Multiple sequence alignment - TraesCS4A01G420500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G420500 chr4A 100.000 2549 0 0 1 2549 690992991 690995539 0.000000e+00 4708.0
1 TraesCS4A01G420500 chr4A 98.255 573 10 0 1 573 691009347 691009919 0.000000e+00 1003.0
2 TraesCS4A01G420500 chr4A 97.731 573 12 1 1 573 690983864 690984435 0.000000e+00 985.0
3 TraesCS4A01G420500 chr4A 93.956 182 10 1 23 203 691018002 691018183 8.980000e-70 274.0
4 TraesCS4A01G420500 chr4A 93.023 86 6 0 488 573 691018182 691018267 2.660000e-25 126.0
5 TraesCS4A01G420500 chr2B 99.242 1978 14 1 573 2549 781094240 781096217 0.000000e+00 3568.0
6 TraesCS4A01G420500 chr2B 99.091 1981 17 1 570 2549 776222958 776224938 0.000000e+00 3557.0
7 TraesCS4A01G420500 chr4B 99.141 1979 14 3 573 2549 368430368 368428391 0.000000e+00 3557.0
8 TraesCS4A01G420500 chr6A 99.090 1979 15 3 573 2549 616131295 616133272 0.000000e+00 3552.0
9 TraesCS4A01G420500 chr6A 83.908 87 8 4 491 573 123504590 123504674 7.560000e-11 78.7
10 TraesCS4A01G420500 chr3A 99.040 1979 17 2 572 2549 54951916 54953893 0.000000e+00 3548.0
11 TraesCS4A01G420500 chr7A 98.989 1979 19 1 572 2549 39015366 39017344 0.000000e+00 3542.0
12 TraesCS4A01G420500 chr5B 98.843 1988 20 3 565 2549 641128789 641126802 0.000000e+00 3541.0
13 TraesCS4A01G420500 chr3B 98.989 1978 18 2 573 2549 702857655 702855679 0.000000e+00 3541.0
14 TraesCS4A01G420500 chr3B 87.654 81 5 4 494 573 4320236 4320160 3.490000e-14 89.8
15 TraesCS4A01G420500 chr2A 98.989 1978 19 1 573 2549 682509134 682507157 0.000000e+00 3541.0
16 TraesCS4A01G420500 chr7D 79.070 129 23 3 1 127 34311984 34311858 4.520000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G420500 chr4A 690992991 690995539 2548 False 4708 4708 100.000 1 2549 1 chr4A.!!$F2 2548
1 TraesCS4A01G420500 chr4A 691009347 691009919 572 False 1003 1003 98.255 1 573 1 chr4A.!!$F3 572
2 TraesCS4A01G420500 chr4A 690983864 690984435 571 False 985 985 97.731 1 573 1 chr4A.!!$F1 572
3 TraesCS4A01G420500 chr2B 781094240 781096217 1977 False 3568 3568 99.242 573 2549 1 chr2B.!!$F2 1976
4 TraesCS4A01G420500 chr2B 776222958 776224938 1980 False 3557 3557 99.091 570 2549 1 chr2B.!!$F1 1979
5 TraesCS4A01G420500 chr4B 368428391 368430368 1977 True 3557 3557 99.141 573 2549 1 chr4B.!!$R1 1976
6 TraesCS4A01G420500 chr6A 616131295 616133272 1977 False 3552 3552 99.090 573 2549 1 chr6A.!!$F2 1976
7 TraesCS4A01G420500 chr3A 54951916 54953893 1977 False 3548 3548 99.040 572 2549 1 chr3A.!!$F1 1977
8 TraesCS4A01G420500 chr7A 39015366 39017344 1978 False 3542 3542 98.989 572 2549 1 chr7A.!!$F1 1977
9 TraesCS4A01G420500 chr5B 641126802 641128789 1987 True 3541 3541 98.843 565 2549 1 chr5B.!!$R1 1984
10 TraesCS4A01G420500 chr3B 702855679 702857655 1976 True 3541 3541 98.989 573 2549 1 chr3B.!!$R2 1976
11 TraesCS4A01G420500 chr2A 682507157 682509134 1977 True 3541 3541 98.989 573 2549 1 chr2A.!!$R1 1976

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.106894 GGGTGTAGGGCTGCAGTATC 59.893 60.0 16.64 5.47 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 2201 1.251527 AAACACCACAAACCCACGCA 61.252 50.0 0.0 0.0 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 125 5.174395 GCACCAGGTATATGCTCTCTATTG 58.826 45.833 0.00 0.00 36.40 1.90
125 126 5.047021 GCACCAGGTATATGCTCTCTATTGA 60.047 44.000 0.00 0.00 36.40 2.57
126 127 6.393990 CACCAGGTATATGCTCTCTATTGAC 58.606 44.000 0.00 0.00 0.00 3.18
127 128 6.210385 CACCAGGTATATGCTCTCTATTGACT 59.790 42.308 0.00 0.00 0.00 3.41
128 129 6.784969 ACCAGGTATATGCTCTCTATTGACTT 59.215 38.462 0.00 0.00 0.00 3.01
129 130 7.291182 ACCAGGTATATGCTCTCTATTGACTTT 59.709 37.037 0.00 0.00 0.00 2.66
130 131 7.601886 CCAGGTATATGCTCTCTATTGACTTTG 59.398 40.741 0.00 0.00 0.00 2.77
131 132 8.147058 CAGGTATATGCTCTCTATTGACTTTGT 58.853 37.037 0.00 0.00 0.00 2.83
132 133 8.709308 AGGTATATGCTCTCTATTGACTTTGTT 58.291 33.333 0.00 0.00 0.00 2.83
133 134 8.768955 GGTATATGCTCTCTATTGACTTTGTTG 58.231 37.037 0.00 0.00 0.00 3.33
134 135 9.534565 GTATATGCTCTCTATTGACTTTGTTGA 57.465 33.333 0.00 0.00 0.00 3.18
136 137 7.750229 ATGCTCTCTATTGACTTTGTTGAAA 57.250 32.000 0.00 0.00 0.00 2.69
137 138 7.750229 TGCTCTCTATTGACTTTGTTGAAAT 57.250 32.000 0.00 0.00 0.00 2.17
138 139 8.846943 TGCTCTCTATTGACTTTGTTGAAATA 57.153 30.769 0.00 0.00 0.00 1.40
139 140 9.453572 TGCTCTCTATTGACTTTGTTGAAATAT 57.546 29.630 0.00 0.00 0.00 1.28
140 141 9.713740 GCTCTCTATTGACTTTGTTGAAATATG 57.286 33.333 0.00 0.00 0.00 1.78
152 153 9.773328 CTTTGTTGAAATATGTGTATGTACAGG 57.227 33.333 0.33 0.00 36.78 4.00
153 154 7.857734 TGTTGAAATATGTGTATGTACAGGG 57.142 36.000 0.33 0.00 36.78 4.45
154 155 7.398829 TGTTGAAATATGTGTATGTACAGGGT 58.601 34.615 0.33 0.00 36.78 4.34
155 156 7.335673 TGTTGAAATATGTGTATGTACAGGGTG 59.664 37.037 0.33 0.00 36.78 4.61
156 157 6.953101 TGAAATATGTGTATGTACAGGGTGT 58.047 36.000 0.33 0.00 36.78 4.16
157 158 8.080363 TGAAATATGTGTATGTACAGGGTGTA 57.920 34.615 0.33 0.00 36.78 2.90
158 159 8.201464 TGAAATATGTGTATGTACAGGGTGTAG 58.799 37.037 0.33 0.00 36.78 2.74
159 160 7.670605 AATATGTGTATGTACAGGGTGTAGT 57.329 36.000 0.33 0.00 36.78 2.73
160 161 5.593679 ATGTGTATGTACAGGGTGTAGTC 57.406 43.478 0.33 0.00 36.78 2.59
161 162 3.765511 TGTGTATGTACAGGGTGTAGTCC 59.234 47.826 0.33 0.00 36.78 3.85
162 163 4.021916 GTGTATGTACAGGGTGTAGTCCT 58.978 47.826 0.33 0.00 36.78 3.85
163 164 4.465305 GTGTATGTACAGGGTGTAGTCCTT 59.535 45.833 0.33 0.00 36.78 3.36
164 165 5.046807 GTGTATGTACAGGGTGTAGTCCTTT 60.047 44.000 0.33 0.00 36.78 3.11
165 166 5.544948 TGTATGTACAGGGTGTAGTCCTTTT 59.455 40.000 0.33 0.00 32.84 2.27
166 167 5.578157 ATGTACAGGGTGTAGTCCTTTTT 57.422 39.130 0.33 0.00 32.84 1.94
167 168 4.710324 TGTACAGGGTGTAGTCCTTTTTG 58.290 43.478 0.00 0.00 32.84 2.44
168 169 3.945640 ACAGGGTGTAGTCCTTTTTGT 57.054 42.857 0.00 0.00 31.06 2.83
169 170 3.551846 ACAGGGTGTAGTCCTTTTTGTG 58.448 45.455 0.00 0.00 31.06 3.33
170 171 2.293399 CAGGGTGTAGTCCTTTTTGTGC 59.707 50.000 0.00 0.00 31.06 4.57
171 172 1.265905 GGGTGTAGTCCTTTTTGTGCG 59.734 52.381 0.00 0.00 0.00 5.34
172 173 1.334689 GGTGTAGTCCTTTTTGTGCGC 60.335 52.381 0.00 0.00 0.00 6.09
173 174 1.332375 GTGTAGTCCTTTTTGTGCGCA 59.668 47.619 5.66 5.66 0.00 6.09
174 175 2.017782 TGTAGTCCTTTTTGTGCGCAA 58.982 42.857 14.00 9.01 0.00 4.85
175 176 2.223386 TGTAGTCCTTTTTGTGCGCAAC 60.223 45.455 14.00 7.43 33.82 4.17
176 177 1.102978 AGTCCTTTTTGTGCGCAACT 58.897 45.000 14.00 6.45 33.82 3.16
177 178 2.294074 AGTCCTTTTTGTGCGCAACTA 58.706 42.857 14.00 0.00 33.82 2.24
178 179 2.032924 AGTCCTTTTTGTGCGCAACTAC 59.967 45.455 14.00 0.00 33.82 2.73
179 180 2.017782 TCCTTTTTGTGCGCAACTACA 58.982 42.857 14.00 1.99 33.82 2.74
180 181 2.032799 TCCTTTTTGTGCGCAACTACAG 59.967 45.455 14.00 5.87 33.82 2.74
181 182 2.384382 CTTTTTGTGCGCAACTACAGG 58.616 47.619 14.00 0.00 33.82 4.00
182 183 0.665835 TTTTGTGCGCAACTACAGGG 59.334 50.000 14.00 0.00 33.82 4.45
183 184 0.464735 TTTGTGCGCAACTACAGGGT 60.465 50.000 14.00 0.00 33.82 4.34
184 185 1.163420 TTGTGCGCAACTACAGGGTG 61.163 55.000 14.00 0.00 35.33 4.61
185 186 1.597027 GTGCGCAACTACAGGGTGT 60.597 57.895 14.00 0.00 34.56 4.16
186 187 0.320073 GTGCGCAACTACAGGGTGTA 60.320 55.000 14.00 0.00 34.56 2.90
193 194 1.522569 CTACAGGGTGTAGGGCTGC 59.477 63.158 6.24 0.00 44.90 5.25
194 195 1.229368 TACAGGGTGTAGGGCTGCA 60.229 57.895 0.50 0.00 0.00 4.41
195 196 1.264749 TACAGGGTGTAGGGCTGCAG 61.265 60.000 10.11 10.11 0.00 4.41
196 197 2.203998 AGGGTGTAGGGCTGCAGT 60.204 61.111 16.64 0.00 0.00 4.40
197 198 1.080354 AGGGTGTAGGGCTGCAGTA 59.920 57.895 16.64 0.00 0.00 2.74
198 199 0.326618 AGGGTGTAGGGCTGCAGTAT 60.327 55.000 16.64 4.11 0.00 2.12
199 200 0.106894 GGGTGTAGGGCTGCAGTATC 59.893 60.000 16.64 5.47 0.00 2.24
200 201 1.123928 GGTGTAGGGCTGCAGTATCT 58.876 55.000 16.64 12.48 0.00 1.98
201 202 1.202580 GGTGTAGGGCTGCAGTATCTG 60.203 57.143 16.64 0.00 34.12 2.90
202 203 1.482593 GTGTAGGGCTGCAGTATCTGT 59.517 52.381 16.64 0.00 33.43 3.41
203 204 2.693591 GTGTAGGGCTGCAGTATCTGTA 59.306 50.000 16.64 2.11 33.43 2.74
204 205 2.693591 TGTAGGGCTGCAGTATCTGTAC 59.306 50.000 16.64 9.22 33.43 2.90
205 206 1.866015 AGGGCTGCAGTATCTGTACA 58.134 50.000 16.64 0.00 33.43 2.90
206 207 2.402564 AGGGCTGCAGTATCTGTACAT 58.597 47.619 16.64 0.00 33.43 2.29
207 208 2.103771 AGGGCTGCAGTATCTGTACATG 59.896 50.000 16.64 0.00 33.43 3.21
208 209 1.869767 GGCTGCAGTATCTGTACATGC 59.130 52.381 16.64 10.74 36.43 4.06
209 210 1.524355 GCTGCAGTATCTGTACATGCG 59.476 52.381 16.64 8.97 37.57 4.73
210 211 2.799562 GCTGCAGTATCTGTACATGCGA 60.800 50.000 16.64 0.31 37.57 5.10
211 212 3.646946 CTGCAGTATCTGTACATGCGAT 58.353 45.455 5.25 7.43 37.57 4.58
212 213 4.053983 CTGCAGTATCTGTACATGCGATT 58.946 43.478 5.25 0.00 37.57 3.34
213 214 4.051237 TGCAGTATCTGTACATGCGATTC 58.949 43.478 12.41 3.72 37.57 2.52
214 215 4.202151 TGCAGTATCTGTACATGCGATTCT 60.202 41.667 12.41 5.66 37.57 2.40
215 216 4.149571 GCAGTATCTGTACATGCGATTCTG 59.850 45.833 18.22 18.22 36.35 3.02
216 217 5.284864 CAGTATCTGTACATGCGATTCTGT 58.715 41.667 15.97 0.00 31.80 3.41
217 218 6.438763 CAGTATCTGTACATGCGATTCTGTA 58.561 40.000 15.97 0.00 31.80 2.74
218 219 6.918022 CAGTATCTGTACATGCGATTCTGTAA 59.082 38.462 15.97 0.00 31.80 2.41
219 220 7.596621 CAGTATCTGTACATGCGATTCTGTAAT 59.403 37.037 15.97 0.00 31.80 1.89
220 221 8.144478 AGTATCTGTACATGCGATTCTGTAATT 58.856 33.333 0.00 0.00 33.09 1.40
221 222 9.406828 GTATCTGTACATGCGATTCTGTAATTA 57.593 33.333 0.00 0.00 30.14 1.40
222 223 7.930513 TCTGTACATGCGATTCTGTAATTAG 57.069 36.000 0.00 0.00 30.14 1.73
223 224 7.489160 TCTGTACATGCGATTCTGTAATTAGT 58.511 34.615 0.00 0.00 30.14 2.24
224 225 7.979537 TCTGTACATGCGATTCTGTAATTAGTT 59.020 33.333 0.00 0.00 30.14 2.24
225 226 8.487313 TGTACATGCGATTCTGTAATTAGTTT 57.513 30.769 0.00 0.00 30.14 2.66
226 227 8.941977 TGTACATGCGATTCTGTAATTAGTTTT 58.058 29.630 0.00 0.00 30.14 2.43
227 228 9.769093 GTACATGCGATTCTGTAATTAGTTTTT 57.231 29.630 0.00 0.00 30.14 1.94
250 251 6.385649 TTTTAGAAAACTCGCCATCTTTGT 57.614 33.333 0.00 0.00 0.00 2.83
251 252 6.385649 TTTAGAAAACTCGCCATCTTTGTT 57.614 33.333 0.00 0.00 0.00 2.83
252 253 4.228912 AGAAAACTCGCCATCTTTGTTG 57.771 40.909 0.00 0.00 0.00 3.33
253 254 3.882888 AGAAAACTCGCCATCTTTGTTGA 59.117 39.130 0.00 0.00 0.00 3.18
254 255 4.520492 AGAAAACTCGCCATCTTTGTTGAT 59.480 37.500 0.00 0.00 0.00 2.57
255 256 4.853924 AAACTCGCCATCTTTGTTGATT 57.146 36.364 0.00 0.00 0.00 2.57
256 257 4.853924 AACTCGCCATCTTTGTTGATTT 57.146 36.364 0.00 0.00 0.00 2.17
257 258 4.164822 ACTCGCCATCTTTGTTGATTTG 57.835 40.909 0.00 0.00 0.00 2.32
258 259 2.919229 CTCGCCATCTTTGTTGATTTGC 59.081 45.455 0.00 0.00 0.00 3.68
259 260 2.295629 TCGCCATCTTTGTTGATTTGCA 59.704 40.909 0.00 0.00 0.00 4.08
260 261 3.058450 CGCCATCTTTGTTGATTTGCAA 58.942 40.909 0.00 0.00 0.00 4.08
276 277 9.708092 TTGATTTGCAACAATTTGATAATCAGA 57.292 25.926 0.00 0.00 40.85 3.27
277 278 9.878667 TGATTTGCAACAATTTGATAATCAGAT 57.121 25.926 0.00 0.00 38.17 2.90
287 288 8.688184 CAATTTGATAATCAGATTGTTCATCGC 58.312 33.333 5.85 0.00 41.38 4.58
288 289 6.923928 TTGATAATCAGATTGTTCATCGCA 57.076 33.333 5.85 0.00 36.93 5.10
289 290 6.923928 TGATAATCAGATTGTTCATCGCAA 57.076 33.333 5.85 0.00 36.93 4.85
290 291 7.319142 TGATAATCAGATTGTTCATCGCAAA 57.681 32.000 5.85 0.00 36.93 3.68
291 292 7.760437 TGATAATCAGATTGTTCATCGCAAAA 58.240 30.769 5.85 0.00 36.93 2.44
292 293 8.242739 TGATAATCAGATTGTTCATCGCAAAAA 58.757 29.630 5.85 0.00 36.93 1.94
293 294 6.695292 AATCAGATTGTTCATCGCAAAAAC 57.305 33.333 0.00 0.00 36.93 2.43
294 295 4.545610 TCAGATTGTTCATCGCAAAAACC 58.454 39.130 0.00 0.00 36.93 3.27
295 296 4.037327 TCAGATTGTTCATCGCAAAAACCA 59.963 37.500 0.00 0.00 36.93 3.67
296 297 4.744137 CAGATTGTTCATCGCAAAAACCAA 59.256 37.500 0.00 0.00 36.93 3.67
297 298 5.233902 CAGATTGTTCATCGCAAAAACCAAA 59.766 36.000 0.00 0.00 36.93 3.28
298 299 5.814705 AGATTGTTCATCGCAAAAACCAAAA 59.185 32.000 0.00 0.00 36.93 2.44
299 300 5.862924 TTGTTCATCGCAAAAACCAAAAA 57.137 30.435 0.00 0.00 0.00 1.94
334 335 9.516314 AAAAAGTAAAAGATTGTTGTAGACTGC 57.484 29.630 0.00 0.00 0.00 4.40
335 336 7.801716 AAGTAAAAGATTGTTGTAGACTGCA 57.198 32.000 0.00 0.00 0.00 4.41
336 337 7.986085 AGTAAAAGATTGTTGTAGACTGCAT 57.014 32.000 0.00 0.00 0.00 3.96
337 338 9.502091 AAGTAAAAGATTGTTGTAGACTGCATA 57.498 29.630 0.00 0.00 0.00 3.14
338 339 9.672673 AGTAAAAGATTGTTGTAGACTGCATAT 57.327 29.630 0.00 0.00 0.00 1.78
339 340 9.922305 GTAAAAGATTGTTGTAGACTGCATATC 57.078 33.333 0.00 0.00 0.00 1.63
340 341 8.565896 AAAAGATTGTTGTAGACTGCATATCA 57.434 30.769 0.00 0.00 0.00 2.15
341 342 8.565896 AAAGATTGTTGTAGACTGCATATCAA 57.434 30.769 0.00 2.08 0.00 2.57
342 343 7.783090 AGATTGTTGTAGACTGCATATCAAG 57.217 36.000 0.00 0.00 0.00 3.02
343 344 7.334090 AGATTGTTGTAGACTGCATATCAAGT 58.666 34.615 0.00 0.00 0.00 3.16
344 345 7.826252 AGATTGTTGTAGACTGCATATCAAGTT 59.174 33.333 0.00 0.00 0.00 2.66
345 346 6.726258 TGTTGTAGACTGCATATCAAGTTG 57.274 37.500 0.00 0.00 0.00 3.16
346 347 5.122239 TGTTGTAGACTGCATATCAAGTTGC 59.878 40.000 0.00 0.00 39.33 4.17
347 348 4.191544 TGTAGACTGCATATCAAGTTGCC 58.808 43.478 0.00 0.00 38.08 4.52
348 349 3.354948 AGACTGCATATCAAGTTGCCA 57.645 42.857 0.00 0.00 38.08 4.92
349 350 3.689347 AGACTGCATATCAAGTTGCCAA 58.311 40.909 0.00 0.00 38.08 4.52
350 351 3.441572 AGACTGCATATCAAGTTGCCAAC 59.558 43.478 0.00 0.00 38.08 3.77
351 352 2.493278 ACTGCATATCAAGTTGCCAACC 59.507 45.455 3.45 0.00 38.08 3.77
352 353 2.492881 CTGCATATCAAGTTGCCAACCA 59.507 45.455 3.45 0.00 38.08 3.67
353 354 2.230992 TGCATATCAAGTTGCCAACCAC 59.769 45.455 3.45 0.00 38.08 4.16
354 355 2.493278 GCATATCAAGTTGCCAACCACT 59.507 45.455 3.45 0.00 32.66 4.00
355 356 3.694072 GCATATCAAGTTGCCAACCACTA 59.306 43.478 3.45 0.00 32.66 2.74
356 357 4.201950 GCATATCAAGTTGCCAACCACTAG 60.202 45.833 3.45 0.00 32.66 2.57
357 358 3.508845 ATCAAGTTGCCAACCACTAGT 57.491 42.857 3.45 0.00 0.00 2.57
358 359 2.571212 TCAAGTTGCCAACCACTAGTG 58.429 47.619 16.34 16.34 0.00 2.74
359 360 2.171659 TCAAGTTGCCAACCACTAGTGA 59.828 45.455 24.68 0.00 0.00 3.41
360 361 2.948979 CAAGTTGCCAACCACTAGTGAA 59.051 45.455 24.68 6.39 0.00 3.18
361 362 2.572290 AGTTGCCAACCACTAGTGAAC 58.428 47.619 24.68 17.66 0.00 3.18
362 363 1.607148 GTTGCCAACCACTAGTGAACC 59.393 52.381 24.68 8.02 0.00 3.62
363 364 0.109723 TGCCAACCACTAGTGAACCC 59.890 55.000 24.68 8.69 0.00 4.11
364 365 0.109723 GCCAACCACTAGTGAACCCA 59.890 55.000 24.68 0.00 0.00 4.51
365 366 1.892209 CCAACCACTAGTGAACCCAC 58.108 55.000 24.68 0.00 43.50 4.61
366 367 1.544759 CCAACCACTAGTGAACCCACC 60.545 57.143 24.68 0.00 44.22 4.61
367 368 1.420138 CAACCACTAGTGAACCCACCT 59.580 52.381 24.68 0.00 44.22 4.00
368 369 1.056660 ACCACTAGTGAACCCACCTG 58.943 55.000 24.68 6.45 44.22 4.00
369 370 1.056660 CCACTAGTGAACCCACCTGT 58.943 55.000 24.68 0.00 44.22 4.00
370 371 1.420138 CCACTAGTGAACCCACCTGTT 59.580 52.381 24.68 0.00 44.22 3.16
371 372 2.635915 CCACTAGTGAACCCACCTGTTA 59.364 50.000 24.68 0.00 44.22 2.41
372 373 3.263425 CCACTAGTGAACCCACCTGTTAT 59.737 47.826 24.68 0.00 44.22 1.89
373 374 4.263331 CCACTAGTGAACCCACCTGTTATT 60.263 45.833 24.68 0.00 44.22 1.40
374 375 4.695455 CACTAGTGAACCCACCTGTTATTG 59.305 45.833 18.45 0.00 44.22 1.90
375 376 4.595781 ACTAGTGAACCCACCTGTTATTGA 59.404 41.667 0.00 0.00 44.22 2.57
376 377 4.447138 AGTGAACCCACCTGTTATTGAA 57.553 40.909 0.00 0.00 44.22 2.69
377 378 4.998051 AGTGAACCCACCTGTTATTGAAT 58.002 39.130 0.00 0.00 44.22 2.57
378 379 4.766891 AGTGAACCCACCTGTTATTGAATG 59.233 41.667 0.00 0.00 44.22 2.67
379 380 4.764823 GTGAACCCACCTGTTATTGAATGA 59.235 41.667 0.00 0.00 37.33 2.57
380 381 5.418840 GTGAACCCACCTGTTATTGAATGAT 59.581 40.000 0.00 0.00 37.33 2.45
381 382 6.015918 TGAACCCACCTGTTATTGAATGATT 58.984 36.000 0.00 0.00 0.00 2.57
382 383 7.122055 GTGAACCCACCTGTTATTGAATGATTA 59.878 37.037 0.00 0.00 37.33 1.75
383 384 7.339212 TGAACCCACCTGTTATTGAATGATTAG 59.661 37.037 0.00 0.00 0.00 1.73
384 385 6.969043 ACCCACCTGTTATTGAATGATTAGA 58.031 36.000 0.00 0.00 0.00 2.10
385 386 7.410174 ACCCACCTGTTATTGAATGATTAGAA 58.590 34.615 0.00 0.00 0.00 2.10
386 387 7.557719 ACCCACCTGTTATTGAATGATTAGAAG 59.442 37.037 0.00 0.00 0.00 2.85
387 388 7.775093 CCCACCTGTTATTGAATGATTAGAAGA 59.225 37.037 0.00 0.00 0.00 2.87
388 389 9.177608 CCACCTGTTATTGAATGATTAGAAGAA 57.822 33.333 0.00 0.00 0.00 2.52
389 390 9.994432 CACCTGTTATTGAATGATTAGAAGAAC 57.006 33.333 0.00 1.88 0.00 3.01
390 391 9.739276 ACCTGTTATTGAATGATTAGAAGAACA 57.261 29.630 8.44 8.44 30.96 3.18
394 395 9.994432 GTTATTGAATGATTAGAAGAACAGTGG 57.006 33.333 0.00 0.00 0.00 4.00
395 396 9.739276 TTATTGAATGATTAGAAGAACAGTGGT 57.261 29.630 0.00 0.00 0.00 4.16
397 398 9.911788 ATTGAATGATTAGAAGAACAGTGGTAT 57.088 29.630 0.00 0.00 0.00 2.73
398 399 8.948631 TGAATGATTAGAAGAACAGTGGTATC 57.051 34.615 0.00 0.00 0.00 2.24
399 400 7.987458 TGAATGATTAGAAGAACAGTGGTATCC 59.013 37.037 0.00 0.00 0.00 2.59
400 401 6.235231 TGATTAGAAGAACAGTGGTATCCC 57.765 41.667 0.00 0.00 0.00 3.85
401 402 5.724370 TGATTAGAAGAACAGTGGTATCCCA 59.276 40.000 0.00 0.00 38.87 4.37
402 403 5.677319 TTAGAAGAACAGTGGTATCCCAG 57.323 43.478 0.00 0.00 42.94 4.45
403 404 2.237392 AGAAGAACAGTGGTATCCCAGC 59.763 50.000 0.00 0.00 42.94 4.85
404 405 0.912486 AGAACAGTGGTATCCCAGCC 59.088 55.000 0.00 0.00 42.94 4.85
405 406 0.912486 GAACAGTGGTATCCCAGCCT 59.088 55.000 0.00 0.00 42.94 4.58
406 407 0.620556 AACAGTGGTATCCCAGCCTG 59.379 55.000 0.00 0.00 42.94 4.85
407 408 0.547712 ACAGTGGTATCCCAGCCTGT 60.548 55.000 0.00 0.00 42.94 4.00
408 409 0.179000 CAGTGGTATCCCAGCCTGTC 59.821 60.000 0.00 0.00 42.94 3.51
409 410 1.144057 GTGGTATCCCAGCCTGTCG 59.856 63.158 0.00 0.00 42.94 4.35
410 411 2.063979 TGGTATCCCAGCCTGTCGG 61.064 63.158 0.00 0.00 35.17 4.79
411 412 2.808206 GGTATCCCAGCCTGTCGGG 61.808 68.421 0.00 0.00 44.60 5.14
415 416 4.410400 CCCAGCCTGTCGGGGTTC 62.410 72.222 0.00 0.00 44.41 3.62
416 417 3.636231 CCAGCCTGTCGGGGTTCA 61.636 66.667 0.00 0.00 44.41 3.18
417 418 2.429930 CAGCCTGTCGGGGTTCAA 59.570 61.111 0.00 0.00 44.41 2.69
418 419 1.672356 CAGCCTGTCGGGGTTCAAG 60.672 63.158 0.00 0.00 44.41 3.02
419 420 2.147387 AGCCTGTCGGGGTTCAAGT 61.147 57.895 0.00 0.00 44.41 3.16
420 421 1.671379 GCCTGTCGGGGTTCAAGTC 60.671 63.158 0.00 0.00 35.12 3.01
421 422 1.003718 CCTGTCGGGGTTCAAGTCC 60.004 63.158 0.00 0.00 0.00 3.85
422 423 1.481056 CCTGTCGGGGTTCAAGTCCT 61.481 60.000 0.00 0.00 0.00 3.85
423 424 1.263356 CTGTCGGGGTTCAAGTCCTA 58.737 55.000 0.00 0.00 0.00 2.94
424 425 1.204941 CTGTCGGGGTTCAAGTCCTAG 59.795 57.143 0.00 0.00 0.00 3.02
425 426 1.203087 TGTCGGGGTTCAAGTCCTAGA 60.203 52.381 0.00 0.00 0.00 2.43
426 427 1.477295 GTCGGGGTTCAAGTCCTAGAG 59.523 57.143 0.00 0.00 0.00 2.43
427 428 1.076677 TCGGGGTTCAAGTCCTAGAGT 59.923 52.381 0.00 0.00 0.00 3.24
428 429 1.900486 CGGGGTTCAAGTCCTAGAGTT 59.100 52.381 0.00 0.00 0.00 3.01
429 430 2.353803 CGGGGTTCAAGTCCTAGAGTTG 60.354 54.545 5.92 5.92 42.42 3.16
430 431 2.615747 GGGGTTCAAGTCCTAGAGTTGC 60.616 54.545 7.20 0.00 41.27 4.17
431 432 2.615747 GGGTTCAAGTCCTAGAGTTGCC 60.616 54.545 7.20 4.39 41.27 4.52
432 433 2.038557 GGTTCAAGTCCTAGAGTTGCCA 59.961 50.000 7.20 0.00 41.27 4.92
433 434 3.496160 GGTTCAAGTCCTAGAGTTGCCAA 60.496 47.826 7.20 0.00 41.27 4.52
434 435 4.327680 GTTCAAGTCCTAGAGTTGCCAAT 58.672 43.478 7.20 0.00 41.27 3.16
435 436 3.942829 TCAAGTCCTAGAGTTGCCAATG 58.057 45.455 7.20 0.00 41.27 2.82
436 437 3.012518 CAAGTCCTAGAGTTGCCAATGG 58.987 50.000 0.00 0.00 36.41 3.16
446 447 2.887360 GCCAATGGCGCTCACATT 59.113 55.556 9.14 5.89 39.62 2.71
447 448 1.216178 GCCAATGGCGCTCACATTT 59.784 52.632 9.14 0.00 39.62 2.32
448 449 0.390209 GCCAATGGCGCTCACATTTT 60.390 50.000 9.14 0.00 39.62 1.82
449 450 1.940752 GCCAATGGCGCTCACATTTTT 60.941 47.619 9.14 0.00 39.62 1.94
450 451 2.673610 GCCAATGGCGCTCACATTTTTA 60.674 45.455 9.14 0.00 39.62 1.52
451 452 3.784338 CCAATGGCGCTCACATTTTTAT 58.216 40.909 7.64 0.00 36.47 1.40
452 453 4.736168 GCCAATGGCGCTCACATTTTTATA 60.736 41.667 9.14 0.00 39.62 0.98
453 454 4.977963 CCAATGGCGCTCACATTTTTATAG 59.022 41.667 7.64 0.00 36.47 1.31
454 455 5.221028 CCAATGGCGCTCACATTTTTATAGA 60.221 40.000 7.64 0.00 36.47 1.98
455 456 6.441274 CAATGGCGCTCACATTTTTATAGAT 58.559 36.000 7.64 0.00 36.47 1.98
456 457 6.639632 ATGGCGCTCACATTTTTATAGATT 57.360 33.333 7.64 0.00 0.00 2.40
457 458 6.449635 TGGCGCTCACATTTTTATAGATTT 57.550 33.333 7.64 0.00 0.00 2.17
458 459 7.561021 TGGCGCTCACATTTTTATAGATTTA 57.439 32.000 7.64 0.00 0.00 1.40
459 460 8.165239 TGGCGCTCACATTTTTATAGATTTAT 57.835 30.769 7.64 0.00 0.00 1.40
460 461 8.629158 TGGCGCTCACATTTTTATAGATTTATT 58.371 29.630 7.64 0.00 0.00 1.40
461 462 9.463443 GGCGCTCACATTTTTATAGATTTATTT 57.537 29.630 7.64 0.00 0.00 1.40
471 472 8.706322 TTTTATAGATTTATTTCAGGCCTCCC 57.294 34.615 0.00 0.00 0.00 4.30
472 473 3.214696 AGATTTATTTCAGGCCTCCCG 57.785 47.619 0.00 0.00 35.76 5.14
473 474 2.777692 AGATTTATTTCAGGCCTCCCGA 59.222 45.455 0.00 0.00 35.76 5.14
474 475 3.395941 AGATTTATTTCAGGCCTCCCGAT 59.604 43.478 0.00 0.00 35.76 4.18
475 476 2.638480 TTATTTCAGGCCTCCCGATG 57.362 50.000 0.00 0.00 35.76 3.84
476 477 1.801242 TATTTCAGGCCTCCCGATGA 58.199 50.000 0.00 0.00 35.76 2.92
477 478 1.143813 ATTTCAGGCCTCCCGATGAT 58.856 50.000 0.00 0.00 35.76 2.45
478 479 0.181114 TTTCAGGCCTCCCGATGATG 59.819 55.000 0.00 0.00 35.76 3.07
479 480 0.690744 TTCAGGCCTCCCGATGATGA 60.691 55.000 0.00 0.00 35.76 2.92
480 481 1.117749 TCAGGCCTCCCGATGATGAG 61.118 60.000 0.00 0.00 35.76 2.90
481 482 2.031768 GGCCTCCCGATGATGAGC 59.968 66.667 0.00 0.00 0.00 4.26
482 483 2.515071 GGCCTCCCGATGATGAGCT 61.515 63.158 0.00 0.00 0.00 4.09
483 484 1.449353 GCCTCCCGATGATGAGCTT 59.551 57.895 0.00 0.00 0.00 3.74
484 485 0.179034 GCCTCCCGATGATGAGCTTT 60.179 55.000 0.00 0.00 0.00 3.51
485 486 1.876322 CCTCCCGATGATGAGCTTTC 58.124 55.000 0.00 0.00 0.00 2.62
486 487 1.139654 CCTCCCGATGATGAGCTTTCA 59.860 52.381 3.13 3.13 0.00 2.69
487 488 2.481854 CTCCCGATGATGAGCTTTCAG 58.518 52.381 6.48 0.00 0.00 3.02
488 489 1.833630 TCCCGATGATGAGCTTTCAGT 59.166 47.619 6.48 0.00 0.00 3.41
489 490 1.938577 CCCGATGATGAGCTTTCAGTG 59.061 52.381 6.48 0.00 0.00 3.66
490 491 1.938577 CCGATGATGAGCTTTCAGTGG 59.061 52.381 6.48 6.52 0.00 4.00
491 492 1.938577 CGATGATGAGCTTTCAGTGGG 59.061 52.381 6.48 0.00 0.00 4.61
492 493 2.679059 CGATGATGAGCTTTCAGTGGGT 60.679 50.000 6.48 0.00 0.00 4.51
493 494 3.430790 CGATGATGAGCTTTCAGTGGGTA 60.431 47.826 6.48 0.00 0.00 3.69
494 495 3.616956 TGATGAGCTTTCAGTGGGTAG 57.383 47.619 0.00 0.00 0.00 3.18
495 496 2.237143 TGATGAGCTTTCAGTGGGTAGG 59.763 50.000 0.00 0.00 0.00 3.18
496 497 0.984230 TGAGCTTTCAGTGGGTAGGG 59.016 55.000 0.00 0.00 0.00 3.53
497 498 0.984995 GAGCTTTCAGTGGGTAGGGT 59.015 55.000 0.00 0.00 0.00 4.34
498 499 0.693049 AGCTTTCAGTGGGTAGGGTG 59.307 55.000 0.00 0.00 0.00 4.61
499 500 0.400594 GCTTTCAGTGGGTAGGGTGT 59.599 55.000 0.00 0.00 0.00 4.16
500 501 1.882352 GCTTTCAGTGGGTAGGGTGTG 60.882 57.143 0.00 0.00 0.00 3.82
501 502 0.109723 TTTCAGTGGGTAGGGTGTGC 59.890 55.000 0.00 0.00 0.00 4.57
502 503 2.047274 CAGTGGGTAGGGTGTGCG 60.047 66.667 0.00 0.00 0.00 5.34
503 504 2.525877 AGTGGGTAGGGTGTGCGT 60.526 61.111 0.00 0.00 0.00 5.24
504 505 2.358247 GTGGGTAGGGTGTGCGTG 60.358 66.667 0.00 0.00 0.00 5.34
505 506 2.845317 TGGGTAGGGTGTGCGTGT 60.845 61.111 0.00 0.00 0.00 4.49
506 507 1.533513 TGGGTAGGGTGTGCGTGTA 60.534 57.895 0.00 0.00 0.00 2.90
507 508 0.905809 TGGGTAGGGTGTGCGTGTAT 60.906 55.000 0.00 0.00 0.00 2.29
508 509 0.461339 GGGTAGGGTGTGCGTGTATG 60.461 60.000 0.00 0.00 0.00 2.39
509 510 0.248289 GGTAGGGTGTGCGTGTATGT 59.752 55.000 0.00 0.00 0.00 2.29
510 511 1.477700 GGTAGGGTGTGCGTGTATGTA 59.522 52.381 0.00 0.00 0.00 2.29
511 512 2.101917 GGTAGGGTGTGCGTGTATGTAT 59.898 50.000 0.00 0.00 0.00 2.29
512 513 3.431207 GGTAGGGTGTGCGTGTATGTATT 60.431 47.826 0.00 0.00 0.00 1.89
513 514 2.901249 AGGGTGTGCGTGTATGTATTC 58.099 47.619 0.00 0.00 0.00 1.75
514 515 2.235155 AGGGTGTGCGTGTATGTATTCA 59.765 45.455 0.00 0.00 0.00 2.57
515 516 3.118408 AGGGTGTGCGTGTATGTATTCAT 60.118 43.478 0.00 0.00 38.00 2.57
516 517 4.100344 AGGGTGTGCGTGTATGTATTCATA 59.900 41.667 0.00 0.00 35.70 2.15
517 518 4.812091 GGGTGTGCGTGTATGTATTCATAA 59.188 41.667 0.00 0.00 38.13 1.90
518 519 5.050363 GGGTGTGCGTGTATGTATTCATAAG 60.050 44.000 0.00 0.00 38.13 1.73
519 520 5.050363 GGTGTGCGTGTATGTATTCATAAGG 60.050 44.000 0.00 0.00 38.13 2.69
520 521 5.050363 GTGTGCGTGTATGTATTCATAAGGG 60.050 44.000 0.00 0.00 38.13 3.95
521 522 5.054477 GTGCGTGTATGTATTCATAAGGGT 58.946 41.667 0.00 0.00 38.13 4.34
522 523 5.050363 GTGCGTGTATGTATTCATAAGGGTG 60.050 44.000 0.00 0.00 38.13 4.61
523 524 5.163395 TGCGTGTATGTATTCATAAGGGTGA 60.163 40.000 0.00 0.00 38.13 4.02
524 525 5.405571 GCGTGTATGTATTCATAAGGGTGAG 59.594 44.000 0.00 0.00 38.13 3.51
525 526 6.513180 CGTGTATGTATTCATAAGGGTGAGT 58.487 40.000 0.00 0.00 38.13 3.41
526 527 6.420903 CGTGTATGTATTCATAAGGGTGAGTG 59.579 42.308 0.00 0.00 38.13 3.51
527 528 7.272978 GTGTATGTATTCATAAGGGTGAGTGT 58.727 38.462 0.00 0.00 38.13 3.55
528 529 8.418662 GTGTATGTATTCATAAGGGTGAGTGTA 58.581 37.037 0.00 0.00 38.13 2.90
529 530 9.154632 TGTATGTATTCATAAGGGTGAGTGTAT 57.845 33.333 0.00 0.00 38.13 2.29
533 534 9.154632 TGTATTCATAAGGGTGAGTGTATATGT 57.845 33.333 0.00 0.00 0.00 2.29
555 556 8.890124 ATGTATATATATGAGCGTCTACGTCT 57.110 34.615 5.44 2.04 42.22 4.18
556 557 8.128016 TGTATATATATGAGCGTCTACGTCTG 57.872 38.462 5.44 0.00 42.22 3.51
557 558 7.763071 TGTATATATATGAGCGTCTACGTCTGT 59.237 37.037 5.44 0.00 42.22 3.41
558 559 9.242477 GTATATATATGAGCGTCTACGTCTGTA 57.758 37.037 5.44 0.00 42.22 2.74
559 560 4.728917 ATATGAGCGTCTACGTCTGTAC 57.271 45.455 4.24 0.00 42.22 2.90
560 561 2.090400 TGAGCGTCTACGTCTGTACT 57.910 50.000 4.24 0.00 42.22 2.73
561 562 1.730612 TGAGCGTCTACGTCTGTACTG 59.269 52.381 4.24 0.00 42.22 2.74
562 563 1.731160 GAGCGTCTACGTCTGTACTGT 59.269 52.381 4.24 0.00 42.22 3.55
563 564 1.463831 AGCGTCTACGTCTGTACTGTG 59.536 52.381 4.24 0.00 42.22 3.66
564 565 1.196354 GCGTCTACGTCTGTACTGTGT 59.804 52.381 4.24 0.38 42.22 3.72
565 566 2.350197 GCGTCTACGTCTGTACTGTGTT 60.350 50.000 4.24 0.00 42.22 3.32
566 567 3.120546 GCGTCTACGTCTGTACTGTGTTA 60.121 47.826 4.24 0.00 42.22 2.41
567 568 4.611355 GCGTCTACGTCTGTACTGTGTTAA 60.611 45.833 4.24 0.00 42.22 2.01
568 569 5.443261 CGTCTACGTCTGTACTGTGTTAAA 58.557 41.667 0.00 0.00 34.11 1.52
650 652 2.730069 CGAATTGTGCTCAGTTTTGCA 58.270 42.857 0.00 0.00 36.79 4.08
1322 1324 2.799017 AGAGCATGAAGAATGGTTGCA 58.201 42.857 0.00 0.00 46.95 4.08
1363 1365 3.680786 CCACACCACGAGCTCCGA 61.681 66.667 8.47 0.00 41.76 4.55
2183 2201 1.609794 GGGACTCGAACCCAGGACT 60.610 63.158 18.78 0.00 46.05 3.85
2279 2297 8.013667 AGGGAAAGAAGGTATACATAGTGAGAT 58.986 37.037 5.01 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 9.773328 CCTGTACATACACATATTTCAACAAAG 57.227 33.333 0.00 0.00 31.93 2.77
127 128 8.735315 CCCTGTACATACACATATTTCAACAAA 58.265 33.333 0.00 0.00 31.93 2.83
128 129 7.885922 ACCCTGTACATACACATATTTCAACAA 59.114 33.333 0.00 0.00 31.93 2.83
129 130 7.335673 CACCCTGTACATACACATATTTCAACA 59.664 37.037 0.00 0.00 31.93 3.33
130 131 7.335924 ACACCCTGTACATACACATATTTCAAC 59.664 37.037 0.00 0.00 31.93 3.18
131 132 7.398829 ACACCCTGTACATACACATATTTCAA 58.601 34.615 0.00 0.00 31.93 2.69
132 133 6.953101 ACACCCTGTACATACACATATTTCA 58.047 36.000 0.00 0.00 31.93 2.69
133 134 8.202137 ACTACACCCTGTACATACACATATTTC 58.798 37.037 0.00 0.00 31.93 2.17
134 135 8.086143 ACTACACCCTGTACATACACATATTT 57.914 34.615 0.00 0.00 31.93 1.40
135 136 7.201974 GGACTACACCCTGTACATACACATATT 60.202 40.741 0.00 0.00 31.93 1.28
136 137 6.267014 GGACTACACCCTGTACATACACATAT 59.733 42.308 0.00 0.00 31.93 1.78
137 138 5.595542 GGACTACACCCTGTACATACACATA 59.404 44.000 0.00 0.00 31.93 2.29
138 139 4.404715 GGACTACACCCTGTACATACACAT 59.595 45.833 0.00 0.00 31.93 3.21
139 140 3.765511 GGACTACACCCTGTACATACACA 59.234 47.826 0.00 0.00 31.93 3.72
140 141 4.021916 AGGACTACACCCTGTACATACAC 58.978 47.826 0.00 0.00 31.66 2.90
141 142 4.326600 AGGACTACACCCTGTACATACA 57.673 45.455 0.00 0.00 31.66 2.29
142 143 5.672421 AAAGGACTACACCCTGTACATAC 57.328 43.478 0.00 0.00 33.55 2.39
143 144 6.043474 ACAAAAAGGACTACACCCTGTACATA 59.957 38.462 0.00 0.00 33.55 2.29
144 145 5.163131 ACAAAAAGGACTACACCCTGTACAT 60.163 40.000 0.00 0.00 33.55 2.29
145 146 4.164604 ACAAAAAGGACTACACCCTGTACA 59.835 41.667 0.00 0.00 33.55 2.90
146 147 4.514066 CACAAAAAGGACTACACCCTGTAC 59.486 45.833 0.00 0.00 33.55 2.90
147 148 4.710324 CACAAAAAGGACTACACCCTGTA 58.290 43.478 0.00 0.00 33.55 2.74
148 149 3.551846 CACAAAAAGGACTACACCCTGT 58.448 45.455 0.00 0.00 33.55 4.00
149 150 2.293399 GCACAAAAAGGACTACACCCTG 59.707 50.000 0.00 0.00 33.55 4.45
150 151 2.583143 GCACAAAAAGGACTACACCCT 58.417 47.619 0.00 0.00 35.03 4.34
151 152 1.265905 CGCACAAAAAGGACTACACCC 59.734 52.381 0.00 0.00 0.00 4.61
152 153 1.334689 GCGCACAAAAAGGACTACACC 60.335 52.381 0.30 0.00 0.00 4.16
153 154 1.332375 TGCGCACAAAAAGGACTACAC 59.668 47.619 5.66 0.00 0.00 2.90
154 155 1.669604 TGCGCACAAAAAGGACTACA 58.330 45.000 5.66 0.00 0.00 2.74
155 156 2.032924 AGTTGCGCACAAAAAGGACTAC 59.967 45.455 11.12 0.00 37.58 2.73
156 157 2.294074 AGTTGCGCACAAAAAGGACTA 58.706 42.857 11.12 0.00 37.58 2.59
157 158 1.102978 AGTTGCGCACAAAAAGGACT 58.897 45.000 11.12 5.22 37.58 3.85
158 159 2.223386 TGTAGTTGCGCACAAAAAGGAC 60.223 45.455 11.12 2.26 37.58 3.85
159 160 2.017782 TGTAGTTGCGCACAAAAAGGA 58.982 42.857 11.12 0.00 37.58 3.36
160 161 2.384382 CTGTAGTTGCGCACAAAAAGG 58.616 47.619 11.12 0.00 37.58 3.11
161 162 2.384382 CCTGTAGTTGCGCACAAAAAG 58.616 47.619 11.12 5.52 37.58 2.27
162 163 1.066303 CCCTGTAGTTGCGCACAAAAA 59.934 47.619 11.12 0.00 37.58 1.94
163 164 0.665835 CCCTGTAGTTGCGCACAAAA 59.334 50.000 11.12 0.00 37.58 2.44
164 165 0.464735 ACCCTGTAGTTGCGCACAAA 60.465 50.000 11.12 0.00 37.58 2.83
165 166 1.147376 ACCCTGTAGTTGCGCACAA 59.853 52.632 11.12 0.00 0.00 3.33
166 167 1.596752 CACCCTGTAGTTGCGCACA 60.597 57.895 11.12 3.36 0.00 4.57
167 168 0.320073 TACACCCTGTAGTTGCGCAC 60.320 55.000 11.12 5.61 0.00 5.34
168 169 0.037697 CTACACCCTGTAGTTGCGCA 60.038 55.000 5.66 5.66 43.93 6.09
169 170 0.739813 CCTACACCCTGTAGTTGCGC 60.740 60.000 0.00 0.00 46.68 6.09
170 171 0.108329 CCCTACACCCTGTAGTTGCG 60.108 60.000 8.28 0.00 46.68 4.85
171 172 0.392595 GCCCTACACCCTGTAGTTGC 60.393 60.000 8.28 6.93 46.68 4.17
172 173 1.066143 CAGCCCTACACCCTGTAGTTG 60.066 57.143 8.28 1.68 46.68 3.16
173 174 1.276622 CAGCCCTACACCCTGTAGTT 58.723 55.000 8.28 0.00 46.68 2.24
174 175 1.265454 GCAGCCCTACACCCTGTAGT 61.265 60.000 8.28 0.00 46.68 2.73
176 177 1.229368 TGCAGCCCTACACCCTGTA 60.229 57.895 0.00 0.00 0.00 2.74
177 178 2.529136 TGCAGCCCTACACCCTGT 60.529 61.111 0.00 0.00 0.00 4.00
178 179 1.264749 TACTGCAGCCCTACACCCTG 61.265 60.000 15.27 0.00 0.00 4.45
179 180 0.326618 ATACTGCAGCCCTACACCCT 60.327 55.000 15.27 0.00 0.00 4.34
180 181 0.106894 GATACTGCAGCCCTACACCC 59.893 60.000 15.27 0.00 0.00 4.61
181 182 1.123928 AGATACTGCAGCCCTACACC 58.876 55.000 15.27 0.00 0.00 4.16
182 183 1.482593 ACAGATACTGCAGCCCTACAC 59.517 52.381 15.27 0.00 34.37 2.90
183 184 1.866015 ACAGATACTGCAGCCCTACA 58.134 50.000 15.27 0.00 34.37 2.74
184 185 2.693591 TGTACAGATACTGCAGCCCTAC 59.306 50.000 15.27 5.72 34.37 3.18
185 186 3.026707 TGTACAGATACTGCAGCCCTA 57.973 47.619 15.27 0.00 34.37 3.53
186 187 1.866015 TGTACAGATACTGCAGCCCT 58.134 50.000 15.27 5.40 34.37 5.19
187 188 2.487934 CATGTACAGATACTGCAGCCC 58.512 52.381 15.27 2.79 34.37 5.19
188 189 1.869767 GCATGTACAGATACTGCAGCC 59.130 52.381 15.27 3.20 36.38 4.85
189 190 1.524355 CGCATGTACAGATACTGCAGC 59.476 52.381 15.27 0.00 36.25 5.25
190 191 3.084070 TCGCATGTACAGATACTGCAG 57.916 47.619 13.48 13.48 36.25 4.41
191 192 3.733443 ATCGCATGTACAGATACTGCA 57.267 42.857 16.34 6.22 36.25 4.41
192 193 4.149571 CAGAATCGCATGTACAGATACTGC 59.850 45.833 8.09 8.09 34.37 4.40
193 194 5.284864 ACAGAATCGCATGTACAGATACTG 58.715 41.667 0.33 7.07 37.52 2.74
194 195 5.521906 ACAGAATCGCATGTACAGATACT 57.478 39.130 0.33 0.00 32.00 2.12
195 196 7.875316 ATTACAGAATCGCATGTACAGATAC 57.125 36.000 0.33 0.00 31.83 2.24
196 197 9.626045 CTAATTACAGAATCGCATGTACAGATA 57.374 33.333 0.33 0.00 31.83 1.98
197 198 8.144478 ACTAATTACAGAATCGCATGTACAGAT 58.856 33.333 0.33 0.00 31.83 2.90
198 199 7.489160 ACTAATTACAGAATCGCATGTACAGA 58.511 34.615 0.33 0.00 31.83 3.41
199 200 7.700322 ACTAATTACAGAATCGCATGTACAG 57.300 36.000 0.33 0.00 31.83 2.74
200 201 8.487313 AAACTAATTACAGAATCGCATGTACA 57.513 30.769 0.00 0.00 31.83 2.90
201 202 9.769093 AAAAACTAATTACAGAATCGCATGTAC 57.231 29.630 0.00 0.00 31.83 2.90
226 227 6.801575 ACAAAGATGGCGAGTTTTCTAAAAA 58.198 32.000 0.00 0.00 0.00 1.94
227 228 6.385649 ACAAAGATGGCGAGTTTTCTAAAA 57.614 33.333 0.00 0.00 0.00 1.52
228 229 6.038825 TCAACAAAGATGGCGAGTTTTCTAAA 59.961 34.615 0.00 0.00 0.00 1.85
229 230 5.529430 TCAACAAAGATGGCGAGTTTTCTAA 59.471 36.000 0.00 0.00 0.00 2.10
230 231 5.060506 TCAACAAAGATGGCGAGTTTTCTA 58.939 37.500 0.00 0.00 0.00 2.10
231 232 3.882888 TCAACAAAGATGGCGAGTTTTCT 59.117 39.130 0.00 0.00 0.00 2.52
232 233 4.223320 TCAACAAAGATGGCGAGTTTTC 57.777 40.909 0.00 0.00 0.00 2.29
233 234 4.853924 ATCAACAAAGATGGCGAGTTTT 57.146 36.364 0.00 0.00 0.00 2.43
234 235 4.853924 AATCAACAAAGATGGCGAGTTT 57.146 36.364 0.00 0.00 0.00 2.66
235 236 4.549458 CAAATCAACAAAGATGGCGAGTT 58.451 39.130 0.00 0.00 0.00 3.01
236 237 3.612479 GCAAATCAACAAAGATGGCGAGT 60.612 43.478 0.00 0.00 0.00 4.18
237 238 2.919229 GCAAATCAACAAAGATGGCGAG 59.081 45.455 0.00 0.00 0.00 5.03
238 239 2.295629 TGCAAATCAACAAAGATGGCGA 59.704 40.909 0.00 0.00 33.99 5.54
239 240 2.674954 TGCAAATCAACAAAGATGGCG 58.325 42.857 0.00 0.00 33.99 5.69
250 251 9.708092 TCTGATTATCAAATTGTTGCAAATCAA 57.292 25.926 0.00 2.30 40.80 2.57
251 252 9.878667 ATCTGATTATCAAATTGTTGCAAATCA 57.121 25.926 0.00 1.73 40.03 2.57
254 255 9.491675 ACAATCTGATTATCAAATTGTTGCAAA 57.508 25.926 18.04 0.00 34.50 3.68
255 256 9.491675 AACAATCTGATTATCAAATTGTTGCAA 57.508 25.926 28.23 0.00 38.71 4.08
256 257 9.142515 GAACAATCTGATTATCAAATTGTTGCA 57.857 29.630 31.72 0.00 39.77 4.08
257 258 9.142515 TGAACAATCTGATTATCAAATTGTTGC 57.857 29.630 31.72 24.27 39.77 4.17
260 261 9.726232 CGATGAACAATCTGATTATCAAATTGT 57.274 29.630 18.04 18.04 32.61 2.71
261 262 8.688184 GCGATGAACAATCTGATTATCAAATTG 58.312 33.333 16.89 16.89 32.61 2.32
262 263 8.407832 TGCGATGAACAATCTGATTATCAAATT 58.592 29.630 16.93 0.00 32.61 1.82
263 264 7.933396 TGCGATGAACAATCTGATTATCAAAT 58.067 30.769 16.93 6.64 32.61 2.32
264 265 7.319142 TGCGATGAACAATCTGATTATCAAA 57.681 32.000 16.93 6.05 32.61 2.69
265 266 6.923928 TGCGATGAACAATCTGATTATCAA 57.076 33.333 16.93 3.96 32.61 2.57
266 267 6.923928 TTGCGATGAACAATCTGATTATCA 57.076 33.333 15.91 15.91 32.61 2.15
267 268 8.526681 GTTTTTGCGATGAACAATCTGATTATC 58.473 33.333 1.98 5.63 32.61 1.75
268 269 7.489113 GGTTTTTGCGATGAACAATCTGATTAT 59.511 33.333 1.98 0.00 32.61 1.28
269 270 6.806249 GGTTTTTGCGATGAACAATCTGATTA 59.194 34.615 1.98 0.00 32.61 1.75
270 271 5.634859 GGTTTTTGCGATGAACAATCTGATT 59.365 36.000 0.00 0.00 32.61 2.57
271 272 5.163513 GGTTTTTGCGATGAACAATCTGAT 58.836 37.500 0.00 0.00 32.61 2.90
272 273 4.037327 TGGTTTTTGCGATGAACAATCTGA 59.963 37.500 0.00 0.00 32.61 3.27
273 274 4.297510 TGGTTTTTGCGATGAACAATCTG 58.702 39.130 0.00 0.00 32.61 2.90
274 275 4.582701 TGGTTTTTGCGATGAACAATCT 57.417 36.364 0.00 0.00 32.61 2.40
275 276 5.649602 TTTGGTTTTTGCGATGAACAATC 57.350 34.783 0.00 0.00 0.00 2.67
276 277 6.428385 TTTTTGGTTTTTGCGATGAACAAT 57.572 29.167 0.00 0.00 0.00 2.71
277 278 5.862924 TTTTTGGTTTTTGCGATGAACAA 57.137 30.435 0.00 0.00 0.00 2.83
308 309 9.516314 GCAGTCTACAACAATCTTTTACTTTTT 57.484 29.630 0.00 0.00 0.00 1.94
309 310 8.682710 TGCAGTCTACAACAATCTTTTACTTTT 58.317 29.630 0.00 0.00 0.00 2.27
310 311 8.220755 TGCAGTCTACAACAATCTTTTACTTT 57.779 30.769 0.00 0.00 0.00 2.66
311 312 7.801716 TGCAGTCTACAACAATCTTTTACTT 57.198 32.000 0.00 0.00 0.00 2.24
312 313 7.986085 ATGCAGTCTACAACAATCTTTTACT 57.014 32.000 0.00 0.00 0.00 2.24
313 314 9.922305 GATATGCAGTCTACAACAATCTTTTAC 57.078 33.333 0.00 0.00 0.00 2.01
314 315 9.665719 TGATATGCAGTCTACAACAATCTTTTA 57.334 29.630 0.00 0.00 0.00 1.52
315 316 8.565896 TGATATGCAGTCTACAACAATCTTTT 57.434 30.769 0.00 0.00 0.00 2.27
316 317 8.565896 TTGATATGCAGTCTACAACAATCTTT 57.434 30.769 0.00 0.00 0.00 2.52
317 318 7.826252 ACTTGATATGCAGTCTACAACAATCTT 59.174 33.333 0.00 0.00 0.00 2.40
318 319 7.334090 ACTTGATATGCAGTCTACAACAATCT 58.666 34.615 0.00 0.00 0.00 2.40
319 320 7.545362 ACTTGATATGCAGTCTACAACAATC 57.455 36.000 0.00 0.00 0.00 2.67
320 321 7.627088 GCAACTTGATATGCAGTCTACAACAAT 60.627 37.037 0.00 0.00 42.12 2.71
321 322 6.348458 GCAACTTGATATGCAGTCTACAACAA 60.348 38.462 0.00 0.00 42.12 2.83
322 323 5.122239 GCAACTTGATATGCAGTCTACAACA 59.878 40.000 0.00 0.00 42.12 3.33
323 324 5.447818 GGCAACTTGATATGCAGTCTACAAC 60.448 44.000 0.00 0.00 44.32 3.32
324 325 4.635765 GGCAACTTGATATGCAGTCTACAA 59.364 41.667 0.00 0.00 44.32 2.41
325 326 4.191544 GGCAACTTGATATGCAGTCTACA 58.808 43.478 0.00 0.00 44.32 2.74
326 327 4.191544 TGGCAACTTGATATGCAGTCTAC 58.808 43.478 0.00 0.00 44.32 2.59
327 328 4.486125 TGGCAACTTGATATGCAGTCTA 57.514 40.909 0.00 0.00 44.32 2.59
328 329 3.354948 TGGCAACTTGATATGCAGTCT 57.645 42.857 0.00 0.00 44.32 3.24
329 330 3.428045 GGTTGGCAACTTGATATGCAGTC 60.428 47.826 27.77 4.64 44.32 3.51
330 331 2.493278 GGTTGGCAACTTGATATGCAGT 59.507 45.455 27.77 0.00 44.32 4.40
331 332 2.492881 TGGTTGGCAACTTGATATGCAG 59.507 45.455 27.77 0.00 44.32 4.41
332 333 2.230992 GTGGTTGGCAACTTGATATGCA 59.769 45.455 27.77 13.07 44.32 3.96
333 334 2.493278 AGTGGTTGGCAACTTGATATGC 59.507 45.455 27.77 10.67 41.82 3.14
334 335 4.943705 ACTAGTGGTTGGCAACTTGATATG 59.056 41.667 27.77 14.93 30.15 1.78
335 336 4.943705 CACTAGTGGTTGGCAACTTGATAT 59.056 41.667 27.77 11.96 30.15 1.63
336 337 4.041075 TCACTAGTGGTTGGCAACTTGATA 59.959 41.667 27.77 15.07 30.15 2.15
337 338 3.149196 CACTAGTGGTTGGCAACTTGAT 58.851 45.455 27.77 14.77 30.15 2.57
338 339 2.171659 TCACTAGTGGTTGGCAACTTGA 59.828 45.455 27.77 17.11 30.15 3.02
339 340 2.571212 TCACTAGTGGTTGGCAACTTG 58.429 47.619 27.77 13.10 30.15 3.16
340 341 2.949644 GTTCACTAGTGGTTGGCAACTT 59.050 45.455 27.77 16.63 30.15 2.66
341 342 2.572290 GTTCACTAGTGGTTGGCAACT 58.428 47.619 27.77 12.65 32.67 3.16
342 343 1.607148 GGTTCACTAGTGGTTGGCAAC 59.393 52.381 21.92 21.92 0.00 4.17
343 344 1.477923 GGGTTCACTAGTGGTTGGCAA 60.478 52.381 22.48 5.71 0.00 4.52
344 345 0.109723 GGGTTCACTAGTGGTTGGCA 59.890 55.000 22.48 0.00 0.00 4.92
345 346 0.109723 TGGGTTCACTAGTGGTTGGC 59.890 55.000 22.48 8.41 0.00 4.52
346 347 1.544759 GGTGGGTTCACTAGTGGTTGG 60.545 57.143 22.48 0.00 43.17 3.77
347 348 1.420138 AGGTGGGTTCACTAGTGGTTG 59.580 52.381 22.48 0.00 43.17 3.77
348 349 1.420138 CAGGTGGGTTCACTAGTGGTT 59.580 52.381 22.48 0.00 43.17 3.67
349 350 1.056660 CAGGTGGGTTCACTAGTGGT 58.943 55.000 22.48 0.00 43.17 4.16
350 351 1.056660 ACAGGTGGGTTCACTAGTGG 58.943 55.000 22.48 5.79 43.17 4.00
351 352 2.930826 AACAGGTGGGTTCACTAGTG 57.069 50.000 17.17 17.17 43.17 2.74
352 353 4.595781 TCAATAACAGGTGGGTTCACTAGT 59.404 41.667 0.00 0.00 43.17 2.57
353 354 5.160607 TCAATAACAGGTGGGTTCACTAG 57.839 43.478 0.00 0.00 43.17 2.57
354 355 5.570205 TTCAATAACAGGTGGGTTCACTA 57.430 39.130 0.00 0.00 43.17 2.74
355 356 4.447138 TTCAATAACAGGTGGGTTCACT 57.553 40.909 0.00 0.00 43.17 3.41
356 357 4.764823 TCATTCAATAACAGGTGGGTTCAC 59.235 41.667 0.00 0.00 42.91 3.18
357 358 4.991776 TCATTCAATAACAGGTGGGTTCA 58.008 39.130 0.00 0.00 32.29 3.18
358 359 6.530019 AATCATTCAATAACAGGTGGGTTC 57.470 37.500 0.00 0.00 32.29 3.62
359 360 7.410174 TCTAATCATTCAATAACAGGTGGGTT 58.590 34.615 0.00 0.00 34.81 4.11
360 361 6.969043 TCTAATCATTCAATAACAGGTGGGT 58.031 36.000 0.00 0.00 0.00 4.51
361 362 7.775093 TCTTCTAATCATTCAATAACAGGTGGG 59.225 37.037 0.00 0.00 0.00 4.61
362 363 8.737168 TCTTCTAATCATTCAATAACAGGTGG 57.263 34.615 0.00 0.00 0.00 4.61
363 364 9.994432 GTTCTTCTAATCATTCAATAACAGGTG 57.006 33.333 0.00 0.00 0.00 4.00
364 365 9.739276 TGTTCTTCTAATCATTCAATAACAGGT 57.261 29.630 0.00 0.00 0.00 4.00
368 369 9.994432 CCACTGTTCTTCTAATCATTCAATAAC 57.006 33.333 0.00 0.00 0.00 1.89
369 370 9.739276 ACCACTGTTCTTCTAATCATTCAATAA 57.261 29.630 0.00 0.00 0.00 1.40
371 372 9.911788 ATACCACTGTTCTTCTAATCATTCAAT 57.088 29.630 0.00 0.00 0.00 2.57
372 373 9.383519 GATACCACTGTTCTTCTAATCATTCAA 57.616 33.333 0.00 0.00 0.00 2.69
373 374 7.987458 GGATACCACTGTTCTTCTAATCATTCA 59.013 37.037 0.00 0.00 0.00 2.57
374 375 8.371770 GGATACCACTGTTCTTCTAATCATTC 57.628 38.462 0.00 0.00 0.00 2.67
398 399 4.410400 GAACCCCGACAGGCTGGG 62.410 72.222 20.34 12.90 45.94 4.45
399 400 3.190738 TTGAACCCCGACAGGCTGG 62.191 63.158 20.34 2.42 35.76 4.85
400 401 1.672356 CTTGAACCCCGACAGGCTG 60.672 63.158 14.16 14.16 35.76 4.85
401 402 2.113243 GACTTGAACCCCGACAGGCT 62.113 60.000 0.00 0.00 35.76 4.58
402 403 1.671379 GACTTGAACCCCGACAGGC 60.671 63.158 0.00 0.00 35.76 4.85
403 404 1.003718 GGACTTGAACCCCGACAGG 60.004 63.158 0.00 0.00 37.24 4.00
404 405 1.204941 CTAGGACTTGAACCCCGACAG 59.795 57.143 0.00 0.00 0.00 3.51
405 406 1.203087 TCTAGGACTTGAACCCCGACA 60.203 52.381 0.00 0.00 0.00 4.35
406 407 1.477295 CTCTAGGACTTGAACCCCGAC 59.523 57.143 0.00 0.00 0.00 4.79
407 408 1.076677 ACTCTAGGACTTGAACCCCGA 59.923 52.381 0.00 0.00 0.00 5.14
408 409 1.558233 ACTCTAGGACTTGAACCCCG 58.442 55.000 0.00 0.00 0.00 5.73
409 410 2.615747 GCAACTCTAGGACTTGAACCCC 60.616 54.545 0.00 0.00 0.00 4.95
410 411 2.615747 GGCAACTCTAGGACTTGAACCC 60.616 54.545 0.00 0.00 0.00 4.11
411 412 2.038557 TGGCAACTCTAGGACTTGAACC 59.961 50.000 0.00 0.00 37.61 3.62
412 413 3.402628 TGGCAACTCTAGGACTTGAAC 57.597 47.619 0.00 0.00 37.61 3.18
413 414 4.326826 CATTGGCAACTCTAGGACTTGAA 58.673 43.478 0.00 0.00 37.61 2.69
414 415 3.307691 CCATTGGCAACTCTAGGACTTGA 60.308 47.826 0.00 0.00 37.61 3.02
415 416 3.012518 CCATTGGCAACTCTAGGACTTG 58.987 50.000 0.00 0.00 37.61 3.16
416 417 3.356529 CCATTGGCAACTCTAGGACTT 57.643 47.619 0.00 0.00 37.61 3.01
429 430 0.390209 AAAATGTGAGCGCCATTGGC 60.390 50.000 18.10 18.10 46.75 4.52
430 431 2.083167 AAAAATGTGAGCGCCATTGG 57.917 45.000 2.29 0.00 33.01 3.16
431 432 5.820131 TCTATAAAAATGTGAGCGCCATTG 58.180 37.500 2.29 0.00 33.01 2.82
432 433 6.639632 ATCTATAAAAATGTGAGCGCCATT 57.360 33.333 2.29 3.84 34.07 3.16
433 434 6.639632 AATCTATAAAAATGTGAGCGCCAT 57.360 33.333 2.29 0.00 0.00 4.40
434 435 6.449635 AAATCTATAAAAATGTGAGCGCCA 57.550 33.333 2.29 0.00 0.00 5.69
435 436 9.463443 AAATAAATCTATAAAAATGTGAGCGCC 57.537 29.630 2.29 0.00 0.00 6.53
445 446 9.143155 GGGAGGCCTGAAATAAATCTATAAAAA 57.857 33.333 12.00 0.00 0.00 1.94
446 447 7.447238 CGGGAGGCCTGAAATAAATCTATAAAA 59.553 37.037 12.00 0.00 29.82 1.52
447 448 6.940298 CGGGAGGCCTGAAATAAATCTATAAA 59.060 38.462 12.00 0.00 29.82 1.40
448 449 6.271391 TCGGGAGGCCTGAAATAAATCTATAA 59.729 38.462 12.00 0.00 35.75 0.98
449 450 5.783360 TCGGGAGGCCTGAAATAAATCTATA 59.217 40.000 12.00 0.00 35.75 1.31
450 451 4.597507 TCGGGAGGCCTGAAATAAATCTAT 59.402 41.667 12.00 0.00 35.75 1.98
451 452 3.971305 TCGGGAGGCCTGAAATAAATCTA 59.029 43.478 12.00 0.00 35.75 1.98
452 453 2.777692 TCGGGAGGCCTGAAATAAATCT 59.222 45.455 12.00 0.00 35.75 2.40
453 454 3.208747 TCGGGAGGCCTGAAATAAATC 57.791 47.619 12.00 0.00 35.75 2.17
454 455 3.138283 TCATCGGGAGGCCTGAAATAAAT 59.862 43.478 12.00 0.00 42.74 1.40
455 456 2.507886 TCATCGGGAGGCCTGAAATAAA 59.492 45.455 12.00 0.00 42.74 1.40
456 457 2.123589 TCATCGGGAGGCCTGAAATAA 58.876 47.619 12.00 0.00 42.74 1.40
457 458 1.801242 TCATCGGGAGGCCTGAAATA 58.199 50.000 12.00 0.00 42.74 1.40
458 459 1.143813 ATCATCGGGAGGCCTGAAAT 58.856 50.000 12.00 0.00 42.74 2.17
459 460 0.181114 CATCATCGGGAGGCCTGAAA 59.819 55.000 12.00 0.00 42.74 2.69
460 461 0.690744 TCATCATCGGGAGGCCTGAA 60.691 55.000 12.00 0.00 42.74 3.02
461 462 1.075301 TCATCATCGGGAGGCCTGA 60.075 57.895 12.00 0.28 43.71 3.86
462 463 1.370437 CTCATCATCGGGAGGCCTG 59.630 63.158 12.00 0.00 0.00 4.85
463 464 2.515071 GCTCATCATCGGGAGGCCT 61.515 63.158 3.86 3.86 0.00 5.19
464 465 2.031768 GCTCATCATCGGGAGGCC 59.968 66.667 0.00 0.00 0.00 5.19
465 466 0.179034 AAAGCTCATCATCGGGAGGC 60.179 55.000 0.00 0.00 0.00 4.70
466 467 1.139654 TGAAAGCTCATCATCGGGAGG 59.860 52.381 0.00 0.00 0.00 4.30
467 468 2.158986 ACTGAAAGCTCATCATCGGGAG 60.159 50.000 2.92 0.00 37.60 4.30
468 469 1.833630 ACTGAAAGCTCATCATCGGGA 59.166 47.619 2.92 0.00 37.60 5.14
469 470 1.938577 CACTGAAAGCTCATCATCGGG 59.061 52.381 2.92 0.00 37.60 5.14
470 471 1.938577 CCACTGAAAGCTCATCATCGG 59.061 52.381 2.92 3.59 37.60 4.18
471 472 1.938577 CCCACTGAAAGCTCATCATCG 59.061 52.381 2.92 0.00 37.60 3.84
472 473 2.996631 ACCCACTGAAAGCTCATCATC 58.003 47.619 2.92 0.00 37.60 2.92
473 474 3.118112 CCTACCCACTGAAAGCTCATCAT 60.118 47.826 2.92 0.00 37.60 2.45
474 475 2.237143 CCTACCCACTGAAAGCTCATCA 59.763 50.000 2.55 2.55 37.60 3.07
475 476 2.420687 CCCTACCCACTGAAAGCTCATC 60.421 54.545 0.00 0.00 37.60 2.92
476 477 1.561542 CCCTACCCACTGAAAGCTCAT 59.438 52.381 0.00 0.00 37.60 2.90
477 478 0.984230 CCCTACCCACTGAAAGCTCA 59.016 55.000 0.00 0.00 37.60 4.26
478 479 0.984995 ACCCTACCCACTGAAAGCTC 59.015 55.000 0.00 0.00 37.60 4.09
479 480 0.693049 CACCCTACCCACTGAAAGCT 59.307 55.000 0.00 0.00 37.60 3.74
480 481 0.400594 ACACCCTACCCACTGAAAGC 59.599 55.000 0.00 0.00 37.60 3.51
481 482 1.882352 GCACACCCTACCCACTGAAAG 60.882 57.143 0.00 0.00 42.29 2.62
482 483 0.109723 GCACACCCTACCCACTGAAA 59.890 55.000 0.00 0.00 0.00 2.69
483 484 1.758592 GCACACCCTACCCACTGAA 59.241 57.895 0.00 0.00 0.00 3.02
484 485 2.579657 CGCACACCCTACCCACTGA 61.580 63.158 0.00 0.00 0.00 3.41
485 486 2.047274 CGCACACCCTACCCACTG 60.047 66.667 0.00 0.00 0.00 3.66
486 487 2.525877 ACGCACACCCTACCCACT 60.526 61.111 0.00 0.00 0.00 4.00
487 488 1.818959 TACACGCACACCCTACCCAC 61.819 60.000 0.00 0.00 0.00 4.61
488 489 0.905809 ATACACGCACACCCTACCCA 60.906 55.000 0.00 0.00 0.00 4.51
489 490 0.461339 CATACACGCACACCCTACCC 60.461 60.000 0.00 0.00 0.00 3.69
490 491 0.248289 ACATACACGCACACCCTACC 59.752 55.000 0.00 0.00 0.00 3.18
491 492 2.945447 TACATACACGCACACCCTAC 57.055 50.000 0.00 0.00 0.00 3.18
492 493 3.447944 TGAATACATACACGCACACCCTA 59.552 43.478 0.00 0.00 0.00 3.53
493 494 2.235155 TGAATACATACACGCACACCCT 59.765 45.455 0.00 0.00 0.00 4.34
494 495 2.623535 TGAATACATACACGCACACCC 58.376 47.619 0.00 0.00 0.00 4.61
495 496 5.050363 CCTTATGAATACATACACGCACACC 60.050 44.000 0.00 0.00 38.50 4.16
496 497 5.050363 CCCTTATGAATACATACACGCACAC 60.050 44.000 0.00 0.00 38.50 3.82
497 498 5.053811 CCCTTATGAATACATACACGCACA 58.946 41.667 0.00 0.00 38.50 4.57
498 499 5.050363 CACCCTTATGAATACATACACGCAC 60.050 44.000 0.00 0.00 38.50 5.34
499 500 5.053811 CACCCTTATGAATACATACACGCA 58.946 41.667 0.00 0.00 38.50 5.24
500 501 5.294356 TCACCCTTATGAATACATACACGC 58.706 41.667 0.00 0.00 38.50 5.34
501 502 6.420903 CACTCACCCTTATGAATACATACACG 59.579 42.308 0.00 0.00 38.50 4.49
502 503 7.272978 ACACTCACCCTTATGAATACATACAC 58.727 38.462 0.00 0.00 38.50 2.90
503 504 7.432148 ACACTCACCCTTATGAATACATACA 57.568 36.000 0.00 0.00 38.50 2.29
507 508 9.154632 ACATATACACTCACCCTTATGAATACA 57.845 33.333 0.00 0.00 0.00 2.29
529 530 9.978044 AGACGTAGACGCTCATATATATACATA 57.022 33.333 1.14 0.00 44.43 2.29
530 531 8.766151 CAGACGTAGACGCTCATATATATACAT 58.234 37.037 1.14 0.00 44.43 2.29
531 532 7.763071 ACAGACGTAGACGCTCATATATATACA 59.237 37.037 1.14 0.00 44.43 2.29
532 533 8.129161 ACAGACGTAGACGCTCATATATATAC 57.871 38.462 1.14 0.00 44.43 1.47
533 534 9.242477 GTACAGACGTAGACGCTCATATATATA 57.758 37.037 1.14 0.00 44.43 0.86
534 535 7.980662 AGTACAGACGTAGACGCTCATATATAT 59.019 37.037 1.14 0.00 44.43 0.86
535 536 7.275123 CAGTACAGACGTAGACGCTCATATATA 59.725 40.741 1.14 0.00 44.43 0.86
536 537 6.091034 CAGTACAGACGTAGACGCTCATATAT 59.909 42.308 1.14 0.00 44.43 0.86
537 538 5.404667 CAGTACAGACGTAGACGCTCATATA 59.595 44.000 1.14 0.00 44.43 0.86
538 539 4.211584 CAGTACAGACGTAGACGCTCATAT 59.788 45.833 1.14 0.00 44.43 1.78
539 540 3.554731 CAGTACAGACGTAGACGCTCATA 59.445 47.826 1.14 0.00 44.43 2.15
540 541 2.352034 CAGTACAGACGTAGACGCTCAT 59.648 50.000 1.14 0.00 44.43 2.90
541 542 1.730612 CAGTACAGACGTAGACGCTCA 59.269 52.381 1.14 0.00 44.43 4.26
542 543 1.731160 ACAGTACAGACGTAGACGCTC 59.269 52.381 1.14 0.00 44.43 5.03
543 544 1.463831 CACAGTACAGACGTAGACGCT 59.536 52.381 1.14 0.00 44.43 5.07
544 545 1.196354 ACACAGTACAGACGTAGACGC 59.804 52.381 1.14 0.00 44.43 5.19
545 546 3.532892 AACACAGTACAGACGTAGACG 57.467 47.619 0.00 0.00 46.33 4.18
546 547 7.684062 TTTTTAACACAGTACAGACGTAGAC 57.316 36.000 0.00 0.00 0.00 2.59
650 652 4.065281 GGTGCGCACGGACTAGGT 62.065 66.667 32.35 0.00 36.67 3.08
1363 1365 3.452474 CTTCGCCATCGATCTCTTCTTT 58.548 45.455 0.00 0.00 45.04 2.52
2183 2201 1.251527 AAACACCACAAACCCACGCA 61.252 50.000 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.