Multiple sequence alignment - TraesCS4A01G420900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G420900 chr4A 100.000 4147 0 0 1 4147 691149636 691153782 0.000000e+00 7659.0
1 TraesCS4A01G420900 chr4A 87.609 1259 123 14 2894 4147 690885054 690883824 0.000000e+00 1430.0
2 TraesCS4A01G420900 chr4A 89.338 816 73 11 3013 3815 690879955 690879141 0.000000e+00 1013.0
3 TraesCS4A01G420900 chr4A 85.696 790 97 10 2836 3613 691168555 691169340 0.000000e+00 819.0
4 TraesCS4A01G420900 chr4A 83.667 900 63 45 988 1826 690938259 690937383 0.000000e+00 771.0
5 TraesCS4A01G420900 chr4A 87.234 705 44 20 988 1649 690689434 690688733 0.000000e+00 761.0
6 TraesCS4A01G420900 chr4A 86.217 711 85 8 2710 3416 690687809 690687108 0.000000e+00 758.0
7 TraesCS4A01G420900 chr4A 86.919 688 60 21 3467 4147 690674473 690673809 0.000000e+00 745.0
8 TraesCS4A01G420900 chr4A 91.620 537 34 7 1000 1527 691470116 691469582 0.000000e+00 732.0
9 TraesCS4A01G420900 chr4A 89.964 548 45 7 988 1526 691166487 691167033 0.000000e+00 699.0
10 TraesCS4A01G420900 chr4A 89.062 576 38 6 1257 1826 690881271 690880715 0.000000e+00 691.0
11 TraesCS4A01G420900 chr4A 81.004 837 127 15 2836 3665 691325159 691325970 1.800000e-178 636.0
12 TraesCS4A01G420900 chr4A 88.139 548 37 18 267 791 690882521 690881979 1.080000e-175 627.0
13 TraesCS4A01G420900 chr4A 88.423 501 37 9 2097 2593 690688591 690688108 6.620000e-163 584.0
14 TraesCS4A01G420900 chr4A 85.822 529 57 15 264 787 690939146 690938631 3.120000e-151 545.0
15 TraesCS4A01G420900 chr4A 84.505 555 37 25 264 791 690690364 690689832 1.910000e-138 503.0
16 TraesCS4A01G420900 chr4A 84.029 407 37 11 791 1174 690881786 690881385 2.610000e-97 366.0
17 TraesCS4A01G420900 chr4A 100.000 182 0 0 4411 4592 691154046 691154227 2.050000e-88 337.0
18 TraesCS4A01G420900 chr4A 97.368 190 5 0 988 1177 690886984 690886795 1.590000e-84 324.0
19 TraesCS4A01G420900 chr4A 90.206 194 15 4 3644 3834 691829800 691829608 2.740000e-62 250.0
20 TraesCS4A01G420900 chr4A 85.308 211 21 7 777 980 690938581 690938374 4.660000e-50 209.0
21 TraesCS4A01G420900 chr4A 84.615 195 24 5 541 732 690887871 690887680 6.060000e-44 189.0
22 TraesCS4A01G420900 chr4A 84.615 182 26 2 803 982 690689736 690689555 3.650000e-41 180.0
23 TraesCS4A01G420900 chr4A 90.769 130 12 0 4018 4147 691169387 691169516 1.700000e-39 174.0
24 TraesCS4A01G420900 chr4A 84.868 152 18 5 821 969 691166216 691166365 1.030000e-31 148.0
25 TraesCS4A01G420900 chr4A 94.937 79 3 1 1748 1826 690688716 690688639 6.240000e-24 122.0
26 TraesCS4A01G420900 chr4A 97.222 72 1 1 2640 2711 690687934 690687864 2.240000e-23 121.0
27 TraesCS4A01G420900 chr4A 92.593 81 6 0 2523 2603 690885863 690885783 2.900000e-22 117.0
28 TraesCS4A01G420900 chr4A 87.097 93 9 1 2875 2964 690880057 690879965 8.130000e-18 102.0
29 TraesCS4A01G420900 chr4A 90.278 72 7 0 4076 4147 691829425 691829354 1.360000e-15 95.3
30 TraesCS4A01G420900 chr7D 85.924 1705 153 34 2500 4147 34074960 34073286 0.000000e+00 1738.0
31 TraesCS4A01G420900 chr7D 89.249 865 60 18 988 1826 34077185 34076328 0.000000e+00 1051.0
32 TraesCS4A01G420900 chr7D 85.452 873 63 40 998 1826 33754619 33755471 0.000000e+00 850.0
33 TraesCS4A01G420900 chr7D 85.181 884 63 27 988 1826 34444954 34445814 0.000000e+00 845.0
34 TraesCS4A01G420900 chr7D 85.641 780 105 4 2837 3613 34446668 34447443 0.000000e+00 813.0
35 TraesCS4A01G420900 chr7D 81.589 793 121 12 2836 3612 34010932 34010149 2.330000e-177 632.0
36 TraesCS4A01G420900 chr7D 87.124 466 50 4 2837 3296 34149977 34149516 1.890000e-143 520.0
37 TraesCS4A01G420900 chr7D 84.486 477 41 18 258 705 34444047 34444519 1.520000e-119 440.0
38 TraesCS4A01G420900 chr7D 92.593 270 13 4 264 533 34168904 34168642 9.320000e-102 381.0
39 TraesCS4A01G420900 chr7D 80.068 587 48 30 264 791 34152735 34152159 5.610000e-99 372.0
40 TraesCS4A01G420900 chr7D 96.809 188 6 0 988 1175 34151716 34151529 9.590000e-82 315.0
41 TraesCS4A01G420900 chr7D 91.707 205 3 2 791 982 34077494 34077291 5.850000e-69 272.0
42 TraesCS4A01G420900 chr7D 84.116 277 16 15 538 791 34078011 34077740 4.590000e-60 243.0
43 TraesCS4A01G420900 chr7D 82.264 265 29 8 538 787 34168598 34168337 3.600000e-51 213.0
44 TraesCS4A01G420900 chr7D 89.714 175 4 2 791 952 34152015 34151842 1.290000e-50 211.0
45 TraesCS4A01G420900 chr7D 87.895 190 8 4 791 967 34444662 34444849 4.660000e-50 209.0
46 TraesCS4A01G420900 chr7D 82.041 245 28 9 264 506 33753388 33753618 1.300000e-45 195.0
47 TraesCS4A01G420900 chr7D 85.217 115 13 1 2523 2633 34446311 34446425 1.040000e-21 115.0
48 TraesCS4A01G420900 chr7D 92.982 57 4 0 2002 2058 34076329 34076273 2.940000e-12 84.2
49 TraesCS4A01G420900 chr7A 88.013 951 106 6 2837 3782 34518220 34517273 0.000000e+00 1118.0
50 TraesCS4A01G420900 chr7A 83.867 874 78 33 1000 1826 34106557 34105700 0.000000e+00 774.0
51 TraesCS4A01G420900 chr7A 91.146 576 32 6 1257 1826 34519325 34518763 0.000000e+00 763.0
52 TraesCS4A01G420900 chr7A 93.074 231 16 0 264 494 34520618 34520388 5.690000e-89 339.0
53 TraesCS4A01G420900 chr7A 96.237 186 6 1 990 1174 34519654 34519469 2.080000e-78 303.0
54 TraesCS4A01G420900 chr7A 86.973 261 17 10 538 782 34520381 34520122 1.260000e-70 278.0
55 TraesCS4A01G420900 chr7A 91.860 172 9 3 2493 2664 34518518 34518352 7.680000e-58 235.0
56 TraesCS4A01G420900 chr7A 83.146 267 29 10 269 533 34119441 34119189 3.570000e-56 230.0
57 TraesCS4A01G420900 chr7A 81.429 210 17 8 791 982 34519947 34519742 7.960000e-33 152.0
58 TraesCS4A01G420900 chr7A 86.538 52 7 0 2257 2308 649820360 649820309 1.780000e-04 58.4
59 TraesCS4A01G420900 chr6B 99.242 264 2 0 1 264 663020635 663020372 1.160000e-130 477.0
60 TraesCS4A01G420900 chr6A 99.242 264 2 0 1 264 2174820 2175083 1.160000e-130 477.0
61 TraesCS4A01G420900 chr2B 99.245 265 1 1 1 264 218294799 218294535 1.160000e-130 477.0
62 TraesCS4A01G420900 chr2B 98.881 268 2 1 1 268 704875076 704875342 1.160000e-130 477.0
63 TraesCS4A01G420900 chr2B 98.507 268 4 0 1 268 121377844 121377577 1.500000e-129 473.0
64 TraesCS4A01G420900 chr2B 98.864 264 3 0 1 264 483448807 483449070 5.380000e-129 472.0
65 TraesCS4A01G420900 chrUn 99.240 263 2 0 1 263 348465240 348465502 4.160000e-130 475.0
66 TraesCS4A01G420900 chr7B 98.864 264 3 0 1 264 560540260 560540523 5.380000e-129 472.0
67 TraesCS4A01G420900 chr7B 88.679 53 4 2 2257 2308 614399893 614399842 3.840000e-06 63.9
68 TraesCS4A01G420900 chr1A 98.864 264 3 0 1 264 564527921 564527658 5.380000e-129 472.0
69 TraesCS4A01G420900 chr4D 88.660 97 11 0 2735 2831 281303965 281303869 8.070000e-23 119.0
70 TraesCS4A01G420900 chr3B 87.500 80 10 0 2735 2814 18787119 18787040 4.890000e-15 93.5
71 TraesCS4A01G420900 chr2D 82.222 90 12 4 2743 2831 556369050 556368964 1.770000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G420900 chr4A 691149636 691154227 4591 False 3998.000000 7659 100.000000 1 4592 2 chr4A.!!$F2 4591
1 TraesCS4A01G420900 chr4A 690673809 690674473 664 True 745.000000 745 86.919000 3467 4147 1 chr4A.!!$R1 680
2 TraesCS4A01G420900 chr4A 691469582 691470116 534 True 732.000000 732 91.620000 1000 1527 1 chr4A.!!$R2 527
3 TraesCS4A01G420900 chr4A 691325159 691325970 811 False 636.000000 636 81.004000 2836 3665 1 chr4A.!!$F1 829
4 TraesCS4A01G420900 chr4A 690879141 690887871 8730 True 539.888889 1430 88.872222 267 4147 9 chr4A.!!$R4 3880
5 TraesCS4A01G420900 chr4A 690937383 690939146 1763 True 508.333333 771 84.932333 264 1826 3 chr4A.!!$R5 1562
6 TraesCS4A01G420900 chr4A 691166216 691169516 3300 False 460.000000 819 87.824250 821 4147 4 chr4A.!!$F3 3326
7 TraesCS4A01G420900 chr4A 690687108 690690364 3256 True 432.714286 761 89.021857 264 3416 7 chr4A.!!$R3 3152
8 TraesCS4A01G420900 chr7D 34073286 34078011 4725 True 677.640000 1738 88.795600 538 4147 5 chr7D.!!$R2 3609
9 TraesCS4A01G420900 chr7D 34010149 34010932 783 True 632.000000 632 81.589000 2836 3612 1 chr7D.!!$R1 776
10 TraesCS4A01G420900 chr7D 33753388 33755471 2083 False 522.500000 850 83.746500 264 1826 2 chr7D.!!$F1 1562
11 TraesCS4A01G420900 chr7D 34444047 34447443 3396 False 484.400000 845 85.684000 258 3613 5 chr7D.!!$F2 3355
12 TraesCS4A01G420900 chr7D 34149516 34152735 3219 True 354.500000 520 88.428750 264 3296 4 chr7D.!!$R3 3032
13 TraesCS4A01G420900 chr7D 34168337 34168904 567 True 297.000000 381 87.428500 264 787 2 chr7D.!!$R4 523
14 TraesCS4A01G420900 chr7A 34105700 34106557 857 True 774.000000 774 83.867000 1000 1826 1 chr7A.!!$R1 826
15 TraesCS4A01G420900 chr7A 34517273 34520618 3345 True 455.428571 1118 89.818857 264 3782 7 chr7A.!!$R4 3518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 5585 0.112412 TGGGCTTTCTTCCCTCCAAC 59.888 55.0 0.00 0.00 44.23 3.77 F
618 5798 0.318784 GAGAGAAACGACTGGCACGT 60.319 55.0 0.00 0.00 45.89 4.49 F
1864 8075 0.323451 AAAAACCCCCGGATCTCTGC 60.323 55.0 0.73 0.00 0.00 4.26 F
2070 8296 0.037590 TTCCTTTCGGTGGGTCATGG 59.962 55.0 0.00 0.00 0.00 3.66 F
2883 10755 0.034337 AACAGATACACGGCGTGGTT 59.966 50.0 39.03 29.15 37.94 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 8013 0.041090 GTGTCCCCATTCCCAACCAT 59.959 55.0 0.00 0.00 0.00 3.55 R
1994 8205 0.181114 TGCACCATGGCATCCTAGTC 59.819 55.0 13.04 0.00 39.25 2.59 R
2805 10669 0.037419 TGCGGGGTAACGGTAGTTTC 60.037 55.0 0.00 0.00 41.49 2.78 R
3198 11109 0.243095 GGTGGTCCAGTACTGACGAC 59.757 60.0 24.68 22.49 0.00 4.34 R
4497 12428 0.030195 TGGATCCATAGTCCAGGGCA 60.030 55.0 11.44 0.00 40.72 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.312669 AGGTAGTCTTATCTTAAGTCTTGCAT 57.687 34.615 1.63 0.00 0.00 3.96
81 82 6.380079 AAAAGAGTCTACAATGGGTCATCT 57.620 37.500 0.00 0.00 0.00 2.90
82 83 5.606348 AAGAGTCTACAATGGGTCATCTC 57.394 43.478 0.00 0.00 0.00 2.75
83 84 4.877773 AGAGTCTACAATGGGTCATCTCT 58.122 43.478 0.00 0.00 0.00 3.10
84 85 5.276440 AGAGTCTACAATGGGTCATCTCTT 58.724 41.667 0.00 0.00 30.83 2.85
85 86 6.436027 AGAGTCTACAATGGGTCATCTCTTA 58.564 40.000 0.00 0.00 30.83 2.10
86 87 6.549364 AGAGTCTACAATGGGTCATCTCTTAG 59.451 42.308 0.00 0.00 30.83 2.18
87 88 5.069781 AGTCTACAATGGGTCATCTCTTAGC 59.930 44.000 0.00 0.00 0.00 3.09
88 89 5.069781 GTCTACAATGGGTCATCTCTTAGCT 59.930 44.000 0.00 0.00 0.00 3.32
91 92 6.313519 ACAATGGGTCATCTCTTAGCTTTA 57.686 37.500 0.00 0.00 0.00 1.85
93 94 6.995091 ACAATGGGTCATCTCTTAGCTTTATC 59.005 38.462 0.00 0.00 0.00 1.75
94 95 7.147408 ACAATGGGTCATCTCTTAGCTTTATCT 60.147 37.037 0.00 0.00 0.00 1.98
96 97 6.821388 TGGGTCATCTCTTAGCTTTATCTTC 58.179 40.000 0.00 0.00 0.00 2.87
97 98 6.384015 TGGGTCATCTCTTAGCTTTATCTTCA 59.616 38.462 0.00 0.00 0.00 3.02
98 99 7.092891 TGGGTCATCTCTTAGCTTTATCTTCAA 60.093 37.037 0.00 0.00 0.00 2.69
100 101 9.988815 GGTCATCTCTTAGCTTTATCTTCAATA 57.011 33.333 0.00 0.00 0.00 1.90
125 126 7.687941 ACTAGTCATTCCTAAAAATGTGGTG 57.312 36.000 0.00 0.00 37.77 4.17
126 127 7.458397 ACTAGTCATTCCTAAAAATGTGGTGA 58.542 34.615 0.00 0.00 37.77 4.02
131 132 6.947733 TCATTCCTAAAAATGTGGTGAGACAT 59.052 34.615 0.00 0.00 38.23 3.06
132 133 8.106462 TCATTCCTAAAAATGTGGTGAGACATA 58.894 33.333 0.00 0.00 35.43 2.29
133 134 8.906867 CATTCCTAAAAATGTGGTGAGACATAT 58.093 33.333 0.00 0.00 35.43 1.78
135 136 8.279970 TCCTAAAAATGTGGTGAGACATATTG 57.720 34.615 0.00 0.00 35.43 1.90
136 137 7.888021 TCCTAAAAATGTGGTGAGACATATTGT 59.112 33.333 0.00 0.00 35.43 2.71
137 138 7.970061 CCTAAAAATGTGGTGAGACATATTGTG 59.030 37.037 0.00 0.00 35.43 3.33
139 140 3.701205 TGTGGTGAGACATATTGTGCT 57.299 42.857 0.00 0.00 0.00 4.40
140 141 4.817318 TGTGGTGAGACATATTGTGCTA 57.183 40.909 0.00 0.00 0.00 3.49
141 142 5.159273 TGTGGTGAGACATATTGTGCTAA 57.841 39.130 0.00 0.00 0.00 3.09
144 145 5.521735 GTGGTGAGACATATTGTGCTAAGAG 59.478 44.000 0.00 0.00 0.00 2.85
145 146 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
146 147 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
147 148 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
148 149 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
149 150 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
150 151 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
151 152 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
152 153 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
187 188 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
190 191 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
191 192 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
193 194 7.446001 AAGAGAAGACAAGCCTTTTCTTATG 57.554 36.000 5.29 0.00 42.29 1.90
194 195 6.773638 AGAGAAGACAAGCCTTTTCTTATGA 58.226 36.000 5.29 0.00 35.01 2.15
198 199 6.809630 AGACAAGCCTTTTCTTATGAGTTC 57.190 37.500 0.00 0.00 0.00 3.01
199 200 6.538263 AGACAAGCCTTTTCTTATGAGTTCT 58.462 36.000 0.00 0.00 0.00 3.01
201 202 6.538263 ACAAGCCTTTTCTTATGAGTTCTCT 58.462 36.000 1.53 0.00 0.00 3.10
202 203 6.652900 ACAAGCCTTTTCTTATGAGTTCTCTC 59.347 38.462 1.53 0.00 40.79 3.20
203 204 6.619329 AGCCTTTTCTTATGAGTTCTCTCT 57.381 37.500 1.53 0.00 40.98 3.10
204 205 6.639563 AGCCTTTTCTTATGAGTTCTCTCTC 58.360 40.000 1.53 0.00 40.98 3.20
205 206 5.815222 GCCTTTTCTTATGAGTTCTCTCTCC 59.185 44.000 1.53 0.00 40.98 3.71
207 208 7.264947 CCTTTTCTTATGAGTTCTCTCTCCTC 58.735 42.308 1.53 0.00 40.98 3.71
208 209 6.783708 TTTCTTATGAGTTCTCTCTCCTCC 57.216 41.667 1.53 0.00 40.98 4.30
209 210 5.458451 TCTTATGAGTTCTCTCTCCTCCA 57.542 43.478 1.53 0.00 40.98 3.86
210 211 5.197451 TCTTATGAGTTCTCTCTCCTCCAC 58.803 45.833 1.53 0.00 40.98 4.02
211 212 2.980246 TGAGTTCTCTCTCCTCCACA 57.020 50.000 1.53 0.00 40.98 4.17
212 213 3.464720 TGAGTTCTCTCTCCTCCACAT 57.535 47.619 1.53 0.00 40.98 3.21
214 215 3.245407 TGAGTTCTCTCTCCTCCACATCA 60.245 47.826 1.53 0.00 40.98 3.07
215 216 3.960102 GAGTTCTCTCTCCTCCACATCAT 59.040 47.826 0.00 0.00 37.68 2.45
216 217 3.960102 AGTTCTCTCTCCTCCACATCATC 59.040 47.826 0.00 0.00 0.00 2.92
217 218 3.677156 TCTCTCTCCTCCACATCATCA 57.323 47.619 0.00 0.00 0.00 3.07
218 219 4.196118 TCTCTCTCCTCCACATCATCAT 57.804 45.455 0.00 0.00 0.00 2.45
219 220 4.554683 TCTCTCTCCTCCACATCATCATT 58.445 43.478 0.00 0.00 0.00 2.57
221 222 6.138967 TCTCTCTCCTCCACATCATCATTTA 58.861 40.000 0.00 0.00 0.00 1.40
222 223 6.786461 TCTCTCTCCTCCACATCATCATTTAT 59.214 38.462 0.00 0.00 0.00 1.40
223 224 7.002250 TCTCTCCTCCACATCATCATTTATC 57.998 40.000 0.00 0.00 0.00 1.75
224 225 6.013898 TCTCTCCTCCACATCATCATTTATCC 60.014 42.308 0.00 0.00 0.00 2.59
226 227 7.018769 TCTCCTCCACATCATCATTTATCCTA 58.981 38.462 0.00 0.00 0.00 2.94
227 228 7.009179 TCCTCCACATCATCATTTATCCTAC 57.991 40.000 0.00 0.00 0.00 3.18
228 229 5.871524 CCTCCACATCATCATTTATCCTACG 59.128 44.000 0.00 0.00 0.00 3.51
229 230 6.419484 TCCACATCATCATTTATCCTACGT 57.581 37.500 0.00 0.00 0.00 3.57
230 231 6.223120 TCCACATCATCATTTATCCTACGTG 58.777 40.000 0.00 0.00 0.00 4.49
231 232 5.409520 CCACATCATCATTTATCCTACGTGG 59.590 44.000 0.00 0.00 33.73 4.94
232 233 4.997395 ACATCATCATTTATCCTACGTGGC 59.003 41.667 0.00 0.00 35.26 5.01
233 234 4.681074 TCATCATTTATCCTACGTGGCA 57.319 40.909 0.00 0.00 35.26 4.92
234 235 4.377021 TCATCATTTATCCTACGTGGCAC 58.623 43.478 7.79 7.79 35.26 5.01
236 237 4.054780 TCATTTATCCTACGTGGCACTC 57.945 45.455 16.72 0.00 35.26 3.51
237 238 3.704566 TCATTTATCCTACGTGGCACTCT 59.295 43.478 16.72 2.90 35.26 3.24
239 240 5.361571 TCATTTATCCTACGTGGCACTCTTA 59.638 40.000 16.72 3.36 35.26 2.10
240 241 5.664294 TTTATCCTACGTGGCACTCTTAA 57.336 39.130 16.72 2.68 35.26 1.85
241 242 3.802948 ATCCTACGTGGCACTCTTAAG 57.197 47.619 16.72 0.00 35.26 1.85
242 243 2.799017 TCCTACGTGGCACTCTTAAGA 58.201 47.619 16.72 4.81 35.26 2.10
243 244 3.362706 TCCTACGTGGCACTCTTAAGAT 58.637 45.455 16.72 0.00 35.26 2.40
244 245 4.529897 TCCTACGTGGCACTCTTAAGATA 58.470 43.478 16.72 0.00 35.26 1.98
246 247 3.166489 ACGTGGCACTCTTAAGATAGC 57.834 47.619 16.72 16.75 0.00 2.97
247 248 2.496070 ACGTGGCACTCTTAAGATAGCA 59.504 45.455 22.91 11.71 0.00 3.49
248 249 2.860735 CGTGGCACTCTTAAGATAGCAC 59.139 50.000 22.91 18.30 0.00 4.40
249 250 3.198872 GTGGCACTCTTAAGATAGCACC 58.801 50.000 22.91 13.98 0.00 5.01
250 251 2.837591 TGGCACTCTTAAGATAGCACCA 59.162 45.455 22.91 15.80 0.00 4.17
251 252 3.455910 TGGCACTCTTAAGATAGCACCAT 59.544 43.478 22.91 0.00 0.00 3.55
252 253 4.080356 TGGCACTCTTAAGATAGCACCATT 60.080 41.667 22.91 0.00 0.00 3.16
253 254 4.274459 GGCACTCTTAAGATAGCACCATTG 59.726 45.833 22.91 5.79 0.00 2.82
254 255 4.878397 GCACTCTTAAGATAGCACCATTGT 59.122 41.667 18.96 3.41 0.00 2.71
255 256 6.049149 GCACTCTTAAGATAGCACCATTGTA 58.951 40.000 18.96 0.00 0.00 2.41
256 257 6.018669 GCACTCTTAAGATAGCACCATTGTAC 60.019 42.308 18.96 0.00 0.00 2.90
257 258 7.041721 CACTCTTAAGATAGCACCATTGTACA 58.958 38.462 5.44 0.00 0.00 2.90
258 259 7.712639 CACTCTTAAGATAGCACCATTGTACAT 59.287 37.037 5.44 0.00 0.00 2.29
259 260 7.712639 ACTCTTAAGATAGCACCATTGTACATG 59.287 37.037 5.44 0.00 0.00 3.21
260 261 6.483307 TCTTAAGATAGCACCATTGTACATGC 59.517 38.462 10.53 10.53 38.39 4.06
261 262 3.480470 AGATAGCACCATTGTACATGCC 58.520 45.455 14.08 1.71 38.92 4.40
262 263 2.051334 TAGCACCATTGTACATGCCC 57.949 50.000 14.08 0.00 38.92 5.36
263 264 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.00 38.92 5.19
264 265 0.740737 GCACCATTGTACATGCCCTC 59.259 55.000 7.77 0.00 31.71 4.30
265 266 1.954733 GCACCATTGTACATGCCCTCA 60.955 52.381 7.77 0.00 31.71 3.86
266 267 2.445427 CACCATTGTACATGCCCTCAA 58.555 47.619 0.00 0.00 0.00 3.02
267 268 3.025978 CACCATTGTACATGCCCTCAAT 58.974 45.455 0.00 0.00 0.00 2.57
269 270 4.644234 CACCATTGTACATGCCCTCAATAA 59.356 41.667 0.00 0.00 0.00 1.40
270 271 5.302568 CACCATTGTACATGCCCTCAATAAT 59.697 40.000 0.00 0.00 0.00 1.28
282 5367 4.872124 GCCCTCAATAATTTTCAAAGGCAG 59.128 41.667 0.00 0.00 36.67 4.85
389 5487 2.103042 CCTACAACCGAGCTGCAGC 61.103 63.158 31.53 31.53 42.49 5.25
406 5504 2.742774 CAGCATCAACATCCATGCATG 58.257 47.619 20.19 20.19 46.70 4.06
486 5585 0.112412 TGGGCTTTCTTCCCTCCAAC 59.888 55.000 0.00 0.00 44.23 3.77
587 5767 8.619146 AATTTATTACAACATCACGCATGAAG 57.381 30.769 0.00 0.00 38.69 3.02
591 5771 2.421073 ACAACATCACGCATGAAGATGG 59.579 45.455 19.76 10.21 42.55 3.51
609 5789 6.102897 AGATGGAAGAAAAGAGAGAAACGA 57.897 37.500 0.00 0.00 0.00 3.85
618 5798 0.318784 GAGAGAAACGACTGGCACGT 60.319 55.000 0.00 0.00 45.89 4.49
620 5800 1.338973 AGAGAAACGACTGGCACGTAA 59.661 47.619 3.47 0.00 43.16 3.18
631 5811 5.163893 CGACTGGCACGTAAACATCTTTTAT 60.164 40.000 0.00 0.00 0.00 1.40
646 5852 9.762933 AACATCTTTTATTTTCTGCTGCTTAAA 57.237 25.926 0.00 0.00 0.00 1.52
654 5860 5.391312 TTTCTGCTGCTTAAATTTCCTCC 57.609 39.130 0.00 0.00 0.00 4.30
773 6022 1.202830 TCTGTTGCCGTGGTGGTTATT 60.203 47.619 0.00 0.00 41.21 1.40
787 6051 2.102578 GGTTATTCTGGCCATGCTTGT 58.897 47.619 5.51 0.00 0.00 3.16
788 6052 2.159198 GGTTATTCTGGCCATGCTTGTG 60.159 50.000 5.51 0.00 0.00 3.33
806 6414 2.182030 GTTGGCGTCTCCCTCTCG 59.818 66.667 0.00 0.00 0.00 4.04
884 6590 5.661759 GCAGTAGCTATATATAACCACCCCT 59.338 44.000 0.00 0.00 37.91 4.79
941 6648 1.546029 GCAACAACTTCATTCCCCTCC 59.454 52.381 0.00 0.00 0.00 4.30
982 6723 4.101077 CCCTCCTGCTCCCTCCCT 62.101 72.222 0.00 0.00 0.00 4.20
983 6724 2.445654 CCTCCTGCTCCCTCCCTC 60.446 72.222 0.00 0.00 0.00 4.30
985 6726 4.465446 TCCTGCTCCCTCCCTCCG 62.465 72.222 0.00 0.00 0.00 4.63
1190 7091 4.020218 CCAAGGTTTGATCTACACTCTCCA 60.020 45.833 0.00 0.00 0.00 3.86
1241 7186 5.070446 ACTCATGGTGAACTCAACTAACTGA 59.930 40.000 0.00 0.00 33.92 3.41
1244 7189 3.709653 TGGTGAACTCAACTAACTGACCT 59.290 43.478 0.00 0.00 33.92 3.85
1245 7190 4.058817 GGTGAACTCAACTAACTGACCTG 58.941 47.826 0.00 0.00 0.00 4.00
1303 7254 3.908737 GCAGAACGACTGGTACCTT 57.091 52.632 14.36 0.00 45.82 3.50
1332 7283 2.986728 ACAAGGACAAGAAGTACCCCAT 59.013 45.455 0.00 0.00 0.00 4.00
1633 7814 7.336427 GTCCAGACTGTACAATACTGTAGTACT 59.664 40.741 16.70 0.00 40.32 2.73
1634 7815 8.542926 TCCAGACTGTACAATACTGTAGTACTA 58.457 37.037 16.70 0.00 40.32 1.82
1635 7816 8.610896 CCAGACTGTACAATACTGTAGTACTAC 58.389 40.741 23.58 23.58 40.32 2.73
1658 7847 1.212490 CAATTGCATTCACGGCGGT 59.788 52.632 13.24 0.00 0.00 5.68
1746 7943 5.459107 CGCTCATACTTTCTGTGTATGTACC 59.541 44.000 11.88 3.84 44.35 3.34
1753 7954 0.804544 CTGTGTATGTACCCGTGGCG 60.805 60.000 0.00 0.00 0.00 5.69
1802 8013 3.104512 AGTGAAGATTATGTCCGGGTGA 58.895 45.455 0.00 0.00 0.00 4.02
1854 8065 4.764050 TTGAAAAAGGAGAAAAACCCCC 57.236 40.909 0.00 0.00 0.00 5.40
1855 8066 2.696187 TGAAAAAGGAGAAAAACCCCCG 59.304 45.455 0.00 0.00 0.00 5.73
1856 8067 1.712056 AAAAGGAGAAAAACCCCCGG 58.288 50.000 0.00 0.00 0.00 5.73
1857 8068 0.854908 AAAGGAGAAAAACCCCCGGA 59.145 50.000 0.73 0.00 0.00 5.14
1858 8069 1.081481 AAGGAGAAAAACCCCCGGAT 58.919 50.000 0.73 0.00 0.00 4.18
1859 8070 0.624254 AGGAGAAAAACCCCCGGATC 59.376 55.000 0.73 0.00 0.00 3.36
1860 8071 0.624254 GGAGAAAAACCCCCGGATCT 59.376 55.000 0.73 0.00 0.00 2.75
1861 8072 1.408405 GGAGAAAAACCCCCGGATCTC 60.408 57.143 0.73 4.14 34.08 2.75
1862 8073 1.560146 GAGAAAAACCCCCGGATCTCT 59.440 52.381 0.73 0.00 32.54 3.10
1863 8074 1.282157 AGAAAAACCCCCGGATCTCTG 59.718 52.381 0.73 0.00 0.00 3.35
1864 8075 0.323451 AAAAACCCCCGGATCTCTGC 60.323 55.000 0.73 0.00 0.00 4.26
1865 8076 1.497309 AAAACCCCCGGATCTCTGCA 61.497 55.000 0.73 0.00 0.00 4.41
1866 8077 1.281925 AAACCCCCGGATCTCTGCAT 61.282 55.000 0.73 0.00 0.00 3.96
1867 8078 1.700042 AACCCCCGGATCTCTGCATC 61.700 60.000 0.73 0.00 0.00 3.91
1868 8079 2.142761 CCCCCGGATCTCTGCATCA 61.143 63.158 0.73 0.00 0.00 3.07
1869 8080 1.699054 CCCCCGGATCTCTGCATCAA 61.699 60.000 0.73 0.00 0.00 2.57
1870 8081 0.399454 CCCCGGATCTCTGCATCAAT 59.601 55.000 0.73 0.00 0.00 2.57
1871 8082 1.610102 CCCCGGATCTCTGCATCAATC 60.610 57.143 0.73 0.00 0.00 2.67
1872 8083 1.426423 CCGGATCTCTGCATCAATCG 58.574 55.000 0.00 0.00 0.00 3.34
1873 8084 1.000171 CCGGATCTCTGCATCAATCGA 60.000 52.381 0.00 0.00 0.00 3.59
1874 8085 2.353505 CCGGATCTCTGCATCAATCGAT 60.354 50.000 0.00 0.00 0.00 3.59
1875 8086 3.119352 CCGGATCTCTGCATCAATCGATA 60.119 47.826 0.00 0.00 0.00 2.92
1876 8087 3.856521 CGGATCTCTGCATCAATCGATAC 59.143 47.826 0.00 0.00 0.00 2.24
1877 8088 4.616835 CGGATCTCTGCATCAATCGATACA 60.617 45.833 0.00 0.00 0.00 2.29
1878 8089 5.417811 GGATCTCTGCATCAATCGATACAT 58.582 41.667 0.00 0.00 0.00 2.29
1879 8090 5.291371 GGATCTCTGCATCAATCGATACATG 59.709 44.000 0.00 5.23 0.00 3.21
1880 8091 3.992427 TCTCTGCATCAATCGATACATGC 59.008 43.478 24.72 24.72 41.75 4.06
1883 8094 3.469739 TGCATCAATCGATACATGCAGT 58.530 40.909 28.00 0.00 45.19 4.40
1884 8095 3.495753 TGCATCAATCGATACATGCAGTC 59.504 43.478 28.00 10.54 45.19 3.51
1885 8096 3.495753 GCATCAATCGATACATGCAGTCA 59.504 43.478 25.78 0.00 41.16 3.41
1886 8097 4.153655 GCATCAATCGATACATGCAGTCAT 59.846 41.667 25.78 0.47 41.16 3.06
1887 8098 5.670588 GCATCAATCGATACATGCAGTCATC 60.671 44.000 25.78 5.10 41.16 2.92
1888 8099 5.205759 TCAATCGATACATGCAGTCATCT 57.794 39.130 0.00 0.00 0.00 2.90
1889 8100 5.604565 TCAATCGATACATGCAGTCATCTT 58.395 37.500 0.00 0.00 0.00 2.40
1890 8101 6.748132 TCAATCGATACATGCAGTCATCTTA 58.252 36.000 0.00 0.00 0.00 2.10
1891 8102 7.381323 TCAATCGATACATGCAGTCATCTTAT 58.619 34.615 0.00 0.00 0.00 1.73
1892 8103 7.874528 TCAATCGATACATGCAGTCATCTTATT 59.125 33.333 0.00 0.00 0.00 1.40
1893 8104 9.143631 CAATCGATACATGCAGTCATCTTATTA 57.856 33.333 0.00 0.00 0.00 0.98
1894 8105 9.710900 AATCGATACATGCAGTCATCTTATTAA 57.289 29.630 0.00 0.00 0.00 1.40
1895 8106 9.710900 ATCGATACATGCAGTCATCTTATTAAA 57.289 29.630 0.00 0.00 0.00 1.52
1896 8107 9.541143 TCGATACATGCAGTCATCTTATTAAAA 57.459 29.630 0.00 0.00 0.00 1.52
1919 8130 9.725206 AAAAATAGTATAACAGAGTCCTAGGGA 57.275 33.333 9.46 0.00 0.00 4.20
1931 8142 1.982958 TCCTAGGGACACAAAAGGACC 59.017 52.381 9.46 0.00 31.41 4.46
1932 8143 1.702957 CCTAGGGACACAAAAGGACCA 59.297 52.381 0.00 0.00 0.00 4.02
1933 8144 2.308866 CCTAGGGACACAAAAGGACCAT 59.691 50.000 0.00 0.00 0.00 3.55
1934 8145 3.521937 CCTAGGGACACAAAAGGACCATA 59.478 47.826 0.00 0.00 0.00 2.74
1935 8146 4.018779 CCTAGGGACACAAAAGGACCATAA 60.019 45.833 0.00 0.00 0.00 1.90
1936 8147 4.675063 AGGGACACAAAAGGACCATAAT 57.325 40.909 0.00 0.00 0.00 1.28
1937 8148 4.600062 AGGGACACAAAAGGACCATAATC 58.400 43.478 0.00 0.00 0.00 1.75
1938 8149 4.044065 AGGGACACAAAAGGACCATAATCA 59.956 41.667 0.00 0.00 0.00 2.57
1939 8150 4.956075 GGGACACAAAAGGACCATAATCAT 59.044 41.667 0.00 0.00 0.00 2.45
1940 8151 5.422012 GGGACACAAAAGGACCATAATCATT 59.578 40.000 0.00 0.00 0.00 2.57
1941 8152 6.332630 GGACACAAAAGGACCATAATCATTG 58.667 40.000 0.00 0.00 0.00 2.82
1942 8153 6.071391 GGACACAAAAGGACCATAATCATTGT 60.071 38.462 0.00 0.00 0.00 2.71
1943 8154 6.690530 ACACAAAAGGACCATAATCATTGTG 58.309 36.000 12.26 12.26 34.46 3.33
1944 8155 5.577945 CACAAAAGGACCATAATCATTGTGC 59.422 40.000 0.00 0.00 32.02 4.57
1945 8156 5.245751 ACAAAAGGACCATAATCATTGTGCA 59.754 36.000 0.00 0.00 32.02 4.57
1946 8157 5.999205 AAAGGACCATAATCATTGTGCAA 57.001 34.783 0.00 0.00 0.00 4.08
1947 8158 5.999205 AAGGACCATAATCATTGTGCAAA 57.001 34.783 0.00 0.00 0.00 3.68
1948 8159 5.999205 AGGACCATAATCATTGTGCAAAA 57.001 34.783 0.00 0.00 0.00 2.44
1949 8160 5.723295 AGGACCATAATCATTGTGCAAAAC 58.277 37.500 0.00 0.00 0.00 2.43
1950 8161 4.562394 GGACCATAATCATTGTGCAAAACG 59.438 41.667 0.00 0.00 0.00 3.60
1951 8162 5.384063 ACCATAATCATTGTGCAAAACGA 57.616 34.783 0.00 0.00 0.00 3.85
1952 8163 5.777802 ACCATAATCATTGTGCAAAACGAA 58.222 33.333 0.00 0.00 0.00 3.85
1953 8164 6.219473 ACCATAATCATTGTGCAAAACGAAA 58.781 32.000 0.00 0.00 0.00 3.46
1954 8165 6.365789 ACCATAATCATTGTGCAAAACGAAAG 59.634 34.615 0.00 0.00 0.00 2.62
1955 8166 6.585702 CCATAATCATTGTGCAAAACGAAAGA 59.414 34.615 0.00 0.00 0.00 2.52
1956 8167 7.116090 CCATAATCATTGTGCAAAACGAAAGAA 59.884 33.333 0.00 0.00 0.00 2.52
1957 8168 6.900568 AATCATTGTGCAAAACGAAAGAAA 57.099 29.167 0.00 0.00 0.00 2.52
1958 8169 6.900568 ATCATTGTGCAAAACGAAAGAAAA 57.099 29.167 0.00 0.00 0.00 2.29
1959 8170 6.900568 TCATTGTGCAAAACGAAAGAAAAT 57.099 29.167 0.00 0.00 0.00 1.82
1960 8171 7.993821 TCATTGTGCAAAACGAAAGAAAATA 57.006 28.000 0.00 0.00 0.00 1.40
1961 8172 8.586570 TCATTGTGCAAAACGAAAGAAAATAT 57.413 26.923 0.00 0.00 0.00 1.28
1962 8173 9.684448 TCATTGTGCAAAACGAAAGAAAATATA 57.316 25.926 0.00 0.00 0.00 0.86
1973 8184 9.921637 AACGAAAGAAAATATAAAAAGGATGCA 57.078 25.926 0.00 0.00 0.00 3.96
1974 8185 9.921637 ACGAAAGAAAATATAAAAAGGATGCAA 57.078 25.926 0.00 0.00 0.00 4.08
1979 8190 9.822185 AGAAAATATAAAAAGGATGCAACATCC 57.178 29.630 17.14 17.14 38.47 3.51
1980 8191 8.647143 AAAATATAAAAAGGATGCAACATCCG 57.353 30.769 18.40 0.00 42.87 4.18
1981 8192 4.654091 ATAAAAAGGATGCAACATCCGG 57.346 40.909 18.40 0.00 42.87 5.14
1982 8193 0.532115 AAAAGGATGCAACATCCGGC 59.468 50.000 18.40 0.00 42.87 6.13
1983 8194 1.656818 AAAGGATGCAACATCCGGCG 61.657 55.000 18.40 0.00 42.87 6.46
1984 8195 2.513666 GGATGCAACATCCGGCGA 60.514 61.111 9.30 0.00 0.00 5.54
1985 8196 1.893808 GGATGCAACATCCGGCGAT 60.894 57.895 9.30 0.00 0.00 4.58
1986 8197 0.602638 GGATGCAACATCCGGCGATA 60.603 55.000 9.30 0.00 0.00 2.92
1987 8198 0.512952 GATGCAACATCCGGCGATAC 59.487 55.000 9.30 0.00 0.00 2.24
1988 8199 1.221466 ATGCAACATCCGGCGATACG 61.221 55.000 9.30 0.00 0.00 3.06
1996 8207 4.535425 CGGCGATACGGATCAGAC 57.465 61.111 8.69 1.73 31.78 3.51
1997 8208 1.950007 CGGCGATACGGATCAGACT 59.050 57.895 8.69 0.00 31.78 3.24
1998 8209 1.154197 CGGCGATACGGATCAGACTA 58.846 55.000 8.69 0.00 31.78 2.59
1999 8210 1.128878 CGGCGATACGGATCAGACTAG 59.871 57.143 8.69 0.00 31.78 2.57
2000 8211 1.469308 GGCGATACGGATCAGACTAGG 59.531 57.143 8.69 0.00 31.78 3.02
2001 8212 2.424557 GCGATACGGATCAGACTAGGA 58.575 52.381 8.69 0.00 31.78 2.94
2002 8213 3.011119 GCGATACGGATCAGACTAGGAT 58.989 50.000 8.69 0.00 31.78 3.24
2003 8214 3.181505 GCGATACGGATCAGACTAGGATG 60.182 52.174 8.69 0.00 31.78 3.51
2004 8215 3.181505 CGATACGGATCAGACTAGGATGC 60.182 52.174 8.69 0.00 31.78 3.91
2038 8252 7.698836 ATGGAATTAATTGTAATTTGCGAGC 57.301 32.000 5.17 0.00 39.53 5.03
2070 8296 0.037590 TTCCTTTCGGTGGGTCATGG 59.962 55.000 0.00 0.00 0.00 3.66
2073 8299 1.546773 CCTTTCGGTGGGTCATGGAAA 60.547 52.381 0.00 0.00 0.00 3.13
2079 8305 2.042944 GGGTCATGGAAAGGGGGC 60.043 66.667 0.00 0.00 0.00 5.80
2091 8317 0.544595 AAGGGGGCTCGAAGTAGTGT 60.545 55.000 0.00 0.00 0.00 3.55
2093 8319 1.448013 GGGGCTCGAAGTAGTGTGC 60.448 63.158 0.00 0.00 0.00 4.57
2095 8321 0.737715 GGGCTCGAAGTAGTGTGCAG 60.738 60.000 0.00 0.00 0.00 4.41
2135 8794 9.128107 CTTGCGAACAAACATTATCTACATTTT 57.872 29.630 0.00 0.00 34.74 1.82
2173 9067 4.101430 ACGGGTTATACCATTTACCGATGT 59.899 41.667 7.24 0.00 41.02 3.06
2238 9147 9.581289 TCCCATTTAGTGTTTCTCTTAAATCAA 57.419 29.630 0.00 0.00 0.00 2.57
2367 9280 9.521179 CTGATCGAACATCATAATTCATTAACG 57.479 33.333 0.00 0.00 0.00 3.18
2444 9534 4.332819 GCTACTTCACAGTTGACACAACTT 59.667 41.667 13.37 2.80 34.06 2.66
2445 9535 5.163754 GCTACTTCACAGTTGACACAACTTT 60.164 40.000 13.37 6.02 34.06 2.66
2446 9536 5.705609 ACTTCACAGTTGACACAACTTTT 57.294 34.783 13.37 2.84 0.00 2.27
2447 9537 6.084326 ACTTCACAGTTGACACAACTTTTT 57.916 33.333 13.37 0.68 0.00 1.94
2448 9538 7.209471 ACTTCACAGTTGACACAACTTTTTA 57.791 32.000 13.37 1.77 0.00 1.52
2449 9539 7.305474 ACTTCACAGTTGACACAACTTTTTAG 58.695 34.615 13.37 11.16 0.00 1.85
2450 9540 5.636837 TCACAGTTGACACAACTTTTTAGC 58.363 37.500 13.37 0.00 0.00 3.09
2554 9683 1.607251 CCTTTGTACACGGAGACACCC 60.607 57.143 0.00 0.00 34.64 4.61
2617 9981 4.045636 CCTTTTCAAGGGTCAAACACTG 57.954 45.455 0.00 0.00 45.27 3.66
2619 9983 1.398692 TTCAAGGGTCAAACACTGCC 58.601 50.000 0.00 0.00 28.25 4.85
2638 10002 5.048504 ACTGCCTACATGCATGCATAATTAC 60.049 40.000 31.73 20.76 41.16 1.89
2648 10173 8.683615 CATGCATGCATAATTACTAGATCCATT 58.316 33.333 31.73 2.14 34.91 3.16
2776 10640 5.047092 CCTTGTATTGAGAATTTGTGGCCTT 60.047 40.000 3.32 0.00 0.00 4.35
2779 10643 5.538053 TGTATTGAGAATTTGTGGCCTTTCA 59.462 36.000 3.32 0.00 0.00 2.69
2781 10645 5.350504 TTGAGAATTTGTGGCCTTTCAAA 57.649 34.783 18.12 18.12 37.82 2.69
2791 10655 4.404073 TGTGGCCTTTCAAATGTAACACTT 59.596 37.500 3.32 0.00 0.00 3.16
2795 10659 7.655732 GTGGCCTTTCAAATGTAACACTTTAAT 59.344 33.333 3.32 0.00 0.00 1.40
2828 10692 1.202746 ACTACCGTTACCCCGCAAAAA 60.203 47.619 0.00 0.00 0.00 1.94
2882 10754 0.389426 GAACAGATACACGGCGTGGT 60.389 55.000 39.03 28.50 37.94 4.16
2883 10755 0.034337 AACAGATACACGGCGTGGTT 59.966 50.000 39.03 29.15 37.94 3.67
2958 10836 0.666274 AGAAGAACATCGTCGCGCAA 60.666 50.000 8.75 0.00 30.11 4.85
2979 10857 1.304713 CCAAGCTGGCCAGAACCAT 60.305 57.895 37.21 13.35 39.54 3.55
3198 11109 2.035626 AAGCCCACCAACCCATCG 59.964 61.111 0.00 0.00 0.00 3.84
3206 11117 1.292223 CCAACCCATCGTCGTCAGT 59.708 57.895 0.00 0.00 0.00 3.41
3207 11118 0.528924 CCAACCCATCGTCGTCAGTA 59.471 55.000 0.00 0.00 0.00 2.74
3333 11247 3.379445 CCACCGCCCGAGTACAGT 61.379 66.667 0.00 0.00 0.00 3.55
3377 11291 0.318869 CTCGCTGCCTATGAGCTCAG 60.319 60.000 22.96 9.85 34.03 3.35
3402 11316 1.192146 TCTCTAACCCTGCGTTGGCT 61.192 55.000 0.00 0.00 40.82 4.75
3435 11349 1.000163 GACATGTCCTACATCGCCGAT 60.000 52.381 15.31 0.00 36.53 4.18
3677 11600 3.255395 ACAATCGCACCAATTGAATGTGA 59.745 39.130 20.98 20.98 37.51 3.58
3695 11618 5.584253 TGTGAAGATTCTAGTACTCCTGC 57.416 43.478 0.00 0.00 0.00 4.85
3709 11632 3.626930 ACTCCTGCACTAAAACCACAAA 58.373 40.909 0.00 0.00 0.00 2.83
3782 11705 9.959721 ATATGTCTAAACAAAAGGTGTCATACT 57.040 29.630 0.00 0.00 40.60 2.12
3873 11800 3.766545 ACACCATAATTGTGCAGAGGTT 58.233 40.909 0.00 0.00 37.22 3.50
3888 11815 0.248289 AGGTTATCGAACACCCACCG 59.752 55.000 11.80 0.00 37.29 4.94
3902 11829 2.288763 ACCCACCGAAATGCATGTTTTC 60.289 45.455 0.00 0.00 0.00 2.29
3906 11833 2.890311 ACCGAAATGCATGTTTTCTGGA 59.110 40.909 23.57 0.00 34.17 3.86
3909 11836 3.057315 CGAAATGCATGTTTTCTGGAGGT 60.057 43.478 0.00 0.00 32.18 3.85
3935 11862 5.705609 TTTCCTGAAGCATTGGTAACTTC 57.294 39.130 0.00 0.00 40.17 3.01
4010 11939 4.410555 AGGAGGTCCTATCCAAAGACAATC 59.589 45.833 0.00 0.00 46.48 2.67
4019 11948 7.770433 TCCTATCCAAAGACAATCTTACATGTG 59.230 37.037 9.11 0.00 35.27 3.21
4030 11959 9.760660 GACAATCTTACATGTGATACAGAAAAC 57.239 33.333 9.11 0.00 0.00 2.43
4039 11968 9.640963 ACATGTGATACAGAAAACTAGAAGTAC 57.359 33.333 0.00 0.00 0.00 2.73
4067 11996 0.695347 CCTAAGATGATGGAGGCCCC 59.305 60.000 0.00 0.03 0.00 5.80
4113 12044 3.641434 CCATGATTGGAGAACACCTCT 57.359 47.619 0.00 0.00 46.92 3.69
4121 12052 1.116308 GAGAACACCTCTCCCTAGCC 58.884 60.000 0.00 0.00 44.39 3.93
4128 12059 0.762461 CCTCTCCCTAGCCCCTCTTG 60.762 65.000 0.00 0.00 0.00 3.02
4429 12360 2.761786 CCCCCAATCTCACCATGAAT 57.238 50.000 0.00 0.00 0.00 2.57
4430 12361 3.882102 CCCCCAATCTCACCATGAATA 57.118 47.619 0.00 0.00 0.00 1.75
4431 12362 4.393239 CCCCCAATCTCACCATGAATAT 57.607 45.455 0.00 0.00 0.00 1.28
4432 12363 4.084287 CCCCCAATCTCACCATGAATATG 58.916 47.826 0.00 0.00 0.00 1.78
4433 12364 3.508793 CCCCAATCTCACCATGAATATGC 59.491 47.826 0.00 0.00 32.79 3.14
4434 12365 3.189910 CCCAATCTCACCATGAATATGCG 59.810 47.826 0.00 0.00 32.79 4.73
4435 12366 3.189910 CCAATCTCACCATGAATATGCGG 59.810 47.826 0.00 0.00 32.79 5.69
4436 12367 2.549064 TCTCACCATGAATATGCGGG 57.451 50.000 0.00 0.00 32.79 6.13
4437 12368 2.046292 TCTCACCATGAATATGCGGGA 58.954 47.619 0.00 0.00 32.79 5.14
4438 12369 2.437651 TCTCACCATGAATATGCGGGAA 59.562 45.455 0.00 0.00 32.79 3.97
4439 12370 2.549754 CTCACCATGAATATGCGGGAAC 59.450 50.000 0.00 0.00 32.79 3.62
4440 12371 2.172505 TCACCATGAATATGCGGGAACT 59.827 45.455 0.00 0.00 32.79 3.01
4441 12372 2.951642 CACCATGAATATGCGGGAACTT 59.048 45.455 0.00 0.00 32.79 2.66
4442 12373 3.381272 CACCATGAATATGCGGGAACTTT 59.619 43.478 0.00 0.00 32.79 2.66
4443 12374 3.632145 ACCATGAATATGCGGGAACTTTC 59.368 43.478 0.00 0.00 32.79 2.62
4444 12375 3.303990 CCATGAATATGCGGGAACTTTCG 60.304 47.826 0.00 0.00 32.79 3.46
4452 12383 4.445545 GGAACTTTCGCGCCGCTG 62.446 66.667 7.78 0.34 0.00 5.18
4462 12393 3.869272 CGCCGCTGCCTCATCAAC 61.869 66.667 0.00 0.00 0.00 3.18
4463 12394 2.437359 GCCGCTGCCTCATCAACT 60.437 61.111 0.00 0.00 0.00 3.16
4464 12395 2.042831 GCCGCTGCCTCATCAACTT 61.043 57.895 0.00 0.00 0.00 2.66
4465 12396 1.589716 GCCGCTGCCTCATCAACTTT 61.590 55.000 0.00 0.00 0.00 2.66
4466 12397 0.169672 CCGCTGCCTCATCAACTTTG 59.830 55.000 0.00 0.00 0.00 2.77
4467 12398 0.877071 CGCTGCCTCATCAACTTTGT 59.123 50.000 0.00 0.00 0.00 2.83
4468 12399 1.267806 CGCTGCCTCATCAACTTTGTT 59.732 47.619 0.00 0.00 0.00 2.83
4469 12400 2.669364 GCTGCCTCATCAACTTTGTTG 58.331 47.619 4.25 4.25 0.00 3.33
4470 12401 2.669364 CTGCCTCATCAACTTTGTTGC 58.331 47.619 5.65 0.00 0.00 4.17
4471 12402 2.030371 TGCCTCATCAACTTTGTTGCA 58.970 42.857 5.65 0.00 0.00 4.08
4472 12403 2.223782 TGCCTCATCAACTTTGTTGCAC 60.224 45.455 5.65 0.00 0.00 4.57
4473 12404 2.863704 GCCTCATCAACTTTGTTGCACC 60.864 50.000 5.65 0.00 0.00 5.01
4474 12405 2.605338 CCTCATCAACTTTGTTGCACCG 60.605 50.000 5.65 0.00 0.00 4.94
4475 12406 2.290367 CTCATCAACTTTGTTGCACCGA 59.710 45.455 5.65 0.00 0.00 4.69
4476 12407 2.884012 TCATCAACTTTGTTGCACCGAT 59.116 40.909 5.65 0.00 0.00 4.18
4477 12408 2.772568 TCAACTTTGTTGCACCGATG 57.227 45.000 5.65 0.00 0.00 3.84
4478 12409 2.293170 TCAACTTTGTTGCACCGATGA 58.707 42.857 5.65 0.00 0.00 2.92
4479 12410 2.032799 TCAACTTTGTTGCACCGATGAC 59.967 45.455 5.65 0.00 0.00 3.06
4480 12411 1.967319 ACTTTGTTGCACCGATGACT 58.033 45.000 0.00 0.00 0.00 3.41
4481 12412 3.120321 ACTTTGTTGCACCGATGACTA 57.880 42.857 0.00 0.00 0.00 2.59
4482 12413 3.674997 ACTTTGTTGCACCGATGACTAT 58.325 40.909 0.00 0.00 0.00 2.12
4483 12414 3.436704 ACTTTGTTGCACCGATGACTATG 59.563 43.478 0.00 0.00 0.00 2.23
4484 12415 2.760634 TGTTGCACCGATGACTATGT 57.239 45.000 0.00 0.00 0.00 2.29
4485 12416 2.345876 TGTTGCACCGATGACTATGTG 58.654 47.619 0.00 0.00 0.00 3.21
4487 12418 1.927210 GCACCGATGACTATGTGCG 59.073 57.895 0.00 0.00 43.83 5.34
4488 12419 1.490693 GCACCGATGACTATGTGCGG 61.491 60.000 0.00 0.00 43.83 5.69
4489 12420 0.875908 CACCGATGACTATGTGCGGG 60.876 60.000 0.00 0.00 45.80 6.13
4490 12421 1.327690 ACCGATGACTATGTGCGGGT 61.328 55.000 0.00 0.00 45.80 5.28
4491 12422 0.671796 CCGATGACTATGTGCGGGTA 59.328 55.000 0.00 0.00 38.40 3.69
4492 12423 1.335964 CCGATGACTATGTGCGGGTAG 60.336 57.143 0.00 0.00 38.40 3.18
4509 12440 4.530857 GCGCGTGCCCTGGACTAT 62.531 66.667 10.56 0.00 33.98 2.12
4510 12441 2.586079 CGCGTGCCCTGGACTATG 60.586 66.667 0.00 0.00 0.00 2.23
4511 12442 2.203070 GCGTGCCCTGGACTATGG 60.203 66.667 0.00 0.00 0.00 2.74
4512 12443 2.731571 GCGTGCCCTGGACTATGGA 61.732 63.158 0.00 0.00 0.00 3.41
4513 12444 2.044806 GCGTGCCCTGGACTATGGAT 62.045 60.000 0.00 0.00 0.00 3.41
4514 12445 0.034059 CGTGCCCTGGACTATGGATC 59.966 60.000 0.00 0.00 0.00 3.36
4515 12446 0.398318 GTGCCCTGGACTATGGATCC 59.602 60.000 4.20 4.20 36.70 3.36
4516 12447 0.030195 TGCCCTGGACTATGGATCCA 60.030 55.000 18.88 18.88 44.20 3.41
4517 12448 1.140312 GCCCTGGACTATGGATCCAA 58.860 55.000 20.67 7.48 45.67 3.53
4518 12449 1.494721 GCCCTGGACTATGGATCCAAA 59.505 52.381 20.67 0.00 45.67 3.28
4519 12450 2.487986 GCCCTGGACTATGGATCCAAAG 60.488 54.545 20.67 9.38 45.67 2.77
4520 12451 2.487986 CCCTGGACTATGGATCCAAAGC 60.488 54.545 20.67 8.55 45.67 3.51
4521 12452 2.173356 CCTGGACTATGGATCCAAAGCA 59.827 50.000 20.67 3.52 45.67 3.91
4522 12453 3.371917 CCTGGACTATGGATCCAAAGCAA 60.372 47.826 20.67 2.37 45.67 3.91
4523 12454 4.467769 CTGGACTATGGATCCAAAGCAAT 58.532 43.478 20.67 3.13 45.67 3.56
4524 12455 5.456619 CCTGGACTATGGATCCAAAGCAATA 60.457 44.000 20.67 4.31 45.67 1.90
4525 12456 5.624159 TGGACTATGGATCCAAAGCAATAG 58.376 41.667 20.67 16.51 43.43 1.73
4526 12457 4.457257 GGACTATGGATCCAAAGCAATAGC 59.543 45.833 20.67 10.29 37.31 2.97
4527 12458 5.747248 GGACTATGGATCCAAAGCAATAGCT 60.747 44.000 20.67 5.70 44.14 3.32
4528 12459 9.496580 TGGACTATGGATCCAAAGCAATAGCTT 62.497 40.741 20.67 0.00 45.83 3.74
4542 12473 5.582550 GCAATAGCTTTGTGGTATTTCTCC 58.417 41.667 0.00 0.00 44.18 3.71
4543 12474 5.450550 GCAATAGCTTTGTGGTATTTCTCCC 60.451 44.000 0.00 0.00 44.18 4.30
4544 12475 5.717119 ATAGCTTTGTGGTATTTCTCCCT 57.283 39.130 0.00 0.00 36.05 4.20
4545 12476 3.956744 AGCTTTGTGGTATTTCTCCCTC 58.043 45.455 0.00 0.00 0.00 4.30
4546 12477 2.678336 GCTTTGTGGTATTTCTCCCTCG 59.322 50.000 0.00 0.00 0.00 4.63
4547 12478 3.868754 GCTTTGTGGTATTTCTCCCTCGT 60.869 47.826 0.00 0.00 0.00 4.18
4548 12479 4.324267 CTTTGTGGTATTTCTCCCTCGTT 58.676 43.478 0.00 0.00 0.00 3.85
4549 12480 3.604875 TGTGGTATTTCTCCCTCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
4550 12481 3.170717 TGTGGTATTTCTCCCTCGTTCT 58.829 45.455 0.00 0.00 0.00 3.01
4551 12482 3.581332 TGTGGTATTTCTCCCTCGTTCTT 59.419 43.478 0.00 0.00 0.00 2.52
4552 12483 4.182339 GTGGTATTTCTCCCTCGTTCTTC 58.818 47.826 0.00 0.00 0.00 2.87
4553 12484 3.197116 TGGTATTTCTCCCTCGTTCTTCC 59.803 47.826 0.00 0.00 0.00 3.46
4554 12485 3.197116 GGTATTTCTCCCTCGTTCTTCCA 59.803 47.826 0.00 0.00 0.00 3.53
4555 12486 4.141688 GGTATTTCTCCCTCGTTCTTCCAT 60.142 45.833 0.00 0.00 0.00 3.41
4556 12487 5.070047 GGTATTTCTCCCTCGTTCTTCCATA 59.930 44.000 0.00 0.00 0.00 2.74
4557 12488 4.467198 TTTCTCCCTCGTTCTTCCATAC 57.533 45.455 0.00 0.00 0.00 2.39
4558 12489 3.095912 TCTCCCTCGTTCTTCCATACA 57.904 47.619 0.00 0.00 0.00 2.29
4559 12490 3.437213 TCTCCCTCGTTCTTCCATACAA 58.563 45.455 0.00 0.00 0.00 2.41
4560 12491 3.835978 TCTCCCTCGTTCTTCCATACAAA 59.164 43.478 0.00 0.00 0.00 2.83
4561 12492 4.469945 TCTCCCTCGTTCTTCCATACAAAT 59.530 41.667 0.00 0.00 0.00 2.32
4562 12493 5.659525 TCTCCCTCGTTCTTCCATACAAATA 59.340 40.000 0.00 0.00 0.00 1.40
4563 12494 6.326583 TCTCCCTCGTTCTTCCATACAAATAT 59.673 38.462 0.00 0.00 0.00 1.28
4564 12495 6.522054 TCCCTCGTTCTTCCATACAAATATC 58.478 40.000 0.00 0.00 0.00 1.63
4565 12496 6.326583 TCCCTCGTTCTTCCATACAAATATCT 59.673 38.462 0.00 0.00 0.00 1.98
4566 12497 6.992715 CCCTCGTTCTTCCATACAAATATCTT 59.007 38.462 0.00 0.00 0.00 2.40
4567 12498 8.148351 CCCTCGTTCTTCCATACAAATATCTTA 58.852 37.037 0.00 0.00 0.00 2.10
4568 12499 9.712305 CCTCGTTCTTCCATACAAATATCTTAT 57.288 33.333 0.00 0.00 0.00 1.73
4574 12505 9.716531 TCTTCCATACAAATATCTTATGAGCTG 57.283 33.333 0.00 0.00 0.00 4.24
4575 12506 9.499479 CTTCCATACAAATATCTTATGAGCTGT 57.501 33.333 0.00 0.00 0.00 4.40
4576 12507 9.494271 TTCCATACAAATATCTTATGAGCTGTC 57.506 33.333 0.00 0.00 0.00 3.51
4577 12508 8.874156 TCCATACAAATATCTTATGAGCTGTCT 58.126 33.333 0.00 0.00 0.00 3.41
4582 12513 9.319143 ACAAATATCTTATGAGCTGTCTAACAC 57.681 33.333 0.00 0.00 0.00 3.32
4583 12514 8.483218 CAAATATCTTATGAGCTGTCTAACACG 58.517 37.037 0.00 0.00 0.00 4.49
4584 12515 5.836821 ATCTTATGAGCTGTCTAACACGA 57.163 39.130 0.00 0.00 0.00 4.35
4585 12516 5.836821 TCTTATGAGCTGTCTAACACGAT 57.163 39.130 0.00 0.00 0.00 3.73
4586 12517 6.208988 TCTTATGAGCTGTCTAACACGATT 57.791 37.500 0.00 0.00 0.00 3.34
4587 12518 7.329588 TCTTATGAGCTGTCTAACACGATTA 57.670 36.000 0.00 0.00 0.00 1.75
4588 12519 7.941919 TCTTATGAGCTGTCTAACACGATTAT 58.058 34.615 0.00 0.00 0.00 1.28
4589 12520 7.862873 TCTTATGAGCTGTCTAACACGATTATG 59.137 37.037 0.00 0.00 0.00 1.90
4590 12521 5.576447 TGAGCTGTCTAACACGATTATGA 57.424 39.130 0.00 0.00 0.00 2.15
4591 12522 6.149129 TGAGCTGTCTAACACGATTATGAT 57.851 37.500 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.135382 TGCAAGACTTAAGATAAGACTACCTT 57.865 34.615 10.09 0.00 38.87 3.50
12 13 7.719871 TGCAAGACTTAAGATAAGACTACCT 57.280 36.000 10.09 0.00 0.00 3.08
13 14 7.982354 ACATGCAAGACTTAAGATAAGACTACC 59.018 37.037 10.09 0.31 0.00 3.18
14 15 8.934507 ACATGCAAGACTTAAGATAAGACTAC 57.065 34.615 10.09 1.43 0.00 2.73
28 29 9.836864 TGTCATATCTAAATTACATGCAAGACT 57.163 29.630 0.00 0.00 0.00 3.24
57 58 6.784031 AGATGACCCATTGTAGACTCTTTTT 58.216 36.000 0.00 0.00 0.00 1.94
62 63 5.606348 AAGAGATGACCCATTGTAGACTC 57.394 43.478 0.00 0.00 0.00 3.36
65 66 5.211973 AGCTAAGAGATGACCCATTGTAGA 58.788 41.667 0.00 0.00 0.00 2.59
66 67 5.543507 AGCTAAGAGATGACCCATTGTAG 57.456 43.478 0.00 0.00 0.00 2.74
67 68 5.957771 AAGCTAAGAGATGACCCATTGTA 57.042 39.130 0.00 0.00 0.00 2.41
69 70 7.222872 AGATAAAGCTAAGAGATGACCCATTG 58.777 38.462 0.00 0.00 0.00 2.82
70 71 7.385894 AGATAAAGCTAAGAGATGACCCATT 57.614 36.000 0.00 0.00 0.00 3.16
71 72 7.071698 TGAAGATAAAGCTAAGAGATGACCCAT 59.928 37.037 0.00 0.00 0.00 4.00
72 73 6.384015 TGAAGATAAAGCTAAGAGATGACCCA 59.616 38.462 0.00 0.00 0.00 4.51
73 74 6.821388 TGAAGATAAAGCTAAGAGATGACCC 58.179 40.000 0.00 0.00 0.00 4.46
98 99 9.975218 ACCACATTTTTAGGAATGACTAGTTAT 57.025 29.630 0.00 0.00 38.93 1.89
100 101 7.942341 TCACCACATTTTTAGGAATGACTAGTT 59.058 33.333 0.00 0.00 38.93 2.24
101 102 7.458397 TCACCACATTTTTAGGAATGACTAGT 58.542 34.615 0.00 0.00 38.93 2.57
102 103 7.824289 TCTCACCACATTTTTAGGAATGACTAG 59.176 37.037 4.76 0.00 38.93 2.57
103 104 7.606456 GTCTCACCACATTTTTAGGAATGACTA 59.394 37.037 4.76 0.00 38.93 2.59
104 105 6.431234 GTCTCACCACATTTTTAGGAATGACT 59.569 38.462 4.76 0.00 38.93 3.41
105 106 6.206634 TGTCTCACCACATTTTTAGGAATGAC 59.793 38.462 4.76 0.00 38.93 3.06
107 108 6.573664 TGTCTCACCACATTTTTAGGAATG 57.426 37.500 0.00 0.00 41.64 2.67
111 112 7.970061 CACAATATGTCTCACCACATTTTTAGG 59.030 37.037 0.00 0.00 38.07 2.69
113 114 7.176515 AGCACAATATGTCTCACCACATTTTTA 59.823 33.333 0.00 0.00 38.07 1.52
114 115 6.015180 AGCACAATATGTCTCACCACATTTTT 60.015 34.615 0.00 0.00 38.07 1.94
115 116 5.477984 AGCACAATATGTCTCACCACATTTT 59.522 36.000 0.00 0.00 38.07 1.82
116 117 5.012239 AGCACAATATGTCTCACCACATTT 58.988 37.500 0.00 0.00 38.07 2.32
117 118 4.592942 AGCACAATATGTCTCACCACATT 58.407 39.130 0.00 0.00 38.07 2.71
120 121 5.419542 TCTTAGCACAATATGTCTCACCAC 58.580 41.667 0.00 0.00 0.00 4.16
121 122 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
122 123 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
123 124 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
125 126 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
126 127 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
161 162 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
162 163 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
163 164 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
164 165 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
165 166 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
166 167 9.746457 ATAAGAAAAGGCTTGTCTTCTCTTATT 57.254 29.630 30.86 11.70 40.94 1.40
167 168 9.171877 CATAAGAAAAGGCTTGTCTTCTCTTAT 57.828 33.333 30.86 18.17 42.82 1.73
168 169 8.375506 TCATAAGAAAAGGCTTGTCTTCTCTTA 58.624 33.333 30.86 16.85 39.30 2.10
169 170 7.227156 TCATAAGAAAAGGCTTGTCTTCTCTT 58.773 34.615 30.86 18.21 37.66 2.85
170 171 6.773638 TCATAAGAAAAGGCTTGTCTTCTCT 58.226 36.000 30.86 16.87 33.70 3.10
172 173 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
173 174 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
174 175 7.001073 AGAACTCATAAGAAAAGGCTTGTCTT 58.999 34.615 30.04 30.04 35.77 3.01
176 177 6.652900 AGAGAACTCATAAGAAAAGGCTTGTC 59.347 38.462 9.51 9.51 0.00 3.18
180 181 6.351796 GGAGAGAGAACTCATAAGAAAAGGCT 60.352 42.308 4.64 0.00 44.79 4.58
181 182 5.815222 GGAGAGAGAACTCATAAGAAAAGGC 59.185 44.000 4.64 0.00 44.79 4.35
182 183 7.181569 AGGAGAGAGAACTCATAAGAAAAGG 57.818 40.000 4.64 0.00 44.79 3.11
183 184 7.093552 TGGAGGAGAGAGAACTCATAAGAAAAG 60.094 40.741 4.64 0.00 44.79 2.27
184 185 6.726299 TGGAGGAGAGAGAACTCATAAGAAAA 59.274 38.462 4.64 0.00 44.79 2.29
185 186 6.153680 GTGGAGGAGAGAGAACTCATAAGAAA 59.846 42.308 4.64 0.00 44.79 2.52
187 188 5.197451 GTGGAGGAGAGAGAACTCATAAGA 58.803 45.833 4.64 0.00 44.79 2.10
190 191 4.592997 TGTGGAGGAGAGAGAACTCATA 57.407 45.455 4.64 0.00 44.79 2.15
191 192 3.464720 TGTGGAGGAGAGAGAACTCAT 57.535 47.619 4.64 0.00 44.79 2.90
193 194 3.360867 TGATGTGGAGGAGAGAGAACTC 58.639 50.000 0.00 0.00 42.90 3.01
194 195 3.464720 TGATGTGGAGGAGAGAGAACT 57.535 47.619 0.00 0.00 0.00 3.01
198 199 4.959560 AATGATGATGTGGAGGAGAGAG 57.040 45.455 0.00 0.00 0.00 3.20
199 200 6.013898 GGATAAATGATGATGTGGAGGAGAGA 60.014 42.308 0.00 0.00 0.00 3.10
201 202 5.848369 AGGATAAATGATGATGTGGAGGAGA 59.152 40.000 0.00 0.00 0.00 3.71
202 203 6.124316 AGGATAAATGATGATGTGGAGGAG 57.876 41.667 0.00 0.00 0.00 3.69
203 204 6.295292 CGTAGGATAAATGATGATGTGGAGGA 60.295 42.308 0.00 0.00 0.00 3.71
204 205 5.871524 CGTAGGATAAATGATGATGTGGAGG 59.128 44.000 0.00 0.00 0.00 4.30
205 206 6.367149 CACGTAGGATAAATGATGATGTGGAG 59.633 42.308 0.00 0.00 0.00 3.86
207 208 5.409520 CCACGTAGGATAAATGATGATGTGG 59.590 44.000 0.00 0.00 41.22 4.17
208 209 5.106948 GCCACGTAGGATAAATGATGATGTG 60.107 44.000 8.04 0.00 41.22 3.21
209 210 4.997395 GCCACGTAGGATAAATGATGATGT 59.003 41.667 8.04 0.00 41.22 3.06
210 211 4.996758 TGCCACGTAGGATAAATGATGATG 59.003 41.667 8.04 0.00 41.22 3.07
211 212 4.997395 GTGCCACGTAGGATAAATGATGAT 59.003 41.667 8.04 0.00 41.22 2.45
212 213 4.100963 AGTGCCACGTAGGATAAATGATGA 59.899 41.667 8.04 0.00 41.22 2.92
214 215 4.345257 AGAGTGCCACGTAGGATAAATGAT 59.655 41.667 8.04 0.00 41.22 2.45
215 216 3.704566 AGAGTGCCACGTAGGATAAATGA 59.295 43.478 8.04 0.00 41.22 2.57
216 217 4.060038 AGAGTGCCACGTAGGATAAATG 57.940 45.455 8.04 0.00 41.22 2.32
217 218 4.755266 AAGAGTGCCACGTAGGATAAAT 57.245 40.909 8.04 0.00 41.22 1.40
218 219 5.419788 TCTTAAGAGTGCCACGTAGGATAAA 59.580 40.000 0.00 0.00 41.22 1.40
219 220 4.951715 TCTTAAGAGTGCCACGTAGGATAA 59.048 41.667 0.00 0.00 41.22 1.75
221 222 3.362706 TCTTAAGAGTGCCACGTAGGAT 58.637 45.455 0.00 0.00 41.22 3.24
222 223 2.799017 TCTTAAGAGTGCCACGTAGGA 58.201 47.619 0.00 0.00 41.22 2.94
223 224 3.802948 ATCTTAAGAGTGCCACGTAGG 57.197 47.619 11.53 0.00 41.84 3.18
224 225 4.202020 TGCTATCTTAAGAGTGCCACGTAG 60.202 45.833 21.91 12.89 0.00 3.51
226 227 2.496070 TGCTATCTTAAGAGTGCCACGT 59.504 45.455 21.91 3.78 0.00 4.49
227 228 2.860735 GTGCTATCTTAAGAGTGCCACG 59.139 50.000 21.91 4.77 0.00 4.94
228 229 3.198872 GGTGCTATCTTAAGAGTGCCAC 58.801 50.000 21.91 18.28 0.00 5.01
229 230 2.837591 TGGTGCTATCTTAAGAGTGCCA 59.162 45.455 21.91 16.44 0.00 4.92
230 231 3.543680 TGGTGCTATCTTAAGAGTGCC 57.456 47.619 21.91 14.67 0.00 5.01
231 232 4.878397 ACAATGGTGCTATCTTAAGAGTGC 59.122 41.667 19.50 19.50 0.00 4.40
232 233 7.041721 TGTACAATGGTGCTATCTTAAGAGTG 58.958 38.462 11.53 7.17 0.00 3.51
233 234 7.182817 TGTACAATGGTGCTATCTTAAGAGT 57.817 36.000 11.53 2.01 0.00 3.24
234 235 7.307632 GCATGTACAATGGTGCTATCTTAAGAG 60.308 40.741 11.53 0.00 34.85 2.85
236 237 6.293626 GGCATGTACAATGGTGCTATCTTAAG 60.294 42.308 16.47 0.00 37.70 1.85
237 238 5.530915 GGCATGTACAATGGTGCTATCTTAA 59.469 40.000 16.47 0.00 37.70 1.85
239 240 3.885297 GGCATGTACAATGGTGCTATCTT 59.115 43.478 16.47 0.00 37.70 2.40
240 241 3.480470 GGCATGTACAATGGTGCTATCT 58.520 45.455 16.47 0.00 37.70 1.98
241 242 2.554032 GGGCATGTACAATGGTGCTATC 59.446 50.000 16.47 3.12 37.70 2.08
242 243 2.175499 AGGGCATGTACAATGGTGCTAT 59.825 45.455 16.47 5.35 37.70 2.97
243 244 1.563879 AGGGCATGTACAATGGTGCTA 59.436 47.619 16.47 0.00 37.70 3.49
244 245 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40
246 247 2.127271 TGAGGGCATGTACAATGGTG 57.873 50.000 0.00 0.00 0.00 4.17
247 248 2.897271 TTGAGGGCATGTACAATGGT 57.103 45.000 0.00 0.00 0.00 3.55
248 249 6.409524 AATTATTGAGGGCATGTACAATGG 57.590 37.500 0.00 0.00 35.19 3.16
249 250 7.980662 TGAAAATTATTGAGGGCATGTACAATG 59.019 33.333 0.00 0.12 35.19 2.82
250 251 8.076910 TGAAAATTATTGAGGGCATGTACAAT 57.923 30.769 0.00 0.00 36.94 2.71
251 252 7.473735 TGAAAATTATTGAGGGCATGTACAA 57.526 32.000 0.00 0.00 0.00 2.41
252 253 7.473735 TTGAAAATTATTGAGGGCATGTACA 57.526 32.000 0.00 0.00 0.00 2.90
253 254 7.492344 CCTTTGAAAATTATTGAGGGCATGTAC 59.508 37.037 0.00 0.00 0.00 2.90
254 255 7.555087 CCTTTGAAAATTATTGAGGGCATGTA 58.445 34.615 0.00 0.00 0.00 2.29
255 256 6.408869 CCTTTGAAAATTATTGAGGGCATGT 58.591 36.000 0.00 0.00 0.00 3.21
256 257 5.295045 GCCTTTGAAAATTATTGAGGGCATG 59.705 40.000 0.00 0.00 36.31 4.06
257 258 5.045724 TGCCTTTGAAAATTATTGAGGGCAT 60.046 36.000 0.00 0.00 40.51 4.40
258 259 4.285517 TGCCTTTGAAAATTATTGAGGGCA 59.714 37.500 0.00 0.00 42.66 5.36
259 260 4.831107 TGCCTTTGAAAATTATTGAGGGC 58.169 39.130 0.00 0.00 36.75 5.19
260 261 6.041423 ACTGCCTTTGAAAATTATTGAGGG 57.959 37.500 0.00 0.00 0.00 4.30
261 262 9.657419 AATAACTGCCTTTGAAAATTATTGAGG 57.343 29.630 0.00 0.00 0.00 3.86
269 270 8.181904 TGAGAGAAATAACTGCCTTTGAAAAT 57.818 30.769 0.00 0.00 0.00 1.82
270 271 7.581213 TGAGAGAAATAACTGCCTTTGAAAA 57.419 32.000 0.00 0.00 0.00 2.29
282 5367 9.877178 TGGAGACTAGAAATTGAGAGAAATAAC 57.123 33.333 0.00 0.00 0.00 1.89
389 5487 2.469826 GCACATGCATGGATGTTGATG 58.530 47.619 28.03 18.31 41.59 3.07
406 5504 2.812011 ACCGATAAAGAAAGGTGTGCAC 59.188 45.455 10.75 10.75 35.36 4.57
505 5604 1.134694 GCGAACTTTGCCATCCGAC 59.865 57.895 0.00 0.00 0.00 4.79
510 5609 2.205074 CTAGATCGCGAACTTTGCCAT 58.795 47.619 24.31 0.00 0.00 4.40
569 5749 3.622612 CCATCTTCATGCGTGATGTTGTA 59.377 43.478 21.93 7.43 36.72 2.41
587 5767 5.929415 AGTCGTTTCTCTCTTTTCTTCCATC 59.071 40.000 0.00 0.00 0.00 3.51
591 5771 4.084276 GCCAGTCGTTTCTCTCTTTTCTTC 60.084 45.833 0.00 0.00 0.00 2.87
609 5789 6.569179 AATAAAAGATGTTTACGTGCCAGT 57.431 33.333 0.00 0.00 0.00 4.00
620 5800 9.762933 TTTAAGCAGCAGAAAATAAAAGATGTT 57.237 25.926 0.00 0.00 0.00 2.71
631 5811 5.539955 AGGAGGAAATTTAAGCAGCAGAAAA 59.460 36.000 0.00 0.00 0.00 2.29
646 5852 9.847224 ACGTTGTCATAAATTATAGGAGGAAAT 57.153 29.630 0.00 0.00 0.00 2.17
649 5855 8.014070 TGACGTTGTCATAAATTATAGGAGGA 57.986 34.615 0.00 0.00 37.67 3.71
773 6022 1.153524 AACCACAAGCATGGCCAGA 59.846 52.632 13.05 0.00 44.33 3.86
787 6051 2.203788 AGAGGGAGACGCCAACCA 60.204 61.111 0.00 0.00 38.95 3.67
788 6052 2.579738 GAGAGGGAGACGCCAACC 59.420 66.667 0.00 0.00 38.95 3.77
806 6414 0.606673 GGAGAAGTGCCACCAACCTC 60.607 60.000 0.00 0.00 0.00 3.85
884 6590 1.543802 GGAAACAATGGCAACGGATGA 59.456 47.619 0.00 0.00 42.51 2.92
941 6648 1.293924 GAAGATGATGGTGGCGAGTG 58.706 55.000 0.00 0.00 0.00 3.51
982 6723 1.204786 ATGGTGGATGGTTGACCGGA 61.205 55.000 9.46 0.00 39.43 5.14
983 6724 1.031571 CATGGTGGATGGTTGACCGG 61.032 60.000 0.00 0.00 39.43 5.28
985 6726 1.755179 CTCATGGTGGATGGTTGACC 58.245 55.000 0.00 0.00 32.26 4.02
1053 6925 3.729489 AGCTCCTCCTCCGTCGGA 61.729 66.667 14.54 14.54 0.00 4.55
1190 7091 0.541392 TGCGAGCTACCATTGTGGAT 59.459 50.000 2.45 0.00 40.96 3.41
1200 7104 2.543012 TGAGTACGTAGATGCGAGCTAC 59.457 50.000 0.00 0.00 35.90 3.58
1241 7186 0.106918 TCTGCGTTGTTTTCCCAGGT 60.107 50.000 0.00 0.00 0.00 4.00
1244 7189 2.029743 GCTCTGCGTTGTTTTCCCA 58.970 52.632 0.00 0.00 0.00 4.37
1245 7190 4.944249 GCTCTGCGTTGTTTTCCC 57.056 55.556 0.00 0.00 0.00 3.97
1303 7254 2.727123 TCTTGTCCTTGTGGCTGAAA 57.273 45.000 0.00 0.00 0.00 2.69
1476 7439 1.293924 CATGATCCAGTCGGACTTGC 58.706 55.000 8.18 0.00 46.79 4.01
1633 7814 1.201866 CGTGAATGCAATTGCGACGTA 60.202 47.619 24.58 7.91 45.83 3.57
1634 7815 0.452618 CGTGAATGCAATTGCGACGT 60.453 50.000 24.58 10.04 45.83 4.34
1635 7816 1.127571 CCGTGAATGCAATTGCGACG 61.128 55.000 24.58 24.91 45.83 5.12
1658 7847 2.762043 TCCATCCATGTCGGCCGA 60.762 61.111 27.28 27.28 33.14 5.54
1668 7857 2.224892 ACTAGCGAGCTATCTCCATCCA 60.225 50.000 5.18 0.00 35.94 3.41
1753 7954 2.044860 GTCGTCTACAGTCGCATATGC 58.955 52.381 18.08 18.08 37.78 3.14
1802 8013 0.041090 GTGTCCCCATTCCCAACCAT 59.959 55.000 0.00 0.00 0.00 3.55
1830 8041 5.946972 GGGGGTTTTTCTCCTTTTTCAAAAA 59.053 36.000 0.00 0.00 36.78 1.94
1831 8042 5.502079 GGGGGTTTTTCTCCTTTTTCAAAA 58.498 37.500 0.00 0.00 36.78 2.44
1832 8043 4.383226 CGGGGGTTTTTCTCCTTTTTCAAA 60.383 41.667 0.00 0.00 36.78 2.69
1833 8044 3.133183 CGGGGGTTTTTCTCCTTTTTCAA 59.867 43.478 0.00 0.00 36.78 2.69
1834 8045 2.696187 CGGGGGTTTTTCTCCTTTTTCA 59.304 45.455 0.00 0.00 36.78 2.69
1835 8046 2.036733 CCGGGGGTTTTTCTCCTTTTTC 59.963 50.000 0.00 0.00 36.78 2.29
1836 8047 2.043992 CCGGGGGTTTTTCTCCTTTTT 58.956 47.619 0.00 0.00 36.78 1.94
1837 8048 1.218450 TCCGGGGGTTTTTCTCCTTTT 59.782 47.619 0.00 0.00 36.78 2.27
1838 8049 0.854908 TCCGGGGGTTTTTCTCCTTT 59.145 50.000 0.00 0.00 36.78 3.11
1839 8050 1.005569 GATCCGGGGGTTTTTCTCCTT 59.994 52.381 0.00 0.00 36.78 3.36
1840 8051 0.624254 GATCCGGGGGTTTTTCTCCT 59.376 55.000 0.00 0.00 36.78 3.69
1841 8052 0.624254 AGATCCGGGGGTTTTTCTCC 59.376 55.000 0.00 0.00 35.52 3.71
1842 8053 1.560146 AGAGATCCGGGGGTTTTTCTC 59.440 52.381 0.00 2.87 0.00 2.87
1843 8054 1.282157 CAGAGATCCGGGGGTTTTTCT 59.718 52.381 0.00 0.00 0.00 2.52
1844 8055 1.751437 CAGAGATCCGGGGGTTTTTC 58.249 55.000 0.00 0.00 0.00 2.29
1845 8056 0.323451 GCAGAGATCCGGGGGTTTTT 60.323 55.000 0.00 0.00 0.00 1.94
1846 8057 1.303282 GCAGAGATCCGGGGGTTTT 59.697 57.895 0.00 0.00 0.00 2.43
1847 8058 1.281925 ATGCAGAGATCCGGGGGTTT 61.282 55.000 0.00 0.00 0.00 3.27
1848 8059 1.694169 ATGCAGAGATCCGGGGGTT 60.694 57.895 0.00 0.00 0.00 4.11
1849 8060 2.040464 ATGCAGAGATCCGGGGGT 60.040 61.111 0.00 0.00 0.00 4.95
1850 8061 1.699054 TTGATGCAGAGATCCGGGGG 61.699 60.000 0.00 0.00 0.00 5.40
1851 8062 0.399454 ATTGATGCAGAGATCCGGGG 59.601 55.000 0.00 0.00 0.00 5.73
1852 8063 1.805869 GATTGATGCAGAGATCCGGG 58.194 55.000 0.00 0.00 0.00 5.73
1853 8064 1.000171 TCGATTGATGCAGAGATCCGG 60.000 52.381 0.00 0.00 0.00 5.14
1854 8065 2.428888 TCGATTGATGCAGAGATCCG 57.571 50.000 0.00 0.00 0.00 4.18
1855 8066 4.814147 TGTATCGATTGATGCAGAGATCC 58.186 43.478 9.48 0.00 41.50 3.36
1863 8074 3.495753 TGACTGCATGTATCGATTGATGC 59.504 43.478 24.23 24.23 41.34 3.91
1864 8075 5.638234 AGATGACTGCATGTATCGATTGATG 59.362 40.000 1.71 7.57 33.69 3.07
1865 8076 5.791666 AGATGACTGCATGTATCGATTGAT 58.208 37.500 1.71 0.02 35.16 2.57
1866 8077 5.205759 AGATGACTGCATGTATCGATTGA 57.794 39.130 1.71 0.00 34.11 2.57
1867 8078 5.919272 AAGATGACTGCATGTATCGATTG 57.081 39.130 1.71 0.00 34.11 2.67
1868 8079 9.710900 TTAATAAGATGACTGCATGTATCGATT 57.289 29.630 1.71 0.78 34.11 3.34
1869 8080 9.710900 TTTAATAAGATGACTGCATGTATCGAT 57.289 29.630 2.16 2.16 34.11 3.59
1870 8081 9.541143 TTTTAATAAGATGACTGCATGTATCGA 57.459 29.630 0.00 0.00 34.11 3.59
1893 8104 9.725206 TCCCTAGGACTCTGTTATACTATTTTT 57.275 33.333 11.48 0.00 0.00 1.94
1911 8122 1.982958 GGTCCTTTTGTGTCCCTAGGA 59.017 52.381 11.48 0.00 32.77 2.94
1912 8123 1.702957 TGGTCCTTTTGTGTCCCTAGG 59.297 52.381 0.06 0.06 0.00 3.02
1913 8124 3.721087 ATGGTCCTTTTGTGTCCCTAG 57.279 47.619 0.00 0.00 0.00 3.02
1914 8125 5.251932 TGATTATGGTCCTTTTGTGTCCCTA 59.748 40.000 0.00 0.00 0.00 3.53
1915 8126 4.044065 TGATTATGGTCCTTTTGTGTCCCT 59.956 41.667 0.00 0.00 0.00 4.20
1916 8127 4.340617 TGATTATGGTCCTTTTGTGTCCC 58.659 43.478 0.00 0.00 0.00 4.46
1917 8128 6.071391 ACAATGATTATGGTCCTTTTGTGTCC 60.071 38.462 0.00 0.00 0.00 4.02
1918 8129 6.808212 CACAATGATTATGGTCCTTTTGTGTC 59.192 38.462 9.54 0.00 0.00 3.67
1919 8130 6.690530 CACAATGATTATGGTCCTTTTGTGT 58.309 36.000 9.54 0.00 0.00 3.72
1920 8131 5.577945 GCACAATGATTATGGTCCTTTTGTG 59.422 40.000 11.99 11.99 0.00 3.33
1921 8132 5.245751 TGCACAATGATTATGGTCCTTTTGT 59.754 36.000 0.00 0.00 0.00 2.83
1922 8133 5.722263 TGCACAATGATTATGGTCCTTTTG 58.278 37.500 0.00 0.00 0.00 2.44
1923 8134 5.999205 TGCACAATGATTATGGTCCTTTT 57.001 34.783 0.00 0.00 0.00 2.27
1924 8135 5.999205 TTGCACAATGATTATGGTCCTTT 57.001 34.783 0.00 0.00 0.00 3.11
1925 8136 5.999205 TTTGCACAATGATTATGGTCCTT 57.001 34.783 0.00 0.00 0.00 3.36
1926 8137 5.622007 CGTTTTGCACAATGATTATGGTCCT 60.622 40.000 0.00 0.00 0.00 3.85
1927 8138 4.562394 CGTTTTGCACAATGATTATGGTCC 59.438 41.667 0.00 0.00 0.00 4.46
1928 8139 5.398169 TCGTTTTGCACAATGATTATGGTC 58.602 37.500 3.35 0.00 0.00 4.02
1929 8140 5.384063 TCGTTTTGCACAATGATTATGGT 57.616 34.783 3.35 0.00 0.00 3.55
1930 8141 6.585702 TCTTTCGTTTTGCACAATGATTATGG 59.414 34.615 8.27 0.00 0.00 2.74
1931 8142 7.565450 TCTTTCGTTTTGCACAATGATTATG 57.435 32.000 8.27 0.00 0.00 1.90
1932 8143 8.586570 TTTCTTTCGTTTTGCACAATGATTAT 57.413 26.923 8.27 0.00 0.00 1.28
1933 8144 7.993821 TTTCTTTCGTTTTGCACAATGATTA 57.006 28.000 8.27 0.30 0.00 1.75
1934 8145 6.900568 TTTCTTTCGTTTTGCACAATGATT 57.099 29.167 8.27 0.00 0.00 2.57
1935 8146 6.900568 TTTTCTTTCGTTTTGCACAATGAT 57.099 29.167 8.27 0.00 0.00 2.45
1936 8147 6.900568 ATTTTCTTTCGTTTTGCACAATGA 57.099 29.167 3.35 3.35 0.00 2.57
1947 8158 9.921637 TGCATCCTTTTTATATTTTCTTTCGTT 57.078 25.926 0.00 0.00 0.00 3.85
1948 8159 9.921637 TTGCATCCTTTTTATATTTTCTTTCGT 57.078 25.926 0.00 0.00 0.00 3.85
1953 8164 9.822185 GGATGTTGCATCCTTTTTATATTTTCT 57.178 29.630 18.06 0.00 35.36 2.52
1954 8165 8.755018 CGGATGTTGCATCCTTTTTATATTTTC 58.245 33.333 21.42 0.00 36.07 2.29
1955 8166 7.710475 CCGGATGTTGCATCCTTTTTATATTTT 59.290 33.333 21.42 0.00 36.07 1.82
1956 8167 7.209475 CCGGATGTTGCATCCTTTTTATATTT 58.791 34.615 21.42 0.00 36.07 1.40
1957 8168 6.738453 GCCGGATGTTGCATCCTTTTTATATT 60.738 38.462 21.42 0.00 36.07 1.28
1958 8169 5.278957 GCCGGATGTTGCATCCTTTTTATAT 60.279 40.000 21.42 0.00 36.07 0.86
1959 8170 4.037446 GCCGGATGTTGCATCCTTTTTATA 59.963 41.667 21.42 0.00 36.07 0.98
1960 8171 3.181476 GCCGGATGTTGCATCCTTTTTAT 60.181 43.478 21.42 0.00 36.07 1.40
1961 8172 2.165437 GCCGGATGTTGCATCCTTTTTA 59.835 45.455 21.42 0.00 36.07 1.52
1962 8173 1.066929 GCCGGATGTTGCATCCTTTTT 60.067 47.619 21.42 0.00 36.07 1.94
1963 8174 0.532115 GCCGGATGTTGCATCCTTTT 59.468 50.000 21.42 0.00 36.07 2.27
1964 8175 1.656818 CGCCGGATGTTGCATCCTTT 61.657 55.000 21.42 0.00 36.07 3.11
1965 8176 2.114670 CGCCGGATGTTGCATCCTT 61.115 57.895 21.42 0.00 36.07 3.36
1966 8177 2.329539 ATCGCCGGATGTTGCATCCT 62.330 55.000 21.42 4.32 36.07 3.24
1967 8178 0.602638 TATCGCCGGATGTTGCATCC 60.603 55.000 5.05 16.00 34.00 3.51
1968 8179 0.512952 GTATCGCCGGATGTTGCATC 59.487 55.000 5.05 0.80 34.00 3.91
1969 8180 1.221466 CGTATCGCCGGATGTTGCAT 61.221 55.000 5.05 0.00 34.00 3.96
1970 8181 1.880796 CGTATCGCCGGATGTTGCA 60.881 57.895 5.05 0.00 34.00 4.08
1971 8182 2.928361 CGTATCGCCGGATGTTGC 59.072 61.111 5.05 0.00 34.00 4.17
1979 8190 1.128878 CTAGTCTGATCCGTATCGCCG 59.871 57.143 0.00 0.00 34.60 6.46
1980 8191 1.469308 CCTAGTCTGATCCGTATCGCC 59.531 57.143 0.00 0.00 34.60 5.54
1981 8192 2.424557 TCCTAGTCTGATCCGTATCGC 58.575 52.381 0.00 0.00 34.60 4.58
1982 8193 3.181505 GCATCCTAGTCTGATCCGTATCG 60.182 52.174 0.00 0.00 34.60 2.92
1983 8194 3.129638 GGCATCCTAGTCTGATCCGTATC 59.870 52.174 0.00 0.00 0.00 2.24
1984 8195 3.093057 GGCATCCTAGTCTGATCCGTAT 58.907 50.000 0.00 0.00 0.00 3.06
1985 8196 2.158519 TGGCATCCTAGTCTGATCCGTA 60.159 50.000 0.00 0.00 0.00 4.02
1986 8197 1.333177 GGCATCCTAGTCTGATCCGT 58.667 55.000 0.00 0.00 0.00 4.69
1987 8198 1.332195 TGGCATCCTAGTCTGATCCG 58.668 55.000 0.00 0.00 0.00 4.18
1988 8199 2.027377 CCATGGCATCCTAGTCTGATCC 60.027 54.545 0.00 0.00 0.00 3.36
1989 8200 2.636893 ACCATGGCATCCTAGTCTGATC 59.363 50.000 13.04 0.00 0.00 2.92
1990 8201 2.371179 CACCATGGCATCCTAGTCTGAT 59.629 50.000 13.04 0.00 0.00 2.90
1991 8202 1.764723 CACCATGGCATCCTAGTCTGA 59.235 52.381 13.04 0.00 0.00 3.27
1992 8203 1.813092 GCACCATGGCATCCTAGTCTG 60.813 57.143 13.04 0.00 0.00 3.51
1993 8204 0.471617 GCACCATGGCATCCTAGTCT 59.528 55.000 13.04 0.00 0.00 3.24
1994 8205 0.181114 TGCACCATGGCATCCTAGTC 59.819 55.000 13.04 0.00 39.25 2.59
1995 8206 0.625316 TTGCACCATGGCATCCTAGT 59.375 50.000 13.04 0.00 44.48 2.57
1996 8207 1.611977 CATTGCACCATGGCATCCTAG 59.388 52.381 13.04 0.00 44.48 3.02
1997 8208 1.694844 CATTGCACCATGGCATCCTA 58.305 50.000 13.04 0.00 44.48 2.94
1998 8209 1.046472 CCATTGCACCATGGCATCCT 61.046 55.000 13.04 0.00 44.48 3.24
1999 8210 1.044231 TCCATTGCACCATGGCATCC 61.044 55.000 13.04 0.00 44.48 3.51
2000 8211 0.825410 TTCCATTGCACCATGGCATC 59.175 50.000 13.04 1.15 44.48 3.91
2001 8212 1.502690 ATTCCATTGCACCATGGCAT 58.497 45.000 13.04 4.80 44.48 4.40
2002 8213 1.277579 AATTCCATTGCACCATGGCA 58.722 45.000 13.04 1.26 43.19 4.92
2003 8214 3.540314 TTAATTCCATTGCACCATGGC 57.460 42.857 13.04 0.00 37.84 4.40
2004 8215 5.430007 ACAATTAATTCCATTGCACCATGG 58.570 37.500 11.19 11.19 35.36 3.66
2038 8252 0.331616 AAAGGAAATCCCAGTCCCCG 59.668 55.000 0.00 0.00 37.41 5.73
2070 8296 0.903236 ACTACTTCGAGCCCCCTTTC 59.097 55.000 0.00 0.00 0.00 2.62
2073 8299 1.078710 ACACTACTTCGAGCCCCCT 59.921 57.895 0.00 0.00 0.00 4.79
2079 8305 2.061773 CCAACTGCACACTACTTCGAG 58.938 52.381 0.00 0.00 0.00 4.04
2091 8317 4.764679 CAAGTATGCTAAACCAACTGCA 57.235 40.909 0.00 0.00 39.83 4.41
2144 8803 8.424918 TCGGTAAATGGTATAACCCGTTATTAA 58.575 33.333 5.47 0.00 37.50 1.40
2151 8810 4.449743 CACATCGGTAAATGGTATAACCCG 59.550 45.833 0.00 0.00 37.50 5.28
2152 8811 5.370679 ACACATCGGTAAATGGTATAACCC 58.629 41.667 0.00 0.00 37.50 4.11
2254 9163 4.517832 ACTATGTCCGATCGTATGCTTACA 59.482 41.667 15.09 6.80 0.00 2.41
2444 9534 4.100344 TGAGACAGTGTGGTGTAGCTAAAA 59.900 41.667 0.00 0.00 0.00 1.52
2445 9535 3.639561 TGAGACAGTGTGGTGTAGCTAAA 59.360 43.478 0.00 0.00 0.00 1.85
2446 9536 3.227614 TGAGACAGTGTGGTGTAGCTAA 58.772 45.455 0.00 0.00 0.00 3.09
2447 9537 2.871453 TGAGACAGTGTGGTGTAGCTA 58.129 47.619 0.00 0.00 0.00 3.32
2448 9538 1.704641 TGAGACAGTGTGGTGTAGCT 58.295 50.000 0.00 0.00 0.00 3.32
2449 9539 2.035961 TCTTGAGACAGTGTGGTGTAGC 59.964 50.000 0.00 0.00 0.00 3.58
2450 9540 4.322080 TTCTTGAGACAGTGTGGTGTAG 57.678 45.455 0.00 0.00 0.00 2.74
2476 9571 7.072030 CAGCAGTAGTTTGTCATACAAGTTTC 58.928 38.462 0.00 0.00 39.53 2.78
2554 9683 6.959311 GGTTTGTTAGTAGTTTGTCATATGCG 59.041 38.462 0.00 0.00 0.00 4.73
2617 9981 5.633830 AGTAATTATGCATGCATGTAGGC 57.366 39.130 37.43 24.58 37.82 3.93
2619 9983 8.824781 GGATCTAGTAATTATGCATGCATGTAG 58.175 37.037 37.43 25.31 37.82 2.74
2638 10002 5.591472 TCAAAAGGCATGTCAATGGATCTAG 59.409 40.000 0.00 0.00 34.09 2.43
2795 10659 6.072563 GGGTAACGGTAGTTTCTATTGCAAAA 60.073 38.462 1.71 0.00 41.49 2.44
2805 10669 0.037419 TGCGGGGTAACGGTAGTTTC 60.037 55.000 0.00 0.00 41.49 2.78
2811 10675 4.575180 TTTTTGCGGGGTAACGGT 57.425 50.000 0.00 0.00 37.60 4.83
3198 11109 0.243095 GGTGGTCCAGTACTGACGAC 59.757 60.000 24.68 22.49 0.00 4.34
3206 11117 2.567169 CTGTTGATCAGGTGGTCCAGTA 59.433 50.000 0.00 0.00 40.23 2.74
3207 11118 1.349026 CTGTTGATCAGGTGGTCCAGT 59.651 52.381 0.00 0.00 40.23 4.00
3318 11229 3.379445 CCACTGTACTCGGGCGGT 61.379 66.667 0.00 0.00 0.00 5.68
3333 11247 1.610673 GAGAGCCTCCCAGTCACCA 60.611 63.158 0.00 0.00 0.00 4.17
3363 11277 2.817424 CCGCTGAGCTCATAGGCA 59.183 61.111 18.63 0.00 34.17 4.75
3369 11283 2.558380 TAGAGAGGCCGCTGAGCTCA 62.558 60.000 16.07 17.19 0.00 4.26
3377 11291 2.501610 CAGGGTTAGAGAGGCCGC 59.498 66.667 0.00 0.00 0.00 6.53
3402 11316 2.415491 GGACATGTCGTTCATCGTCTCA 60.415 50.000 19.33 0.00 40.80 3.27
3649 11572 6.751514 TTCAATTGGTGCGATTGTATTAGT 57.248 33.333 5.42 0.00 36.79 2.24
3677 11600 7.719871 TTTAGTGCAGGAGTACTAGAATCTT 57.280 36.000 0.00 0.00 42.61 2.40
3709 11632 9.753674 TGTACTCCCTTCATTTCATAATTCTTT 57.246 29.630 0.00 0.00 0.00 2.52
3725 11648 3.455910 TGCATCTTGCTATGTACTCCCTT 59.544 43.478 0.75 0.00 45.31 3.95
3759 11682 7.051623 ACAGTATGACACCTTTTGTTTAGACA 58.948 34.615 0.00 0.00 39.17 3.41
3852 11779 3.439857 ACCTCTGCACAATTATGGTGT 57.560 42.857 1.36 0.00 38.51 4.16
3870 11797 0.247185 TCGGTGGGTGTTCGATAACC 59.753 55.000 8.23 8.23 34.49 2.85
3873 11800 2.623535 CATTTCGGTGGGTGTTCGATA 58.376 47.619 0.00 0.00 32.80 2.92
3888 11815 4.525912 ACCTCCAGAAAACATGCATTTC 57.474 40.909 13.87 13.87 37.11 2.17
3919 11846 2.418976 GGGTCGAAGTTACCAATGCTTC 59.581 50.000 0.00 0.00 38.87 3.86
3928 11855 3.824414 CCACAATTGGGTCGAAGTTAC 57.176 47.619 10.83 0.00 39.57 2.50
3982 11911 4.016105 TCTTTGGATAGGACCTCCTCTCTT 60.016 45.833 0.00 0.00 44.77 2.85
3984 11913 3.639561 GTCTTTGGATAGGACCTCCTCTC 59.360 52.174 0.00 0.00 44.77 3.20
4039 11968 7.337942 GGCCTCCATCATCTTAGGTTATTTATG 59.662 40.741 0.00 0.00 0.00 1.90
4074 12005 6.295249 TCATGGATGTTTGTGTAGTCTTTGA 58.705 36.000 0.00 0.00 0.00 2.69
4113 12044 1.003051 GACCAAGAGGGGCTAGGGA 59.997 63.158 0.00 0.00 43.78 4.20
4410 12341 2.761786 ATTCATGGTGAGATTGGGGG 57.238 50.000 0.00 0.00 0.00 5.40
4411 12342 3.508793 GCATATTCATGGTGAGATTGGGG 59.491 47.826 0.00 0.00 32.36 4.96
4412 12343 3.189910 CGCATATTCATGGTGAGATTGGG 59.810 47.826 0.00 0.00 32.36 4.12
4413 12344 3.189910 CCGCATATTCATGGTGAGATTGG 59.810 47.826 0.00 0.00 32.36 3.16
4414 12345 3.189910 CCCGCATATTCATGGTGAGATTG 59.810 47.826 0.00 0.00 32.36 2.67
4415 12346 3.072915 TCCCGCATATTCATGGTGAGATT 59.927 43.478 0.00 0.00 32.36 2.40
4416 12347 2.639347 TCCCGCATATTCATGGTGAGAT 59.361 45.455 0.00 0.00 32.36 2.75
4417 12348 2.046292 TCCCGCATATTCATGGTGAGA 58.954 47.619 0.00 0.00 32.36 3.27
4418 12349 2.549064 TCCCGCATATTCATGGTGAG 57.451 50.000 0.00 0.00 32.36 3.51
4419 12350 2.172505 AGTTCCCGCATATTCATGGTGA 59.827 45.455 0.00 0.00 32.36 4.02
4420 12351 2.575532 AGTTCCCGCATATTCATGGTG 58.424 47.619 0.00 0.00 32.36 4.17
4421 12352 3.297134 AAGTTCCCGCATATTCATGGT 57.703 42.857 0.00 0.00 32.36 3.55
4422 12353 3.303990 CGAAAGTTCCCGCATATTCATGG 60.304 47.826 0.00 0.00 32.36 3.66
4423 12354 3.877064 CGAAAGTTCCCGCATATTCATG 58.123 45.455 0.00 0.00 35.07 3.07
4435 12366 4.445545 CAGCGGCGCGAAAGTTCC 62.446 66.667 27.59 0.00 0.00 3.62
4445 12376 3.869272 GTTGATGAGGCAGCGGCG 61.869 66.667 0.51 0.51 42.47 6.46
4446 12377 1.589716 AAAGTTGATGAGGCAGCGGC 61.590 55.000 0.00 0.00 40.13 6.53
4447 12378 0.169672 CAAAGTTGATGAGGCAGCGG 59.830 55.000 0.00 0.00 0.00 5.52
4448 12379 0.877071 ACAAAGTTGATGAGGCAGCG 59.123 50.000 0.00 0.00 0.00 5.18
4449 12380 2.669364 CAACAAAGTTGATGAGGCAGC 58.331 47.619 3.91 0.00 33.35 5.25
4450 12381 2.034939 TGCAACAAAGTTGATGAGGCAG 59.965 45.455 13.58 0.00 33.35 4.85
4451 12382 2.030371 TGCAACAAAGTTGATGAGGCA 58.970 42.857 13.58 0.69 33.35 4.75
4452 12383 2.397549 GTGCAACAAAGTTGATGAGGC 58.602 47.619 13.58 0.00 36.32 4.70
4453 12384 2.605338 CGGTGCAACAAAGTTGATGAGG 60.605 50.000 13.58 0.00 39.98 3.86
4454 12385 2.290367 TCGGTGCAACAAAGTTGATGAG 59.710 45.455 13.58 2.66 39.98 2.90
4455 12386 2.293170 TCGGTGCAACAAAGTTGATGA 58.707 42.857 13.58 2.73 39.98 2.92
4456 12387 2.772568 TCGGTGCAACAAAGTTGATG 57.227 45.000 13.58 2.37 39.98 3.07
4457 12388 2.884012 TCATCGGTGCAACAAAGTTGAT 59.116 40.909 13.58 0.00 39.98 2.57
4458 12389 2.032799 GTCATCGGTGCAACAAAGTTGA 59.967 45.455 13.58 0.00 39.98 3.18
4459 12390 2.033299 AGTCATCGGTGCAACAAAGTTG 59.967 45.455 0.98 5.56 39.98 3.16
4460 12391 2.297701 AGTCATCGGTGCAACAAAGTT 58.702 42.857 0.98 0.00 39.98 2.66
4461 12392 1.967319 AGTCATCGGTGCAACAAAGT 58.033 45.000 0.98 0.00 39.98 2.66
4462 12393 3.436704 ACATAGTCATCGGTGCAACAAAG 59.563 43.478 0.98 0.00 39.98 2.77
4463 12394 3.188254 CACATAGTCATCGGTGCAACAAA 59.812 43.478 0.98 0.00 39.98 2.83
4464 12395 2.741517 CACATAGTCATCGGTGCAACAA 59.258 45.455 0.98 0.00 39.98 2.83
4465 12396 2.345876 CACATAGTCATCGGTGCAACA 58.654 47.619 0.98 0.00 39.98 3.33
4470 12401 0.875908 CCCGCACATAGTCATCGGTG 60.876 60.000 0.00 0.00 38.54 4.94
4471 12402 1.327690 ACCCGCACATAGTCATCGGT 61.328 55.000 0.00 0.00 38.54 4.69
4472 12403 0.671796 TACCCGCACATAGTCATCGG 59.328 55.000 0.00 0.00 39.79 4.18
4473 12404 1.930817 GCTACCCGCACATAGTCATCG 60.931 57.143 0.00 0.00 38.92 3.84
4474 12405 1.784525 GCTACCCGCACATAGTCATC 58.215 55.000 0.00 0.00 38.92 2.92
4475 12406 0.032130 CGCTACCCGCACATAGTCAT 59.968 55.000 0.00 0.00 39.08 3.06
4476 12407 1.435925 CGCTACCCGCACATAGTCA 59.564 57.895 0.00 0.00 39.08 3.41
4477 12408 4.320971 CGCTACCCGCACATAGTC 57.679 61.111 0.00 0.00 39.08 2.59
4492 12423 4.530857 ATAGTCCAGGGCACGCGC 62.531 66.667 5.73 0.00 37.44 6.86
4493 12424 2.586079 CATAGTCCAGGGCACGCG 60.586 66.667 3.53 3.53 0.00 6.01
4494 12425 2.044806 ATCCATAGTCCAGGGCACGC 62.045 60.000 0.00 0.00 0.00 5.34
4495 12426 0.034059 GATCCATAGTCCAGGGCACG 59.966 60.000 0.00 0.00 0.00 5.34
4496 12427 0.398318 GGATCCATAGTCCAGGGCAC 59.602 60.000 6.95 0.00 35.76 5.01
4497 12428 0.030195 TGGATCCATAGTCCAGGGCA 60.030 55.000 11.44 0.00 40.72 5.36
4498 12429 1.140312 TTGGATCCATAGTCCAGGGC 58.860 55.000 17.06 0.00 45.85 5.19
4499 12430 2.487986 GCTTTGGATCCATAGTCCAGGG 60.488 54.545 26.86 7.35 45.85 4.45
4500 12431 2.173356 TGCTTTGGATCCATAGTCCAGG 59.827 50.000 26.86 9.78 45.85 4.45
4501 12432 3.565764 TGCTTTGGATCCATAGTCCAG 57.434 47.619 26.86 13.23 45.85 3.86
4502 12433 4.524802 ATTGCTTTGGATCCATAGTCCA 57.475 40.909 26.86 17.43 43.77 4.02
4503 12434 4.457257 GCTATTGCTTTGGATCCATAGTCC 59.543 45.833 26.86 15.45 36.03 3.85
4504 12435 5.619625 GCTATTGCTTTGGATCCATAGTC 57.380 43.478 26.86 20.49 36.03 2.59
4519 12450 5.450550 GGGAGAAATACCACAAAGCTATTGC 60.451 44.000 8.09 0.00 40.05 3.56
4520 12451 5.888161 AGGGAGAAATACCACAAAGCTATTG 59.112 40.000 6.98 6.98 0.00 1.90
4521 12452 6.079712 AGGGAGAAATACCACAAAGCTATT 57.920 37.500 0.00 0.00 0.00 1.73
4522 12453 5.685075 CGAGGGAGAAATACCACAAAGCTAT 60.685 44.000 0.00 0.00 0.00 2.97
4523 12454 4.382685 CGAGGGAGAAATACCACAAAGCTA 60.383 45.833 0.00 0.00 0.00 3.32
4524 12455 3.619979 CGAGGGAGAAATACCACAAAGCT 60.620 47.826 0.00 0.00 0.00 3.74
4525 12456 2.678336 CGAGGGAGAAATACCACAAAGC 59.322 50.000 0.00 0.00 0.00 3.51
4526 12457 3.939066 ACGAGGGAGAAATACCACAAAG 58.061 45.455 0.00 0.00 0.00 2.77
4527 12458 4.041198 AGAACGAGGGAGAAATACCACAAA 59.959 41.667 0.00 0.00 0.00 2.83
4528 12459 3.581332 AGAACGAGGGAGAAATACCACAA 59.419 43.478 0.00 0.00 0.00 3.33
4529 12460 3.170717 AGAACGAGGGAGAAATACCACA 58.829 45.455 0.00 0.00 0.00 4.17
4530 12461 3.889520 AGAACGAGGGAGAAATACCAC 57.110 47.619 0.00 0.00 0.00 4.16
4531 12462 3.197116 GGAAGAACGAGGGAGAAATACCA 59.803 47.826 0.00 0.00 0.00 3.25
4532 12463 3.197116 TGGAAGAACGAGGGAGAAATACC 59.803 47.826 0.00 0.00 0.00 2.73
4533 12464 4.467198 TGGAAGAACGAGGGAGAAATAC 57.533 45.455 0.00 0.00 0.00 1.89
4534 12465 5.659525 TGTATGGAAGAACGAGGGAGAAATA 59.340 40.000 0.00 0.00 0.00 1.40
4535 12466 4.469945 TGTATGGAAGAACGAGGGAGAAAT 59.530 41.667 0.00 0.00 0.00 2.17
4536 12467 3.835978 TGTATGGAAGAACGAGGGAGAAA 59.164 43.478 0.00 0.00 0.00 2.52
4537 12468 3.437213 TGTATGGAAGAACGAGGGAGAA 58.563 45.455 0.00 0.00 0.00 2.87
4538 12469 3.095912 TGTATGGAAGAACGAGGGAGA 57.904 47.619 0.00 0.00 0.00 3.71
4539 12470 3.887621 TTGTATGGAAGAACGAGGGAG 57.112 47.619 0.00 0.00 0.00 4.30
4540 12471 4.837093 ATTTGTATGGAAGAACGAGGGA 57.163 40.909 0.00 0.00 0.00 4.20
4541 12472 6.525629 AGATATTTGTATGGAAGAACGAGGG 58.474 40.000 0.00 0.00 0.00 4.30
4542 12473 9.712305 ATAAGATATTTGTATGGAAGAACGAGG 57.288 33.333 0.00 0.00 0.00 4.63
4548 12479 9.716531 CAGCTCATAAGATATTTGTATGGAAGA 57.283 33.333 0.00 0.00 0.00 2.87
4549 12480 9.499479 ACAGCTCATAAGATATTTGTATGGAAG 57.501 33.333 0.00 0.00 0.00 3.46
4550 12481 9.494271 GACAGCTCATAAGATATTTGTATGGAA 57.506 33.333 0.00 0.00 0.00 3.53
4551 12482 8.874156 AGACAGCTCATAAGATATTTGTATGGA 58.126 33.333 0.00 0.00 0.00 3.41
4556 12487 9.319143 GTGTTAGACAGCTCATAAGATATTTGT 57.681 33.333 0.00 0.00 0.00 2.83
4557 12488 8.483218 CGTGTTAGACAGCTCATAAGATATTTG 58.517 37.037 0.00 0.00 0.00 2.32
4558 12489 8.414003 TCGTGTTAGACAGCTCATAAGATATTT 58.586 33.333 0.00 0.00 0.00 1.40
4559 12490 7.941919 TCGTGTTAGACAGCTCATAAGATATT 58.058 34.615 0.00 0.00 0.00 1.28
4560 12491 7.511959 TCGTGTTAGACAGCTCATAAGATAT 57.488 36.000 0.00 0.00 0.00 1.63
4561 12492 6.937436 TCGTGTTAGACAGCTCATAAGATA 57.063 37.500 0.00 0.00 0.00 1.98
4562 12493 5.836821 TCGTGTTAGACAGCTCATAAGAT 57.163 39.130 0.00 0.00 0.00 2.40
4563 12494 5.836821 ATCGTGTTAGACAGCTCATAAGA 57.163 39.130 0.00 0.00 0.00 2.10
4564 12495 7.862873 TCATAATCGTGTTAGACAGCTCATAAG 59.137 37.037 0.00 0.00 0.00 1.73
4565 12496 7.712797 TCATAATCGTGTTAGACAGCTCATAA 58.287 34.615 0.00 0.00 0.00 1.90
4566 12497 7.272037 TCATAATCGTGTTAGACAGCTCATA 57.728 36.000 0.00 0.00 0.00 2.15
4567 12498 6.149129 TCATAATCGTGTTAGACAGCTCAT 57.851 37.500 0.00 0.00 0.00 2.90
4568 12499 5.576447 TCATAATCGTGTTAGACAGCTCA 57.424 39.130 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.