692 38.462 0.00 0.00 35.06 3.71
1827 3987 6.294731 GCAACTAAATTCAGGTGACAAATCCT 60.295 38.462 0.00 0.00 35.06 3.24
1828 3988 5.863935 GCAACTAAATTCAGGTGACAAATCC 59.136 40.000 0.00 0.00 35.06 3.01
1829 3989 5.863935 GGCAACTAAATTCAGGTGACAAATC 59.136 40.000 0.00 0.00 41.29 2.17
1830 3990 5.783111 GGCAACTAAATTCAGGTGACAAAT 58.217 37.500 0.00 0.00 41.29 2.32
1831 3991 5.195001 GGCAACTAAATTCAGGTGACAAA 57.805 39.130 0.00 0.00 41.29 2.83
1866 4100 2.796593 GTTTCATGTTGTTCTTGCAGGC 59.203 45.455 0.00 0.00 0.00 4.85
1872 4106 5.885912 ACCAGTACAGTTTCATGTTGTTCTT 59.114 36.000 0.00 0.00 34.56 2.52
1873 4107 5.437060 ACCAGTACAGTTTCATGTTGTTCT 58.563 37.500 0.00 0.00 34.56 3.01
1874 4108 5.751243 ACCAGTACAGTTTCATGTTGTTC 57.249 39.130 0.00 0.00 34.56 3.18
1877 4111 8.443160 CACTATAACCAGTACAGTTTCATGTTG 58.557 37.037 6.62 0.00 34.56 3.33
1885 4119 7.719871 ATCAGTCACTATAACCAGTACAGTT 57.280 36.000 6.55 6.55 0.00 3.16
1896 4130 7.951591 TGCAGCAGTATAATCAGTCACTATAA 58.048 34.615 0.00 0.00 0.00 0.98
1901 4135 4.872691 AGTTGCAGCAGTATAATCAGTCAC 59.127 41.667 2.55 0.00 0.00 3.67
1923 4438 1.923864 GCGAAACACCAAACCAAACAG 59.076 47.619 0.00 0.00 0.00 3.16
1933 4448 1.453015 ACAAGCCAGCGAAACACCA 60.453 52.632 0.00 0.00 0.00 4.17
1934 4449 1.008538 CACAAGCCAGCGAAACACC 60.009 57.895 0.00 0.00 0.00 4.16
1935 4450 0.317020 GTCACAAGCCAGCGAAACAC 60.317 55.000 0.00 0.00 0.00 3.32
1938 4453 0.179059 TCAGTCACAAGCCAGCGAAA 60.179 50.000 0.00 0.00 0.00 3.46
1941 4456 0.445436 GAATCAGTCACAAGCCAGCG 59.555 55.000 0.00 0.00 0.00 5.18
1954 4470 2.555199 GTCGGGTGGATGAAGAATCAG 58.445 52.381 0.00 0.00 39.39 2.90
1957 4473 1.191535 TCGTCGGGTGGATGAAGAAT 58.808 50.000 0.00 0.00 37.74 2.40
1971 4492 2.286223 CAAAATCGTGTGTGTTCGTCG 58.714 47.619 0.00 0.00 0.00 5.12
1995 4516 7.558807 AGATCATGTAAATTTTGGAGCTGATGA 59.441 33.333 0.00 0.00 0.00 2.92
2020 4541 3.978687 ACACAAACACTCCGAGAGTTAG 58.021 45.455 11.08 7.59 41.37 2.34
2029 4550 4.157105 ACAGGTTACAAACACAAACACTCC 59.843 41.667 0.00 0.00 0.00 3.85
2046 4622 1.831736 CGGGGTAGATCAGAACAGGTT 59.168 52.381 0.00 0.00 0.00 3.50
2122 4733 1.817099 CGGCTGGAGATCCAACTGC 60.817 63.158 2.65 3.18 46.97 4.40
2140 4751 0.603975 GGCACATCTTCCTATCGGCC 60.604 60.000 0.00 0.00 0.00 6.13
2159 4770 2.162208 ACTAGCAATCGCACCAACAATG 59.838 45.455 0.00 0.00 42.27 2.82
2160 4771 2.436417 ACTAGCAATCGCACCAACAAT 58.564 42.857 0.00 0.00 42.27 2.71
2161 4772 1.890876 ACTAGCAATCGCACCAACAA 58.109 45.000 0.00 0.00 42.27 2.83
2178 4789 5.329035 ACTTGCATTCTGACAAACAAACT 57.671 34.783 0.00 0.00 0.00 2.66
2181 4792 5.321959 TCAACTTGCATTCTGACAAACAA 57.678 34.783 0.00 0.00 0.00 2.83
2184 4795 7.092079 CCATTATCAACTTGCATTCTGACAAA 58.908 34.615 0.00 0.00 0.00 2.83
2185 4796 6.209192 ACCATTATCAACTTGCATTCTGACAA 59.791 34.615 0.00 0.00 0.00 3.18
2187 4798 6.199937 ACCATTATCAACTTGCATTCTGAC 57.800 37.500 0.00 0.00 0.00 3.51
2189 4800 6.309494 CACAACCATTATCAACTTGCATTCTG 59.691 38.462 0.00 0.00 0.00 3.02
2190 4801 6.209192 TCACAACCATTATCAACTTGCATTCT 59.791 34.615 0.00 0.00 0.00 2.40
2191 4802 6.389091 TCACAACCATTATCAACTTGCATTC 58.611 36.000 0.00 0.00 0.00 2.67
2192 4803 6.209192 TCTCACAACCATTATCAACTTGCATT 59.791 34.615 0.00 0.00 0.00 3.56
2236 4863 2.359900 CCTCCCAGTATTCAGCACAAC 58.640 52.381 0.00 0.00 0.00 3.32
2242 4869 1.701847 CCATCCCCTCCCAGTATTCAG 59.298 57.143 0.00 0.00 0.00 3.02
2264 4891 3.181503 CGAAACCTGATGCTTGAATCCAG 60.182 47.826 0.00 0.00 0.00 3.86
2274 4901 2.094417 GCTGTTACTCGAAACCTGATGC 59.906 50.000 0.00 0.00 0.00 3.91
2286 4913 6.074249 GGTGCTTAATTAGATCGCTGTTACTC 60.074 42.308 0.00 0.00 0.00 2.59
2292 4919 3.466836 TGGGTGCTTAATTAGATCGCTG 58.533 45.455 0.00 0.00 0.00 5.18
2313 4940 4.884164 GCCCTCTATTAGTTGCAAGTGATT 59.116 41.667 17.21 4.11 0.00 2.57
2314 4941 4.455606 GCCCTCTATTAGTTGCAAGTGAT 58.544 43.478 17.21 16.06 0.00 3.06
2321 4948 3.847671 AAGAGGCCCTCTATTAGTTGC 57.152 47.619 15.10 0.00 40.28 4.17
2322 4949 9.847224 TTATTTAAAGAGGCCCTCTATTAGTTG 57.153 33.333 15.10 0.00 40.28 3.16
2336 4963 9.384764 CCTGTAGAGGTTTCTTATTTAAAGAGG 57.615 37.037 0.00 0.00 34.16 3.69
2354 4981 1.655329 GGCCGATCGACCTGTAGAG 59.345 63.158 18.66 0.00 0.00 2.43
2358 4985 1.910580 AATTGGGCCGATCGACCTGT 61.911 55.000 20.31 9.81 0.00 4.00
2369 4996 7.112452 AGATTATCTGTAAAACAATTGGGCC 57.888 36.000 10.83 0.00 0.00 5.80
2395 5022 4.842091 CGCAGCCATCGCCAAAGC 62.842 66.667 0.00 0.00 34.57 3.51
2446 5150 2.136298 ACGAGAGCCTTCTGAGATGA 57.864 50.000 0.00 0.00 32.53 2.92
2467 5171 5.757886 TCCTAGAAATGTGAAAAACTTGCG 58.242 37.500 0.00 0.00 0.00 4.85
2471 5175 7.993183 TGAAGACTCCTAGAAATGTGAAAAACT 59.007 33.333 0.00 0.00 0.00 2.66
2480 5184 7.307870 GCAATGCTATGAAGACTCCTAGAAATG 60.308 40.741 0.00 0.00 0.00 2.32
2533 5237 0.586802 GACGGGTTGAACTGAACTGC 59.413 55.000 0.00 0.00 0.00 4.40
2586 5290 2.092429 ACAGAGAAAGAACAGGGCAACA 60.092 45.455 0.00 0.00 39.74 3.33
2587 5291 2.576615 ACAGAGAAAGAACAGGGCAAC 58.423 47.619 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.