Multiple sequence alignment - TraesCS4A01G421000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G421000 chr4A 100.000 4193 0 0 928 5120 691166202 691170394 0.000000e+00 7744.0
1 TraesCS4A01G421000 chr4A 100.000 740 0 0 1 740 691165275 691166014 0.000000e+00 1367.0
2 TraesCS4A01G421000 chr4A 87.565 965 63 26 953 1871 690938528 690937575 0.000000e+00 1064.0
3 TraesCS4A01G421000 chr4A 94.039 671 34 3 1459 2128 690886699 690886034 0.000000e+00 1013.0
4 TraesCS4A01G421000 chr4A 89.583 768 71 2 3302 4066 690885093 690884332 0.000000e+00 966.0
5 TraesCS4A01G421000 chr4A 85.767 815 99 4 3257 4066 690936865 690936063 0.000000e+00 846.0
6 TraesCS4A01G421000 chr4A 91.339 635 29 14 1225 1841 691470116 691469490 0.000000e+00 845.0
7 TraesCS4A01G421000 chr4A 85.696 790 97 10 3281 4066 691152471 691153248 0.000000e+00 819.0
8 TraesCS4A01G421000 chr4A 91.062 593 49 2 4116 4708 690883950 690883362 0.000000e+00 798.0
9 TraesCS4A01G421000 chr4A 88.288 666 67 8 4251 4913 691154047 691154704 0.000000e+00 787.0
10 TraesCS4A01G421000 chr4A 88.872 647 46 8 1 634 690732665 690732032 0.000000e+00 773.0
11 TraesCS4A01G421000 chr4A 88.525 610 70 0 3457 4066 690879955 690879346 0.000000e+00 739.0
12 TraesCS4A01G421000 chr4A 85.935 647 64 17 1213 1842 691323842 691324478 0.000000e+00 665.0
13 TraesCS4A01G421000 chr4A 88.868 539 60 0 4572 5110 690673618 690673080 0.000000e+00 664.0
14 TraesCS4A01G421000 chr4A 86.050 638 64 17 1219 1842 691246756 691247382 0.000000e+00 662.0
15 TraesCS4A01G421000 chr4A 81.650 812 111 19 3263 4066 691325142 691325923 1.550000e-179 640.0
16 TraesCS4A01G421000 chr4A 85.471 647 44 29 1217 1833 690881567 690880941 3.360000e-176 628.0
17 TraesCS4A01G421000 chr4A 89.293 495 34 9 942 1422 690689718 690689229 2.040000e-168 603.0
18 TraesCS4A01G421000 chr4A 84.688 640 36 13 4 603 690690550 690689933 2.660000e-162 582.0
19 TraesCS4A01G421000 chr4A 84.983 586 69 12 3291 3869 690687681 690687108 1.240000e-160 577.0
20 TraesCS4A01G421000 chr4A 96.353 329 9 2 2852 3177 690885773 690885445 5.830000e-149 538.0
21 TraesCS4A01G421000 chr4A 88.064 377 31 9 315 681 690888037 690887665 7.870000e-118 435.0
22 TraesCS4A01G421000 chr4A 85.176 398 29 13 12 387 690939313 690938924 1.040000e-101 381.0
23 TraesCS4A01G421000 chr4A 95.299 234 11 0 2306 2539 690886038 690885805 6.260000e-99 372.0
24 TraesCS4A01G421000 chr4A 87.240 337 22 8 4113 4446 690673940 690673622 1.050000e-96 364.0
25 TraesCS4A01G421000 chr4A 85.246 366 33 7 90 434 690882620 690882255 1.750000e-94 357.0
26 TraesCS4A01G421000 chr4A 89.591 269 10 4 2029 2281 690937577 690937311 4.940000e-85 326.0
27 TraesCS4A01G421000 chr4A 94.712 208 4 1 1192 1399 690886998 690886798 2.980000e-82 316.0
28 TraesCS4A01G421000 chr4A 87.952 249 27 2 44 289 690888701 690888453 1.800000e-74 291.0
29 TraesCS4A01G421000 chr4A 88.889 243 9 8 2058 2285 690880878 690880639 3.020000e-72 283.0
30 TraesCS4A01G421000 chr4A 94.444 162 9 0 470 631 690938877 690938716 3.060000e-62 250.0
31 TraesCS4A01G421000 chr4A 88.000 200 19 4 482 678 690882238 690882041 1.110000e-56 231.0
32 TraesCS4A01G421000 chr4A 83.654 208 27 3 4165 4366 691829431 691829225 6.770000e-44 189.0
33 TraesCS4A01G421000 chr4A 90.769 130 12 0 4113 4242 691153653 691153782 1.890000e-39 174.0
34 TraesCS4A01G421000 chr4A 90.441 136 3 1 953 1078 690881749 690881614 2.450000e-38 171.0
35 TraesCS4A01G421000 chr4A 84.868 152 18 5 942 1091 691150456 691150604 1.150000e-31 148.0
36 TraesCS4A01G421000 chr4A 91.892 74 6 0 1012 1085 691323757 691323830 2.520000e-18 104.0
37 TraesCS4A01G421000 chr4A 95.349 43 1 1 2925 2966 691248376 691248418 3.310000e-07 67.6
38 TraesCS4A01G421000 chr4A 88.679 53 6 0 676 728 690689785 690689733 1.190000e-06 65.8
39 TraesCS4A01G421000 chr4A 100.000 31 0 0 646 676 690938716 690938686 1.990000e-04 58.4
40 TraesCS4A01G421000 chr4A 100.000 29 0 0 1106 1134 690881607 690881579 3.000000e-03 54.7
41 TraesCS4A01G421000 chr7D 87.948 921 48 32 942 1830 34077464 34076575 0.000000e+00 1027.0
42 TraesCS4A01G421000 chr7D 87.944 788 82 5 3282 4065 34074589 34073811 0.000000e+00 917.0
43 TraesCS4A01G421000 chr7D 86.496 859 47 32 942 1759 34444692 34445522 0.000000e+00 880.0
44 TraesCS4A01G421000 chr7D 85.556 810 108 5 3257 4066 34446643 34447443 0.000000e+00 839.0
45 TraesCS4A01G421000 chr7D 87.688 666 47 12 44 677 34078468 34077806 0.000000e+00 743.0
46 TraesCS4A01G421000 chr7D 90.590 542 35 8 1222 1759 33754618 33755147 0.000000e+00 704.0
47 TraesCS4A01G421000 chr7D 89.358 545 32 10 153 672 34168937 34168394 0.000000e+00 662.0
48 TraesCS4A01G421000 chr7D 92.010 413 23 4 1459 1871 34151434 34151032 5.750000e-159 571.0
49 TraesCS4A01G421000 chr7D 89.316 468 28 7 942 1399 34151985 34151530 7.440000e-158 568.0
50 TraesCS4A01G421000 chr7D 81.818 715 69 30 5 677 34152920 34152225 1.250000e-150 544.0
51 TraesCS4A01G421000 chr7D 86.789 492 47 10 3257 3742 34150002 34149523 2.710000e-147 532.0
52 TraesCS4A01G421000 chr7D 85.448 536 37 17 124 631 34443991 34444513 2.110000e-143 520.0
53 TraesCS4A01G421000 chr7D 92.201 359 26 1 4113 4471 34073415 34073059 1.640000e-139 507.0
54 TraesCS4A01G421000 chr7D 91.844 282 23 0 4501 4782 34072729 34072448 1.340000e-105 394.0
55 TraesCS4A01G421000 chr7D 85.602 382 29 9 2056 2415 34445649 34446026 1.350000e-100 377.0
56 TraesCS4A01G421000 chr7D 81.777 439 35 16 2029 2451 34151034 34150625 4.940000e-85 326.0
57 TraesCS4A01G421000 chr7D 86.957 253 27 1 4864 5110 34071129 34070877 3.900000e-71 279.0
58 TraesCS4A01G421000 chr7D 88.272 162 19 0 1870 2031 249621996 249621835 1.450000e-45 195.0
59 TraesCS4A01G421000 chr7D 96.104 77 3 0 1012 1088 33754352 33754428 5.380000e-25 126.0
60 TraesCS4A01G421000 chr7D 86.239 109 15 0 4999 5107 34458175 34458283 9.010000e-23 119.0
61 TraesCS4A01G421000 chr7D 91.026 78 7 0 4786 4863 34072344 34072267 7.010000e-19 106.0
62 TraesCS4A01G421000 chr7D 95.918 49 1 1 691 738 34077668 34077620 1.530000e-10 78.7
63 TraesCS4A01G421000 chr7D 95.918 49 1 1 691 738 34152117 34152069 1.530000e-10 78.7
64 TraesCS4A01G421000 chr7A 91.814 623 32 10 1225 1835 34106557 34105942 0.000000e+00 850.0
65 TraesCS4A01G421000 chr7A 85.147 781 99 11 3282 4057 34518220 34517452 0.000000e+00 784.0
66 TraesCS4A01G421000 chr7A 88.615 527 51 7 4191 4714 34517166 34516646 2.600000e-177 632.0
67 TraesCS4A01G421000 chr7A 84.137 498 27 22 942 1419 34519918 34519453 7.870000e-118 435.0
68 TraesCS4A01G421000 chr7A 81.374 553 69 19 95 621 34119537 34118993 2.200000e-113 420.0
69 TraesCS4A01G421000 chr7A 92.544 228 12 4 455 677 34520398 34520171 6.400000e-84 322.0
70 TraesCS4A01G421000 chr7A 78.234 487 54 28 3310 3767 34104458 34103995 1.090000e-66 265.0
71 TraesCS4A01G421000 chr7A 89.873 79 8 0 482 560 34520273 34520195 9.070000e-18 102.0
72 TraesCS4A01G421000 chr5B 92.558 215 14 2 2556 2769 227015911 227016124 1.790000e-79 307.0
73 TraesCS4A01G421000 chr3B 92.558 215 14 2 2556 2769 483922387 483922174 1.790000e-79 307.0
74 TraesCS4A01G421000 chr3B 88.344 163 19 0 1870 2032 747333475 747333637 4.040000e-46 196.0
75 TraesCS4A01G421000 chr3B 77.155 232 43 9 4613 4840 796043944 796044169 5.380000e-25 126.0
76 TraesCS4A01G421000 chr3B 75.697 251 53 8 4613 4860 796317114 796317359 9.010000e-23 119.0
77 TraesCS4A01G421000 chr2B 92.523 214 15 1 2556 2769 5051379 5051167 6.440000e-79 305.0
78 TraesCS4A01G421000 chr2B 92.381 210 14 2 2556 2764 795422808 795423016 1.080000e-76 298.0
79 TraesCS4A01G421000 chr2B 91.628 215 16 2 2556 2769 291370866 291371079 3.880000e-76 296.0
80 TraesCS4A01G421000 chr4B 92.558 215 11 4 2556 2769 422179805 422180015 2.320000e-78 303.0
81 TraesCS4A01G421000 chr6B 92.056 214 17 0 2556 2769 620822320 620822107 8.330000e-78 302.0
82 TraesCS4A01G421000 chr6B 90.566 212 17 3 2556 2767 501131248 501131040 1.400000e-70 278.0
83 TraesCS4A01G421000 chr7B 91.121 214 17 2 2556 2769 406759462 406759673 6.490000e-74 289.0
84 TraesCS4A01G421000 chr7B 87.730 163 20 0 1872 2034 120735817 120735655 1.880000e-44 191.0
85 TraesCS4A01G421000 chr7B 85.326 184 23 4 1869 2051 411745275 411745455 2.430000e-43 187.0
86 TraesCS4A01G421000 chr6D 87.805 164 20 0 1870 2033 204160018 204160181 5.230000e-45 193.0
87 TraesCS4A01G421000 chr1B 86.364 176 20 3 1865 2037 506094805 506094979 6.770000e-44 189.0
88 TraesCS4A01G421000 chr5D 85.955 178 19 5 1859 2034 53869709 53869536 8.750000e-43 185.0
89 TraesCS4A01G421000 chr5D 86.207 174 21 3 1863 2035 334801288 334801459 8.750000e-43 185.0
90 TraesCS4A01G421000 chr1D 80.272 147 19 7 2993 3132 24208940 24208797 9.070000e-18 102.0
91 TraesCS4A01G421000 chr5A 80.916 131 19 4 2993 3119 491750365 491750237 1.170000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G421000 chr4A 691165275 691170394 5119 False 4555.500000 7744 100.000000 1 5120 2 chr4A.!!$F2 5119
1 TraesCS4A01G421000 chr4A 691469490 691470116 626 True 845.000000 845 91.339000 1225 1841 1 chr4A.!!$R2 616
2 TraesCS4A01G421000 chr4A 690732032 690732665 633 True 773.000000 773 88.872000 1 634 1 chr4A.!!$R1 633
3 TraesCS4A01G421000 chr4A 690673080 690673940 860 True 514.000000 664 88.054000 4113 5110 2 chr4A.!!$R4 997
4 TraesCS4A01G421000 chr4A 690936063 690939313 3250 True 487.566667 1064 90.423833 12 4066 6 chr4A.!!$R7 4054
5 TraesCS4A01G421000 chr4A 691150456 691154704 4248 False 482.000000 819 87.405250 942 4913 4 chr4A.!!$F1 3971
6 TraesCS4A01G421000 chr4A 690879346 690888701 9355 True 479.513333 1013 90.909067 44 4708 15 chr4A.!!$R6 4664
7 TraesCS4A01G421000 chr4A 691323757 691325923 2166 False 469.666667 665 86.492333 1012 4066 3 chr4A.!!$F4 3054
8 TraesCS4A01G421000 chr4A 690687108 690690550 3442 True 456.950000 603 86.910750 4 3869 4 chr4A.!!$R5 3865
9 TraesCS4A01G421000 chr4A 691246756 691248418 1662 False 364.800000 662 90.699500 1219 2966 2 chr4A.!!$F3 1747
10 TraesCS4A01G421000 chr7D 34168394 34168937 543 True 662.000000 662 89.358000 153 672 1 chr7D.!!$R1 519
11 TraesCS4A01G421000 chr7D 34443991 34447443 3452 False 654.000000 880 85.775500 124 4066 4 chr7D.!!$F3 3942
12 TraesCS4A01G421000 chr7D 34070877 34078468 7591 True 506.462500 1027 90.190750 44 5110 8 chr7D.!!$R3 5066
13 TraesCS4A01G421000 chr7D 34149523 34152920 3397 True 436.616667 571 87.938000 5 3742 6 chr7D.!!$R4 3737
14 TraesCS4A01G421000 chr7D 33754352 33755147 795 False 415.000000 704 93.347000 1012 1759 2 chr7D.!!$F2 747
15 TraesCS4A01G421000 chr7A 34103995 34106557 2562 True 557.500000 850 85.024000 1225 3767 2 chr7A.!!$R2 2542
16 TraesCS4A01G421000 chr7A 34516646 34520398 3752 True 455.000000 784 88.063200 455 4714 5 chr7A.!!$R3 4259
17 TraesCS4A01G421000 chr7A 34118993 34119537 544 True 420.000000 420 81.374000 95 621 1 chr7A.!!$R1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 871 0.242017 GCTGGCAAAGTTCGCAATCT 59.758 50.0 0.00 0.0 0.0 2.40 F
730 1370 0.313043 GTCACGTGTCCTTTCTCGGA 59.687 55.0 16.51 0.0 0.0 4.55 F
2553 10637 0.178861 AACCTGATGAGACCCACCCT 60.179 55.0 0.00 0.0 0.0 4.34 F
2678 10762 0.104777 TCAGATGGGGGATGAGGGAG 60.105 60.0 0.00 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 3019 0.525668 ACCACTCGCGAGCTATTTCG 60.526 55.0 34.83 16.28 43.23 3.46 R
2659 10743 0.104777 CTCCCTCATCCCCCATCTGA 60.105 60.0 0.00 0.00 0.00 3.27 R
4033 12646 0.176680 GGACAGTGTCAGCATCCGAT 59.823 55.0 24.20 0.00 33.68 4.18 R
4642 14185 0.250467 TGGTCTTTCTGCCACTCAGC 60.250 55.0 0.00 0.00 42.56 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 117 7.758076 GCAACTTTGGTCAATTAATTAGGTACC 59.242 37.037 2.73 2.73 0.00 3.34
120 125 6.145696 GTCAATTAATTAGGTACCGCTAGCAG 59.854 42.308 16.45 5.85 0.00 4.24
279 290 3.472283 AAGCAGGAGACAGATATGCAG 57.528 47.619 0.00 0.00 39.34 4.41
357 781 6.405538 CAGAGAAGTCAAGAAAGCTATTCCT 58.594 40.000 0.00 0.00 0.00 3.36
429 871 0.242017 GCTGGCAAAGTTCGCAATCT 59.758 50.000 0.00 0.00 0.00 2.40
430 872 1.468520 GCTGGCAAAGTTCGCAATCTA 59.531 47.619 0.00 0.00 0.00 1.98
431 873 2.476854 GCTGGCAAAGTTCGCAATCTAG 60.477 50.000 0.00 0.00 0.00 2.43
432 874 2.744202 CTGGCAAAGTTCGCAATCTAGT 59.256 45.455 0.00 0.00 0.00 2.57
433 875 3.932710 CTGGCAAAGTTCGCAATCTAGTA 59.067 43.478 0.00 0.00 0.00 1.82
434 876 3.682858 TGGCAAAGTTCGCAATCTAGTAC 59.317 43.478 0.00 0.00 0.00 2.73
435 877 3.933332 GGCAAAGTTCGCAATCTAGTACT 59.067 43.478 0.00 0.00 0.00 2.73
436 878 4.201724 GGCAAAGTTCGCAATCTAGTACTG 60.202 45.833 5.39 0.00 0.00 2.74
631 1126 5.413833 AGCATGAACATGAACGAAAAGAGAT 59.586 36.000 17.40 0.00 41.20 2.75
634 1129 7.912250 GCATGAACATGAACGAAAAGAGATAAT 59.088 33.333 17.40 0.00 41.20 1.28
689 1313 1.377987 GCTGTCGGTTTGGGCCATA 60.378 57.895 7.26 0.00 0.00 2.74
698 1322 2.297880 GGTTTGGGCCATAGTTTTCGTT 59.702 45.455 7.26 0.00 0.00 3.85
730 1370 0.313043 GTCACGTGTCCTTTCTCGGA 59.687 55.000 16.51 0.00 0.00 4.55
731 1371 0.596577 TCACGTGTCCTTTCTCGGAG 59.403 55.000 16.51 0.00 32.70 4.63
732 1372 1.009389 CACGTGTCCTTTCTCGGAGC 61.009 60.000 7.58 0.00 32.70 4.70
733 1373 1.179814 ACGTGTCCTTTCTCGGAGCT 61.180 55.000 0.00 0.00 32.70 4.09
734 1374 0.456995 CGTGTCCTTTCTCGGAGCTC 60.457 60.000 4.71 4.71 32.70 4.09
738 1378 0.684805 TCCTTTCTCGGAGCTCCTCC 60.685 60.000 29.73 5.73 46.44 4.30
1088 1778 1.677637 GACACCATCGTCTCCCTCCC 61.678 65.000 0.00 0.00 32.92 4.30
1089 1779 2.041819 ACCATCGTCTCCCTCCCC 60.042 66.667 0.00 0.00 0.00 4.81
1090 1780 2.283809 CCATCGTCTCCCTCCCCT 59.716 66.667 0.00 0.00 0.00 4.79
1091 1781 1.294426 ACCATCGTCTCCCTCCCCTA 61.294 60.000 0.00 0.00 0.00 3.53
1092 1782 0.540830 CCATCGTCTCCCTCCCCTAG 60.541 65.000 0.00 0.00 0.00 3.02
1093 1783 0.478942 CATCGTCTCCCTCCCCTAGA 59.521 60.000 0.00 0.00 0.00 2.43
1138 1884 3.764218 TGTAGGCTATAGCTAGGTGGAC 58.236 50.000 23.53 11.47 41.70 4.02
1203 2003 0.673437 TGATCGCTGTGTGTGTGAGA 59.327 50.000 0.00 0.00 0.00 3.27
1204 2004 1.273327 TGATCGCTGTGTGTGTGAGAT 59.727 47.619 0.00 0.00 0.00 2.75
1206 2006 1.783284 TCGCTGTGTGTGTGAGATTC 58.217 50.000 0.00 0.00 0.00 2.52
1209 2009 1.532868 GCTGTGTGTGTGAGATTCACC 59.467 52.381 6.74 0.01 46.40 4.02
1210 2010 2.146342 CTGTGTGTGTGAGATTCACCC 58.854 52.381 6.74 0.00 46.40 4.61
1214 2023 2.290260 TGTGTGTGAGATTCACCCATCC 60.290 50.000 6.74 0.00 46.40 3.51
1421 2262 1.063174 GTTCATGCATGAGTTCCTCGC 59.937 52.381 27.25 9.38 38.19 5.03
1556 2444 2.687935 GTTCAGCCACAAGGACAAGAAA 59.312 45.455 0.00 0.00 36.89 2.52
1560 2448 4.074970 CAGCCACAAGGACAAGAAATACT 58.925 43.478 0.00 0.00 36.89 2.12
1882 2818 3.446442 TCTACTGTACTCCCTCCGTTT 57.554 47.619 0.00 0.00 0.00 3.60
1922 2858 6.330278 TGTAGAGATTTCACAATAGACCACG 58.670 40.000 0.00 0.00 0.00 4.94
1923 2859 5.407407 AGAGATTTCACAATAGACCACGT 57.593 39.130 0.00 0.00 0.00 4.49
1930 2866 5.816449 TCACAATAGACCACGTACGAATA 57.184 39.130 24.41 7.15 0.00 1.75
2006 2942 8.699130 GGTCCATAATGAATTCTTTCCAAAGAT 58.301 33.333 9.66 0.00 43.92 2.40
2026 2962 4.705023 AGATTTACATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
2180 8402 4.954202 ACAGTAGTGAAGATTATGTCCGGA 59.046 41.667 0.00 0.00 0.00 5.14
2366 9237 0.529773 TAAATAGCGGTGGCAGCTCG 60.530 55.000 15.48 7.73 44.79 5.03
2367 9238 2.238847 AAATAGCGGTGGCAGCTCGA 62.239 55.000 15.48 3.23 44.79 4.04
2487 10346 6.650427 ATATGTCTGCTACTGGTCGAATAA 57.350 37.500 0.00 0.00 0.00 1.40
2511 10375 0.806868 CATTTGCATGCGGAGACACT 59.193 50.000 14.09 0.00 0.00 3.55
2534 10618 2.738000 GCATGTGACAAACTGCCAACAA 60.738 45.455 0.00 0.00 30.95 2.83
2535 10619 3.519579 CATGTGACAAACTGCCAACAAA 58.480 40.909 0.00 0.00 0.00 2.83
2536 10620 2.953020 TGTGACAAACTGCCAACAAAC 58.047 42.857 0.00 0.00 0.00 2.93
2537 10621 2.267426 GTGACAAACTGCCAACAAACC 58.733 47.619 0.00 0.00 0.00 3.27
2538 10622 2.094234 GTGACAAACTGCCAACAAACCT 60.094 45.455 0.00 0.00 0.00 3.50
2539 10623 2.094286 TGACAAACTGCCAACAAACCTG 60.094 45.455 0.00 0.00 0.00 4.00
2540 10624 2.165437 GACAAACTGCCAACAAACCTGA 59.835 45.455 0.00 0.00 0.00 3.86
2541 10625 2.765699 ACAAACTGCCAACAAACCTGAT 59.234 40.909 0.00 0.00 0.00 2.90
2542 10626 3.125316 CAAACTGCCAACAAACCTGATG 58.875 45.455 0.00 0.00 0.00 3.07
2543 10627 2.363306 ACTGCCAACAAACCTGATGA 57.637 45.000 0.00 0.00 0.00 2.92
2544 10628 2.233271 ACTGCCAACAAACCTGATGAG 58.767 47.619 0.00 0.00 0.00 2.90
2545 10629 2.158623 ACTGCCAACAAACCTGATGAGA 60.159 45.455 0.00 0.00 0.00 3.27
2546 10630 2.227388 CTGCCAACAAACCTGATGAGAC 59.773 50.000 0.00 0.00 0.00 3.36
2547 10631 1.541588 GCCAACAAACCTGATGAGACC 59.458 52.381 0.00 0.00 0.00 3.85
2548 10632 2.162681 CCAACAAACCTGATGAGACCC 58.837 52.381 0.00 0.00 0.00 4.46
2549 10633 2.488891 CCAACAAACCTGATGAGACCCA 60.489 50.000 0.00 0.00 0.00 4.51
2550 10634 2.554032 CAACAAACCTGATGAGACCCAC 59.446 50.000 0.00 0.00 0.00 4.61
2551 10635 1.073923 ACAAACCTGATGAGACCCACC 59.926 52.381 0.00 0.00 0.00 4.61
2552 10636 0.698818 AAACCTGATGAGACCCACCC 59.301 55.000 0.00 0.00 0.00 4.61
2553 10637 0.178861 AACCTGATGAGACCCACCCT 60.179 55.000 0.00 0.00 0.00 4.34
2554 10638 0.911525 ACCTGATGAGACCCACCCTG 60.912 60.000 0.00 0.00 0.00 4.45
2555 10639 0.618680 CCTGATGAGACCCACCCTGA 60.619 60.000 0.00 0.00 0.00 3.86
2556 10640 1.279496 CTGATGAGACCCACCCTGAA 58.721 55.000 0.00 0.00 0.00 3.02
2557 10641 1.630369 CTGATGAGACCCACCCTGAAA 59.370 52.381 0.00 0.00 0.00 2.69
2558 10642 2.240667 CTGATGAGACCCACCCTGAAAT 59.759 50.000 0.00 0.00 0.00 2.17
2559 10643 2.649312 TGATGAGACCCACCCTGAAATT 59.351 45.455 0.00 0.00 0.00 1.82
2560 10644 3.849574 TGATGAGACCCACCCTGAAATTA 59.150 43.478 0.00 0.00 0.00 1.40
2561 10645 4.478317 TGATGAGACCCACCCTGAAATTAT 59.522 41.667 0.00 0.00 0.00 1.28
2562 10646 5.669904 TGATGAGACCCACCCTGAAATTATA 59.330 40.000 0.00 0.00 0.00 0.98
2563 10647 6.332635 TGATGAGACCCACCCTGAAATTATAT 59.667 38.462 0.00 0.00 0.00 0.86
2564 10648 5.940617 TGAGACCCACCCTGAAATTATATG 58.059 41.667 0.00 0.00 0.00 1.78
2565 10649 5.669904 TGAGACCCACCCTGAAATTATATGA 59.330 40.000 0.00 0.00 0.00 2.15
2566 10650 6.183361 TGAGACCCACCCTGAAATTATATGAG 60.183 42.308 0.00 0.00 0.00 2.90
2567 10651 5.911178 AGACCCACCCTGAAATTATATGAGA 59.089 40.000 0.00 0.00 0.00 3.27
2568 10652 5.941788 ACCCACCCTGAAATTATATGAGAC 58.058 41.667 0.00 0.00 0.00 3.36
2569 10653 5.163088 ACCCACCCTGAAATTATATGAGACC 60.163 44.000 0.00 0.00 0.00 3.85
2570 10654 5.163099 CCCACCCTGAAATTATATGAGACCA 60.163 44.000 0.00 0.00 0.00 4.02
2571 10655 6.000219 CCACCCTGAAATTATATGAGACCAG 59.000 44.000 0.00 0.00 0.00 4.00
2572 10656 6.000219 CACCCTGAAATTATATGAGACCAGG 59.000 44.000 0.00 0.00 39.55 4.45
2573 10657 5.672194 ACCCTGAAATTATATGAGACCAGGT 59.328 40.000 0.00 0.00 38.51 4.00
2574 10658 6.183361 ACCCTGAAATTATATGAGACCAGGTC 60.183 42.308 12.25 12.25 38.51 3.85
2575 10659 6.043706 CCCTGAAATTATATGAGACCAGGTCT 59.956 42.308 23.18 23.18 46.42 3.85
2587 10671 5.730296 AGACCAGGTCTCATATAATTCGG 57.270 43.478 17.31 0.00 38.71 4.30
2588 10672 4.528596 AGACCAGGTCTCATATAATTCGGG 59.471 45.833 17.31 0.00 38.71 5.14
2589 10673 4.232091 ACCAGGTCTCATATAATTCGGGT 58.768 43.478 0.00 0.00 0.00 5.28
2590 10674 4.040461 ACCAGGTCTCATATAATTCGGGTG 59.960 45.833 0.00 0.00 0.00 4.61
2591 10675 4.283467 CCAGGTCTCATATAATTCGGGTGA 59.717 45.833 0.00 0.00 0.00 4.02
2592 10676 5.473931 CAGGTCTCATATAATTCGGGTGAG 58.526 45.833 0.00 0.00 38.07 3.51
2593 10677 5.243954 CAGGTCTCATATAATTCGGGTGAGA 59.756 44.000 8.03 8.03 41.99 3.27
2595 10679 5.723672 TCTCATATAATTCGGGTGAGACC 57.276 43.478 8.03 0.00 40.06 3.85
2607 10691 1.580059 GTGAGACCCACCCTAATGGA 58.420 55.000 0.00 0.00 43.02 3.41
2608 10692 2.127708 GTGAGACCCACCCTAATGGAT 58.872 52.381 0.00 0.00 43.02 3.41
2609 10693 2.126882 TGAGACCCACCCTAATGGATG 58.873 52.381 0.00 0.00 43.02 3.51
2610 10694 2.293519 TGAGACCCACCCTAATGGATGA 60.294 50.000 0.00 0.00 43.02 2.92
2611 10695 2.104963 GAGACCCACCCTAATGGATGAC 59.895 54.545 0.00 0.00 43.02 3.06
2612 10696 1.843851 GACCCACCCTAATGGATGACA 59.156 52.381 0.00 0.00 43.02 3.58
2613 10697 1.564348 ACCCACCCTAATGGATGACAC 59.436 52.381 0.00 0.00 43.02 3.67
2614 10698 1.475034 CCCACCCTAATGGATGACACG 60.475 57.143 0.00 0.00 43.02 4.49
2615 10699 1.209504 CCACCCTAATGGATGACACGT 59.790 52.381 0.00 0.00 43.02 4.49
2616 10700 2.279741 CACCCTAATGGATGACACGTG 58.720 52.381 15.48 15.48 38.00 4.49
2617 10701 1.906574 ACCCTAATGGATGACACGTGT 59.093 47.619 23.64 23.64 38.00 4.49
2618 10702 2.093658 ACCCTAATGGATGACACGTGTC 60.094 50.000 36.01 36.01 40.66 3.67
2631 10715 5.351233 GACACGTGTCATTCATAAACCAA 57.649 39.130 37.16 0.00 44.18 3.67
2632 10716 5.753744 GACACGTGTCATTCATAAACCAAA 58.246 37.500 37.16 0.00 44.18 3.28
2633 10717 6.137794 ACACGTGTCATTCATAAACCAAAA 57.862 33.333 17.22 0.00 0.00 2.44
2634 10718 6.565234 ACACGTGTCATTCATAAACCAAAAA 58.435 32.000 17.22 0.00 0.00 1.94
2635 10719 6.695278 ACACGTGTCATTCATAAACCAAAAAG 59.305 34.615 17.22 0.00 0.00 2.27
2636 10720 5.689961 ACGTGTCATTCATAAACCAAAAAGC 59.310 36.000 0.00 0.00 0.00 3.51
2637 10721 5.689514 CGTGTCATTCATAAACCAAAAAGCA 59.310 36.000 0.00 0.00 0.00 3.91
2638 10722 6.365789 CGTGTCATTCATAAACCAAAAAGCAT 59.634 34.615 0.00 0.00 0.00 3.79
2639 10723 7.410728 CGTGTCATTCATAAACCAAAAAGCATC 60.411 37.037 0.00 0.00 0.00 3.91
2640 10724 7.599998 GTGTCATTCATAAACCAAAAAGCATCT 59.400 33.333 0.00 0.00 0.00 2.90
2641 10725 8.801299 TGTCATTCATAAACCAAAAAGCATCTA 58.199 29.630 0.00 0.00 0.00 1.98
2642 10726 9.638239 GTCATTCATAAACCAAAAAGCATCTAA 57.362 29.630 0.00 0.00 0.00 2.10
2645 10729 9.822185 ATTCATAAACCAAAAAGCATCTAATCC 57.178 29.630 0.00 0.00 0.00 3.01
2646 10730 7.781056 TCATAAACCAAAAAGCATCTAATCCC 58.219 34.615 0.00 0.00 0.00 3.85
2647 10731 7.619302 TCATAAACCAAAAAGCATCTAATCCCT 59.381 33.333 0.00 0.00 0.00 4.20
2648 10732 5.921962 AACCAAAAAGCATCTAATCCCTC 57.078 39.130 0.00 0.00 0.00 4.30
2649 10733 4.281657 ACCAAAAAGCATCTAATCCCTCC 58.718 43.478 0.00 0.00 0.00 4.30
2650 10734 3.638627 CCAAAAAGCATCTAATCCCTCCC 59.361 47.826 0.00 0.00 0.00 4.30
2651 10735 3.602205 AAAAGCATCTAATCCCTCCCC 57.398 47.619 0.00 0.00 0.00 4.81
2652 10736 1.450360 AAGCATCTAATCCCTCCCCC 58.550 55.000 0.00 0.00 0.00 5.40
2667 10751 3.835810 CCCCCTGATTTCAGATGGG 57.164 57.895 16.07 16.07 46.59 4.00
2668 10752 3.835810 CCCCTGATTTCAGATGGGG 57.164 57.895 9.15 8.38 46.59 4.96
2669 10753 0.186873 CCCCTGATTTCAGATGGGGG 59.813 60.000 12.57 9.95 46.59 5.40
2670 10754 1.225373 CCCTGATTTCAGATGGGGGA 58.775 55.000 9.15 0.00 46.59 4.81
2671 10755 1.785208 CCCTGATTTCAGATGGGGGAT 59.215 52.381 9.15 0.00 46.59 3.85
2672 10756 2.490351 CCCTGATTTCAGATGGGGGATG 60.490 54.545 9.15 0.00 46.59 3.51
2673 10757 2.444388 CCTGATTTCAGATGGGGGATGA 59.556 50.000 9.15 0.00 46.59 2.92
2674 10758 3.498121 CCTGATTTCAGATGGGGGATGAG 60.498 52.174 9.15 0.00 46.59 2.90
2675 10759 2.444388 TGATTTCAGATGGGGGATGAGG 59.556 50.000 0.00 0.00 0.00 3.86
2676 10760 1.225373 TTTCAGATGGGGGATGAGGG 58.775 55.000 0.00 0.00 0.00 4.30
2677 10761 0.346574 TTCAGATGGGGGATGAGGGA 59.653 55.000 0.00 0.00 0.00 4.20
2678 10762 0.104777 TCAGATGGGGGATGAGGGAG 60.105 60.000 0.00 0.00 0.00 4.30
2679 10763 0.104777 CAGATGGGGGATGAGGGAGA 60.105 60.000 0.00 0.00 0.00 3.71
2680 10764 0.880357 AGATGGGGGATGAGGGAGAT 59.120 55.000 0.00 0.00 0.00 2.75
2681 10765 0.990374 GATGGGGGATGAGGGAGATG 59.010 60.000 0.00 0.00 0.00 2.90
2682 10766 1.138863 ATGGGGGATGAGGGAGATGC 61.139 60.000 0.00 0.00 0.00 3.91
2683 10767 1.463018 GGGGGATGAGGGAGATGCT 60.463 63.158 0.00 0.00 0.00 3.79
2684 10768 1.064824 GGGGGATGAGGGAGATGCTT 61.065 60.000 0.00 0.00 0.00 3.91
2685 10769 0.849417 GGGGATGAGGGAGATGCTTT 59.151 55.000 0.00 0.00 0.00 3.51
2686 10770 1.478288 GGGGATGAGGGAGATGCTTTG 60.478 57.143 0.00 0.00 0.00 2.77
2687 10771 1.213926 GGGATGAGGGAGATGCTTTGT 59.786 52.381 0.00 0.00 0.00 2.83
2688 10772 2.295885 GGATGAGGGAGATGCTTTGTG 58.704 52.381 0.00 0.00 0.00 3.33
2689 10773 2.092753 GGATGAGGGAGATGCTTTGTGA 60.093 50.000 0.00 0.00 0.00 3.58
2690 10774 3.434739 GGATGAGGGAGATGCTTTGTGAT 60.435 47.826 0.00 0.00 0.00 3.06
2691 10775 3.726557 TGAGGGAGATGCTTTGTGATT 57.273 42.857 0.00 0.00 0.00 2.57
2692 10776 4.038271 TGAGGGAGATGCTTTGTGATTT 57.962 40.909 0.00 0.00 0.00 2.17
2693 10777 3.760151 TGAGGGAGATGCTTTGTGATTTG 59.240 43.478 0.00 0.00 0.00 2.32
2694 10778 3.760684 GAGGGAGATGCTTTGTGATTTGT 59.239 43.478 0.00 0.00 0.00 2.83
2695 10779 3.508793 AGGGAGATGCTTTGTGATTTGTG 59.491 43.478 0.00 0.00 0.00 3.33
2696 10780 3.507233 GGGAGATGCTTTGTGATTTGTGA 59.493 43.478 0.00 0.00 0.00 3.58
2697 10781 4.022068 GGGAGATGCTTTGTGATTTGTGAA 60.022 41.667 0.00 0.00 0.00 3.18
2698 10782 5.337009 GGGAGATGCTTTGTGATTTGTGAAT 60.337 40.000 0.00 0.00 0.00 2.57
2699 10783 5.575606 GGAGATGCTTTGTGATTTGTGAATG 59.424 40.000 0.00 0.00 0.00 2.67
2700 10784 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
2701 10785 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
2702 10786 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
2703 10787 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
2711 10795 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
2712 10796 0.447801 GTGAATGCCACGTGTCATCC 59.552 55.000 13.12 0.00 35.86 3.51
2713 10797 1.018752 TGAATGCCACGTGTCATCCG 61.019 55.000 13.12 0.00 0.00 4.18
2714 10798 1.003839 AATGCCACGTGTCATCCGT 60.004 52.632 13.12 0.00 39.52 4.69
2715 10799 1.019278 AATGCCACGTGTCATCCGTC 61.019 55.000 13.12 0.00 36.17 4.79
2716 10800 2.048597 GCCACGTGTCATCCGTCA 60.049 61.111 15.65 0.00 36.17 4.35
2717 10801 2.094659 GCCACGTGTCATCCGTCAG 61.095 63.158 15.65 0.00 36.17 3.51
2718 10802 1.446099 CCACGTGTCATCCGTCAGG 60.446 63.158 15.65 0.00 36.17 3.86
2719 10803 1.446099 CACGTGTCATCCGTCAGGG 60.446 63.158 7.58 0.00 36.17 4.45
2720 10804 1.906824 ACGTGTCATCCGTCAGGGT 60.907 57.895 0.00 0.00 38.33 4.34
2725 10809 2.584608 CATCCGTCAGGGTGGGTC 59.415 66.667 0.00 0.00 44.95 4.46
2726 10810 1.990060 CATCCGTCAGGGTGGGTCT 60.990 63.158 0.00 0.00 44.95 3.85
2727 10811 1.686110 ATCCGTCAGGGTGGGTCTC 60.686 63.158 0.00 0.00 38.33 3.36
2728 10812 2.455960 ATCCGTCAGGGTGGGTCTCA 62.456 60.000 0.00 0.00 38.33 3.27
2729 10813 2.657237 CGTCAGGGTGGGTCTCAC 59.343 66.667 0.00 0.00 45.34 3.51
2742 10826 6.174720 GTGGGTCTCACCTGAATTATATGA 57.825 41.667 0.00 0.00 40.39 2.15
2743 10827 6.226787 GTGGGTCTCACCTGAATTATATGAG 58.773 44.000 0.00 0.00 40.39 2.90
2744 10828 6.042093 GTGGGTCTCACCTGAATTATATGAGA 59.958 42.308 0.00 6.95 42.63 3.27
2748 10832 7.295322 TCTCACCTGAATTATATGAGACCTG 57.705 40.000 6.95 0.00 40.59 4.00
2749 10833 6.268617 TCTCACCTGAATTATATGAGACCTGG 59.731 42.308 6.95 0.00 40.59 4.45
2750 10834 5.905331 TCACCTGAATTATATGAGACCTGGT 59.095 40.000 0.00 0.00 0.00 4.00
2751 10835 6.042093 TCACCTGAATTATATGAGACCTGGTC 59.958 42.308 19.20 19.20 0.00 4.02
2752 10836 6.042552 CACCTGAATTATATGAGACCTGGTCT 59.957 42.308 28.70 28.70 46.42 3.85
2769 10853 6.992715 ACCTGGTCTCATAGAATTATTTTCCG 59.007 38.462 0.00 0.00 0.00 4.30
2779 10863 6.699575 AGAATTATTTTCCGACCTCCATTG 57.300 37.500 0.00 0.00 0.00 2.82
2886 11111 8.877779 GGATATATTTGAGATCCATCGACAAAG 58.122 37.037 14.95 0.00 44.29 2.77
2887 11112 9.645059 GATATATTTGAGATCCATCGACAAAGA 57.355 33.333 14.95 12.50 39.30 2.52
2888 11113 7.721286 ATATTTGAGATCCATCGACAAAGAC 57.279 36.000 14.95 0.00 39.30 3.01
2889 11114 3.526931 TGAGATCCATCGACAAAGACC 57.473 47.619 0.00 0.00 0.00 3.85
2890 11115 2.168521 TGAGATCCATCGACAAAGACCC 59.831 50.000 0.00 0.00 0.00 4.46
2891 11116 2.432510 GAGATCCATCGACAAAGACCCT 59.567 50.000 0.00 0.00 0.00 4.34
2892 11117 2.840651 AGATCCATCGACAAAGACCCTT 59.159 45.455 0.00 0.00 0.00 3.95
2893 11118 3.264450 AGATCCATCGACAAAGACCCTTT 59.736 43.478 0.00 0.00 0.00 3.11
2894 11119 2.778299 TCCATCGACAAAGACCCTTTG 58.222 47.619 15.48 15.48 35.64 2.77
2895 11120 2.370519 TCCATCGACAAAGACCCTTTGA 59.629 45.455 21.82 4.58 33.83 2.69
2896 11121 2.744202 CCATCGACAAAGACCCTTTGAG 59.256 50.000 21.82 15.62 33.83 3.02
2937 11242 2.308690 AGTAGGAGTACCTTCCATCGC 58.691 52.381 4.14 0.00 45.36 4.58
2967 11289 5.695851 ACACCATGCATAATTAGCTTAGC 57.304 39.130 0.00 0.00 0.00 3.09
2969 11291 6.533730 ACACCATGCATAATTAGCTTAGCTA 58.466 36.000 10.21 10.21 40.44 3.32
2971 11293 6.652481 CACCATGCATAATTAGCTTAGCTACT 59.348 38.462 14.08 5.81 41.12 2.57
2972 11294 6.876257 ACCATGCATAATTAGCTTAGCTACTC 59.124 38.462 14.08 0.00 41.12 2.59
2974 11296 8.253810 CCATGCATAATTAGCTTAGCTACTCTA 58.746 37.037 14.08 6.08 41.12 2.43
2975 11297 9.645059 CATGCATAATTAGCTTAGCTACTCTAA 57.355 33.333 14.08 13.30 41.12 2.10
3001 11323 8.994429 TTACAATAAAAATAATGTGTGGCTGG 57.006 30.769 0.00 0.00 0.00 4.85
3002 11324 6.405538 ACAATAAAAATAATGTGTGGCTGGG 58.594 36.000 0.00 0.00 0.00 4.45
3003 11325 6.013812 ACAATAAAAATAATGTGTGGCTGGGT 60.014 34.615 0.00 0.00 0.00 4.51
3004 11326 4.535526 AAAAATAATGTGTGGCTGGGTC 57.464 40.909 0.00 0.00 0.00 4.46
3005 11327 1.750193 AATAATGTGTGGCTGGGTCG 58.250 50.000 0.00 0.00 0.00 4.79
3006 11328 0.748005 ATAATGTGTGGCTGGGTCGC 60.748 55.000 0.00 0.00 0.00 5.19
3007 11329 2.118233 TAATGTGTGGCTGGGTCGCA 62.118 55.000 0.00 0.00 0.00 5.10
3010 11332 4.314440 TGTGGCTGGGTCGCAGTC 62.314 66.667 14.25 14.25 0.00 3.51
3025 11347 5.306532 TCGCAGTCGACTAAGATTTAACT 57.693 39.130 19.57 0.00 40.21 2.24
3026 11348 6.426980 TCGCAGTCGACTAAGATTTAACTA 57.573 37.500 19.57 0.00 40.21 2.24
3027 11349 6.845302 TCGCAGTCGACTAAGATTTAACTAA 58.155 36.000 19.57 0.00 40.21 2.24
3030 11352 7.044836 CGCAGTCGACTAAGATTTAACTAAGTC 60.045 40.741 19.57 0.00 38.10 3.01
3031 11353 7.969508 GCAGTCGACTAAGATTTAACTAAGTCT 59.030 37.037 19.57 0.00 34.28 3.24
3032 11354 9.843334 CAGTCGACTAAGATTTAACTAAGTCTT 57.157 33.333 19.57 10.81 42.46 3.01
3099 11585 2.900122 AAATTGCACGGATCTTCACG 57.100 45.000 0.00 0.00 0.00 4.35
3100 11586 1.808411 AATTGCACGGATCTTCACGT 58.192 45.000 0.00 0.00 45.25 4.49
3101 11587 2.665649 ATTGCACGGATCTTCACGTA 57.334 45.000 0.00 0.00 42.04 3.57
3103 11589 1.990799 TGCACGGATCTTCACGTAAG 58.009 50.000 0.00 0.00 42.04 2.34
3118 11604 9.447040 TCTTCACGTAAGATCAAACGAATATAG 57.553 33.333 21.98 12.80 39.36 1.31
3119 11605 7.618964 TCACGTAAGATCAAACGAATATAGC 57.381 36.000 21.98 0.00 41.55 2.97
3120 11606 7.197703 TCACGTAAGATCAAACGAATATAGCA 58.802 34.615 21.98 0.00 41.55 3.49
3121 11607 7.166970 TCACGTAAGATCAAACGAATATAGCAC 59.833 37.037 21.98 0.00 41.55 4.40
3122 11608 6.420008 ACGTAAGATCAAACGAATATAGCACC 59.580 38.462 21.98 0.00 41.55 5.01
3123 11609 5.907197 AAGATCAAACGAATATAGCACCG 57.093 39.130 0.00 0.00 0.00 4.94
3124 11610 5.196341 AGATCAAACGAATATAGCACCGA 57.804 39.130 0.00 0.00 0.00 4.69
3125 11611 4.982916 AGATCAAACGAATATAGCACCGAC 59.017 41.667 0.00 0.00 0.00 4.79
3126 11612 3.450578 TCAAACGAATATAGCACCGACC 58.549 45.455 0.00 0.00 0.00 4.79
3127 11613 2.129823 AACGAATATAGCACCGACCG 57.870 50.000 0.00 0.00 0.00 4.79
3128 11614 1.311859 ACGAATATAGCACCGACCGA 58.688 50.000 0.00 0.00 0.00 4.69
3129 11615 1.266175 ACGAATATAGCACCGACCGAG 59.734 52.381 0.00 0.00 0.00 4.63
3130 11616 1.534163 CGAATATAGCACCGACCGAGA 59.466 52.381 0.00 0.00 0.00 4.04
3131 11617 2.664971 CGAATATAGCACCGACCGAGAC 60.665 54.545 0.00 0.00 0.00 3.36
3132 11618 1.977056 ATATAGCACCGACCGAGACA 58.023 50.000 0.00 0.00 0.00 3.41
3133 11619 1.977056 TATAGCACCGACCGAGACAT 58.023 50.000 0.00 0.00 0.00 3.06
3134 11620 1.977056 ATAGCACCGACCGAGACATA 58.023 50.000 0.00 0.00 0.00 2.29
3135 11621 1.753930 TAGCACCGACCGAGACATAA 58.246 50.000 0.00 0.00 0.00 1.90
3137 11623 0.804933 GCACCGACCGAGACATAACC 60.805 60.000 0.00 0.00 0.00 2.85
3141 11627 1.202268 CCGACCGAGACATAACCAGAC 60.202 57.143 0.00 0.00 0.00 3.51
3143 11629 2.163815 CGACCGAGACATAACCAGACTT 59.836 50.000 0.00 0.00 0.00 3.01
3144 11630 3.731264 CGACCGAGACATAACCAGACTTC 60.731 52.174 0.00 0.00 0.00 3.01
3145 11631 3.162666 ACCGAGACATAACCAGACTTCA 58.837 45.455 0.00 0.00 0.00 3.02
3147 11633 3.056821 CCGAGACATAACCAGACTTCACA 60.057 47.826 0.00 0.00 0.00 3.58
3148 11634 4.556233 CGAGACATAACCAGACTTCACAA 58.444 43.478 0.00 0.00 0.00 3.33
3187 11682 4.035558 CCGCATGTAATTAAGCATGTCACT 59.964 41.667 14.27 0.00 43.04 3.41
3188 11683 5.449041 CCGCATGTAATTAAGCATGTCACTT 60.449 40.000 14.27 0.00 43.04 3.16
3190 11685 6.457392 CGCATGTAATTAAGCATGTCACTTCT 60.457 38.462 14.27 0.00 43.04 2.85
3191 11686 7.253422 GCATGTAATTAAGCATGTCACTTCTT 58.747 34.615 14.27 0.00 43.04 2.52
3193 11688 7.744087 TGTAATTAAGCATGTCACTTCTTGT 57.256 32.000 0.00 0.00 0.00 3.16
3194 11689 8.840833 TGTAATTAAGCATGTCACTTCTTGTA 57.159 30.769 0.00 0.00 0.00 2.41
3195 11690 8.935844 TGTAATTAAGCATGTCACTTCTTGTAG 58.064 33.333 0.00 0.00 0.00 2.74
3196 11691 5.862924 TTAAGCATGTCACTTCTTGTAGC 57.137 39.130 0.00 0.00 0.00 3.58
3198 11693 2.029020 AGCATGTCACTTCTTGTAGCGA 60.029 45.455 0.00 0.00 0.00 4.93
3200 11695 2.433868 TGTCACTTCTTGTAGCGACC 57.566 50.000 0.00 0.00 0.00 4.79
3204 11699 1.810030 CTTCTTGTAGCGACCGGCC 60.810 63.158 0.00 0.00 45.17 6.13
3205 11700 3.636313 TTCTTGTAGCGACCGGCCG 62.636 63.158 21.04 21.04 45.17 6.13
3206 11701 4.124351 CTTGTAGCGACCGGCCGA 62.124 66.667 30.73 0.90 45.17 5.54
3207 11702 4.124351 TTGTAGCGACCGGCCGAG 62.124 66.667 30.73 19.69 45.17 4.63
3217 11712 2.031163 CGGCCGAGGGGAATGATC 59.969 66.667 24.07 0.00 34.06 2.92
3219 11714 1.531748 GGCCGAGGGGAATGATCAA 59.468 57.895 0.00 0.00 34.06 2.57
3220 11715 0.106719 GGCCGAGGGGAATGATCAAA 60.107 55.000 0.00 0.00 34.06 2.69
3226 11721 4.947388 CCGAGGGGAATGATCAAAGTTAAA 59.053 41.667 0.00 0.00 34.06 1.52
3227 11722 5.417580 CCGAGGGGAATGATCAAAGTTAAAA 59.582 40.000 0.00 0.00 34.06 1.52
3228 11723 6.404734 CCGAGGGGAATGATCAAAGTTAAAAG 60.405 42.308 0.00 0.00 34.06 2.27
3229 11724 6.151144 CGAGGGGAATGATCAAAGTTAAAAGT 59.849 38.462 0.00 0.00 0.00 2.66
3230 11725 7.335924 CGAGGGGAATGATCAAAGTTAAAAGTA 59.664 37.037 0.00 0.00 0.00 2.24
3233 11728 9.639601 GGGGAATGATCAAAGTTAAAAGTAAAG 57.360 33.333 0.00 0.00 0.00 1.85
3238 11733 9.981114 ATGATCAAAGTTAAAAGTAAAGTTGGG 57.019 29.630 0.00 0.00 0.00 4.12
3239 11734 7.923878 TGATCAAAGTTAAAAGTAAAGTTGGGC 59.076 33.333 0.00 0.00 0.00 5.36
3240 11735 7.171630 TCAAAGTTAAAAGTAAAGTTGGGCA 57.828 32.000 0.00 0.00 0.00 5.36
3241 11736 7.612677 TCAAAGTTAAAAGTAAAGTTGGGCAA 58.387 30.769 0.00 0.00 0.00 4.52
3242 11737 8.095169 TCAAAGTTAAAAGTAAAGTTGGGCAAA 58.905 29.630 0.00 0.00 0.00 3.68
3243 11738 8.888716 CAAAGTTAAAAGTAAAGTTGGGCAAAT 58.111 29.630 0.00 0.00 0.00 2.32
3248 11743 9.713713 TTAAAAGTAAAGTTGGGCAAATAATCC 57.286 29.630 0.00 0.00 0.00 3.01
3249 11744 6.926630 AAGTAAAGTTGGGCAAATAATCCA 57.073 33.333 0.00 0.00 0.00 3.41
3250 11745 7.494922 AAGTAAAGTTGGGCAAATAATCCAT 57.505 32.000 0.00 0.00 0.00 3.41
3251 11746 7.494922 AGTAAAGTTGGGCAAATAATCCATT 57.505 32.000 0.00 0.00 0.00 3.16
3252 11747 7.917003 AGTAAAGTTGGGCAAATAATCCATTT 58.083 30.769 0.00 0.00 37.32 2.32
3253 11748 8.382405 AGTAAAGTTGGGCAAATAATCCATTTT 58.618 29.630 0.00 0.00 34.49 1.82
3254 11749 7.686438 AAAGTTGGGCAAATAATCCATTTTC 57.314 32.000 0.00 0.00 34.49 2.29
3255 11750 6.625532 AGTTGGGCAAATAATCCATTTTCT 57.374 33.333 0.00 0.00 34.49 2.52
3298 11867 8.563123 TGTAAATTAATTGACGGTGTTATCCA 57.437 30.769 10.52 0.00 0.00 3.41
3530 12109 2.665000 CAGCGAGAAGGCCAAGGA 59.335 61.111 5.01 0.00 0.00 3.36
3612 12218 1.376086 CATGGGCCGCTCATCCATA 59.624 57.895 1.60 0.00 39.07 2.74
3670 12276 4.363990 CGTCAGCGCTGGACCACT 62.364 66.667 35.36 0.00 31.55 4.00
3744 12353 3.842923 CTCCCACCGCTCGAGCAT 61.843 66.667 34.69 20.82 42.21 3.79
3748 12357 2.125952 CACCGCTCGAGCATGTCA 60.126 61.111 34.69 0.00 42.21 3.58
3798 12410 1.185618 AGTACAGCAGCGACTGGGAA 61.186 55.000 12.74 0.00 42.21 3.97
3807 12419 1.431440 CGACTGGGAAGCTCTCGAG 59.569 63.158 5.93 5.93 0.00 4.04
3849 12461 1.987855 CGGCCTCTCTAACCCCACA 60.988 63.158 0.00 0.00 0.00 4.17
3854 12466 1.552486 CCTCTCTAACCCCACACTGGA 60.552 57.143 0.00 0.00 40.96 3.86
3916 12528 2.368011 GGTGCCACCTCCTACTCCC 61.368 68.421 6.63 0.00 34.73 4.30
3920 12532 2.439701 CACCTCCTACTCCCGCGA 60.440 66.667 8.23 0.00 0.00 5.87
3952 12564 1.229529 ATTCCCTCTGTCACCGGGT 60.230 57.895 6.32 0.00 39.10 5.28
3956 12568 2.675423 CTCTGTCACCGGGTCCGA 60.675 66.667 11.39 0.00 42.83 4.55
4004 12617 1.154093 CGGTGTCATCGCTACACGT 60.154 57.895 0.00 0.00 46.57 4.49
4008 12621 2.159476 GGTGTCATCGCTACACGTAGAA 60.159 50.000 8.41 0.00 46.57 2.10
4018 12631 3.486108 GCTACACGTAGAATTGACGATGG 59.514 47.826 14.62 6.88 42.98 3.51
4058 12674 0.542938 TGCTGACACTGTCCTAGCCT 60.543 55.000 15.45 0.00 32.78 4.58
4062 12678 3.306780 GCTGACACTGTCCTAGCCTAAAA 60.307 47.826 6.72 0.00 29.14 1.52
4066 12682 5.221843 TGACACTGTCCTAGCCTAAAATTGT 60.222 40.000 6.72 0.00 0.00 2.71
4067 12683 5.003804 ACACTGTCCTAGCCTAAAATTGTG 58.996 41.667 0.00 0.00 0.00 3.33
4068 12684 4.396166 CACTGTCCTAGCCTAAAATTGTGG 59.604 45.833 0.00 0.00 0.00 4.17
4120 13098 6.923670 ACCTAAGATAGAGGAGGTCATACAA 58.076 40.000 0.00 0.00 37.83 2.41
4232 13214 0.540830 AGTGCCTCTTCGTCCTGACT 60.541 55.000 0.00 0.00 0.00 3.41
4248 13232 4.426023 TCCTGACTCCTTTATATACCCCCT 59.574 45.833 0.00 0.00 0.00 4.79
4272 13510 3.373830 CCCAACCCAACCATGAATATGT 58.626 45.455 0.00 0.00 32.21 2.29
4292 13530 2.251642 GGAACTTTCGCACCGCTGT 61.252 57.895 0.00 0.00 0.00 4.40
4307 13545 2.158449 CCGCTGTCTCATCAACTTTGTC 59.842 50.000 0.00 0.00 0.00 3.18
4319 13557 0.249699 ACTTTGTCGCACCGATGACA 60.250 50.000 0.00 0.00 42.98 3.58
4382 13625 1.143684 GCTTATTGGCATCTCTCCCCA 59.856 52.381 0.00 0.00 0.00 4.96
4411 13654 9.014297 TCTTCGATACAAATATCTCATGAGCTA 57.986 33.333 18.36 13.29 35.88 3.32
4427 13670 7.503549 TCATGAGCTATCTAACATGATTGTGT 58.496 34.615 8.92 0.00 42.31 3.72
4428 13671 7.440255 TCATGAGCTATCTAACATGATTGTGTG 59.560 37.037 8.92 0.00 42.31 3.82
4529 14072 6.577103 TGTTTTGGTTCTTTGTTGCATGATA 58.423 32.000 0.00 0.00 0.00 2.15
4580 14123 0.385974 CTTGCACTAGCCACGTTTGC 60.386 55.000 0.00 0.00 41.13 3.68
4583 14126 0.240945 GCACTAGCCACGTTTGCATT 59.759 50.000 9.31 0.00 33.24 3.56
4626 14169 5.896073 TTTGGATGTTGGTTGGGTTTAAT 57.104 34.783 0.00 0.00 0.00 1.40
4642 14185 9.681062 TTGGGTTTAATCTTCCAAGTAATCTAG 57.319 33.333 0.00 0.00 34.71 2.43
4721 14264 8.591114 AAACAAGATAGTAGCCTAGTTGTCTA 57.409 34.615 0.00 0.00 35.08 2.59
4760 14303 9.654663 AAGGTAAAGAGAATGTACTATCAACAC 57.345 33.333 0.00 0.00 0.00 3.32
4840 14483 7.647907 ATGATGAATTTTGTTCTTGAAGTGC 57.352 32.000 0.00 0.00 0.00 4.40
4842 14485 6.476380 TGATGAATTTTGTTCTTGAAGTGCAC 59.524 34.615 9.40 9.40 0.00 4.57
4843 14486 5.718146 TGAATTTTGTTCTTGAAGTGCACA 58.282 33.333 21.04 0.00 0.00 4.57
4849 14492 6.449635 TTGTTCTTGAAGTGCACAATTAGT 57.550 33.333 21.04 0.00 0.00 2.24
5025 15811 2.350484 GCTTTTGCCGAGGTGAAGTTAC 60.350 50.000 0.00 0.00 40.15 2.50
5028 15814 1.334160 TGCCGAGGTGAAGTTACTCA 58.666 50.000 0.00 0.00 0.00 3.41
5032 15818 2.186076 CGAGGTGAAGTTACTCATCGC 58.814 52.381 0.00 0.00 32.82 4.58
5040 15826 0.454600 GTTACTCATCGCCGAGTGGA 59.545 55.000 14.60 3.36 45.79 4.02
5059 15845 6.835174 AGTGGATTGCACACTCATCTTATAT 58.165 36.000 11.08 0.00 45.50 0.86
5068 15854 7.121020 TGCACACTCATCTTATATGCTTTTTGA 59.879 33.333 0.00 0.00 32.81 2.69
5088 15874 3.319405 TGATGTTGTGTTAATTTGCCGGT 59.681 39.130 1.90 0.00 0.00 5.28
5097 15883 0.532115 AATTTGCCGGTCAGAATGCC 59.468 50.000 1.90 0.00 34.76 4.40
5110 15896 1.205893 AGAATGCCGGAGAGTTCTGTC 59.794 52.381 5.05 0.00 30.27 3.51
5111 15897 1.205893 GAATGCCGGAGAGTTCTGTCT 59.794 52.381 5.05 0.00 0.00 3.41
5112 15898 1.270907 ATGCCGGAGAGTTCTGTCTT 58.729 50.000 5.05 0.00 0.00 3.01
5113 15899 0.603569 TGCCGGAGAGTTCTGTCTTC 59.396 55.000 5.05 0.00 0.00 2.87
5114 15900 0.892063 GCCGGAGAGTTCTGTCTTCT 59.108 55.000 5.05 0.00 0.00 2.85
5115 15901 1.135228 GCCGGAGAGTTCTGTCTTCTC 60.135 57.143 5.05 0.00 0.00 2.87
5116 15902 1.131504 CCGGAGAGTTCTGTCTTCTCG 59.868 57.143 0.00 0.00 33.96 4.04
5117 15903 1.131504 CGGAGAGTTCTGTCTTCTCGG 59.868 57.143 0.00 0.00 33.96 4.63
5118 15904 2.164338 GGAGAGTTCTGTCTTCTCGGT 58.836 52.381 0.00 0.00 33.96 4.69
5119 15905 2.094957 GGAGAGTTCTGTCTTCTCGGTG 60.095 54.545 0.00 0.00 33.96 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
429 871 4.038282 TCAGTTTTCGTTGGAGCAGTACTA 59.962 41.667 0.00 0.00 0.00 1.82
430 872 3.131396 CAGTTTTCGTTGGAGCAGTACT 58.869 45.455 0.00 0.00 0.00 2.73
431 873 3.128349 TCAGTTTTCGTTGGAGCAGTAC 58.872 45.455 0.00 0.00 0.00 2.73
432 874 3.390135 CTCAGTTTTCGTTGGAGCAGTA 58.610 45.455 0.00 0.00 0.00 2.74
433 875 2.213499 CTCAGTTTTCGTTGGAGCAGT 58.787 47.619 0.00 0.00 0.00 4.40
434 876 2.957576 CTCAGTTTTCGTTGGAGCAG 57.042 50.000 0.00 0.00 0.00 4.24
436 878 3.755697 GCTCAGTTTTCGTTGGAGC 57.244 52.632 0.00 0.00 43.41 4.70
599 1094 4.376920 CGTTCATGTTCATGCTTGACGTTA 60.377 41.667 1.02 0.00 0.00 3.18
631 1126 0.391130 GTGTCTGTGCCAGCCGATTA 60.391 55.000 0.00 0.00 0.00 1.75
634 1129 2.395988 AATGTGTCTGTGCCAGCCGA 62.396 55.000 0.00 0.00 0.00 5.54
689 1313 7.913821 GTGACCTTAAAAATCTCAACGAAAACT 59.086 33.333 0.00 0.00 0.00 2.66
698 1322 4.753107 GGACACGTGACCTTAAAAATCTCA 59.247 41.667 26.57 0.00 0.00 3.27
927 1567 3.508840 GGAAACGCCGAGGCCATG 61.509 66.667 5.01 0.00 37.98 3.66
928 1568 4.796495 GGGAAACGCCGAGGCCAT 62.796 66.667 5.01 0.00 37.63 4.40
935 1575 2.202623 CTCGAGAGGGAAACGCCG 60.203 66.667 6.58 0.00 37.63 6.46
1088 1778 7.318141 AGCAACAATTGATGAAACAATCTAGG 58.682 34.615 18.88 0.00 39.19 3.02
1089 1779 9.499585 CTAGCAACAATTGATGAAACAATCTAG 57.500 33.333 18.88 12.80 39.19 2.43
1090 1780 9.013229 ACTAGCAACAATTGATGAAACAATCTA 57.987 29.630 18.88 7.97 39.19 1.98
1091 1781 7.889469 ACTAGCAACAATTGATGAAACAATCT 58.111 30.769 18.88 7.29 39.19 2.40
1092 1782 8.430063 CAACTAGCAACAATTGATGAAACAATC 58.570 33.333 18.88 0.17 39.19 2.67
1093 1783 7.927629 ACAACTAGCAACAATTGATGAAACAAT 59.072 29.630 18.88 0.00 41.43 2.71
1138 1884 2.012673 GCTGTAGCTGGAGTGAAATGG 58.987 52.381 0.00 0.00 38.21 3.16
1203 2003 1.134098 GTCGATGGTGGATGGGTGAAT 60.134 52.381 0.00 0.00 0.00 2.57
1204 2004 0.251916 GTCGATGGTGGATGGGTGAA 59.748 55.000 0.00 0.00 0.00 3.18
1206 2006 1.153168 GGTCGATGGTGGATGGGTG 60.153 63.158 0.00 0.00 0.00 4.61
1208 2008 0.535780 CATGGTCGATGGTGGATGGG 60.536 60.000 0.00 0.00 0.00 4.00
1209 2009 0.469494 TCATGGTCGATGGTGGATGG 59.531 55.000 0.00 0.00 32.26 3.51
1210 2010 1.875009 CTCATGGTCGATGGTGGATG 58.125 55.000 0.00 0.00 32.26 3.51
1214 2023 1.202615 AGATGCTCATGGTCGATGGTG 60.203 52.381 0.00 0.00 32.26 4.17
1556 2444 3.580193 CGCGTCCCCGTCGAGTAT 61.580 66.667 0.00 0.00 36.28 2.12
1762 2650 1.527380 GCAAAGACGGGGTTGGTCA 60.527 57.895 0.00 0.00 36.87 4.02
1916 2852 9.292846 TGCATTTATATATATTCGTACGTGGTC 57.707 33.333 16.05 0.00 0.00 4.02
1978 2914 7.976414 TTGGAAAGAATTCATTATGGACCAT 57.024 32.000 12.67 12.67 37.29 3.55
1980 2916 8.066612 TCTTTGGAAAGAATTCATTATGGACC 57.933 34.615 8.44 0.00 41.75 4.46
2006 2942 4.076394 CTCCCTCCGTTCCAAAATGTAAA 58.924 43.478 0.00 0.00 0.00 2.01
2015 2951 2.024655 ACATACTACTCCCTCCGTTCCA 60.025 50.000 0.00 0.00 0.00 3.53
2068 3019 0.525668 ACCACTCGCGAGCTATTTCG 60.526 55.000 34.83 16.28 43.23 3.46
2159 8359 5.011125 CCATCCGGACATAATCTTCACTACT 59.989 44.000 6.12 0.00 0.00 2.57
2180 8402 0.789687 TTCCCATTCCCAACCACCAT 59.210 50.000 0.00 0.00 0.00 3.55
2390 9508 8.211629 AGGAACACTAAATCGGATTTATAGCTT 58.788 33.333 20.23 11.15 34.50 3.74
2391 9509 7.736893 AGGAACACTAAATCGGATTTATAGCT 58.263 34.615 20.23 9.69 34.50 3.32
2392 9510 7.964604 AGGAACACTAAATCGGATTTATAGC 57.035 36.000 20.23 10.35 34.50 2.97
2454 9596 7.066404 ACCAGTAGCAGACATATATGATCGTAG 59.934 40.741 19.63 9.32 0.00 3.51
2487 10346 0.742505 CTCCGCATGCAAATGTCCAT 59.257 50.000 19.57 0.00 0.00 3.41
2534 10618 0.178861 AGGGTGGGTCTCATCAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
2535 10619 0.911525 CAGGGTGGGTCTCATCAGGT 60.912 60.000 0.00 0.00 0.00 4.00
2536 10620 0.618680 TCAGGGTGGGTCTCATCAGG 60.619 60.000 0.00 0.00 0.00 3.86
2537 10621 1.279496 TTCAGGGTGGGTCTCATCAG 58.721 55.000 0.00 0.00 0.00 2.90
2538 10622 1.741028 TTTCAGGGTGGGTCTCATCA 58.259 50.000 0.00 0.00 0.00 3.07
2539 10623 3.372440 AATTTCAGGGTGGGTCTCATC 57.628 47.619 0.00 0.00 0.00 2.92
2540 10624 6.332635 TCATATAATTTCAGGGTGGGTCTCAT 59.667 38.462 0.00 0.00 0.00 2.90
2541 10625 5.669904 TCATATAATTTCAGGGTGGGTCTCA 59.330 40.000 0.00 0.00 0.00 3.27
2542 10626 6.043243 TCTCATATAATTTCAGGGTGGGTCTC 59.957 42.308 0.00 0.00 0.00 3.36
2543 10627 5.911178 TCTCATATAATTTCAGGGTGGGTCT 59.089 40.000 0.00 0.00 0.00 3.85
2544 10628 5.998363 GTCTCATATAATTTCAGGGTGGGTC 59.002 44.000 0.00 0.00 0.00 4.46
2545 10629 5.163088 GGTCTCATATAATTTCAGGGTGGGT 60.163 44.000 0.00 0.00 0.00 4.51
2546 10630 5.163099 TGGTCTCATATAATTTCAGGGTGGG 60.163 44.000 0.00 0.00 0.00 4.61
2547 10631 5.940617 TGGTCTCATATAATTTCAGGGTGG 58.059 41.667 0.00 0.00 0.00 4.61
2548 10632 6.000219 CCTGGTCTCATATAATTTCAGGGTG 59.000 44.000 0.00 0.00 37.47 4.61
2549 10633 5.672194 ACCTGGTCTCATATAATTTCAGGGT 59.328 40.000 10.26 0.00 43.30 4.34
2550 10634 6.043706 AGACCTGGTCTCATATAATTTCAGGG 59.956 42.308 23.49 0.00 38.71 4.45
2551 10635 7.072263 AGACCTGGTCTCATATAATTTCAGG 57.928 40.000 23.49 0.00 38.71 3.86
2565 10649 4.528596 CCCGAATTATATGAGACCTGGTCT 59.471 45.833 28.70 28.70 46.42 3.85
2566 10650 4.283722 ACCCGAATTATATGAGACCTGGTC 59.716 45.833 19.20 19.20 0.00 4.02
2567 10651 4.040461 CACCCGAATTATATGAGACCTGGT 59.960 45.833 0.00 0.00 0.00 4.00
2568 10652 4.283467 TCACCCGAATTATATGAGACCTGG 59.717 45.833 0.00 0.00 0.00 4.45
2569 10653 5.243954 TCTCACCCGAATTATATGAGACCTG 59.756 44.000 6.95 0.00 40.59 4.00
2570 10654 5.394738 TCTCACCCGAATTATATGAGACCT 58.605 41.667 6.95 0.00 40.59 3.85
2571 10655 5.723672 TCTCACCCGAATTATATGAGACC 57.276 43.478 6.95 0.00 40.59 3.85
2573 10657 5.723672 GGTCTCACCCGAATTATATGAGA 57.276 43.478 6.95 6.95 42.63 3.27
2588 10672 1.580059 TCCATTAGGGTGGGTCTCAC 58.420 55.000 0.00 0.00 45.34 3.51
2589 10673 2.126882 CATCCATTAGGGTGGGTCTCA 58.873 52.381 0.00 0.00 42.67 3.27
2590 10674 2.104963 GTCATCCATTAGGGTGGGTCTC 59.895 54.545 0.00 0.00 46.59 3.36
2591 10675 2.127708 GTCATCCATTAGGGTGGGTCT 58.872 52.381 0.00 0.00 46.59 3.85
2592 10676 1.843851 TGTCATCCATTAGGGTGGGTC 59.156 52.381 0.00 0.00 46.59 4.46
2593 10677 1.564348 GTGTCATCCATTAGGGTGGGT 59.436 52.381 0.00 0.00 46.59 4.51
2594 10678 1.475034 CGTGTCATCCATTAGGGTGGG 60.475 57.143 0.00 0.00 46.59 4.61
2595 10679 1.209504 ACGTGTCATCCATTAGGGTGG 59.790 52.381 0.00 0.00 46.59 4.61
2597 10681 1.906574 ACACGTGTCATCCATTAGGGT 59.093 47.619 17.22 0.00 38.11 4.34
2598 10682 2.550978 GACACGTGTCATCCATTAGGG 58.449 52.381 37.16 0.80 44.18 3.53
2609 10693 5.351233 TTGGTTTATGAATGACACGTGTC 57.649 39.130 36.01 36.01 44.97 3.67
2610 10694 5.759506 TTTGGTTTATGAATGACACGTGT 57.240 34.783 23.64 23.64 0.00 4.49
2611 10695 6.345723 GCTTTTTGGTTTATGAATGACACGTG 60.346 38.462 15.48 15.48 0.00 4.49
2612 10696 5.689961 GCTTTTTGGTTTATGAATGACACGT 59.310 36.000 0.00 0.00 0.00 4.49
2613 10697 5.689514 TGCTTTTTGGTTTATGAATGACACG 59.310 36.000 0.00 0.00 0.00 4.49
2614 10698 7.599998 AGATGCTTTTTGGTTTATGAATGACAC 59.400 33.333 0.00 0.00 0.00 3.67
2615 10699 7.669427 AGATGCTTTTTGGTTTATGAATGACA 58.331 30.769 0.00 0.00 0.00 3.58
2616 10700 9.638239 TTAGATGCTTTTTGGTTTATGAATGAC 57.362 29.630 0.00 0.00 0.00 3.06
2619 10703 9.822185 GGATTAGATGCTTTTTGGTTTATGAAT 57.178 29.630 0.00 0.00 0.00 2.57
2620 10704 8.257306 GGGATTAGATGCTTTTTGGTTTATGAA 58.743 33.333 0.00 0.00 0.00 2.57
2621 10705 7.619302 AGGGATTAGATGCTTTTTGGTTTATGA 59.381 33.333 0.00 0.00 0.00 2.15
2622 10706 7.785033 AGGGATTAGATGCTTTTTGGTTTATG 58.215 34.615 0.00 0.00 0.00 1.90
2623 10707 7.069950 GGAGGGATTAGATGCTTTTTGGTTTAT 59.930 37.037 0.00 0.00 0.00 1.40
2624 10708 6.379988 GGAGGGATTAGATGCTTTTTGGTTTA 59.620 38.462 0.00 0.00 0.00 2.01
2625 10709 5.187772 GGAGGGATTAGATGCTTTTTGGTTT 59.812 40.000 0.00 0.00 0.00 3.27
2626 10710 4.711846 GGAGGGATTAGATGCTTTTTGGTT 59.288 41.667 0.00 0.00 0.00 3.67
2627 10711 4.281657 GGAGGGATTAGATGCTTTTTGGT 58.718 43.478 0.00 0.00 0.00 3.67
2628 10712 3.638627 GGGAGGGATTAGATGCTTTTTGG 59.361 47.826 0.00 0.00 0.00 3.28
2629 10713 3.638627 GGGGAGGGATTAGATGCTTTTTG 59.361 47.826 0.00 0.00 0.00 2.44
2630 10714 3.374208 GGGGGAGGGATTAGATGCTTTTT 60.374 47.826 0.00 0.00 0.00 1.94
2631 10715 2.177888 GGGGGAGGGATTAGATGCTTTT 59.822 50.000 0.00 0.00 0.00 2.27
2632 10716 1.783365 GGGGGAGGGATTAGATGCTTT 59.217 52.381 0.00 0.00 0.00 3.51
2633 10717 1.450360 GGGGGAGGGATTAGATGCTT 58.550 55.000 0.00 0.00 0.00 3.91
2634 10718 3.188748 GGGGGAGGGATTAGATGCT 57.811 57.895 0.00 0.00 0.00 3.79
2649 10733 3.835810 CCCATCTGAAATCAGGGGG 57.164 57.895 19.68 19.68 45.50 5.40
2650 10734 0.186873 CCCCCATCTGAAATCAGGGG 59.813 60.000 15.26 15.26 43.91 4.79
2651 10735 1.225373 TCCCCCATCTGAAATCAGGG 58.775 55.000 10.37 5.09 43.91 4.45
2652 10736 2.444388 TCATCCCCCATCTGAAATCAGG 59.556 50.000 10.37 0.00 43.91 3.86
2653 10737 3.498121 CCTCATCCCCCATCTGAAATCAG 60.498 52.174 3.99 3.99 45.08 2.90
2654 10738 2.444388 CCTCATCCCCCATCTGAAATCA 59.556 50.000 0.00 0.00 0.00 2.57
2655 10739 2.224967 CCCTCATCCCCCATCTGAAATC 60.225 54.545 0.00 0.00 0.00 2.17
2656 10740 1.785208 CCCTCATCCCCCATCTGAAAT 59.215 52.381 0.00 0.00 0.00 2.17
2657 10741 1.225373 CCCTCATCCCCCATCTGAAA 58.775 55.000 0.00 0.00 0.00 2.69
2658 10742 0.346574 TCCCTCATCCCCCATCTGAA 59.653 55.000 0.00 0.00 0.00 3.02
2659 10743 0.104777 CTCCCTCATCCCCCATCTGA 60.105 60.000 0.00 0.00 0.00 3.27
2660 10744 0.104777 TCTCCCTCATCCCCCATCTG 60.105 60.000 0.00 0.00 0.00 2.90
2661 10745 0.880357 ATCTCCCTCATCCCCCATCT 59.120 55.000 0.00 0.00 0.00 2.90
2662 10746 0.990374 CATCTCCCTCATCCCCCATC 59.010 60.000 0.00 0.00 0.00 3.51
2663 10747 1.138863 GCATCTCCCTCATCCCCCAT 61.139 60.000 0.00 0.00 0.00 4.00
2664 10748 1.771746 GCATCTCCCTCATCCCCCA 60.772 63.158 0.00 0.00 0.00 4.96
2665 10749 1.064824 AAGCATCTCCCTCATCCCCC 61.065 60.000 0.00 0.00 0.00 5.40
2666 10750 0.849417 AAAGCATCTCCCTCATCCCC 59.151 55.000 0.00 0.00 0.00 4.81
2667 10751 1.213926 ACAAAGCATCTCCCTCATCCC 59.786 52.381 0.00 0.00 0.00 3.85
2668 10752 2.092753 TCACAAAGCATCTCCCTCATCC 60.093 50.000 0.00 0.00 0.00 3.51
2669 10753 3.272574 TCACAAAGCATCTCCCTCATC 57.727 47.619 0.00 0.00 0.00 2.92
2670 10754 3.947612 ATCACAAAGCATCTCCCTCAT 57.052 42.857 0.00 0.00 0.00 2.90
2671 10755 3.726557 AATCACAAAGCATCTCCCTCA 57.273 42.857 0.00 0.00 0.00 3.86
2672 10756 3.760684 ACAAATCACAAAGCATCTCCCTC 59.239 43.478 0.00 0.00 0.00 4.30
2673 10757 3.508793 CACAAATCACAAAGCATCTCCCT 59.491 43.478 0.00 0.00 0.00 4.20
2674 10758 3.507233 TCACAAATCACAAAGCATCTCCC 59.493 43.478 0.00 0.00 0.00 4.30
2675 10759 4.771590 TCACAAATCACAAAGCATCTCC 57.228 40.909 0.00 0.00 0.00 3.71
2676 10760 5.061808 GCATTCACAAATCACAAAGCATCTC 59.938 40.000 0.00 0.00 0.00 2.75
2677 10761 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
2678 10762 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
2679 10763 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
2680 10764 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
2681 10765 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
2682 10766 3.426191 CGTGGCATTCACAAATCACAAAG 59.574 43.478 0.00 0.00 46.36 2.77
2683 10767 3.181482 ACGTGGCATTCACAAATCACAAA 60.181 39.130 0.00 0.00 46.36 2.83
2684 10768 2.360483 ACGTGGCATTCACAAATCACAA 59.640 40.909 0.00 0.00 46.36 3.33
2685 10769 1.952990 ACGTGGCATTCACAAATCACA 59.047 42.857 0.00 0.00 46.36 3.58
2686 10770 2.287547 ACACGTGGCATTCACAAATCAC 60.288 45.455 21.57 0.00 46.36 3.06
2687 10771 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
2688 10772 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
2689 10773 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
2690 10774 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
2691 10775 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
2692 10776 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
2693 10777 0.447801 GGATGACACGTGGCATTCAC 59.552 55.000 36.07 24.74 45.42 3.18
2694 10778 1.018752 CGGATGACACGTGGCATTCA 61.019 55.000 35.98 23.15 45.42 2.57
2695 10779 1.019278 ACGGATGACACGTGGCATTC 61.019 55.000 36.07 32.94 45.42 2.67
2696 10780 1.003839 ACGGATGACACGTGGCATT 60.004 52.632 36.07 19.50 45.42 3.56
2698 10782 2.048597 GACGGATGACACGTGGCA 60.049 61.111 29.28 29.28 45.68 4.92
2699 10783 2.048597 TGACGGATGACACGTGGC 60.049 61.111 21.57 19.24 45.68 5.01
2700 10784 1.446099 CCTGACGGATGACACGTGG 60.446 63.158 21.57 2.84 45.68 4.94
2701 10785 1.446099 CCCTGACGGATGACACGTG 60.446 63.158 15.48 15.48 45.68 4.49
2703 10787 1.446099 CACCCTGACGGATGACACG 60.446 63.158 0.00 0.00 34.64 4.49
2704 10788 1.079127 CCACCCTGACGGATGACAC 60.079 63.158 0.00 0.00 34.64 3.67
2705 10789 2.290287 CCCACCCTGACGGATGACA 61.290 63.158 0.00 0.00 34.64 3.58
2706 10790 2.240162 GACCCACCCTGACGGATGAC 62.240 65.000 0.00 0.00 34.64 3.06
2707 10791 1.987855 GACCCACCCTGACGGATGA 60.988 63.158 0.00 0.00 34.64 2.92
2708 10792 1.961180 GAGACCCACCCTGACGGATG 61.961 65.000 0.00 0.00 34.64 3.51
2709 10793 1.686110 GAGACCCACCCTGACGGAT 60.686 63.158 0.00 0.00 34.64 4.18
2710 10794 2.283676 GAGACCCACCCTGACGGA 60.284 66.667 0.00 0.00 34.64 4.69
2711 10795 2.603473 TGAGACCCACCCTGACGG 60.603 66.667 0.00 0.00 37.81 4.79
2712 10796 2.657237 GTGAGACCCACCCTGACG 59.343 66.667 0.00 0.00 39.86 4.35
2719 10803 6.042093 TCTCATATAATTCAGGTGAGACCCAC 59.958 42.308 8.03 0.00 40.06 4.61
2720 10804 6.143206 TCTCATATAATTCAGGTGAGACCCA 58.857 40.000 8.03 0.00 40.06 4.51
2721 10805 6.672266 TCTCATATAATTCAGGTGAGACCC 57.328 41.667 8.03 0.00 40.06 4.46
2724 10808 6.268617 CCAGGTCTCATATAATTCAGGTGAGA 59.731 42.308 8.03 8.03 41.99 3.27
2725 10809 6.042552 ACCAGGTCTCATATAATTCAGGTGAG 59.957 42.308 0.00 0.00 38.07 3.51
2726 10810 5.905331 ACCAGGTCTCATATAATTCAGGTGA 59.095 40.000 0.00 0.00 0.00 4.02
2727 10811 6.042552 AGACCAGGTCTCATATAATTCAGGTG 59.957 42.308 17.31 0.00 38.71 4.00
2728 10812 6.146760 AGACCAGGTCTCATATAATTCAGGT 58.853 40.000 17.31 0.00 38.71 4.00
2729 10813 6.678568 AGACCAGGTCTCATATAATTCAGG 57.321 41.667 17.31 0.00 38.71 3.86
2742 10826 8.214364 GGAAAATAATTCTATGAGACCAGGTCT 58.786 37.037 23.18 23.18 46.42 3.85
2743 10827 7.171678 CGGAAAATAATTCTATGAGACCAGGTC 59.828 40.741 12.25 12.25 0.00 3.85
2744 10828 6.992715 CGGAAAATAATTCTATGAGACCAGGT 59.007 38.462 0.00 0.00 0.00 4.00
2745 10829 7.171678 GTCGGAAAATAATTCTATGAGACCAGG 59.828 40.741 0.00 0.00 0.00 4.45
2746 10830 7.171678 GGTCGGAAAATAATTCTATGAGACCAG 59.828 40.741 0.00 0.00 41.84 4.00
2747 10831 6.990349 GGTCGGAAAATAATTCTATGAGACCA 59.010 38.462 0.00 0.00 41.84 4.02
2748 10832 7.217906 AGGTCGGAAAATAATTCTATGAGACC 58.782 38.462 0.00 0.00 42.36 3.85
2749 10833 7.385478 GGAGGTCGGAAAATAATTCTATGAGAC 59.615 40.741 0.00 0.00 0.00 3.36
2750 10834 7.070696 TGGAGGTCGGAAAATAATTCTATGAGA 59.929 37.037 0.00 0.00 0.00 3.27
2751 10835 7.217200 TGGAGGTCGGAAAATAATTCTATGAG 58.783 38.462 0.00 0.00 0.00 2.90
2752 10836 7.131907 TGGAGGTCGGAAAATAATTCTATGA 57.868 36.000 0.00 0.00 0.00 2.15
2753 10837 7.986085 ATGGAGGTCGGAAAATAATTCTATG 57.014 36.000 0.00 0.00 0.00 2.23
2754 10838 7.040409 GCAATGGAGGTCGGAAAATAATTCTAT 60.040 37.037 0.00 0.00 0.00 1.98
2755 10839 6.262273 GCAATGGAGGTCGGAAAATAATTCTA 59.738 38.462 0.00 0.00 0.00 2.10
2756 10840 5.067805 GCAATGGAGGTCGGAAAATAATTCT 59.932 40.000 0.00 0.00 0.00 2.40
2757 10841 5.281727 GCAATGGAGGTCGGAAAATAATTC 58.718 41.667 0.00 0.00 0.00 2.17
2758 10842 4.099419 GGCAATGGAGGTCGGAAAATAATT 59.901 41.667 0.00 0.00 0.00 1.40
2759 10843 3.636764 GGCAATGGAGGTCGGAAAATAAT 59.363 43.478 0.00 0.00 0.00 1.28
2760 10844 3.020984 GGCAATGGAGGTCGGAAAATAA 58.979 45.455 0.00 0.00 0.00 1.40
2761 10845 2.650322 GGCAATGGAGGTCGGAAAATA 58.350 47.619 0.00 0.00 0.00 1.40
2762 10846 1.474330 GGCAATGGAGGTCGGAAAAT 58.526 50.000 0.00 0.00 0.00 1.82
2763 10847 0.958382 CGGCAATGGAGGTCGGAAAA 60.958 55.000 0.00 0.00 0.00 2.29
2764 10848 1.376683 CGGCAATGGAGGTCGGAAA 60.377 57.895 0.00 0.00 0.00 3.13
2765 10849 2.238847 CTCGGCAATGGAGGTCGGAA 62.239 60.000 0.00 0.00 0.00 4.30
2766 10850 2.682136 TCGGCAATGGAGGTCGGA 60.682 61.111 0.00 0.00 0.00 4.55
2769 10853 2.892425 CGCTCGGCAATGGAGGTC 60.892 66.667 0.00 0.00 32.10 3.85
2779 10863 0.530870 ATAGAAAAGGCTCGCTCGGC 60.531 55.000 0.00 0.00 0.00 5.54
2835 11010 2.254546 TGCATGTAGGCCCTTTATCG 57.745 50.000 0.00 0.00 0.00 2.92
2886 11111 1.270826 GCTCAAAAGGCTCAAAGGGTC 59.729 52.381 0.00 0.00 0.00 4.46
2887 11112 1.133356 AGCTCAAAAGGCTCAAAGGGT 60.133 47.619 0.00 0.00 34.70 4.34
2888 11113 1.271656 CAGCTCAAAAGGCTCAAAGGG 59.728 52.381 0.00 0.00 38.03 3.95
2889 11114 1.271656 CCAGCTCAAAAGGCTCAAAGG 59.728 52.381 0.00 0.00 38.03 3.11
2890 11115 1.336609 GCCAGCTCAAAAGGCTCAAAG 60.337 52.381 4.80 0.00 44.92 2.77
2891 11116 0.675633 GCCAGCTCAAAAGGCTCAAA 59.324 50.000 4.80 0.00 44.92 2.69
2892 11117 2.344535 GCCAGCTCAAAAGGCTCAA 58.655 52.632 4.80 0.00 44.92 3.02
2893 11118 4.085876 GCCAGCTCAAAAGGCTCA 57.914 55.556 4.80 0.00 44.92 4.26
2937 11242 7.493320 AGCTAATTATGCATGGTGTTGAATTTG 59.507 33.333 10.16 7.55 0.00 2.32
2975 11297 9.598517 CCAGCCACACATTATTTTTATTGTAAT 57.401 29.630 0.00 0.00 0.00 1.89
2977 11299 7.179338 ACCCAGCCACACATTATTTTTATTGTA 59.821 33.333 0.00 0.00 0.00 2.41
2979 11301 6.405538 ACCCAGCCACACATTATTTTTATTG 58.594 36.000 0.00 0.00 0.00 1.90
2980 11302 6.619329 ACCCAGCCACACATTATTTTTATT 57.381 33.333 0.00 0.00 0.00 1.40
2982 11304 4.156922 CGACCCAGCCACACATTATTTTTA 59.843 41.667 0.00 0.00 0.00 1.52
2984 11306 2.491693 CGACCCAGCCACACATTATTTT 59.508 45.455 0.00 0.00 0.00 1.82
2986 11308 1.750193 CGACCCAGCCACACATTATT 58.250 50.000 0.00 0.00 0.00 1.40
2988 11310 1.376683 GCGACCCAGCCACACATTA 60.377 57.895 0.00 0.00 0.00 1.90
2989 11311 2.672996 GCGACCCAGCCACACATT 60.673 61.111 0.00 0.00 0.00 2.71
2991 11313 4.624364 CTGCGACCCAGCCACACA 62.624 66.667 0.00 0.00 34.21 3.72
2992 11314 4.626081 ACTGCGACCCAGCCACAC 62.626 66.667 0.00 0.00 45.78 3.82
3003 11325 5.306532 AGTTAAATCTTAGTCGACTGCGA 57.693 39.130 28.12 21.95 45.71 5.10
3004 11326 6.746364 ACTTAGTTAAATCTTAGTCGACTGCG 59.254 38.462 28.12 17.57 39.35 5.18
3005 11327 7.969508 AGACTTAGTTAAATCTTAGTCGACTGC 59.030 37.037 28.12 6.58 44.00 4.40
3006 11328 9.843334 AAGACTTAGTTAAATCTTAGTCGACTG 57.157 33.333 28.12 12.46 44.00 3.51
3078 11564 3.004315 ACGTGAAGATCCGTGCAATTTTT 59.996 39.130 0.00 0.00 35.69 1.94
3080 11566 2.151202 ACGTGAAGATCCGTGCAATTT 58.849 42.857 0.00 0.00 35.69 1.82
3081 11567 1.808411 ACGTGAAGATCCGTGCAATT 58.192 45.000 0.00 0.00 35.69 2.32
3093 11579 8.208560 GCTATATTCGTTTGATCTTACGTGAAG 58.791 37.037 16.10 0.00 38.79 3.02
3095 11581 7.166970 GTGCTATATTCGTTTGATCTTACGTGA 59.833 37.037 16.10 9.38 38.79 4.35
3096 11582 7.274367 GTGCTATATTCGTTTGATCTTACGTG 58.726 38.462 16.10 0.00 38.79 4.49
3097 11583 6.420008 GGTGCTATATTCGTTTGATCTTACGT 59.580 38.462 16.10 0.00 38.79 3.57
3098 11584 6.398621 CGGTGCTATATTCGTTTGATCTTACG 60.399 42.308 12.14 12.14 39.03 3.18
3099 11585 6.639686 TCGGTGCTATATTCGTTTGATCTTAC 59.360 38.462 0.00 0.00 0.00 2.34
3100 11586 6.639686 GTCGGTGCTATATTCGTTTGATCTTA 59.360 38.462 0.00 0.00 0.00 2.10
3101 11587 5.462398 GTCGGTGCTATATTCGTTTGATCTT 59.538 40.000 0.00 0.00 0.00 2.40
3103 11589 4.150098 GGTCGGTGCTATATTCGTTTGATC 59.850 45.833 0.00 0.00 0.00 2.92
3104 11590 4.056050 GGTCGGTGCTATATTCGTTTGAT 58.944 43.478 0.00 0.00 0.00 2.57
3105 11591 3.450578 GGTCGGTGCTATATTCGTTTGA 58.549 45.455 0.00 0.00 0.00 2.69
3106 11592 2.217847 CGGTCGGTGCTATATTCGTTTG 59.782 50.000 0.00 0.00 0.00 2.93
3108 11594 1.677576 TCGGTCGGTGCTATATTCGTT 59.322 47.619 0.00 0.00 0.00 3.85
3109 11595 1.266175 CTCGGTCGGTGCTATATTCGT 59.734 52.381 0.00 0.00 0.00 3.85
3111 11597 2.292569 TGTCTCGGTCGGTGCTATATTC 59.707 50.000 0.00 0.00 0.00 1.75
3113 11599 1.977056 TGTCTCGGTCGGTGCTATAT 58.023 50.000 0.00 0.00 0.00 0.86
3114 11600 1.977056 ATGTCTCGGTCGGTGCTATA 58.023 50.000 0.00 0.00 0.00 1.31
3115 11601 1.977056 TATGTCTCGGTCGGTGCTAT 58.023 50.000 0.00 0.00 0.00 2.97
3117 11603 0.172803 GTTATGTCTCGGTCGGTGCT 59.827 55.000 0.00 0.00 0.00 4.40
3118 11604 0.804933 GGTTATGTCTCGGTCGGTGC 60.805 60.000 0.00 0.00 0.00 5.01
3119 11605 0.528924 TGGTTATGTCTCGGTCGGTG 59.471 55.000 0.00 0.00 0.00 4.94
3120 11606 0.815734 CTGGTTATGTCTCGGTCGGT 59.184 55.000 0.00 0.00 0.00 4.69
3121 11607 1.100510 TCTGGTTATGTCTCGGTCGG 58.899 55.000 0.00 0.00 0.00 4.79
3122 11608 1.743958 AGTCTGGTTATGTCTCGGTCG 59.256 52.381 0.00 0.00 0.00 4.79
3123 11609 3.192844 TGAAGTCTGGTTATGTCTCGGTC 59.807 47.826 0.00 0.00 0.00 4.79
3124 11610 3.056749 GTGAAGTCTGGTTATGTCTCGGT 60.057 47.826 0.00 0.00 0.00 4.69
3125 11611 3.056821 TGTGAAGTCTGGTTATGTCTCGG 60.057 47.826 0.00 0.00 0.00 4.63
3126 11612 4.174411 TGTGAAGTCTGGTTATGTCTCG 57.826 45.455 0.00 0.00 0.00 4.04
3127 11613 6.861065 TTTTGTGAAGTCTGGTTATGTCTC 57.139 37.500 0.00 0.00 0.00 3.36
3128 11614 7.823745 AATTTTGTGAAGTCTGGTTATGTCT 57.176 32.000 0.00 0.00 0.00 3.41
3164 11652 4.035558 AGTGACATGCTTAATTACATGCGG 59.964 41.667 13.33 5.58 46.08 5.69
3187 11682 2.263540 GGCCGGTCGCTACAAGAA 59.736 61.111 1.90 0.00 37.74 2.52
3188 11683 4.124351 CGGCCGGTCGCTACAAGA 62.124 66.667 18.84 0.00 37.74 3.02
3190 11685 4.124351 CTCGGCCGGTCGCTACAA 62.124 66.667 26.77 4.79 37.74 2.41
3200 11695 2.031163 GATCATTCCCCTCGGCCG 59.969 66.667 22.12 22.12 0.00 6.13
3204 11699 6.151144 ACTTTTAACTTTGATCATTCCCCTCG 59.849 38.462 0.00 0.00 0.00 4.63
3205 11700 7.468141 ACTTTTAACTTTGATCATTCCCCTC 57.532 36.000 0.00 0.00 0.00 4.30
3206 11701 8.950007 TTACTTTTAACTTTGATCATTCCCCT 57.050 30.769 0.00 0.00 0.00 4.79
3207 11702 9.639601 CTTTACTTTTAACTTTGATCATTCCCC 57.360 33.333 0.00 0.00 0.00 4.81
3212 11707 9.981114 CCCAACTTTACTTTTAACTTTGATCAT 57.019 29.630 0.00 0.00 0.00 2.45
3215 11710 7.787028 TGCCCAACTTTACTTTTAACTTTGAT 58.213 30.769 0.00 0.00 0.00 2.57
3217 11712 7.835634 TTGCCCAACTTTACTTTTAACTTTG 57.164 32.000 0.00 0.00 0.00 2.77
3226 11721 6.926630 TGGATTATTTGCCCAACTTTACTT 57.073 33.333 0.00 0.00 0.00 2.24
3227 11722 7.494922 AATGGATTATTTGCCCAACTTTACT 57.505 32.000 0.00 0.00 33.15 2.24
3228 11723 8.560355 AAAATGGATTATTTGCCCAACTTTAC 57.440 30.769 0.00 0.00 38.93 2.01
3229 11724 8.601546 AGAAAATGGATTATTTGCCCAACTTTA 58.398 29.630 0.00 0.00 38.93 1.85
3230 11725 7.460910 AGAAAATGGATTATTTGCCCAACTTT 58.539 30.769 0.00 0.00 38.93 2.66
3233 11728 5.519927 CGAGAAAATGGATTATTTGCCCAAC 59.480 40.000 0.00 0.00 38.93 3.77
3234 11729 5.420421 TCGAGAAAATGGATTATTTGCCCAA 59.580 36.000 0.00 0.00 38.93 4.12
3236 11731 5.281727 GTCGAGAAAATGGATTATTTGCCC 58.718 41.667 0.00 0.00 38.93 5.36
3237 11732 5.281727 GGTCGAGAAAATGGATTATTTGCC 58.718 41.667 0.00 0.00 38.93 4.52
3238 11733 4.970003 CGGTCGAGAAAATGGATTATTTGC 59.030 41.667 0.00 0.00 38.93 3.68
3239 11734 6.358118 TCGGTCGAGAAAATGGATTATTTG 57.642 37.500 0.00 0.00 38.93 2.32
3240 11735 7.190920 GATCGGTCGAGAAAATGGATTATTT 57.809 36.000 0.00 0.00 40.67 1.40
3241 11736 6.787085 GATCGGTCGAGAAAATGGATTATT 57.213 37.500 0.00 0.00 0.00 1.40
3298 11867 2.995939 CGTGAACCTGCGCATATCATAT 59.004 45.455 12.24 0.00 0.00 1.78
3328 11901 3.054503 CGACGACGACTGGTCCCT 61.055 66.667 0.00 0.00 42.99 4.20
3437 12016 0.320421 GACCAGCTTGTTGGACGCTA 60.320 55.000 10.41 0.00 40.87 4.26
3519 12098 1.382692 GCATCTGCTCCTTGGCCTTC 61.383 60.000 3.32 0.00 38.21 3.46
3612 12218 1.744368 CTCCTGCTTGCACGATGCT 60.744 57.895 10.54 0.00 45.31 3.79
3670 12276 1.383523 TGGCACACGTTGTTGATCAA 58.616 45.000 3.38 3.38 0.00 2.57
3775 12387 1.674651 AGTCGCTGCTGTACTCGGA 60.675 57.895 0.00 0.00 0.00 4.55
3849 12461 1.658673 GTTGGTCGTCTCGTCCAGT 59.341 57.895 7.92 0.00 44.41 4.00
3854 12466 0.386858 CATGTCGTTGGTCGTCTCGT 60.387 55.000 0.00 0.00 40.80 4.18
3920 12532 0.748005 GGGAATGTGTAGCGTGCCAT 60.748 55.000 0.00 0.00 33.10 4.40
3956 12568 3.553437 CTCCACAAGTCGCCGTCGT 62.553 63.158 0.00 0.00 36.96 4.34
4004 12617 1.837439 ACCAGGCCATCGTCAATTCTA 59.163 47.619 5.01 0.00 0.00 2.10
4008 12621 2.799126 TAAACCAGGCCATCGTCAAT 57.201 45.000 5.01 0.00 0.00 2.57
4033 12646 0.176680 GGACAGTGTCAGCATCCGAT 59.823 55.000 24.20 0.00 33.68 4.18
4144 13124 7.038658 GGATATATAGGGCCTCCATCATCTTAC 60.039 44.444 10.74 0.00 34.83 2.34
4232 13214 3.214985 TGGGGAAGGGGGTATATAAAGGA 59.785 47.826 0.00 0.00 0.00 3.36
4248 13232 0.563173 TTCATGGTTGGGTTGGGGAA 59.437 50.000 0.00 0.00 0.00 3.97
4272 13510 2.975799 GCGGTGCGAAAGTTCCCA 60.976 61.111 0.00 0.00 0.00 4.37
4292 13530 2.143122 GGTGCGACAAAGTTGATGAGA 58.857 47.619 0.00 0.00 0.00 3.27
4307 13545 1.226101 GCACATTGTCATCGGTGCG 60.226 57.895 0.00 0.00 45.84 5.34
4319 13557 3.499737 GCGCGCTACCTGCACATT 61.500 61.111 26.67 0.00 43.06 2.71
4326 13564 4.452733 GTCCAAGGCGCGCTACCT 62.453 66.667 32.29 17.33 40.02 3.08
4366 13606 1.213926 GAACTGGGGAGAGATGCCAAT 59.786 52.381 0.00 0.00 0.00 3.16
4367 13607 0.620556 GAACTGGGGAGAGATGCCAA 59.379 55.000 0.00 0.00 0.00 4.52
4382 13625 9.689976 CTCATGAGATATTTGTATCGAAGAACT 57.310 33.333 18.34 0.00 43.58 3.01
4427 13670 8.805175 ACACCAAAAATTACATCTGATTGATCA 58.195 29.630 0.00 0.00 32.05 2.92
4498 13741 7.012943 GCAACAAAGAACCAAAACAAACTAAC 58.987 34.615 0.00 0.00 0.00 2.34
4608 14151 5.245075 TGGAAGATTAAACCCAACCAACATC 59.755 40.000 0.00 0.00 0.00 3.06
4626 14169 5.127845 CCACTCAGCTAGATTACTTGGAAGA 59.872 44.000 0.00 0.00 0.00 2.87
4642 14185 0.250467 TGGTCTTTCTGCCACTCAGC 60.250 55.000 0.00 0.00 42.56 4.26
4721 14264 3.581332 TCTTTACCTTCGGTCCATCAACT 59.419 43.478 0.00 0.00 37.09 3.16
4748 14291 6.255887 GCAAGGTGACATAGTGTTGATAGTAC 59.744 42.308 0.00 0.00 0.00 2.73
4760 14303 3.687572 GCATCAAGCAAGGTGACATAG 57.312 47.619 0.00 0.00 44.79 2.23
4829 14472 6.882610 ATCACTAATTGTGCACTTCAAGAA 57.117 33.333 19.41 2.63 45.81 2.52
4849 14492 7.559486 AGACTGTTATTCAACTGCATCTATCA 58.441 34.615 0.00 0.00 37.16 2.15
4885 15665 7.722728 ACATGTCAGCATATAAACATTCCATCT 59.277 33.333 0.00 0.00 33.30 2.90
4888 15668 8.785946 CATACATGTCAGCATATAAACATTCCA 58.214 33.333 0.00 0.00 33.30 3.53
4947 15727 3.307782 ACGGTATTACAGTTGCGTATTGC 59.692 43.478 0.00 0.00 46.70 3.56
4949 15729 3.866910 CCACGGTATTACAGTTGCGTATT 59.133 43.478 0.00 0.00 0.00 1.89
5002 15788 0.519077 CTTCACCTCGGCAAAAGCTC 59.481 55.000 0.00 0.00 0.00 4.09
5014 15800 1.135083 CGGCGATGAGTAACTTCACCT 60.135 52.381 0.00 0.00 0.00 4.00
5025 15811 1.493950 GCAATCCACTCGGCGATGAG 61.494 60.000 11.27 0.53 41.86 2.90
5028 15814 1.815421 GTGCAATCCACTCGGCGAT 60.815 57.895 11.27 0.00 41.35 4.58
5032 15818 2.460330 GAGTGTGCAATCCACTCGG 58.540 57.895 17.19 0.00 46.52 4.63
5040 15826 7.578310 AAAGCATATAAGATGAGTGTGCAAT 57.422 32.000 0.00 0.00 33.80 3.56
5059 15845 7.185453 GCAAATTAACACAACATCAAAAAGCA 58.815 30.769 0.00 0.00 0.00 3.91
5068 15854 3.319405 TGACCGGCAAATTAACACAACAT 59.681 39.130 0.00 0.00 0.00 2.71
5072 15858 2.852449 TCTGACCGGCAAATTAACACA 58.148 42.857 0.00 0.00 0.00 3.72
5088 15874 1.561643 AGAACTCTCCGGCATTCTGA 58.438 50.000 0.00 0.00 30.26 3.27
5097 15883 1.131504 CCGAGAAGACAGAACTCTCCG 59.868 57.143 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.