Multiple sequence alignment - TraesCS4A01G422800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G422800 chr4A 100.000 8069 0 0 1 8069 692970236 692962168 0.000000e+00 14901.0
1 TraesCS4A01G422800 chr4A 95.161 124 6 0 4651 4774 658949234 658949111 6.390000e-46 196.0
2 TraesCS4A01G422800 chr7A 92.009 2578 114 28 4772 7310 33198328 33195804 0.000000e+00 3535.0
3 TraesCS4A01G422800 chr7A 95.512 1961 72 10 2699 4654 33200280 33198331 0.000000e+00 3120.0
4 TraesCS4A01G422800 chr7A 88.998 2136 141 40 581 2672 33202350 33200265 0.000000e+00 2556.0
5 TraesCS4A01G422800 chr7A 84.580 655 76 18 7427 8069 33195781 33195140 1.910000e-175 627.0
6 TraesCS4A01G422800 chr7A 80.840 381 34 19 91 457 33202825 33202470 6.210000e-66 263.0
7 TraesCS4A01G422800 chr7D 90.417 2713 157 41 5343 8009 32956241 32953586 0.000000e+00 3474.0
8 TraesCS4A01G422800 chr7D 95.774 1964 63 10 2699 4654 32958703 32956752 0.000000e+00 3149.0
9 TraesCS4A01G422800 chr7D 86.837 2659 159 74 81 2671 32961224 32958689 0.000000e+00 2795.0
10 TraesCS4A01G422800 chr7D 95.260 443 12 4 4772 5206 32956749 32956308 0.000000e+00 693.0
11 TraesCS4A01G422800 chr7D 90.909 44 4 0 7386 7429 92639008 92639051 8.750000e-05 60.2
12 TraesCS4A01G422800 chr6B 90.990 677 49 10 1145 1811 402446880 402447554 0.000000e+00 902.0
13 TraesCS4A01G422800 chr7B 86.831 486 52 10 3201 3678 685038632 685038151 4.290000e-147 532.0
14 TraesCS4A01G422800 chr2B 88.303 436 41 8 3216 3649 152709860 152710287 1.550000e-141 514.0
15 TraesCS4A01G422800 chr2B 96.774 31 1 0 1032 1062 779863803 779863833 1.500000e-02 52.8
16 TraesCS4A01G422800 chr5B 85.652 460 56 9 3201 3653 547361123 547360667 7.330000e-130 475.0
17 TraesCS4A01G422800 chr3A 86.499 437 54 5 3214 3649 697533389 697533821 7.330000e-130 475.0
18 TraesCS4A01G422800 chr3A 85.088 456 58 9 3201 3649 425584632 425584180 2.650000e-124 457.0
19 TraesCS4A01G422800 chr2D 85.977 435 57 4 3216 3649 597648082 597647651 5.700000e-126 462.0
20 TraesCS4A01G422800 chr2D 97.436 117 3 0 4654 4770 337693411 337693527 4.940000e-47 200.0
21 TraesCS4A01G422800 chr4B 84.934 458 58 10 3201 3651 471267375 471266922 3.430000e-123 453.0
22 TraesCS4A01G422800 chr4D 98.319 119 2 0 4652 4770 507908254 507908136 8.210000e-50 209.0
23 TraesCS4A01G422800 chr4D 96.667 120 4 0 4651 4770 43670343 43670224 4.940000e-47 200.0
24 TraesCS4A01G422800 chr2A 98.291 117 2 0 4654 4770 62286245 62286361 1.060000e-48 206.0
25 TraesCS4A01G422800 chr2A 93.023 129 9 0 4647 4775 26851545 26851673 1.070000e-43 189.0
26 TraesCS4A01G422800 chr5D 96.639 119 4 0 4653 4771 542697465 542697583 1.780000e-46 198.0
27 TraesCS4A01G422800 chr3D 92.248 129 10 0 4643 4771 7308046 7308174 4.970000e-42 183.0
28 TraesCS4A01G422800 chr3D 90.385 52 5 0 4985 5036 2381013 2380962 1.450000e-07 69.4
29 TraesCS4A01G422800 chr1B 89.510 143 13 2 4629 4771 512639493 512639353 6.430000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G422800 chr4A 692962168 692970236 8068 True 14901.00 14901 100.0000 1 8069 1 chr4A.!!$R2 8068
1 TraesCS4A01G422800 chr7A 33195140 33202825 7685 True 2020.20 3535 88.3878 91 8069 5 chr7A.!!$R1 7978
2 TraesCS4A01G422800 chr7D 32953586 32961224 7638 True 2527.75 3474 92.0720 81 8009 4 chr7D.!!$R1 7928
3 TraesCS4A01G422800 chr6B 402446880 402447554 674 False 902.00 902 90.9900 1145 1811 1 chr6B.!!$F1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 725 0.179145 ACGCGAGGTTTACAGATCGG 60.179 55.0 15.93 0.0 35.76 4.18 F
1380 1509 0.108329 ACTCGATCGATTGCGGGTTT 60.108 50.0 19.78 0.0 38.16 3.27 F
1865 2016 0.047332 AAATGTAGGGGGCTAGGGGT 59.953 55.0 0.00 0.0 0.00 4.95 F
2751 2910 0.109723 TGGTTCCTGTCTTTTCCCCG 59.890 55.0 0.00 0.0 0.00 5.73 F
2868 3029 0.671781 CGAAGTGCTGTGAAGGGGAG 60.672 60.0 0.00 0.0 0.00 4.30 F
4671 4835 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
4672 4836 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
4675 4839 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
5100 5271 0.179081 GGGATCCTGCTTGTACGACC 60.179 60.0 12.58 0.0 0.00 4.79 F
5701 5872 0.250295 CCCTCGGCAGTTGAACTTGA 60.250 55.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1784 1929 0.520404 GCTCGCAGCCAATATCCATG 59.480 55.000 0.00 0.0 34.48 3.66 R
2872 3033 0.475632 TCAGTGTGGACCCCTTGGAT 60.476 55.000 0.00 0.0 34.81 3.41 R
3195 3356 1.321474 CTGAAGCAAAGCAGGAACCA 58.679 50.000 0.00 0.0 0.00 3.67 R
4654 4818 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.0 46.06 3.85 R
4752 4916 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.0 0.00 3.46 R
6524 6722 1.487482 ATACGACAATCATCGGTGCG 58.513 50.000 0.00 0.0 46.56 5.34 R
6661 6861 4.903149 TGATAAATGGAAGGACTAGGGGA 58.097 43.478 0.00 0.0 0.00 4.81 R
6662 6862 5.646692 TTGATAAATGGAAGGACTAGGGG 57.353 43.478 0.00 0.0 0.00 4.79 R
6695 6896 0.830648 TAGGATTGCCGACCAGAAGG 59.169 55.000 0.00 0.0 39.96 3.46 R
7315 7533 0.179148 GGCCCGGTTAAATTCTTGCG 60.179 55.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.043168 ACGCAGGTGACGGAAAAG 57.957 55.556 0.00 0.00 34.00 2.27
22 23 2.251642 ACGCAGGTGACGGAAAAGC 61.252 57.895 0.00 0.00 34.00 3.51
23 24 2.954611 GCAGGTGACGGAAAAGCC 59.045 61.111 0.00 0.00 0.00 4.35
24 25 2.626780 GCAGGTGACGGAAAAGCCC 61.627 63.158 0.00 0.00 0.00 5.19
48 49 4.729918 GACCACCAGCCAGCCCAG 62.730 72.222 0.00 0.00 0.00 4.45
50 51 4.729918 CCACCAGCCAGCCCAGAC 62.730 72.222 0.00 0.00 0.00 3.51
51 52 4.729918 CACCAGCCAGCCCAGACC 62.730 72.222 0.00 0.00 0.00 3.85
62 63 4.436998 CCAGACCCGCTCCGTCAC 62.437 72.222 0.00 0.00 32.41 3.67
63 64 3.680786 CAGACCCGCTCCGTCACA 61.681 66.667 0.00 0.00 32.41 3.58
64 65 2.680352 AGACCCGCTCCGTCACAT 60.680 61.111 0.00 0.00 32.41 3.21
65 66 2.264794 GACCCGCTCCGTCACATT 59.735 61.111 0.00 0.00 0.00 2.71
66 67 1.810030 GACCCGCTCCGTCACATTC 60.810 63.158 0.00 0.00 0.00 2.67
67 68 2.227089 GACCCGCTCCGTCACATTCT 62.227 60.000 0.00 0.00 0.00 2.40
68 69 1.519455 CCCGCTCCGTCACATTCTC 60.519 63.158 0.00 0.00 0.00 2.87
69 70 1.519455 CCGCTCCGTCACATTCTCC 60.519 63.158 0.00 0.00 0.00 3.71
70 71 1.215382 CGCTCCGTCACATTCTCCA 59.785 57.895 0.00 0.00 0.00 3.86
71 72 1.078759 CGCTCCGTCACATTCTCCAC 61.079 60.000 0.00 0.00 0.00 4.02
72 73 1.078759 GCTCCGTCACATTCTCCACG 61.079 60.000 0.00 0.00 0.00 4.94
73 74 1.078759 CTCCGTCACATTCTCCACGC 61.079 60.000 0.00 0.00 0.00 5.34
74 75 2.444624 CCGTCACATTCTCCACGCG 61.445 63.158 3.53 3.53 0.00 6.01
75 76 1.733041 CGTCACATTCTCCACGCGT 60.733 57.895 5.58 5.58 0.00 6.01
76 77 0.455464 CGTCACATTCTCCACGCGTA 60.455 55.000 13.44 0.00 0.00 4.42
77 78 1.797713 CGTCACATTCTCCACGCGTAT 60.798 52.381 13.44 0.00 0.00 3.06
78 79 1.852895 GTCACATTCTCCACGCGTATC 59.147 52.381 13.44 0.00 0.00 2.24
79 80 0.846401 CACATTCTCCACGCGTATCG 59.154 55.000 13.44 2.00 45.38 2.92
103 104 1.271102 GATGTATCTCCTCGCAGACCC 59.729 57.143 0.00 0.00 0.00 4.46
124 125 1.827399 GACTGGACCCGACCACACAT 61.827 60.000 0.00 0.00 35.91 3.21
186 195 6.534079 GCTACACATACATTTTCCTTCGTACT 59.466 38.462 0.00 0.00 0.00 2.73
187 196 7.703621 GCTACACATACATTTTCCTTCGTACTA 59.296 37.037 0.00 0.00 0.00 1.82
188 197 7.823149 ACACATACATTTTCCTTCGTACTAC 57.177 36.000 0.00 0.00 0.00 2.73
189 198 7.380536 ACACATACATTTTCCTTCGTACTACA 58.619 34.615 0.00 0.00 0.00 2.74
190 199 7.544566 ACACATACATTTTCCTTCGTACTACAG 59.455 37.037 0.00 0.00 0.00 2.74
191 200 7.544566 CACATACATTTTCCTTCGTACTACAGT 59.455 37.037 0.00 0.00 0.00 3.55
219 228 2.730672 GGAGCAAGCGCGTACAGTG 61.731 63.158 8.43 0.00 45.49 3.66
253 262 1.219522 GGAAACGCGTATCCCGATGG 61.220 60.000 14.46 0.00 39.56 3.51
255 264 0.249322 AAACGCGTATCCCGATGGAG 60.249 55.000 14.46 0.00 46.08 3.86
256 265 2.430921 CGCGTATCCCGATGGAGC 60.431 66.667 0.00 0.00 46.08 4.70
257 266 2.734591 GCGTATCCCGATGGAGCA 59.265 61.111 0.00 0.00 46.08 4.26
258 267 1.373497 GCGTATCCCGATGGAGCAG 60.373 63.158 0.00 0.00 46.08 4.24
259 268 1.290324 CGTATCCCGATGGAGCAGG 59.710 63.158 0.00 0.00 46.08 4.85
260 269 1.004440 GTATCCCGATGGAGCAGGC 60.004 63.158 0.00 0.00 46.08 4.85
378 403 4.791069 TACGGTCCTGCCCCTCCC 62.791 72.222 0.00 0.00 0.00 4.30
426 451 2.823114 TCCGTCGCCAGGACAAAA 59.177 55.556 0.00 0.00 46.42 2.44
470 544 0.959553 TCTTTTCCGACGAGCTGTCT 59.040 50.000 12.45 0.00 45.87 3.41
471 545 1.063806 CTTTTCCGACGAGCTGTCTG 58.936 55.000 12.45 7.67 45.87 3.51
472 546 0.387929 TTTTCCGACGAGCTGTCTGT 59.612 50.000 12.45 0.00 45.87 3.41
477 551 2.955402 ACGAGCTGTCTGTCGTCC 59.045 61.111 0.00 0.00 46.17 4.79
479 553 1.154131 CGAGCTGTCTGTCGTCCAG 60.154 63.158 0.00 0.00 42.97 3.86
481 555 2.807045 GCTGTCTGTCGTCCAGCG 60.807 66.667 0.00 0.00 41.80 5.18
497 577 6.584942 TCGTCCAGCGATATACATTTATTGTC 59.415 38.462 0.00 0.00 45.68 3.18
512 592 9.082313 ACATTTATTGTCTGGATTTGTTTCTCT 57.918 29.630 0.00 0.00 30.89 3.10
520 600 0.521735 ATTTGTTTCTCTTCGCGGCC 59.478 50.000 6.13 0.00 0.00 6.13
618 699 2.803133 GCTCCCCAAAAAGTCACAAAGC 60.803 50.000 0.00 0.00 0.00 3.51
625 706 1.473258 AAAGTCACAAAGCCTGCACA 58.527 45.000 0.00 0.00 0.00 4.57
644 725 0.179145 ACGCGAGGTTTACAGATCGG 60.179 55.000 15.93 0.00 35.76 4.18
645 726 0.179145 CGCGAGGTTTACAGATCGGT 60.179 55.000 0.00 3.43 35.76 4.69
648 729 1.749634 CGAGGTTTACAGATCGGTCCT 59.250 52.381 0.39 2.95 0.00 3.85
650 731 2.758979 GAGGTTTACAGATCGGTCCTCA 59.241 50.000 20.29 0.00 39.52 3.86
653 734 3.429135 GGTTTACAGATCGGTCCTCAGTC 60.429 52.174 0.39 0.00 0.00 3.51
659 740 1.608717 ATCGGTCCTCAGTCACTGCC 61.609 60.000 0.00 0.00 0.00 4.85
665 746 1.081892 CCTCAGTCACTGCCGAATTG 58.918 55.000 0.00 0.00 0.00 2.32
684 765 2.884207 CGTAACGCTCCTTCGGGC 60.884 66.667 0.00 0.00 34.44 6.13
707 797 4.688419 CGTGCCAGCGCTGTTTGG 62.688 66.667 33.75 21.79 37.53 3.28
708 798 3.595758 GTGCCAGCGCTGTTTGGT 61.596 61.111 33.75 0.00 36.81 3.67
709 799 2.832661 TGCCAGCGCTGTTTGGTT 60.833 55.556 33.75 0.00 36.81 3.67
715 805 1.657181 GCGCTGTTTGGTTTCGTGG 60.657 57.895 0.00 0.00 0.00 4.94
725 815 3.201353 TGGTTTCGTGGAGTGAAATGA 57.799 42.857 0.00 0.00 37.62 2.57
731 821 2.028112 TCGTGGAGTGAAATGAGGGAAG 60.028 50.000 0.00 0.00 0.00 3.46
799 889 3.775654 CGAGGTCAGGTCAGGCCC 61.776 72.222 0.00 0.00 38.26 5.80
800 890 2.284995 GAGGTCAGGTCAGGCCCT 60.285 66.667 0.00 0.00 38.26 5.19
860 950 5.612725 TTTCAAATTTCCTCAACAGCCTT 57.387 34.783 0.00 0.00 0.00 4.35
861 951 4.853924 TCAAATTTCCTCAACAGCCTTC 57.146 40.909 0.00 0.00 0.00 3.46
862 952 3.573967 TCAAATTTCCTCAACAGCCTTCC 59.426 43.478 0.00 0.00 0.00 3.46
916 1006 4.090057 GAACAAGCACCTCGCCGC 62.090 66.667 0.00 0.00 44.04 6.53
1052 1143 3.535962 CTCCTCCTCCTGCTCCGC 61.536 72.222 0.00 0.00 0.00 5.54
1094 1194 1.305046 GGTTCGAGGAGGTGGAGGA 60.305 63.158 0.00 0.00 0.00 3.71
1095 1195 1.605971 GGTTCGAGGAGGTGGAGGAC 61.606 65.000 0.00 0.00 0.00 3.85
1098 1198 1.677966 CGAGGAGGTGGAGGACGAA 60.678 63.158 0.00 0.00 0.00 3.85
1100 1200 0.323542 GAGGAGGTGGAGGACGAAGA 60.324 60.000 0.00 0.00 0.00 2.87
1143 1243 2.048503 GTCCGGTGGTTCGAGGTG 60.049 66.667 0.00 0.00 0.00 4.00
1326 1454 3.423154 GCGCTCCGTGTTTCCCTG 61.423 66.667 0.00 0.00 0.00 4.45
1327 1455 3.423154 CGCTCCGTGTTTCCCTGC 61.423 66.667 0.00 0.00 0.00 4.85
1328 1456 2.032681 GCTCCGTGTTTCCCTGCT 59.967 61.111 0.00 0.00 0.00 4.24
1329 1457 2.035442 GCTCCGTGTTTCCCTGCTC 61.035 63.158 0.00 0.00 0.00 4.26
1330 1458 1.674057 CTCCGTGTTTCCCTGCTCT 59.326 57.895 0.00 0.00 0.00 4.09
1331 1459 0.671781 CTCCGTGTTTCCCTGCTCTG 60.672 60.000 0.00 0.00 0.00 3.35
1354 1482 5.584649 TGTCCACGATTCCAGAAATTACATC 59.415 40.000 0.00 0.00 0.00 3.06
1380 1509 0.108329 ACTCGATCGATTGCGGGTTT 60.108 50.000 19.78 0.00 38.16 3.27
1387 1517 1.801512 GATTGCGGGTTTGCGCTTC 60.802 57.895 9.73 0.00 37.81 3.86
1393 1523 3.284449 GGTTTGCGCTTCCCGTGT 61.284 61.111 9.73 0.00 39.71 4.49
1399 1529 2.434884 CGCTTCCCGTGTGCAGAT 60.435 61.111 0.00 0.00 0.00 2.90
1452 1585 2.440980 GCTGGAGATTGGGTGGGC 60.441 66.667 0.00 0.00 0.00 5.36
1457 1590 1.384191 GAGATTGGGTGGGCCAACT 59.616 57.895 23.12 0.15 36.17 3.16
1521 1657 1.111715 ACGGAGTAGCGTATTCCCCC 61.112 60.000 0.00 0.00 41.94 5.40
1531 1667 2.744166 GCGTATTCCCCCTTCCAAGTAC 60.744 54.545 0.00 0.00 0.00 2.73
1605 1741 1.285641 CAGGGACAAAATTGCGCGT 59.714 52.632 8.43 0.00 0.00 6.01
1629 1765 7.254795 CGTCCATTTATTGTAATTCTCTGACCC 60.255 40.741 0.00 0.00 0.00 4.46
1763 1908 0.899720 CATGGCAGCATTCTGGGTTT 59.100 50.000 0.00 0.00 40.65 3.27
1771 1916 4.082026 GCAGCATTCTGGGTTTGAGTATTT 60.082 41.667 0.00 0.00 40.65 1.40
1780 1925 5.931294 TGGGTTTGAGTATTTGTCAGTACA 58.069 37.500 0.00 0.00 0.00 2.90
1784 1929 8.448615 GGGTTTGAGTATTTGTCAGTACATAAC 58.551 37.037 0.00 0.00 34.97 1.89
1822 1973 3.561143 AGCAGTGGTTTCCATGTTTGTA 58.439 40.909 0.00 0.00 35.28 2.41
1853 2004 7.498900 TGCAATTGGTGGTAGATAGAAATGTAG 59.501 37.037 7.72 0.00 0.00 2.74
1865 2016 0.047332 AAATGTAGGGGGCTAGGGGT 59.953 55.000 0.00 0.00 0.00 4.95
1871 2022 2.768022 GGGGGCTAGGGGTTGATGG 61.768 68.421 0.00 0.00 0.00 3.51
1897 2052 5.351465 CAGACAAACAAGCCACTACGATATT 59.649 40.000 0.00 0.00 0.00 1.28
1952 2107 4.333926 GTGTTATTGATGCCTCCTCAGTTC 59.666 45.833 0.00 0.00 0.00 3.01
2003 2158 6.655078 AGAAATGTGTTAATTTCCAGCAGT 57.345 33.333 6.14 0.00 44.29 4.40
2006 2161 7.439056 AGAAATGTGTTAATTTCCAGCAGTTTG 59.561 33.333 6.14 0.00 44.29 2.93
2016 2173 4.379339 TCCAGCAGTTTGTTTTGGTTAC 57.621 40.909 0.00 0.00 0.00 2.50
2021 2178 4.464597 AGCAGTTTGTTTTGGTTACTTCCA 59.535 37.500 0.00 0.00 35.49 3.53
2053 2210 2.985896 TCATCCTAACGAGCAAAAGGG 58.014 47.619 0.00 0.00 0.00 3.95
2112 2269 8.937634 ATAGTTTCAACAGTAGTTATAACCGG 57.062 34.615 12.05 0.00 35.85 5.28
2113 2270 5.640783 AGTTTCAACAGTAGTTATAACCGGC 59.359 40.000 12.05 3.16 35.85 6.13
2121 2278 7.333323 ACAGTAGTTATAACCGGCTTTACATT 58.667 34.615 12.05 0.00 0.00 2.71
2147 2304 9.665719 TTCATCTACTGCAAACACTAAATGATA 57.334 29.630 0.00 0.00 0.00 2.15
2185 2342 4.201970 TGTGTGCAGTTACTTTTTAGCCAC 60.202 41.667 0.00 0.00 0.00 5.01
2367 2525 2.416107 CTGAAGACCTTGGGCTGCCA 62.416 60.000 22.05 3.69 0.00 4.92
2421 2579 1.152943 TGTGCGTTGCCCTAAACCA 60.153 52.632 0.00 0.00 0.00 3.67
2432 2590 2.161609 GCCCTAAACCATCTCAACGTTG 59.838 50.000 22.35 22.35 0.00 4.10
2482 2640 6.609237 ATCGATCACATGTACCAAATGAAG 57.391 37.500 0.00 0.00 0.00 3.02
2677 2836 9.184523 TCACTAATGTTGTTTATCATTAAGGGG 57.815 33.333 0.00 0.00 36.51 4.79
2678 2837 8.413229 CACTAATGTTGTTTATCATTAAGGGGG 58.587 37.037 0.00 0.00 36.51 5.40
2679 2838 8.340757 ACTAATGTTGTTTATCATTAAGGGGGA 58.659 33.333 0.00 0.00 36.51 4.81
2680 2839 9.367160 CTAATGTTGTTTATCATTAAGGGGGAT 57.633 33.333 0.00 0.00 36.51 3.85
2682 2841 8.940397 ATGTTGTTTATCATTAAGGGGGATAG 57.060 34.615 0.00 0.00 0.00 2.08
2683 2842 6.775629 TGTTGTTTATCATTAAGGGGGATAGC 59.224 38.462 0.00 0.00 0.00 2.97
2684 2843 5.887754 TGTTTATCATTAAGGGGGATAGCC 58.112 41.667 0.00 0.00 0.00 3.93
2694 2853 3.581163 GGGATAGCCCGGTTCAAAA 57.419 52.632 0.00 0.00 46.48 2.44
2695 2854 1.842052 GGGATAGCCCGGTTCAAAAA 58.158 50.000 0.00 0.00 46.48 1.94
2737 2896 2.101415 GGAATTTAGCCTGCCATGGTTC 59.899 50.000 14.67 5.53 0.00 3.62
2751 2910 0.109723 TGGTTCCTGTCTTTTCCCCG 59.890 55.000 0.00 0.00 0.00 5.73
2755 2916 1.002502 CCTGTCTTTTCCCCGTCCC 60.003 63.158 0.00 0.00 0.00 4.46
2760 2921 1.884579 GTCTTTTCCCCGTCCCTTTTC 59.115 52.381 0.00 0.00 0.00 2.29
2788 2949 9.729023 TGAAATGTAATTGTTTTGTGTACTCTG 57.271 29.630 0.00 0.00 36.10 3.35
2800 2961 3.259064 GTGTACTCTGCGCAAAATAGGA 58.741 45.455 13.05 2.59 0.00 2.94
2868 3029 0.671781 CGAAGTGCTGTGAAGGGGAG 60.672 60.000 0.00 0.00 0.00 4.30
2872 3033 2.054799 AGTGCTGTGAAGGGGAGTTTA 58.945 47.619 0.00 0.00 0.00 2.01
2949 3110 5.126061 ACAAGCAACTTGAAGTGAAGAATGT 59.874 36.000 13.94 0.00 43.42 2.71
3069 3230 6.751888 GTCTGCTGTTTCTTTTAGCTTCAAAA 59.248 34.615 0.00 0.00 38.25 2.44
3094 3255 6.472686 TTACCAACCACACTAGCAATTTTT 57.527 33.333 0.00 0.00 0.00 1.94
3103 3264 7.023575 CCACACTAGCAATTTTTGTATGTCTC 58.976 38.462 0.00 0.00 0.00 3.36
3106 3267 7.445402 ACACTAGCAATTTTTGTATGTCTCTGT 59.555 33.333 0.00 0.00 0.00 3.41
3195 3356 8.252417 TCGTTAACACTGGTATACATGTATGTT 58.748 33.333 25.48 21.79 41.97 2.71
3221 3382 2.295349 CCTGCTTTGCTTCAGTCACAAT 59.705 45.455 0.00 0.00 0.00 2.71
3228 3389 4.979943 TGCTTCAGTCACAATTCACAAA 57.020 36.364 0.00 0.00 0.00 2.83
3250 3411 2.712709 GGTCTTACTTCAAAGGGGAGC 58.287 52.381 0.00 0.00 0.00 4.70
3251 3412 2.306219 GGTCTTACTTCAAAGGGGAGCT 59.694 50.000 0.00 0.00 0.00 4.09
3319 3480 8.971321 CACCACATTTCTTTCTTTTCAGTTATG 58.029 33.333 0.00 0.00 0.00 1.90
3380 3541 8.186178 AGATGTACGATGTGTTTATTTCTGTC 57.814 34.615 0.00 0.00 0.00 3.51
3416 3577 5.127682 ACCTTCAATTCTGTTTGCTTTCAGT 59.872 36.000 0.00 0.00 33.89 3.41
3558 3719 4.141505 ACTTCCTTTTGGGGGTTTGAATTG 60.142 41.667 0.00 0.00 40.87 2.32
3559 3720 2.105649 TCCTTTTGGGGGTTTGAATTGC 59.894 45.455 0.00 0.00 40.87 3.56
3560 3721 2.503331 CTTTTGGGGGTTTGAATTGCC 58.497 47.619 0.00 0.00 0.00 4.52
3561 3722 1.511613 TTTGGGGGTTTGAATTGCCA 58.488 45.000 0.00 0.00 0.00 4.92
3562 3723 0.761802 TTGGGGGTTTGAATTGCCAC 59.238 50.000 0.00 0.00 0.00 5.01
3661 3822 6.534475 AACAACAGGATTATACCTCGTGTA 57.466 37.500 9.18 0.00 39.94 2.90
3666 3827 5.163478 ACAGGATTATACCTCGTGTACAACC 60.163 44.000 0.00 0.00 39.28 3.77
3715 3876 6.715347 AAAGTAACAGGCACAAGAAGAATT 57.285 33.333 0.00 0.00 0.00 2.17
3729 3890 7.013274 CACAAGAAGAATTGAGTGTTTTCCCTA 59.987 37.037 0.00 0.00 34.20 3.53
3742 3903 6.766467 AGTGTTTTCCCTACTTTACAAGTCAG 59.234 38.462 0.00 0.00 41.77 3.51
3779 3940 6.459710 GCAACAAACTTTCCTAGTGTTTAGCT 60.460 38.462 0.00 0.00 37.12 3.32
3960 4122 7.499438 TTTACATGAAAATTTACGGCAATCG 57.501 32.000 0.00 0.00 45.88 3.34
4183 4347 8.475331 AACTCTGGTACACGAAATATAGTTTG 57.525 34.615 0.00 0.00 0.00 2.93
4215 4379 2.364647 GCGTAGGGGCTTAGTGTAGATT 59.635 50.000 0.00 0.00 0.00 2.40
4540 4704 9.530129 GTCAAGTGACTTTATCTTATGTTTTCG 57.470 33.333 0.00 0.00 41.65 3.46
4596 4760 5.760253 AGTAATACATGATGTGCAACTAGGC 59.240 40.000 8.61 0.00 38.04 3.93
4617 4781 3.674753 GCATAGGTTCATGTTTGTTGCAC 59.325 43.478 0.00 0.00 0.00 4.57
4643 4807 3.988517 GCAGTACACTGTCCTGTAAAGAC 59.011 47.826 10.87 0.00 45.45 3.01
4659 4823 9.490379 CCTGTAAAGACATTGTATTATACTCCC 57.510 37.037 3.92 0.00 34.24 4.30
4662 4826 9.708092 GTAAAGACATTGTATTATACTCCCTCC 57.292 37.037 3.92 0.00 0.00 4.30
4663 4827 6.591750 AGACATTGTATTATACTCCCTCCG 57.408 41.667 3.92 0.00 0.00 4.63
4664 4828 6.075984 AGACATTGTATTATACTCCCTCCGT 58.924 40.000 3.92 0.00 0.00 4.69
4665 4829 6.208994 AGACATTGTATTATACTCCCTCCGTC 59.791 42.308 3.92 2.07 0.00 4.79
4666 4830 5.245526 ACATTGTATTATACTCCCTCCGTCC 59.754 44.000 3.92 0.00 0.00 4.79
4667 4831 3.415212 TGTATTATACTCCCTCCGTCCG 58.585 50.000 3.92 0.00 0.00 4.79
4668 4832 1.920610 ATTATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
4669 4833 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
4670 4834 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
4671 4835 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4672 4836 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4673 4837 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4674 4838 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4675 4839 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4676 4840 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4677 4841 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4678 4842 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4679 4843 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4680 4844 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4681 4845 0.643820 CGTCCGGAAATACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
4682 4846 1.717194 GTCCGGAAATACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
4683 4847 1.659098 GTCCGGAAATACTTGTCGCAG 59.341 52.381 5.23 0.00 0.00 5.18
4684 4848 1.546923 TCCGGAAATACTTGTCGCAGA 59.453 47.619 0.00 0.00 0.00 4.26
4685 4849 2.028839 TCCGGAAATACTTGTCGCAGAA 60.029 45.455 0.00 0.00 39.69 3.02
4686 4850 2.739913 CCGGAAATACTTGTCGCAGAAA 59.260 45.455 0.00 0.00 39.69 2.52
4687 4851 3.374058 CCGGAAATACTTGTCGCAGAAAT 59.626 43.478 0.00 0.00 39.69 2.17
4688 4852 4.334443 CGGAAATACTTGTCGCAGAAATG 58.666 43.478 0.00 0.00 39.69 2.32
4689 4853 4.662145 GGAAATACTTGTCGCAGAAATGG 58.338 43.478 0.00 0.00 39.69 3.16
4690 4854 4.394920 GGAAATACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
4691 4855 5.066505 GGAAATACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
4692 4856 6.260050 GGAAATACTTGTCGCAGAAATGGATA 59.740 38.462 0.00 0.00 39.69 2.59
4693 4857 7.041098 GGAAATACTTGTCGCAGAAATGGATAT 60.041 37.037 0.00 0.00 39.69 1.63
4694 4858 8.902540 AAATACTTGTCGCAGAAATGGATATA 57.097 30.769 0.00 0.00 39.69 0.86
4695 4859 8.902540 AATACTTGTCGCAGAAATGGATATAA 57.097 30.769 0.00 0.00 39.69 0.98
4696 4860 8.902540 ATACTTGTCGCAGAAATGGATATAAA 57.097 30.769 0.00 0.00 39.69 1.40
4697 4861 7.807977 ACTTGTCGCAGAAATGGATATAAAT 57.192 32.000 0.00 0.00 39.69 1.40
4698 4862 7.642669 ACTTGTCGCAGAAATGGATATAAATG 58.357 34.615 0.00 0.00 39.69 2.32
4699 4863 6.558771 TGTCGCAGAAATGGATATAAATGG 57.441 37.500 0.00 0.00 39.69 3.16
4700 4864 6.295249 TGTCGCAGAAATGGATATAAATGGA 58.705 36.000 0.00 0.00 39.69 3.41
4701 4865 6.942005 TGTCGCAGAAATGGATATAAATGGAT 59.058 34.615 0.00 0.00 39.69 3.41
4702 4866 7.094677 TGTCGCAGAAATGGATATAAATGGATG 60.095 37.037 0.00 0.00 39.69 3.51
4703 4867 6.032094 CGCAGAAATGGATATAAATGGATGC 58.968 40.000 0.00 0.00 0.00 3.91
4704 4868 6.349528 CGCAGAAATGGATATAAATGGATGCA 60.350 38.462 0.00 0.00 0.00 3.96
4705 4869 7.553334 GCAGAAATGGATATAAATGGATGCAT 58.447 34.615 0.00 0.00 35.84 3.96
4706 4870 7.705325 GCAGAAATGGATATAAATGGATGCATC 59.295 37.037 18.81 18.81 33.50 3.91
4707 4871 8.967918 CAGAAATGGATATAAATGGATGCATCT 58.032 33.333 25.28 8.95 33.50 2.90
4713 4877 9.812347 TGGATATAAATGGATGCATCTAAAACT 57.188 29.630 25.28 9.64 0.00 2.66
4742 4906 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
4743 4907 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
4744 4908 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
4745 4909 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
4746 4910 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
4747 4911 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
4748 4912 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
4749 4913 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
4750 4914 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
4751 4915 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
4752 4916 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
4753 4917 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
4754 4918 5.174037 TCCATTCCTCCGACAAGTATTTT 57.826 39.130 0.00 0.00 0.00 1.82
4755 4919 5.183228 TCCATTCCTCCGACAAGTATTTTC 58.817 41.667 0.00 0.00 0.00 2.29
4756 4920 4.034048 CCATTCCTCCGACAAGTATTTTCG 59.966 45.833 0.00 0.00 0.00 3.46
4762 4926 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
4763 4927 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4764 4928 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4765 4929 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4766 4930 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
4767 4931 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4768 4932 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
4769 4933 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
4770 4934 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
4784 4948 9.322769 ACGGAGGGAGTACTAAAAATATATGAT 57.677 33.333 0.00 0.00 0.00 2.45
4813 4977 3.391506 AGGCCTCAAATTTTGCTTGAC 57.608 42.857 0.00 0.00 0.00 3.18
4870 5034 1.341531 AGTAGCTATGATCGTGCCACC 59.658 52.381 0.00 0.00 0.00 4.61
4956 5120 6.179040 CAGAGAGGTCAAGGATTCAAAGATT 58.821 40.000 0.00 0.00 0.00 2.40
5016 5181 5.104776 TGCCTGAACATAAGATACTTCTGCT 60.105 40.000 0.00 0.00 30.72 4.24
5018 5183 6.986817 GCCTGAACATAAGATACTTCTGCTAA 59.013 38.462 0.00 0.00 30.72 3.09
5019 5184 7.659390 GCCTGAACATAAGATACTTCTGCTAAT 59.341 37.037 0.00 0.00 30.72 1.73
5074 5239 5.183904 AGCCCAAGTAATTCAAAGCAGTTAG 59.816 40.000 0.00 0.00 0.00 2.34
5096 5267 0.824759 AGACGGGATCCTGCTTGTAC 59.175 55.000 21.17 5.57 0.00 2.90
5100 5271 0.179081 GGGATCCTGCTTGTACGACC 60.179 60.000 12.58 0.00 0.00 4.79
5138 5309 7.273712 ACTAGAAAGGTAGGCTATAAAACTGC 58.726 38.462 0.00 0.00 0.00 4.40
5140 5311 6.722328 AGAAAGGTAGGCTATAAAACTGCTT 58.278 36.000 0.00 0.00 0.00 3.91
5194 5365 6.636562 AATCTCATTGGCAGATGATTCTTC 57.363 37.500 11.10 0.00 35.62 2.87
5205 5376 6.093771 GGCAGATGATTCTTCATATCATGACC 59.906 42.308 0.00 0.00 42.73 4.02
5206 5377 6.879993 GCAGATGATTCTTCATATCATGACCT 59.120 38.462 0.00 0.00 42.73 3.85
5207 5378 8.039538 GCAGATGATTCTTCATATCATGACCTA 58.960 37.037 0.00 0.00 42.73 3.08
5235 5406 7.698163 ATGAAGAATATCAGTAGGACCCTTT 57.302 36.000 0.00 0.00 31.76 3.11
5259 5430 4.510340 CACGGATATTAGCAAACCCTACAC 59.490 45.833 0.00 0.00 0.00 2.90
5301 5472 8.675705 TGTACTGATACATTCCATGGTTTATG 57.324 34.615 12.58 15.49 36.34 1.90
5312 5483 4.233632 CATGGTTTATGGGCCCATTTTT 57.766 40.909 41.49 22.11 36.85 1.94
5326 5497 6.051074 GGCCCATTTTTCCTGAGATAATTTG 58.949 40.000 0.00 0.00 0.00 2.32
5366 5537 9.748708 AATTGTACGCATGCAATTTCTTATATT 57.251 25.926 19.57 1.10 45.54 1.28
5402 5573 7.067494 GGTTATGAGGCTGTGAATATGTTCTTT 59.933 37.037 3.72 0.00 35.33 2.52
5405 5576 5.181811 TGAGGCTGTGAATATGTTCTTTGTG 59.818 40.000 3.72 0.00 35.33 3.33
5415 5586 7.286546 TGAATATGTTCTTTGTGGGAAACTGAA 59.713 33.333 3.72 0.00 35.33 3.02
5446 5617 5.560722 TCCAGTAACATTTCTCTTGTGGA 57.439 39.130 0.00 0.00 0.00 4.02
5469 5640 4.082679 ACTGATAGTCGAACAGTTCAGGAC 60.083 45.833 13.82 12.49 41.21 3.85
5565 5736 7.886629 ATATCAATGTTTCATGGTAGCTGTT 57.113 32.000 0.00 0.00 0.00 3.16
5566 5737 6.594788 ATCAATGTTTCATGGTAGCTGTTT 57.405 33.333 0.00 0.00 0.00 2.83
5567 5738 7.701539 ATCAATGTTTCATGGTAGCTGTTTA 57.298 32.000 0.00 0.00 0.00 2.01
5568 5739 6.908825 TCAATGTTTCATGGTAGCTGTTTAC 58.091 36.000 0.00 0.00 0.00 2.01
5569 5740 6.714810 TCAATGTTTCATGGTAGCTGTTTACT 59.285 34.615 0.00 0.00 0.00 2.24
5570 5741 6.743575 ATGTTTCATGGTAGCTGTTTACTC 57.256 37.500 0.00 0.00 0.00 2.59
5640 5811 6.466097 GCTTGTTCACTATTTTGCGTCTAATC 59.534 38.462 0.00 0.00 0.00 1.75
5698 5869 1.053424 TTACCCTCGGCAGTTGAACT 58.947 50.000 0.00 0.00 0.00 3.01
5699 5870 1.053424 TACCCTCGGCAGTTGAACTT 58.947 50.000 0.00 0.00 0.00 2.66
5700 5871 0.535102 ACCCTCGGCAGTTGAACTTG 60.535 55.000 0.00 0.00 0.00 3.16
5701 5872 0.250295 CCCTCGGCAGTTGAACTTGA 60.250 55.000 0.00 0.00 0.00 3.02
5702 5873 1.593196 CCTCGGCAGTTGAACTTGAA 58.407 50.000 0.00 0.00 0.00 2.69
5703 5874 1.264288 CCTCGGCAGTTGAACTTGAAC 59.736 52.381 0.00 0.00 0.00 3.18
5704 5875 1.264288 CTCGGCAGTTGAACTTGAACC 59.736 52.381 0.00 0.00 0.00 3.62
5705 5876 1.021202 CGGCAGTTGAACTTGAACCA 58.979 50.000 0.00 0.00 0.00 3.67
5706 5877 1.403679 CGGCAGTTGAACTTGAACCAA 59.596 47.619 0.00 0.00 0.00 3.67
5707 5878 2.034558 CGGCAGTTGAACTTGAACCAAT 59.965 45.455 0.00 0.00 0.00 3.16
5708 5879 3.383761 GGCAGTTGAACTTGAACCAATG 58.616 45.455 0.00 0.00 0.00 2.82
5709 5880 3.181476 GGCAGTTGAACTTGAACCAATGT 60.181 43.478 0.00 0.00 0.00 2.71
5710 5881 3.798337 GCAGTTGAACTTGAACCAATGTG 59.202 43.478 0.00 0.00 0.00 3.21
5711 5882 3.798337 CAGTTGAACTTGAACCAATGTGC 59.202 43.478 0.00 0.00 0.00 4.57
5712 5883 3.446873 AGTTGAACTTGAACCAATGTGCA 59.553 39.130 0.00 0.00 0.00 4.57
5713 5884 4.099881 AGTTGAACTTGAACCAATGTGCAT 59.900 37.500 0.00 0.00 27.30 3.96
5720 5891 5.477984 ACTTGAACCAATGTGCATCTACAAT 59.522 36.000 0.00 0.00 33.69 2.71
5726 5897 4.340097 CCAATGTGCATCTACAATGGTCAT 59.660 41.667 5.12 0.00 43.48 3.06
5732 5903 4.210331 GCATCTACAATGGTCATTTCCCT 58.790 43.478 0.00 0.00 0.00 4.20
6042 6237 8.585018 TGGAAGAATATATTGCTTACGATGAGA 58.415 33.333 1.78 0.00 0.00 3.27
6130 6326 8.035984 GGGCTGATAAGGTCTTACATATAGTTC 58.964 40.741 0.00 0.00 0.00 3.01
6133 6329 9.632807 CTGATAAGGTCTTACATATAGTTCTGC 57.367 37.037 0.00 0.00 0.00 4.26
6166 6362 6.039382 ACTGAAACTTGGGAATAAAGTGACAC 59.961 38.462 0.00 0.00 37.90 3.67
6234 6430 2.579787 GACCGAGATGGCACGACG 60.580 66.667 0.00 0.00 43.94 5.12
6341 6537 6.937436 TTTCAGTCAAACCTTCTAGTTTCC 57.063 37.500 0.00 0.00 37.87 3.13
6432 6628 6.589523 TGGTGTTAATTGCTTTACATTGATGC 59.410 34.615 0.00 0.00 0.00 3.91
6475 6671 7.607607 ACAGAAGTTGCATAATGATCAACTACA 59.392 33.333 0.00 0.00 46.63 2.74
6524 6722 7.222999 GCCATATAGTTAGTTCAGACAACAGAC 59.777 40.741 0.00 0.00 0.00 3.51
6530 6728 0.874175 TTCAGACAACAGACGCACCG 60.874 55.000 0.00 0.00 0.00 4.94
6536 6734 1.078709 CAACAGACGCACCGATGATT 58.921 50.000 0.00 0.00 0.00 2.57
6622 6821 4.082125 CCAAAAGAAATCCTACAGTGCCT 58.918 43.478 0.00 0.00 0.00 4.75
6644 6844 2.547826 AGGTTAGCTTTTCGCCGTATC 58.452 47.619 0.00 0.00 40.39 2.24
6704 6905 9.793259 TTATCAAAATATCCATACCTTCTGGTC 57.207 33.333 0.00 0.00 44.78 4.02
6706 6907 4.891992 AATATCCATACCTTCTGGTCGG 57.108 45.455 0.00 0.00 44.78 4.79
6750 6951 1.968017 CAAGCCGGAAGAGCAAGCA 60.968 57.895 5.05 0.00 0.00 3.91
6778 6979 7.335924 CCTCCATTATCCGAACTCTTTAACAAA 59.664 37.037 0.00 0.00 0.00 2.83
6812 7013 8.055279 TGATAGAACAAAAATGGATCACCTTC 57.945 34.615 0.00 0.00 37.04 3.46
6817 7018 8.212995 AGAACAAAAATGGATCACCTTCAAATT 58.787 29.630 0.00 0.00 37.04 1.82
6820 7021 7.877612 ACAAAAATGGATCACCTTCAAATTACC 59.122 33.333 0.00 0.00 37.04 2.85
6821 7022 7.797121 AAAATGGATCACCTTCAAATTACCT 57.203 32.000 0.00 0.00 37.04 3.08
6822 7023 7.410120 AAATGGATCACCTTCAAATTACCTC 57.590 36.000 0.00 0.00 37.04 3.85
6823 7024 5.512942 TGGATCACCTTCAAATTACCTCA 57.487 39.130 0.00 0.00 37.04 3.86
6824 7025 5.253330 TGGATCACCTTCAAATTACCTCAC 58.747 41.667 0.00 0.00 37.04 3.51
6825 7026 5.014123 TGGATCACCTTCAAATTACCTCACT 59.986 40.000 0.00 0.00 37.04 3.41
6826 7027 5.355350 GGATCACCTTCAAATTACCTCACTG 59.645 44.000 0.00 0.00 0.00 3.66
6840 7041 5.590530 ACCTCACTGTTCACTCTGATATC 57.409 43.478 0.00 0.00 0.00 1.63
6842 7043 4.336713 CCTCACTGTTCACTCTGATATCGA 59.663 45.833 0.00 0.00 0.00 3.59
6848 7049 3.273919 TCACTCTGATATCGACGCATG 57.726 47.619 0.00 0.00 0.00 4.06
6851 7052 3.423536 CACTCTGATATCGACGCATGTTC 59.576 47.826 0.00 0.00 0.00 3.18
6885 7089 1.252904 AAGTACCGAAGCCTGCCGTA 61.253 55.000 0.00 0.00 0.00 4.02
6947 7151 6.014070 TCACTACCAAGGTTATTCACTTGCTA 60.014 38.462 0.00 0.00 42.01 3.49
6983 7187 1.801242 TTGCGATCCCTTCCCATCTA 58.199 50.000 0.00 0.00 0.00 1.98
6984 7188 1.801242 TGCGATCCCTTCCCATCTAA 58.199 50.000 0.00 0.00 0.00 2.10
6985 7189 2.338809 TGCGATCCCTTCCCATCTAAT 58.661 47.619 0.00 0.00 0.00 1.73
6986 7190 2.303022 TGCGATCCCTTCCCATCTAATC 59.697 50.000 0.00 0.00 0.00 1.75
7016 7220 8.862325 TTCAAAGTGCTGAAATATCTCCTTTA 57.138 30.769 0.00 0.00 32.39 1.85
7177 7381 8.035394 TGCATTTACAACCTCACACTTTTTAAA 58.965 29.630 0.00 0.00 0.00 1.52
7209 7413 5.701290 CAGACCGACTTTAGTCAGGAAAAAT 59.299 40.000 20.05 4.95 44.99 1.82
7311 7529 8.464404 TCATGATTGATTCCATTTCTTCTTCAC 58.536 33.333 0.00 0.00 0.00 3.18
7315 7533 4.695455 TGATTCCATTTCTTCTTCACGACC 59.305 41.667 0.00 0.00 0.00 4.79
7316 7534 2.683968 TCCATTTCTTCTTCACGACCG 58.316 47.619 0.00 0.00 0.00 4.79
7331 7549 1.201987 CGACCGCAAGAATTTAACCGG 60.202 52.381 0.00 0.00 41.31 5.28
7371 7589 2.931512 TTAATTGGCGCAACCTTAGC 57.068 45.000 10.83 0.00 40.22 3.09
7374 7592 2.051334 ATTGGCGCAACCTTAGCATA 57.949 45.000 10.83 0.00 40.22 3.14
7376 7594 2.051334 TGGCGCAACCTTAGCATAAT 57.949 45.000 10.83 0.00 40.22 1.28
7377 7595 2.374184 TGGCGCAACCTTAGCATAATT 58.626 42.857 10.83 0.00 40.22 1.40
7380 7598 3.551485 GGCGCAACCTTAGCATAATTTTG 59.449 43.478 10.83 0.00 34.51 2.44
7381 7599 4.173256 GCGCAACCTTAGCATAATTTTGT 58.827 39.130 0.30 0.00 0.00 2.83
7382 7600 5.336744 GCGCAACCTTAGCATAATTTTGTA 58.663 37.500 0.30 0.00 0.00 2.41
7383 7601 5.229260 GCGCAACCTTAGCATAATTTTGTAC 59.771 40.000 0.30 0.00 0.00 2.90
7406 7625 4.851558 CCAAAGTTATGCTAAAACTGCGTC 59.148 41.667 0.67 0.00 37.26 5.19
7407 7626 5.448438 CAAAGTTATGCTAAAACTGCGTCA 58.552 37.500 0.67 0.00 37.26 4.35
7424 7643 4.578516 TGCGTCAATTAATTTGGATCGGAT 59.421 37.500 0.00 0.00 35.92 4.18
7517 7736 2.512692 TGCATATTGACACTGCCCTT 57.487 45.000 0.00 0.00 35.02 3.95
7561 7780 4.120589 GCGTCTAATTTTGGAGAGTAGGG 58.879 47.826 0.00 0.00 0.00 3.53
7562 7781 4.382793 GCGTCTAATTTTGGAGAGTAGGGT 60.383 45.833 0.00 0.00 0.00 4.34
7599 7819 4.870426 GTCTAACAAGATGGATGAAGCGAA 59.130 41.667 0.00 0.00 0.00 4.70
7618 7838 3.717404 CGAAACATTATTCGCCGTTAAGC 59.283 43.478 0.00 0.00 44.69 3.09
7619 7839 4.493545 CGAAACATTATTCGCCGTTAAGCT 60.494 41.667 0.00 0.00 44.69 3.74
7658 7878 1.153958 GCATCGGCCAGTTTTCAGC 60.154 57.895 2.24 0.00 0.00 4.26
7659 7879 1.865788 GCATCGGCCAGTTTTCAGCA 61.866 55.000 2.24 0.00 0.00 4.41
7686 7906 0.745845 CCAGAGACCAGCCCGATTTG 60.746 60.000 0.00 0.00 0.00 2.32
7729 7949 1.278238 CGGCTTAACGTAGCTCCTTG 58.722 55.000 10.03 0.00 40.99 3.61
7759 7979 2.893895 CGTCCCGGAGATCGTCGA 60.894 66.667 0.73 0.00 37.11 4.20
7760 7980 2.466982 CGTCCCGGAGATCGTCGAA 61.467 63.158 0.73 0.00 37.11 3.71
7797 8017 3.018423 AGAGAAGCAAAACAACCCAGT 57.982 42.857 0.00 0.00 0.00 4.00
7831 8061 0.693049 ATTGTTGGGGAGAGCGACTT 59.307 50.000 0.00 0.00 0.00 3.01
7847 8077 1.623811 GACTTGCCTTACCTGACCTGA 59.376 52.381 0.00 0.00 0.00 3.86
7848 8078 1.348036 ACTTGCCTTACCTGACCTGAC 59.652 52.381 0.00 0.00 0.00 3.51
7849 8079 0.690762 TTGCCTTACCTGACCTGACC 59.309 55.000 0.00 0.00 0.00 4.02
7850 8080 0.178903 TGCCTTACCTGACCTGACCT 60.179 55.000 0.00 0.00 0.00 3.85
7851 8081 0.250513 GCCTTACCTGACCTGACCTG 59.749 60.000 0.00 0.00 0.00 4.00
7852 8082 1.938585 CCTTACCTGACCTGACCTGA 58.061 55.000 0.00 0.00 0.00 3.86
7853 8083 1.550976 CCTTACCTGACCTGACCTGAC 59.449 57.143 0.00 0.00 0.00 3.51
7854 8084 1.550976 CTTACCTGACCTGACCTGACC 59.449 57.143 0.00 0.00 0.00 4.02
7855 8085 0.784495 TACCTGACCTGACCTGACCT 59.216 55.000 0.00 0.00 0.00 3.85
7856 8086 0.833834 ACCTGACCTGACCTGACCTG 60.834 60.000 0.00 0.00 0.00 4.00
7902 8132 1.730547 GTAACGACGACACCACCGG 60.731 63.158 0.00 0.00 0.00 5.28
7903 8133 2.192861 TAACGACGACACCACCGGT 61.193 57.895 0.00 0.00 35.62 5.28
7904 8134 1.733402 TAACGACGACACCACCGGTT 61.733 55.000 2.97 0.00 31.02 4.44
7909 8139 0.812412 ACGACACCACCGGTTCAAAG 60.812 55.000 2.97 0.00 31.02 2.77
7937 8167 1.847999 CAAAGTTGTTCGCTTGCTGTG 59.152 47.619 0.00 0.00 0.00 3.66
7960 8190 2.460669 GCATTGATCCCCCAGTTTTCT 58.539 47.619 0.00 0.00 0.00 2.52
7961 8191 2.833943 GCATTGATCCCCCAGTTTTCTT 59.166 45.455 0.00 0.00 0.00 2.52
7962 8192 3.368739 GCATTGATCCCCCAGTTTTCTTG 60.369 47.826 0.00 0.00 0.00 3.02
7964 8194 2.875296 TGATCCCCCAGTTTTCTTGTG 58.125 47.619 0.00 0.00 0.00 3.33
7973 8208 0.594796 GTTTTCTTGTGTGCCCTGCG 60.595 55.000 0.00 0.00 0.00 5.18
8006 8244 1.024271 TAGTTTCCCGGGTCGTATCG 58.976 55.000 22.86 0.00 0.00 2.92
8020 8258 4.280461 GTCGTATCGTGAATGAATCTCGT 58.720 43.478 0.00 0.00 43.59 4.18
8021 8259 4.144902 GTCGTATCGTGAATGAATCTCGTG 59.855 45.833 0.00 0.00 43.59 4.35
8023 8261 4.086075 CGTATCGTGAATGAATCTCGTGTG 60.086 45.833 0.00 0.00 43.59 3.82
8025 8263 3.242518 TCGTGAATGAATCTCGTGTGAC 58.757 45.455 0.00 0.00 43.59 3.67
8041 8279 0.319900 TGACGAAGCTGCCAACTCTC 60.320 55.000 0.00 0.00 0.00 3.20
8044 8282 1.075425 CGAAGCTGCCAACTCTCGAG 61.075 60.000 5.93 5.93 0.00 4.04
8048 8286 1.357991 GCTGCCAACTCTCGAGAAGC 61.358 60.000 17.36 16.80 0.00 3.86
8049 8287 1.075425 CTGCCAACTCTCGAGAAGCG 61.075 60.000 17.36 7.62 42.69 4.68
8050 8288 2.448705 GCCAACTCTCGAGAAGCGC 61.449 63.158 17.36 11.58 40.61 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.443957 CTTTTCCGTCACCTGCGTGC 62.444 60.000 0.00 0.00 40.04 5.34
3 4 1.569493 CTTTTCCGTCACCTGCGTG 59.431 57.895 0.00 0.00 41.72 5.34
4 5 2.251642 GCTTTTCCGTCACCTGCGT 61.252 57.895 0.00 0.00 0.00 5.24
5 6 2.556287 GCTTTTCCGTCACCTGCG 59.444 61.111 0.00 0.00 0.00 5.18
6 7 2.626780 GGGCTTTTCCGTCACCTGC 61.627 63.158 0.00 0.00 34.94 4.85
7 8 2.325082 CGGGCTTTTCCGTCACCTG 61.325 63.158 0.00 0.00 44.60 4.00
8 9 2.032071 CGGGCTTTTCCGTCACCT 59.968 61.111 0.00 0.00 44.60 4.00
31 32 4.729918 CTGGGCTGGCTGGTGGTC 62.730 72.222 0.00 0.00 0.00 4.02
33 34 4.729918 GTCTGGGCTGGCTGGTGG 62.730 72.222 0.00 0.00 0.00 4.61
34 35 4.729918 GGTCTGGGCTGGCTGGTG 62.730 72.222 0.00 0.00 0.00 4.17
45 46 4.436998 GTGACGGAGCGGGTCTGG 62.437 72.222 19.25 8.74 35.59 3.86
46 47 2.507110 AATGTGACGGAGCGGGTCTG 62.507 60.000 14.17 14.17 37.60 3.51
47 48 2.227089 GAATGTGACGGAGCGGGTCT 62.227 60.000 7.19 0.00 35.45 3.85
48 49 1.810030 GAATGTGACGGAGCGGGTC 60.810 63.158 0.00 0.00 34.99 4.46
49 50 2.227089 GAGAATGTGACGGAGCGGGT 62.227 60.000 0.00 0.00 0.00 5.28
50 51 1.519455 GAGAATGTGACGGAGCGGG 60.519 63.158 0.00 0.00 0.00 6.13
51 52 1.519455 GGAGAATGTGACGGAGCGG 60.519 63.158 0.00 0.00 0.00 5.52
52 53 1.078759 GTGGAGAATGTGACGGAGCG 61.079 60.000 0.00 0.00 0.00 5.03
53 54 1.078759 CGTGGAGAATGTGACGGAGC 61.079 60.000 0.00 0.00 0.00 4.70
54 55 1.078759 GCGTGGAGAATGTGACGGAG 61.079 60.000 0.00 0.00 32.45 4.63
55 56 1.080093 GCGTGGAGAATGTGACGGA 60.080 57.895 0.00 0.00 32.45 4.69
56 57 2.444624 CGCGTGGAGAATGTGACGG 61.445 63.158 0.00 0.00 32.45 4.79
57 58 0.455464 TACGCGTGGAGAATGTGACG 60.455 55.000 24.59 0.00 34.93 4.35
58 59 1.852895 GATACGCGTGGAGAATGTGAC 59.147 52.381 24.59 0.00 0.00 3.67
59 60 1.533129 CGATACGCGTGGAGAATGTGA 60.533 52.381 24.59 0.00 34.64 3.58
60 61 0.846401 CGATACGCGTGGAGAATGTG 59.154 55.000 24.59 0.00 34.64 3.21
61 62 3.251817 CGATACGCGTGGAGAATGT 57.748 52.632 24.59 0.00 34.64 2.71
72 73 3.437395 AGGAGATACATCAGACGATACGC 59.563 47.826 0.00 0.00 0.00 4.42
73 74 4.201637 CGAGGAGATACATCAGACGATACG 60.202 50.000 0.00 0.00 0.00 3.06
74 75 4.436317 GCGAGGAGATACATCAGACGATAC 60.436 50.000 0.00 0.00 0.00 2.24
75 76 3.685272 GCGAGGAGATACATCAGACGATA 59.315 47.826 0.00 0.00 0.00 2.92
76 77 2.486203 GCGAGGAGATACATCAGACGAT 59.514 50.000 0.00 0.00 0.00 3.73
77 78 1.874231 GCGAGGAGATACATCAGACGA 59.126 52.381 0.00 0.00 0.00 4.20
78 79 1.604278 TGCGAGGAGATACATCAGACG 59.396 52.381 0.00 0.00 0.00 4.18
79 80 2.881513 TCTGCGAGGAGATACATCAGAC 59.118 50.000 0.00 0.00 0.00 3.51
87 88 1.528542 CCGGGTCTGCGAGGAGATA 60.529 63.158 0.00 0.00 0.00 1.98
163 172 8.522003 TGTAGTACGAAGGAAAATGTATGTGTA 58.478 33.333 0.00 0.00 0.00 2.90
186 195 4.321750 GCTTGCTCCAGTTGTACTACTGTA 60.322 45.833 27.91 16.84 43.17 2.74
187 196 3.555168 GCTTGCTCCAGTTGTACTACTGT 60.555 47.826 27.91 0.63 43.17 3.55
188 197 2.996621 GCTTGCTCCAGTTGTACTACTG 59.003 50.000 24.95 24.95 44.07 2.74
189 198 2.352814 CGCTTGCTCCAGTTGTACTACT 60.353 50.000 3.98 3.98 0.00 2.57
190 199 1.993370 CGCTTGCTCCAGTTGTACTAC 59.007 52.381 0.00 0.00 0.00 2.73
191 200 1.671850 GCGCTTGCTCCAGTTGTACTA 60.672 52.381 0.00 0.00 35.07 1.82
392 417 1.366111 GGACGGGCGTACACGTAGTA 61.366 60.000 7.15 0.00 41.61 1.82
421 446 1.990563 CGTATTCGCTCGAGGTTTTGT 59.009 47.619 15.58 0.00 0.00 2.83
422 447 2.027688 GTCGTATTCGCTCGAGGTTTTG 59.972 50.000 15.58 0.00 36.76 2.44
423 448 2.094854 AGTCGTATTCGCTCGAGGTTTT 60.095 45.455 15.58 0.00 36.76 2.43
424 449 1.471684 AGTCGTATTCGCTCGAGGTTT 59.528 47.619 15.58 0.04 36.76 3.27
425 450 1.093159 AGTCGTATTCGCTCGAGGTT 58.907 50.000 15.58 0.36 36.76 3.50
426 451 1.063764 GAAGTCGTATTCGCTCGAGGT 59.936 52.381 15.58 0.00 36.76 3.85
474 548 7.148573 CCAGACAATAAATGTATATCGCTGGAC 60.149 40.741 0.00 0.00 43.89 4.02
475 549 6.873605 CCAGACAATAAATGTATATCGCTGGA 59.126 38.462 0.00 0.00 43.89 3.86
477 551 7.889589 TCCAGACAATAAATGTATATCGCTG 57.110 36.000 0.00 0.00 44.12 5.18
479 553 9.546909 CAAATCCAGACAATAAATGTATATCGC 57.453 33.333 0.00 0.00 44.12 4.58
497 577 2.159653 CCGCGAAGAGAAACAAATCCAG 60.160 50.000 8.23 0.00 0.00 3.86
509 589 1.658717 CTCGTATGGCCGCGAAGAG 60.659 63.158 8.23 0.00 36.65 2.85
512 592 4.884257 GCCTCGTATGGCCGCGAA 62.884 66.667 8.23 0.00 46.82 4.70
618 699 1.666553 TAAACCTCGCGTGTGCAGG 60.667 57.895 5.77 7.75 42.97 4.85
625 706 0.179145 CCGATCTGTAAACCTCGCGT 60.179 55.000 5.77 0.00 0.00 6.01
644 725 0.247736 ATTCGGCAGTGACTGAGGAC 59.752 55.000 18.18 1.95 32.44 3.85
645 726 0.976641 AATTCGGCAGTGACTGAGGA 59.023 50.000 18.18 9.32 32.44 3.71
648 729 3.231734 CCAATTCGGCAGTGACTGA 57.768 52.632 18.18 0.00 32.44 3.41
690 771 4.688419 CCAAACAGCGCTGGCACG 62.688 66.667 38.27 23.42 43.41 5.34
691 772 2.627510 AAACCAAACAGCGCTGGCAC 62.628 55.000 38.27 0.00 43.41 5.01
699 789 1.021968 ACTCCACGAAACCAAACAGC 58.978 50.000 0.00 0.00 0.00 4.40
707 797 2.484264 CCCTCATTTCACTCCACGAAAC 59.516 50.000 0.00 0.00 35.31 2.78
708 798 2.370519 TCCCTCATTTCACTCCACGAAA 59.629 45.455 0.00 0.00 36.83 3.46
709 799 1.974957 TCCCTCATTTCACTCCACGAA 59.025 47.619 0.00 0.00 0.00 3.85
715 805 3.604582 CTGTCCTTCCCTCATTTCACTC 58.395 50.000 0.00 0.00 0.00 3.51
725 815 2.936032 GCACCCCTGTCCTTCCCT 60.936 66.667 0.00 0.00 0.00 4.20
860 950 1.396594 GGAGGAGGAAGGAAGGGGA 59.603 63.158 0.00 0.00 0.00 4.81
861 951 2.066999 CGGAGGAGGAAGGAAGGGG 61.067 68.421 0.00 0.00 0.00 4.79
862 952 2.736826 GCGGAGGAGGAAGGAAGGG 61.737 68.421 0.00 0.00 0.00 3.95
895 985 2.357517 CGAGGTGCTTGTTCGGCT 60.358 61.111 0.00 0.00 0.00 5.52
896 986 4.090057 GCGAGGTGCTTGTTCGGC 62.090 66.667 0.00 0.00 41.73 5.54
1088 1182 1.546961 GTCCTTCTCTTCGTCCTCCA 58.453 55.000 0.00 0.00 0.00 3.86
1094 1194 1.228800 ACCCCGTCCTTCTCTTCGT 60.229 57.895 0.00 0.00 0.00 3.85
1095 1195 1.215647 CACCCCGTCCTTCTCTTCG 59.784 63.158 0.00 0.00 0.00 3.79
1098 1198 0.978146 CCATCACCCCGTCCTTCTCT 60.978 60.000 0.00 0.00 0.00 3.10
1100 1200 1.229529 ACCATCACCCCGTCCTTCT 60.230 57.895 0.00 0.00 0.00 2.85
1312 1440 0.671781 CAGAGCAGGGAAACACGGAG 60.672 60.000 0.00 0.00 0.00 4.63
1324 1452 0.247460 TGGAATCGTGGACAGAGCAG 59.753 55.000 0.00 0.00 0.00 4.24
1325 1453 0.247460 CTGGAATCGTGGACAGAGCA 59.753 55.000 0.00 0.00 32.86 4.26
1326 1454 0.532573 TCTGGAATCGTGGACAGAGC 59.467 55.000 0.00 0.00 35.24 4.09
1327 1455 3.319137 TTTCTGGAATCGTGGACAGAG 57.681 47.619 0.00 0.00 40.63 3.35
1328 1456 3.981071 ATTTCTGGAATCGTGGACAGA 57.019 42.857 0.00 0.00 38.12 3.41
1329 1457 4.935205 TGTAATTTCTGGAATCGTGGACAG 59.065 41.667 0.00 0.00 0.00 3.51
1330 1458 4.900684 TGTAATTTCTGGAATCGTGGACA 58.099 39.130 0.00 0.00 0.00 4.02
1331 1459 5.007724 GGATGTAATTTCTGGAATCGTGGAC 59.992 44.000 0.00 0.00 0.00 4.02
1354 1482 3.164358 CGCAATCGATCGAGTATACTGG 58.836 50.000 23.84 9.56 38.10 4.00
1387 1517 1.131126 GTCAATCAATCTGCACACGGG 59.869 52.381 0.00 0.00 0.00 5.28
1389 1519 1.787989 GCGTCAATCAATCTGCACACG 60.788 52.381 0.00 0.00 0.00 4.49
1390 1520 1.466360 GGCGTCAATCAATCTGCACAC 60.466 52.381 0.00 0.00 0.00 3.82
1393 1523 1.338960 TGAGGCGTCAATCAATCTGCA 60.339 47.619 6.64 0.00 0.00 4.41
1396 1526 1.945394 GCATGAGGCGTCAATCAATCT 59.055 47.619 13.87 0.00 35.88 2.40
1399 1529 0.035152 AGGCATGAGGCGTCAATCAA 60.035 50.000 13.87 0.00 46.16 2.57
1452 1585 5.531122 TCCTACTAAATCCATCGAGTTGG 57.469 43.478 0.00 0.00 36.51 3.77
1457 1590 7.270047 ACGAAATTTCCTACTAAATCCATCGA 58.730 34.615 12.54 0.00 35.35 3.59
1503 1639 0.826672 AGGGGGAATACGCTACTCCG 60.827 60.000 0.00 0.00 0.00 4.63
1521 1657 1.132643 AGCGACGCTAGTACTTGGAAG 59.867 52.381 23.15 0.00 36.99 3.46
1531 1667 3.921021 CCAAATAGGAATAGCGACGCTAG 59.079 47.826 30.89 15.80 41.72 3.42
1605 1741 7.060421 GGGGTCAGAGAATTACAATAAATGGA 58.940 38.462 0.00 0.00 0.00 3.41
1763 1908 8.536175 TCCATGTTATGTACTGACAAATACTCA 58.464 33.333 0.00 0.00 39.59 3.41
1771 1916 6.710295 GCCAATATCCATGTTATGTACTGACA 59.290 38.462 0.00 0.00 40.72 3.58
1780 1925 4.005650 CTCGCAGCCAATATCCATGTTAT 58.994 43.478 0.00 0.00 0.00 1.89
1784 1929 0.520404 GCTCGCAGCCAATATCCATG 59.480 55.000 0.00 0.00 34.48 3.66
1822 1973 2.806434 TCTACCACCAATTGCAATGCT 58.194 42.857 13.82 0.00 0.00 3.79
1853 2004 2.768022 CCATCAACCCCTAGCCCCC 61.768 68.421 0.00 0.00 0.00 5.40
1865 2016 2.622942 GGCTTGTTTGTCTGACCATCAA 59.377 45.455 5.17 5.41 0.00 2.57
1871 2022 2.221055 CGTAGTGGCTTGTTTGTCTGAC 59.779 50.000 0.00 0.00 0.00 3.51
1897 2052 8.202461 TCTTCTGTCAGGAAAATAAGAGGTTA 57.798 34.615 0.00 0.00 0.00 2.85
1918 2073 7.542025 AGGCATCAATAACACATTTCTTCTTC 58.458 34.615 0.00 0.00 0.00 2.87
1952 2107 3.374220 TTTGCACTTCATCAGGCTTTG 57.626 42.857 0.00 0.00 0.00 2.77
2003 2158 8.528044 AGAAGTATGGAAGTAACCAAAACAAA 57.472 30.769 0.00 0.00 43.47 2.83
2021 2178 8.421784 TGCTCGTTAGGATGATTTTAGAAGTAT 58.578 33.333 0.00 0.00 0.00 2.12
2035 2192 4.563140 TTACCCTTTTGCTCGTTAGGAT 57.437 40.909 0.00 0.00 0.00 3.24
2053 2210 6.451064 AGCAAGCACTAATTATGGGTTTAC 57.549 37.500 0.00 0.00 0.00 2.01
2112 2269 7.061094 GTGTTTGCAGTAGATGAAATGTAAAGC 59.939 37.037 0.00 0.00 29.78 3.51
2113 2270 8.292448 AGTGTTTGCAGTAGATGAAATGTAAAG 58.708 33.333 0.00 0.00 29.78 1.85
2121 2278 7.977789 TCATTTAGTGTTTGCAGTAGATGAA 57.022 32.000 11.01 0.47 43.32 2.57
2175 2332 9.851686 ATATAGATCAACAGATGTGGCTAAAAA 57.148 29.630 0.00 0.00 0.00 1.94
2176 2333 9.276590 CATATAGATCAACAGATGTGGCTAAAA 57.723 33.333 0.00 0.00 0.00 1.52
2367 2525 4.022849 GCAACTGTGATGCTTCTTAGGTTT 60.023 41.667 0.88 0.00 40.64 3.27
2421 2579 1.873591 GCACCAGAACAACGTTGAGAT 59.126 47.619 33.66 18.82 0.00 2.75
2432 2590 3.119495 ACTTTGTTCAGTTGCACCAGAAC 60.119 43.478 11.81 11.81 40.45 3.01
2622 2781 9.472361 AAATTATTTGATATGCAATGCTCTGTC 57.528 29.630 6.82 2.67 36.15 3.51
2699 2858 9.807649 GCTAAATTCCAGAATGATAAACAACAT 57.192 29.630 0.00 0.00 39.69 2.71
2700 2859 8.250332 GGCTAAATTCCAGAATGATAAACAACA 58.750 33.333 0.00 0.00 39.69 3.33
2701 2860 8.470002 AGGCTAAATTCCAGAATGATAAACAAC 58.530 33.333 0.00 0.00 39.69 3.32
2702 2861 8.469200 CAGGCTAAATTCCAGAATGATAAACAA 58.531 33.333 0.00 0.00 39.69 2.83
2703 2862 7.416664 GCAGGCTAAATTCCAGAATGATAAACA 60.417 37.037 0.00 0.00 39.69 2.83
2704 2863 6.920210 GCAGGCTAAATTCCAGAATGATAAAC 59.080 38.462 0.00 0.00 39.69 2.01
2705 2864 6.040842 GGCAGGCTAAATTCCAGAATGATAAA 59.959 38.462 0.00 0.00 39.69 1.40
2706 2865 5.536161 GGCAGGCTAAATTCCAGAATGATAA 59.464 40.000 0.00 0.00 39.69 1.75
2707 2866 5.072741 GGCAGGCTAAATTCCAGAATGATA 58.927 41.667 0.00 0.00 39.69 2.15
2708 2867 3.893813 GGCAGGCTAAATTCCAGAATGAT 59.106 43.478 0.00 0.00 39.69 2.45
2709 2868 3.290710 GGCAGGCTAAATTCCAGAATGA 58.709 45.455 0.00 0.00 39.69 2.57
2710 2869 3.025978 TGGCAGGCTAAATTCCAGAATG 58.974 45.455 0.00 0.00 0.00 2.67
2711 2870 3.386932 TGGCAGGCTAAATTCCAGAAT 57.613 42.857 0.00 0.00 0.00 2.40
2737 2896 1.002502 GGGACGGGGAAAAGACAGG 60.003 63.158 0.00 0.00 0.00 4.00
2751 2910 8.831715 AACAATTACATTTCATGAAAAGGGAC 57.168 30.769 23.91 0.00 32.96 4.46
2788 2949 1.529865 GGTATCCGTCCTATTTTGCGC 59.470 52.381 0.00 0.00 0.00 6.09
2800 2961 2.490933 GCTCCATAGCTCGGTATCCGT 61.491 57.143 8.03 0.00 45.85 4.69
2828 2989 3.362986 CGAGTGACAGGTTTTCGTTCATG 60.363 47.826 0.00 0.00 0.00 3.07
2868 3029 2.041216 AGTGTGGACCCCTTGGATAAAC 59.959 50.000 0.00 0.00 34.81 2.01
2872 3033 0.475632 TCAGTGTGGACCCCTTGGAT 60.476 55.000 0.00 0.00 34.81 3.41
2949 3110 2.715046 AGGAGTCGACATACGGTACAA 58.285 47.619 19.50 0.00 42.82 2.41
3069 3230 6.664428 AAATTGCTAGTGTGGTTGGTAAAT 57.336 33.333 0.00 0.00 0.00 1.40
3094 3255 5.480422 ACCACATGAGTAACAGAGACATACA 59.520 40.000 0.00 0.00 0.00 2.29
3103 3264 6.655003 AGGTGAATAAACCACATGAGTAACAG 59.345 38.462 0.00 0.00 43.20 3.16
3106 3267 6.539173 ACAGGTGAATAAACCACATGAGTAA 58.461 36.000 13.62 0.00 45.75 2.24
3195 3356 1.321474 CTGAAGCAAAGCAGGAACCA 58.679 50.000 0.00 0.00 0.00 3.67
3221 3382 5.065474 CCTTTGAAGTAAGACCGTTTGTGAA 59.935 40.000 0.00 0.00 0.00 3.18
3228 3389 2.302157 CTCCCCTTTGAAGTAAGACCGT 59.698 50.000 0.00 0.00 0.00 4.83
3319 3480 7.272978 TCCTAGATTCAATGTAGTACAAAGGC 58.727 38.462 7.16 0.00 0.00 4.35
3380 3541 7.099764 ACAGAATTGAAGGTCACACAGTATAG 58.900 38.462 0.00 0.00 0.00 1.31
3560 3721 4.270808 GCTGAAAACAAAACCCAAGATGTG 59.729 41.667 0.00 0.00 0.00 3.21
3561 3722 4.441792 GCTGAAAACAAAACCCAAGATGT 58.558 39.130 0.00 0.00 0.00 3.06
3562 3723 3.809279 GGCTGAAAACAAAACCCAAGATG 59.191 43.478 0.00 0.00 0.00 2.90
3641 3802 6.335777 GTTGTACACGAGGTATAATCCTGTT 58.664 40.000 0.00 0.00 35.83 3.16
3649 3810 6.100404 ACAAAAGGTTGTACACGAGGTATA 57.900 37.500 0.00 0.00 46.33 1.47
3661 3822 5.964539 GCTAAGTGCATTGACAAAAGGTTGT 60.965 40.000 0.00 0.00 45.44 3.32
3742 3903 3.197265 AGTTTGTTGCCACAATTCAAGC 58.803 40.909 3.93 0.00 42.66 4.01
3844 4006 5.352284 CACAAATAATCTCACGAGCTACCT 58.648 41.667 0.00 0.00 0.00 3.08
3960 4122 6.312918 TGTCATTTTCGCTGGAAGATAACTAC 59.687 38.462 0.00 0.00 34.07 2.73
4094 4258 6.014840 AGCATTTTCAGTTCAAGTCATGGATT 60.015 34.615 0.00 0.00 0.00 3.01
4183 4347 1.067071 GCCCCTACGCATATACTGGAC 60.067 57.143 0.00 0.00 0.00 4.02
4215 4379 2.063015 ATGACGACCAGGGGCACAAA 62.063 55.000 0.00 0.00 0.00 2.83
4330 4494 6.659242 CCAAAATAAAAGGTAGCTTCAGGAGA 59.341 38.462 7.80 0.00 0.00 3.71
4333 4497 6.590234 ACCAAAATAAAAGGTAGCTTCAGG 57.410 37.500 7.80 5.28 32.92 3.86
4521 4685 8.193250 TGCTACCGAAAACATAAGATAAAGTC 57.807 34.615 0.00 0.00 0.00 3.01
4540 4704 5.675538 AGAAGGACAATCAAGTATGCTACC 58.324 41.667 0.00 0.00 0.00 3.18
4595 4759 3.674753 GTGCAACAAACATGAACCTATGC 59.325 43.478 0.00 3.52 36.32 3.14
4596 4760 5.048504 AGAGTGCAACAAACATGAACCTATG 60.049 40.000 0.00 0.00 41.43 2.23
4643 4807 5.621555 CGGACGGAGGGAGTATAATACAATG 60.622 48.000 0.00 0.00 0.00 2.82
4654 4818 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4655 4819 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4656 4820 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4657 4821 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4658 4822 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4659 4823 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4660 4824 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4661 4825 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4662 4826 0.643820 GCGACAAGTATTTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
4663 4827 1.659098 CTGCGACAAGTATTTCCGGAC 59.341 52.381 1.83 0.00 0.00 4.79
4664 4828 1.546923 TCTGCGACAAGTATTTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
4665 4829 2.004583 TCTGCGACAAGTATTTCCGG 57.995 50.000 0.00 0.00 0.00 5.14
4666 4830 4.334443 CATTTCTGCGACAAGTATTTCCG 58.666 43.478 0.00 0.00 0.00 4.30
4667 4831 4.394920 TCCATTTCTGCGACAAGTATTTCC 59.605 41.667 0.00 0.00 0.00 3.13
4668 4832 5.545658 TCCATTTCTGCGACAAGTATTTC 57.454 39.130 0.00 0.00 0.00 2.17
4669 4833 7.807977 ATATCCATTTCTGCGACAAGTATTT 57.192 32.000 0.00 0.00 0.00 1.40
4670 4834 8.902540 TTATATCCATTTCTGCGACAAGTATT 57.097 30.769 0.00 0.00 0.00 1.89
4671 4835 8.902540 TTTATATCCATTTCTGCGACAAGTAT 57.097 30.769 0.00 0.00 0.00 2.12
4672 4836 8.773645 CATTTATATCCATTTCTGCGACAAGTA 58.226 33.333 0.00 0.00 0.00 2.24
4673 4837 7.255242 CCATTTATATCCATTTCTGCGACAAGT 60.255 37.037 0.00 0.00 0.00 3.16
4674 4838 7.041167 TCCATTTATATCCATTTCTGCGACAAG 60.041 37.037 0.00 0.00 0.00 3.16
4675 4839 6.770303 TCCATTTATATCCATTTCTGCGACAA 59.230 34.615 0.00 0.00 0.00 3.18
4676 4840 6.295249 TCCATTTATATCCATTTCTGCGACA 58.705 36.000 0.00 0.00 0.00 4.35
4677 4841 6.801539 TCCATTTATATCCATTTCTGCGAC 57.198 37.500 0.00 0.00 0.00 5.19
4678 4842 6.127925 GCATCCATTTATATCCATTTCTGCGA 60.128 38.462 0.00 0.00 0.00 5.10
4679 4843 6.032094 GCATCCATTTATATCCATTTCTGCG 58.968 40.000 0.00 0.00 0.00 5.18
4680 4844 6.927416 TGCATCCATTTATATCCATTTCTGC 58.073 36.000 0.00 0.00 0.00 4.26
4681 4845 8.967918 AGATGCATCCATTTATATCCATTTCTG 58.032 33.333 23.06 0.00 0.00 3.02
4687 4851 9.812347 AGTTTTAGATGCATCCATTTATATCCA 57.188 29.630 23.06 0.00 0.00 3.41
4716 4880 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
4717 4881 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
4718 4882 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
4719 4883 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
4720 4884 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
4721 4885 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
4722 4886 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
4723 4887 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
4724 4888 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
4725 4889 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
4726 4890 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
4727 4891 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
4728 4892 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
4729 4893 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
4730 4894 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
4731 4895 5.373812 AAATACTTGTCGGAGGAATGGAT 57.626 39.130 0.00 0.00 0.00 3.41
4732 4896 4.837093 AAATACTTGTCGGAGGAATGGA 57.163 40.909 0.00 0.00 0.00 3.41
4733 4897 4.034048 CGAAAATACTTGTCGGAGGAATGG 59.966 45.833 0.00 0.00 0.00 3.16
4734 4898 5.143916 CGAAAATACTTGTCGGAGGAATG 57.856 43.478 0.00 0.00 0.00 2.67
4742 4906 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
4743 4907 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4744 4908 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4745 4909 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4746 4910 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4747 4911 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4748 4912 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4749 4913 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4750 4914 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
4751 4915 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
4752 4916 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
4753 4917 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
4754 4918 0.911769 TTAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
4755 4919 1.755179 TTTAGTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
4756 4920 4.750021 ATTTTTAGTACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
4757 4921 8.800332 TCATATATTTTTAGTACTCCCTCCGTC 58.200 37.037 0.00 0.00 0.00 4.79
4758 4922 8.716674 TCATATATTTTTAGTACTCCCTCCGT 57.283 34.615 0.00 0.00 0.00 4.69
4759 4923 9.587772 CATCATATATTTTTAGTACTCCCTCCG 57.412 37.037 0.00 0.00 0.00 4.63
4760 4924 9.384764 GCATCATATATTTTTAGTACTCCCTCC 57.615 37.037 0.00 0.00 0.00 4.30
4761 4925 9.384764 GGCATCATATATTTTTAGTACTCCCTC 57.615 37.037 0.00 0.00 0.00 4.30
4762 4926 8.890472 TGGCATCATATATTTTTAGTACTCCCT 58.110 33.333 0.00 0.00 0.00 4.20
4763 4927 9.515226 TTGGCATCATATATTTTTAGTACTCCC 57.485 33.333 0.00 0.00 0.00 4.30
4791 4955 4.129380 GTCAAGCAAAATTTGAGGCCTTT 58.871 39.130 6.77 0.00 35.39 3.11
4813 4977 3.428870 GCGGGATACATGATAAAGTGACG 59.571 47.826 0.00 0.00 39.74 4.35
4870 5034 9.367444 ACTGTAATCTTCAATTTAGGTAGAACG 57.633 33.333 0.00 0.00 0.00 3.95
4956 5120 9.448438 AATAGCATGTGAAAATGACTTACACTA 57.552 29.630 0.00 0.00 33.41 2.74
5016 5181 9.457436 GAAGGTAAAGGTGTGAAAAGGATATTA 57.543 33.333 0.00 0.00 0.00 0.98
5018 5183 7.466804 TGAAGGTAAAGGTGTGAAAAGGATAT 58.533 34.615 0.00 0.00 0.00 1.63
5019 5184 6.843752 TGAAGGTAAAGGTGTGAAAAGGATA 58.156 36.000 0.00 0.00 0.00 2.59
5074 5239 0.460987 CAAGCAGGATCCCGTCTGTC 60.461 60.000 8.55 0.00 33.81 3.51
5209 5380 8.980832 AAGGGTCCTACTGATATTCTTCATAT 57.019 34.615 0.00 0.00 0.00 1.78
5210 5381 8.798975 AAAGGGTCCTACTGATATTCTTCATA 57.201 34.615 0.00 0.00 0.00 2.15
5211 5382 7.348274 TGAAAGGGTCCTACTGATATTCTTCAT 59.652 37.037 0.00 0.00 0.00 2.57
5212 5383 6.672218 TGAAAGGGTCCTACTGATATTCTTCA 59.328 38.462 0.00 0.00 0.00 3.02
5213 5384 6.987404 GTGAAAGGGTCCTACTGATATTCTTC 59.013 42.308 0.00 0.00 0.00 2.87
5214 5385 6.407074 CGTGAAAGGGTCCTACTGATATTCTT 60.407 42.308 0.00 0.00 0.00 2.52
5215 5386 5.069251 CGTGAAAGGGTCCTACTGATATTCT 59.931 44.000 0.00 0.00 0.00 2.40
5216 5387 5.290386 CGTGAAAGGGTCCTACTGATATTC 58.710 45.833 0.00 0.00 0.00 1.75
5217 5388 4.101119 CCGTGAAAGGGTCCTACTGATATT 59.899 45.833 0.00 0.00 37.03 1.28
5218 5389 3.641906 CCGTGAAAGGGTCCTACTGATAT 59.358 47.826 0.00 0.00 37.03 1.63
5219 5390 3.028850 CCGTGAAAGGGTCCTACTGATA 58.971 50.000 0.00 0.00 37.03 2.15
5220 5391 1.831736 CCGTGAAAGGGTCCTACTGAT 59.168 52.381 0.00 0.00 37.03 2.90
5221 5392 1.203087 TCCGTGAAAGGGTCCTACTGA 60.203 52.381 0.00 0.00 43.84 3.41
5222 5393 1.263356 TCCGTGAAAGGGTCCTACTG 58.737 55.000 0.00 0.00 43.84 2.74
5223 5394 2.249309 ATCCGTGAAAGGGTCCTACT 57.751 50.000 0.00 0.00 43.84 2.57
5224 5395 4.684484 AATATCCGTGAAAGGGTCCTAC 57.316 45.455 0.00 0.00 43.84 3.18
5225 5396 4.282703 GCTAATATCCGTGAAAGGGTCCTA 59.717 45.833 0.00 0.00 43.84 2.94
5226 5397 3.071167 GCTAATATCCGTGAAAGGGTCCT 59.929 47.826 0.00 0.00 43.84 3.85
5227 5398 3.181458 TGCTAATATCCGTGAAAGGGTCC 60.181 47.826 0.00 0.00 43.84 4.46
5228 5399 4.067972 TGCTAATATCCGTGAAAGGGTC 57.932 45.455 0.00 0.00 43.84 4.46
5229 5400 4.497291 TTGCTAATATCCGTGAAAGGGT 57.503 40.909 0.00 0.00 43.84 4.34
5230 5401 4.036380 GGTTTGCTAATATCCGTGAAAGGG 59.964 45.833 0.00 0.00 45.09 3.95
5235 5406 4.406326 TGTAGGGTTTGCTAATATCCGTGA 59.594 41.667 0.00 0.00 0.00 4.35
5259 5430 7.389803 TCAGTACATGTTAATTGTGGGATTG 57.610 36.000 2.30 0.00 0.00 2.67
5301 5472 2.165357 ATCTCAGGAAAAATGGGCCC 57.835 50.000 17.59 17.59 0.00 5.80
5312 5483 5.537295 CCATGATTGCCAAATTATCTCAGGA 59.463 40.000 0.00 0.00 0.00 3.86
5326 5497 3.003689 CGTACAATTCTCCCATGATTGCC 59.996 47.826 0.00 0.00 0.00 4.52
5366 5537 2.912956 AGCCTCATAACCTTGTTCCTCA 59.087 45.455 0.00 0.00 0.00 3.86
5402 5573 7.638444 TGGAAATATATCTTCAGTTTCCCACA 58.362 34.615 11.40 0.00 44.45 4.17
5405 5576 9.847224 TTACTGGAAATATATCTTCAGTTTCCC 57.153 33.333 5.29 0.00 44.45 3.97
5446 5617 4.079970 TCCTGAACTGTTCGACTATCAGT 58.920 43.478 15.18 8.30 43.04 3.41
5469 5640 6.587608 GGAAAATAGAACATCAGCAAAACCAG 59.412 38.462 0.00 0.00 0.00 4.00
5476 5647 5.508567 TCATGGGAAAATAGAACATCAGCA 58.491 37.500 0.00 0.00 0.00 4.41
5477 5648 6.455360 TTCATGGGAAAATAGAACATCAGC 57.545 37.500 0.00 0.00 0.00 4.26
5565 5736 6.513806 TTACAAGCTATGGTGTACGAGTAA 57.486 37.500 0.00 0.00 30.08 2.24
5566 5737 6.704289 ATTACAAGCTATGGTGTACGAGTA 57.296 37.500 0.00 0.00 30.08 2.59
5567 5738 5.593679 ATTACAAGCTATGGTGTACGAGT 57.406 39.130 0.00 0.00 30.08 4.18
5568 5739 6.144080 GCTAATTACAAGCTATGGTGTACGAG 59.856 42.308 0.00 0.00 37.01 4.18
5569 5740 5.981315 GCTAATTACAAGCTATGGTGTACGA 59.019 40.000 0.00 0.00 37.01 3.43
5570 5741 6.211664 GCTAATTACAAGCTATGGTGTACG 57.788 41.667 0.00 0.00 37.01 3.67
5659 5830 6.713450 GGGTAAATAGGAACAAACTGAACAGA 59.287 38.462 8.87 0.00 0.00 3.41
5698 5869 5.336610 CCATTGTAGATGCACATTGGTTCAA 60.337 40.000 0.00 0.00 41.69 2.69
5699 5870 4.158209 CCATTGTAGATGCACATTGGTTCA 59.842 41.667 0.00 0.00 41.69 3.18
5700 5871 4.675510 CCATTGTAGATGCACATTGGTTC 58.324 43.478 0.00 0.00 41.69 3.62
5701 5872 4.724074 CCATTGTAGATGCACATTGGTT 57.276 40.909 0.00 0.00 41.69 3.67
5704 5875 4.968812 TGACCATTGTAGATGCACATTG 57.031 40.909 0.00 0.00 32.26 2.82
5705 5876 6.406177 GGAAATGACCATTGTAGATGCACATT 60.406 38.462 0.00 0.00 0.00 2.71
5706 5877 5.068198 GGAAATGACCATTGTAGATGCACAT 59.932 40.000 0.00 0.00 0.00 3.21
5707 5878 4.398988 GGAAATGACCATTGTAGATGCACA 59.601 41.667 0.00 0.00 0.00 4.57
5708 5879 4.202050 GGGAAATGACCATTGTAGATGCAC 60.202 45.833 0.00 0.00 0.00 4.57
5709 5880 3.953612 GGGAAATGACCATTGTAGATGCA 59.046 43.478 0.00 0.00 0.00 3.96
5710 5881 4.210331 AGGGAAATGACCATTGTAGATGC 58.790 43.478 0.00 0.00 0.00 3.91
5711 5882 5.439721 TGAGGGAAATGACCATTGTAGATG 58.560 41.667 0.00 0.00 0.00 2.90
5712 5883 5.715439 TGAGGGAAATGACCATTGTAGAT 57.285 39.130 0.00 0.00 0.00 1.98
5713 5884 5.715439 ATGAGGGAAATGACCATTGTAGA 57.285 39.130 0.00 0.00 0.00 2.59
5732 5903 5.726560 TCTGATATCCCTCCACCTAAATGA 58.273 41.667 0.00 0.00 0.00 2.57
5799 5970 6.106648 TCTGAATGTTGACTCACAAGATCT 57.893 37.500 0.00 0.00 40.75 2.75
6014 6209 9.725019 TCATCGTAAGCAATATATTCTTCCAAT 57.275 29.630 11.19 4.51 37.18 3.16
6051 6246 9.168451 TGACAAACACTAGAACAACAGAAATAA 57.832 29.630 0.00 0.00 0.00 1.40
6234 6430 5.344933 CAGAGCTTTAAATTTAAACGTGCCC 59.655 40.000 20.92 14.23 0.00 5.36
6308 6504 5.625150 AGGTTTGACTGAAAACTAGCTCAT 58.375 37.500 0.00 0.00 40.01 2.90
6329 6525 4.884668 TGTACCTGTGGAAACTAGAAGG 57.115 45.455 0.00 0.00 0.00 3.46
6341 6537 2.350522 GCACTCTGGAATGTACCTGTG 58.649 52.381 0.00 0.00 33.47 3.66
6393 6589 7.956943 GCAATTAACACCAAGAACATAAATTGC 59.043 33.333 11.67 11.67 45.09 3.56
6432 6628 4.764679 TCTGTTCCAAATGGATTTGTCG 57.235 40.909 2.38 0.00 44.98 4.35
6491 6689 7.982354 GTCTGAACTAACTATATGGCAAGAACT 59.018 37.037 0.00 0.00 0.00 3.01
6498 6696 7.222999 GTCTGTTGTCTGAACTAACTATATGGC 59.777 40.741 0.00 0.00 0.00 4.40
6524 6722 1.487482 ATACGACAATCATCGGTGCG 58.513 50.000 0.00 0.00 46.56 5.34
6530 6728 7.974675 TGAAAGGAGAAAATACGACAATCATC 58.025 34.615 0.00 0.00 0.00 2.92
6536 6734 6.285224 TCTGTTGAAAGGAGAAAATACGACA 58.715 36.000 0.00 0.00 0.00 4.35
6661 6861 4.903149 TGATAAATGGAAGGACTAGGGGA 58.097 43.478 0.00 0.00 0.00 4.81
6662 6862 5.646692 TTGATAAATGGAAGGACTAGGGG 57.353 43.478 0.00 0.00 0.00 4.79
6663 6863 9.813826 ATATTTTGATAAATGGAAGGACTAGGG 57.186 33.333 0.00 0.00 35.61 3.53
6667 6867 9.887862 ATGGATATTTTGATAAATGGAAGGACT 57.112 29.630 0.00 0.00 35.61 3.85
6695 6896 0.830648 TAGGATTGCCGACCAGAAGG 59.169 55.000 0.00 0.00 39.96 3.46
6704 6905 3.545703 AGTTGAATTCCTAGGATTGCCG 58.454 45.455 13.57 0.00 39.96 5.69
6706 6907 5.415701 TGACAAGTTGAATTCCTAGGATTGC 59.584 40.000 13.57 8.61 0.00 3.56
6750 6951 2.683768 AGAGTTCGGATAATGGAGGCT 58.316 47.619 0.00 0.00 0.00 4.58
6782 6983 8.946085 GTGATCCATTTTTGTTCTATCAGTACA 58.054 33.333 0.00 0.00 0.00 2.90
6783 6984 8.398665 GGTGATCCATTTTTGTTCTATCAGTAC 58.601 37.037 0.00 0.00 0.00 2.73
6791 6992 6.729690 TTGAAGGTGATCCATTTTTGTTCT 57.270 33.333 0.00 0.00 35.89 3.01
6812 7013 5.991606 TCAGAGTGAACAGTGAGGTAATTTG 59.008 40.000 0.00 0.00 0.00 2.32
6817 7018 5.297029 CGATATCAGAGTGAACAGTGAGGTA 59.703 44.000 3.12 0.00 0.00 3.08
6820 7021 5.270083 GTCGATATCAGAGTGAACAGTGAG 58.730 45.833 3.12 0.00 0.00 3.51
6821 7022 4.201822 CGTCGATATCAGAGTGAACAGTGA 60.202 45.833 3.12 0.00 0.00 3.41
6822 7023 4.031691 CGTCGATATCAGAGTGAACAGTG 58.968 47.826 3.12 0.00 0.00 3.66
6823 7024 3.487711 GCGTCGATATCAGAGTGAACAGT 60.488 47.826 3.12 0.00 0.00 3.55
6824 7025 3.039405 GCGTCGATATCAGAGTGAACAG 58.961 50.000 3.12 0.00 0.00 3.16
6825 7026 2.422127 TGCGTCGATATCAGAGTGAACA 59.578 45.455 3.12 0.00 0.00 3.18
6826 7027 3.066369 TGCGTCGATATCAGAGTGAAC 57.934 47.619 3.12 0.00 0.00 3.18
6840 7041 2.780643 CTGCCAGAACATGCGTCG 59.219 61.111 0.00 0.00 0.00 5.12
6842 7043 1.174712 AAAGCTGCCAGAACATGCGT 61.175 50.000 0.00 0.00 0.00 5.24
6848 7049 4.837896 ACTTAAAGAAAGCTGCCAGAAC 57.162 40.909 0.00 0.00 38.93 3.01
6851 7052 3.125316 CGGTACTTAAAGAAAGCTGCCAG 59.875 47.826 0.00 0.00 38.93 4.85
6885 7089 3.661648 GGTCTGGTGGCCCATGGT 61.662 66.667 11.73 0.00 40.90 3.55
6895 7099 2.426023 GGCGTTCACTGGTCTGGT 59.574 61.111 0.00 0.00 0.00 4.00
6947 7151 2.124122 GCAAACGCGAAATGAAAGGTT 58.876 42.857 15.93 0.00 0.00 3.50
6976 7180 6.320672 AGCACTTTGAATTCAGATTAGATGGG 59.679 38.462 8.41 0.00 0.00 4.00
6983 7187 9.798994 GATATTTCAGCACTTTGAATTCAGATT 57.201 29.630 8.41 0.00 36.97 2.40
6984 7188 9.186837 AGATATTTCAGCACTTTGAATTCAGAT 57.813 29.630 8.41 0.00 36.97 2.90
6985 7189 8.571461 AGATATTTCAGCACTTTGAATTCAGA 57.429 30.769 8.41 3.12 36.97 3.27
6986 7190 7.914346 GGAGATATTTCAGCACTTTGAATTCAG 59.086 37.037 8.41 0.49 36.97 3.02
7107 7311 6.448006 AGCGACCTATAAGTAATAACAGCAG 58.552 40.000 0.00 0.00 0.00 4.24
7177 7381 5.019785 ACTAAAGTCGGTCTGAAAACAGT 57.980 39.130 0.00 0.00 0.00 3.55
7209 7413 6.155221 AGGCTGTCAAAGAGAACTGTATGATA 59.845 38.462 0.00 0.00 0.00 2.15
7311 7529 1.201987 CCGGTTAAATTCTTGCGGTCG 60.202 52.381 0.00 0.00 0.00 4.79
7315 7533 0.179148 GGCCCGGTTAAATTCTTGCG 60.179 55.000 0.00 0.00 0.00 4.85
7316 7534 0.892063 TGGCCCGGTTAAATTCTTGC 59.108 50.000 0.00 0.00 0.00 4.01
7331 7549 3.493303 GGATCAGGGGGAGTGGCC 61.493 72.222 0.00 0.00 0.00 5.36
7376 7594 9.522804 CAGTTTTAGCATAACTTTGGTACAAAA 57.477 29.630 0.00 0.00 37.33 2.44
7377 7595 7.650104 GCAGTTTTAGCATAACTTTGGTACAAA 59.350 33.333 0.00 0.00 37.33 2.83
7380 7598 5.793457 CGCAGTTTTAGCATAACTTTGGTAC 59.207 40.000 0.00 0.00 33.73 3.34
7381 7599 5.470777 ACGCAGTTTTAGCATAACTTTGGTA 59.529 36.000 0.00 0.00 37.78 3.25
7382 7600 4.277423 ACGCAGTTTTAGCATAACTTTGGT 59.723 37.500 0.00 0.00 37.78 3.67
7383 7601 4.794169 ACGCAGTTTTAGCATAACTTTGG 58.206 39.130 0.00 0.00 37.78 3.28
7406 7625 5.009911 TGCTCCATCCGATCCAAATTAATTG 59.990 40.000 0.39 0.00 38.84 2.32
7407 7626 5.139727 TGCTCCATCCGATCCAAATTAATT 58.860 37.500 0.00 0.00 0.00 1.40
7424 7643 4.100344 TGTCTGTACACTTTTACTGCTCCA 59.900 41.667 0.00 0.00 0.00 3.86
7572 7792 6.535150 CGCTTCATCCATCTTGTTAGACTTAA 59.465 38.462 0.00 0.00 31.99 1.85
7573 7793 6.042777 CGCTTCATCCATCTTGTTAGACTTA 58.957 40.000 0.00 0.00 31.99 2.24
7599 7819 3.486875 GCAGCTTAACGGCGAATAATGTT 60.487 43.478 16.62 0.00 37.29 2.71
7657 7877 2.125188 GTCTCTGGGAGCAGCTGC 60.125 66.667 31.53 31.53 42.49 5.25
7658 7878 2.288778 TGGTCTCTGGGAGCAGCTG 61.289 63.158 10.11 10.11 45.96 4.24
7659 7879 2.121385 TGGTCTCTGGGAGCAGCT 59.879 61.111 5.11 0.00 45.96 4.24
7747 7967 0.172803 AAAGGGTTCGACGATCTCCG 59.827 55.000 0.00 0.00 45.44 4.63
7759 7979 5.562298 TCTCTAGCTGTACAAAAAGGGTT 57.438 39.130 0.00 0.00 0.00 4.11
7760 7980 5.552178 CTTCTCTAGCTGTACAAAAAGGGT 58.448 41.667 0.00 0.00 0.00 4.34
7813 8033 0.250295 CAAGTCGCTCTCCCCAACAA 60.250 55.000 0.00 0.00 0.00 2.83
7816 8036 2.347490 GCAAGTCGCTCTCCCCAA 59.653 61.111 0.00 0.00 37.77 4.12
7831 8061 0.178903 AGGTCAGGTCAGGTAAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
7836 8066 0.784495 AGGTCAGGTCAGGTCAGGTA 59.216 55.000 0.00 0.00 0.00 3.08
7902 8132 3.375782 ACTTTGCCAGATGCTTTGAAC 57.624 42.857 0.00 0.00 42.00 3.18
7903 8133 3.132646 ACAACTTTGCCAGATGCTTTGAA 59.867 39.130 0.00 0.00 42.00 2.69
7904 8134 2.694628 ACAACTTTGCCAGATGCTTTGA 59.305 40.909 0.00 0.00 42.00 2.69
7909 8139 1.689959 CGAACAACTTTGCCAGATGC 58.310 50.000 0.00 0.00 41.77 3.91
7937 8167 0.324645 AACTGGGGGATCAATGCCAC 60.325 55.000 2.81 0.00 42.81 5.01
7960 8190 1.106351 ACATTTCGCAGGGCACACAA 61.106 50.000 0.00 0.00 0.00 3.33
7961 8191 1.106351 AACATTTCGCAGGGCACACA 61.106 50.000 0.00 0.00 0.00 3.72
7962 8192 0.031994 AAACATTTCGCAGGGCACAC 59.968 50.000 0.00 0.00 0.00 3.82
7964 8194 0.598065 AGAAACATTTCGCAGGGCAC 59.402 50.000 0.00 0.00 41.92 5.01
7973 8208 5.106277 CCGGGAAACTAAGGAGAAACATTTC 60.106 44.000 0.00 0.00 37.45 2.17
8006 8244 3.242518 TCGTCACACGAGATTCATTCAC 58.757 45.455 0.00 0.00 46.73 3.18
8020 8258 0.880278 GAGTTGGCAGCTTCGTCACA 60.880 55.000 5.03 0.00 0.00 3.58
8021 8259 0.601311 AGAGTTGGCAGCTTCGTCAC 60.601 55.000 5.03 0.00 0.00 3.67
8023 8261 1.347817 CGAGAGTTGGCAGCTTCGTC 61.348 60.000 19.50 11.27 0.00 4.20
8025 8263 1.075425 CTCGAGAGTTGGCAGCTTCG 61.075 60.000 20.77 20.77 0.00 3.79
8033 8271 2.155194 CGCGCTTCTCGAGAGTTGG 61.155 63.158 15.94 7.74 40.54 3.77
8041 8279 3.971453 TTCCTCTGCGCGCTTCTCG 62.971 63.158 33.29 15.44 42.12 4.04
8044 8282 2.125912 TCTTCCTCTGCGCGCTTC 60.126 61.111 33.29 3.49 0.00 3.86
8049 8287 3.612247 TTGCCCTCTTCCTCTGCGC 62.612 63.158 0.00 0.00 0.00 6.09
8050 8288 1.003355 TTTGCCCTCTTCCTCTGCG 60.003 57.895 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.